Query 001176
Match_columns 1132
No_of_seqs 847 out of 4907
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 17:54:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 1.8E-68 3.8E-73 532.4 35.7 490 5-660 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 2.5E-62 5.4E-67 472.4 33.8 489 4-657 6-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 4.6E-57 9.9E-62 484.3 49.5 579 349-1101 25-622 (775)
4 KOG0319 WD40-repeat-containing 100.0 4.7E-53 1E-57 453.5 46.8 573 315-999 25-618 (775)
5 KOG0318 WD40 repeat stress pro 100.0 2.1E-50 4.6E-55 416.1 61.9 571 348-1098 23-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 4.7E-50 1E-54 430.1 63.1 576 314-1099 19-710 (893)
7 KOG0318 WD40 repeat stress pro 100.0 1.6E-49 3.5E-54 409.6 58.5 556 319-1000 36-602 (603)
8 KOG0291 WD40-repeat-containing 100.0 7.8E-49 1.7E-53 420.8 58.9 591 311-1053 57-718 (893)
9 KOG0306 WD40-repeat-containing 100.0 5.2E-48 1.1E-52 414.2 52.4 572 353-1099 32-665 (888)
10 KOG0306 WD40-repeat-containing 100.0 3.3E-48 7.2E-53 415.7 49.5 505 341-1001 63-665 (888)
11 KOG0271 Notchless-like WD40 re 100.0 3E-50 6.5E-55 398.4 29.6 367 401-949 111-479 (480)
12 KOG0271 Notchless-like WD40 re 100.0 1.5E-49 3.2E-54 393.4 29.7 330 336-797 107-479 (480)
13 KOG1408 WD40 repeat protein [F 100.0 1.3E-43 2.8E-48 376.8 44.5 622 348-1099 42-714 (1080)
14 KOG0263 Transcription initiati 100.0 3.4E-43 7.4E-48 383.1 38.0 551 4-617 20-651 (707)
15 KOG0273 Beta-transducin family 100.0 6.9E-41 1.5E-45 341.6 36.4 312 332-668 167-490 (524)
16 KOG1539 WD repeat protein [Gen 100.0 1.2E-37 2.7E-42 339.1 55.5 585 349-1099 39-649 (910)
17 KOG1408 WD40 repeat protein [F 100.0 1E-38 2.3E-43 339.5 43.0 599 314-1047 50-716 (1080)
18 KOG0272 U4/U6 small nuclear ri 100.0 3.1E-41 6.8E-46 339.8 22.3 282 342-657 174-458 (459)
19 KOG1063 RNA polymerase II elon 100.0 2.8E-37 6.1E-42 329.7 49.5 637 324-1098 34-763 (764)
20 KOG0272 U4/U6 small nuclear ri 100.0 2E-40 4.4E-45 333.9 23.7 285 403-797 173-458 (459)
21 KOG0276 Vesicle coat complex C 100.0 1.9E-37 4.2E-42 326.1 44.0 589 342-1119 12-613 (794)
22 KOG0286 G-protein beta subunit 100.0 3.7E-38 8E-43 302.5 33.6 291 337-657 48-343 (343)
23 KOG0279 G protein beta subunit 100.0 4.8E-38 1E-42 300.1 32.4 297 336-659 7-313 (315)
24 KOG1539 WD repeat protein [Gen 100.0 9.9E-36 2.1E-40 324.4 53.0 553 342-1045 75-649 (910)
25 KOG0286 G-protein beta subunit 100.0 1.6E-36 3.4E-41 291.4 32.9 248 401-661 51-305 (343)
26 KOG1063 RNA polymerase II elon 100.0 2.2E-35 4.8E-40 315.2 43.7 585 349-1101 20-702 (764)
27 KOG2106 Uncharacterized conser 100.0 4.4E-34 9.6E-39 293.7 49.0 540 347-1097 69-625 (626)
28 KOG0292 Vesicle coat complex C 100.0 4.2E-34 9E-39 312.2 50.3 556 342-1047 8-597 (1202)
29 KOG0315 G-protein beta subunit 100.0 8.2E-36 1.8E-40 279.5 29.6 285 355-673 9-301 (311)
30 KOG0276 Vesicle coat complex C 100.0 5.3E-34 1.2E-38 300.3 44.9 464 401-1043 9-489 (794)
31 KOG0279 G protein beta subunit 100.0 4.5E-35 9.7E-40 279.9 32.1 296 766-1099 12-314 (315)
32 KOG0292 Vesicle coat complex C 100.0 1.6E-33 3.4E-38 307.7 47.3 474 401-1044 5-518 (1202)
33 KOG0296 Angio-associated migra 100.0 1.5E-34 3.3E-39 286.4 35.4 339 445-951 59-398 (399)
34 KOG0315 G-protein beta subunit 100.0 9.4E-35 2E-39 272.5 31.5 295 509-930 11-309 (311)
35 KOG0295 WD40 repeat-containing 100.0 1.4E-35 3E-40 293.4 26.3 309 317-658 82-405 (406)
36 KOG0273 Beta-transducin family 100.0 1.1E-34 2.4E-39 296.4 31.9 281 342-659 234-523 (524)
37 KOG0284 Polyadenylation factor 100.0 9E-36 1.9E-40 298.8 21.3 343 282-658 24-379 (464)
38 KOG0285 Pleiotropic regulator 100.0 5.7E-35 1.2E-39 287.6 26.0 295 332-660 139-440 (460)
39 KOG0645 WD40 repeat protein [G 100.0 1.5E-33 3.2E-38 268.2 33.0 292 336-659 6-311 (312)
40 KOG0296 Angio-associated migra 100.0 3.4E-33 7.4E-38 276.9 34.5 329 401-909 60-398 (399)
41 KOG2106 Uncharacterized conser 100.0 7.4E-32 1.6E-36 277.4 44.5 495 292-950 87-625 (626)
42 KOG0265 U5 snRNP-specific prot 100.0 8.3E-34 1.8E-38 274.0 27.3 285 341-657 45-336 (338)
43 KOG2048 WD40 repeat protein [G 100.0 5.3E-30 1.1E-34 274.3 57.1 550 404-1098 24-601 (691)
44 KOG0285 Pleiotropic regulator 100.0 3.1E-33 6.7E-38 275.4 25.4 246 400-661 146-391 (460)
45 KOG0265 U5 snRNP-specific prot 100.0 1.8E-32 3.9E-37 264.8 29.1 251 400-661 42-298 (338)
46 KOG0295 WD40 repeat-containing 100.0 6.8E-33 1.5E-37 274.5 25.3 255 401-670 104-374 (406)
47 KOG0266 WD40 repeat-containing 100.0 2.7E-32 5.9E-37 311.8 33.6 291 337-659 151-454 (456)
48 KOG0316 Conserved WD40 repeat- 100.0 2.7E-32 5.9E-37 253.7 25.5 288 333-657 6-297 (307)
49 KOG0282 mRNA splicing factor [ 100.0 2.2E-33 4.7E-38 288.5 17.6 294 332-657 202-503 (503)
50 KOG0293 WD40 repeat-containing 100.0 2.2E-32 4.7E-37 274.4 24.2 294 400-910 219-514 (519)
51 KOG0263 Transcription initiati 100.0 9.7E-33 2.1E-37 301.7 23.5 247 404-661 377-651 (707)
52 KOG0281 Beta-TrCP (transducin 100.0 3.2E-33 7E-38 273.8 15.9 272 342-661 196-479 (499)
53 KOG2048 WD40 repeat protein [G 100.0 2.3E-28 5.1E-33 261.8 53.2 500 450-1099 25-549 (691)
54 KOG0284 Polyadenylation factor 100.0 3.8E-32 8.2E-37 272.9 21.6 283 769-1101 96-383 (464)
55 KOG1445 Tumor-specific antigen 100.0 4.5E-30 9.7E-35 270.3 37.9 611 400-1106 74-852 (1012)
56 KOG0266 WD40 repeat-containing 100.0 6.3E-31 1.4E-35 300.7 33.5 290 768-1098 158-454 (456)
57 KOG0645 WD40 repeat protein [G 100.0 2E-30 4.3E-35 247.0 30.9 292 767-1098 12-311 (312)
58 cd00200 WD40 WD40 domain, foun 100.0 2.5E-30 5.5E-35 283.9 36.6 285 339-657 4-289 (289)
59 KOG0282 mRNA splicing factor [ 100.0 1.4E-31 3.1E-36 275.1 18.5 297 484-907 204-503 (503)
60 KOG0275 Conserved WD40 repeat- 100.0 4.4E-31 9.6E-36 256.2 16.9 292 768-1096 212-507 (508)
61 PLN00181 protein SPA1-RELATED; 100.0 8.6E-29 1.9E-33 306.3 40.6 291 342-658 482-792 (793)
62 KOG0281 Beta-TrCP (transducin 100.0 4.5E-31 9.7E-36 258.8 15.5 232 404-661 196-430 (499)
63 KOG0278 Serine/threonine kinas 100.0 1.6E-30 3.4E-35 244.0 17.2 282 342-661 13-299 (334)
64 cd00200 WD40 WD40 domain, foun 100.0 2E-28 4.2E-33 268.9 37.0 247 401-661 5-251 (289)
65 KOG0316 Conserved WD40 repeat- 100.0 2.3E-29 5.1E-34 234.2 24.4 247 399-661 11-259 (307)
66 KOG0313 Microtubule binding pr 100.0 3.3E-29 7.2E-34 249.7 25.8 294 328-658 90-417 (423)
67 KOG0288 WD40 repeat protein Ti 100.0 4.2E-30 9.2E-35 258.8 18.0 295 329-656 160-458 (459)
68 PLN00181 protein SPA1-RELATED; 100.0 6.9E-28 1.5E-32 298.2 41.3 271 365-661 457-740 (793)
69 KOG0973 Histone transcription 100.0 7.3E-29 1.6E-33 281.2 28.6 306 342-661 12-357 (942)
70 KOG0278 Serine/threonine kinas 100.0 7.6E-30 1.7E-34 239.4 17.0 298 766-1115 11-316 (334)
71 KOG0310 Conserved WD40 repeat- 100.0 2.4E-28 5.1E-33 252.2 27.7 283 342-658 25-308 (487)
72 KOG0641 WD40 repeat protein [G 100.0 4.7E-27 1E-31 217.0 31.7 312 333-659 22-349 (350)
73 KOG0643 Translation initiation 100.0 4.1E-28 8.8E-33 230.5 22.9 284 341-660 8-318 (327)
74 PTZ00421 coronin; Provisional 100.0 8.3E-27 1.8E-31 264.3 36.1 306 342-660 19-332 (493)
75 KOG0277 Peroxisomal targeting 100.0 7.9E-28 1.7E-32 226.9 22.3 286 345-658 10-308 (311)
76 KOG0643 Translation initiation 100.0 1.2E-26 2.7E-31 220.5 29.5 235 400-650 5-252 (327)
77 KOG0647 mRNA export protein (c 100.0 4.6E-27 1E-31 227.6 26.6 274 342-648 26-312 (347)
78 KOG0283 WD40 repeat-containing 100.0 9.3E-28 2E-32 265.5 24.6 300 342-661 266-578 (712)
79 KOG1407 WD40 repeat protein [F 100.0 1.7E-26 3.6E-31 219.0 29.1 274 342-650 19-293 (313)
80 KOG0640 mRNA cleavage stimulat 100.0 1.6E-27 3.5E-32 230.6 22.4 308 337-657 105-424 (430)
81 KOG1446 Histone H3 (Lys4) meth 100.0 7.9E-26 1.7E-30 222.0 33.4 282 342-659 13-303 (311)
82 KOG0274 Cdc4 and related F-box 100.0 6.6E-27 1.4E-31 264.7 29.3 283 342-668 207-490 (537)
83 KOG0305 Anaphase promoting com 100.0 5.7E-27 1.2E-31 253.5 27.2 278 347-661 181-463 (484)
84 KOG1407 WD40 repeat protein [F 100.0 2.2E-26 4.8E-31 218.2 26.9 276 445-900 15-293 (313)
85 KOG0772 Uncharacterized conser 100.0 8E-27 1.7E-31 241.2 24.9 297 768-1101 166-491 (641)
86 KOG1446 Histone H3 (Lys4) meth 100.0 1.3E-25 2.7E-30 220.5 31.4 253 837-1109 14-273 (311)
87 KOG0640 mRNA cleavage stimulat 100.0 7.6E-27 1.6E-31 226.0 22.1 254 400-661 107-385 (430)
88 KOG0313 Microtubule binding pr 100.0 2.3E-26 5E-31 229.6 26.0 282 448-908 103-417 (423)
89 KOG0310 Conserved WD40 repeat- 100.0 1.9E-26 4.2E-31 238.2 25.4 285 768-1101 25-312 (487)
90 KOG0277 Peroxisomal targeting 100.0 8.2E-27 1.8E-31 220.1 20.2 270 317-614 34-308 (311)
91 KOG0973 Histone transcription 99.9 1.9E-26 4.1E-31 261.7 26.5 303 768-1101 12-358 (942)
92 KOG0294 WD40 repeat-containing 99.9 9.9E-26 2.2E-30 219.7 27.1 240 833-1101 40-284 (362)
93 KOG0305 Anaphase promoting com 99.9 4.5E-26 9.7E-31 246.6 26.8 261 326-617 199-463 (484)
94 KOG0772 Uncharacterized conser 99.9 3.7E-26 8E-31 236.3 24.4 302 332-657 155-485 (641)
95 KOG0308 Conserved WD40 repeat- 99.9 1.9E-26 4E-31 245.5 22.8 293 342-659 20-327 (735)
96 KOG0288 WD40 repeat protein Ti 99.9 5.8E-27 1.3E-31 236.3 17.5 253 401-668 171-425 (459)
97 KOG0299 U3 snoRNP-associated p 99.9 8.9E-26 1.9E-30 231.3 26.2 297 338-656 136-453 (479)
98 PTZ00420 coronin; Provisional 99.9 8.7E-25 1.9E-29 248.1 36.6 237 401-642 70-319 (568)
99 KOG1445 Tumor-specific antigen 99.9 1.8E-24 3.8E-29 228.5 36.1 609 336-999 71-843 (1012)
100 KOG0300 WD40 repeat-containing 99.9 4.9E-26 1.1E-30 220.8 21.7 298 333-661 137-478 (481)
101 KOG0289 mRNA splicing factor [ 99.9 3.9E-25 8.5E-30 224.3 28.5 284 344-658 220-505 (506)
102 KOG0301 Phospholipase A2-activ 99.9 1.6E-25 3.6E-30 240.3 27.3 284 334-661 4-290 (745)
103 PTZ00421 coronin; Provisional 99.9 5.7E-25 1.2E-29 249.4 33.5 250 404-661 19-292 (493)
104 KOG0268 Sof1-like rRNA process 99.9 1E-26 2.2E-31 230.4 15.5 287 337-661 59-347 (433)
105 KOG1036 Mitotic spindle checkp 99.9 7.4E-25 1.6E-29 213.7 28.0 269 342-649 12-294 (323)
106 KOG0274 Cdc4 and related F-box 99.9 4.2E-25 9.2E-30 250.0 30.3 242 404-668 207-449 (537)
107 KOG0308 Conserved WD40 repeat- 99.9 5.1E-26 1.1E-30 242.1 20.9 242 410-661 29-287 (735)
108 KOG0299 U3 snoRNP-associated p 99.9 3E-25 6.5E-30 227.5 25.7 251 401-662 138-413 (479)
109 KOG0641 WD40 repeat protein [G 99.9 5.2E-24 1.1E-28 196.9 30.7 302 768-1098 31-349 (350)
110 KOG0283 WD40 repeat-containing 99.9 2.7E-25 5.8E-30 246.1 26.5 274 767-1047 265-579 (712)
111 KOG0647 mRNA export protein (c 99.9 1.2E-24 2.6E-29 211.0 26.1 249 402-661 24-283 (347)
112 KOG0294 WD40 repeat-containing 99.9 3.1E-24 6.8E-29 209.3 27.3 243 401-661 39-283 (362)
113 KOG0268 Sof1-like rRNA process 99.9 7.6E-26 1.7E-30 224.2 16.1 287 445-870 61-349 (433)
114 KOG0300 WD40 repeat-containing 99.9 8.1E-25 1.8E-29 212.4 22.2 331 575-1046 139-478 (481)
115 KOG2096 WD40 repeat protein [G 99.9 6.5E-24 1.4E-28 206.8 26.6 254 771-1043 134-401 (420)
116 KOG1332 Vesicle coat complex C 99.9 6.4E-25 1.4E-29 206.2 18.3 251 401-659 7-286 (299)
117 PTZ00420 coronin; Provisional 99.9 2.2E-23 4.8E-28 236.7 33.9 228 423-661 50-295 (568)
118 KOG1274 WD40 repeat protein [G 99.9 8.9E-21 1.9E-25 210.9 53.3 277 341-655 11-296 (933)
119 KOG0289 mRNA splicing factor [ 99.9 8.2E-24 1.8E-28 214.8 26.8 240 406-658 220-461 (506)
120 KOG1963 WD40 repeat protein [G 99.9 1.7E-22 3.6E-27 224.6 39.0 505 411-1106 22-591 (792)
121 KOG0301 Phospholipase A2-activ 99.9 3.6E-24 7.8E-29 230.1 23.7 275 766-1098 11-288 (745)
122 KOG2096 WD40 repeat protein [G 99.9 2.4E-23 5.2E-28 202.8 26.7 291 766-1096 83-400 (420)
123 KOG0264 Nucleosome remodeling 99.9 6E-24 1.3E-28 218.6 22.8 265 336-616 117-405 (422)
124 KOG0639 Transducin-like enhanc 99.9 3.1E-24 6.7E-29 221.0 20.7 293 335-658 411-703 (705)
125 KOG0639 Transducin-like enhanc 99.9 1.1E-23 2.4E-28 216.9 21.3 283 768-1098 418-704 (705)
126 KOG4283 Transcription-coupled 99.9 1.5E-22 3.3E-27 195.1 26.1 300 342-658 42-364 (397)
127 KOG1332 Vesicle coat complex C 99.9 1.8E-23 4E-28 196.5 18.3 251 342-615 10-286 (299)
128 KOG0646 WD40 repeat protein [G 99.9 6.3E-23 1.4E-27 211.1 23.5 225 404-640 80-330 (476)
129 KOG0264 Nucleosome remodeling 99.9 7.7E-23 1.7E-27 210.5 22.1 252 402-660 121-405 (422)
130 KOG0646 WD40 repeat protein [G 99.9 2E-22 4.3E-27 207.5 24.2 305 468-933 11-331 (476)
131 KOG2055 WD40 repeat protein [G 99.9 2.5E-22 5.3E-27 206.0 24.6 289 494-909 213-512 (514)
132 KOG1273 WD40 repeat protein [G 99.9 5.8E-22 1.2E-26 193.1 25.9 297 332-661 13-324 (405)
133 KOG2055 WD40 repeat protein [G 99.9 2.9E-22 6.2E-27 205.5 24.9 288 343-659 213-512 (514)
134 KOG1274 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 216.9 29.8 281 767-1092 11-294 (933)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.8E-20 6E-25 205.7 39.6 292 466-931 3-300 (300)
136 KOG4328 WD40 protein [Function 99.9 1E-21 2.2E-26 201.4 24.8 300 336-659 178-495 (498)
137 KOG1963 WD40 repeat protein [G 99.9 1.4E-19 2.9E-24 201.7 42.5 472 454-1099 20-539 (792)
138 KOG1036 Mitotic spindle checkp 99.9 3.4E-21 7.5E-26 188.3 26.3 270 768-1088 12-294 (323)
139 KOG0267 Microtubule severing p 99.9 1.6E-23 3.4E-28 225.9 10.8 235 402-650 25-259 (825)
140 KOG0321 WD40 repeat-containing 99.9 9.7E-22 2.1E-26 209.4 24.2 290 781-1101 64-394 (720)
141 KOG1273 WD40 repeat protein [G 99.9 1.4E-21 3.1E-26 190.4 23.1 253 408-672 26-292 (405)
142 KOG1538 Uncharacterized conser 99.9 8.5E-21 1.8E-25 202.0 30.0 273 345-660 14-294 (1081)
143 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.1E-20 6.8E-25 205.3 36.2 276 358-669 3-288 (300)
144 KOG0650 WD40 repeat nucleolar 99.9 4E-21 8.7E-26 202.9 25.4 317 444-948 394-732 (733)
145 KOG4283 Transcription-coupled 99.9 7.1E-21 1.5E-25 183.7 24.6 302 767-1097 41-364 (397)
146 KOG2445 Nuclear pore complex c 99.9 1.8E-20 4E-25 182.5 27.0 259 835-1101 12-321 (361)
147 KOG0321 WD40 repeat-containing 99.9 7.3E-21 1.6E-25 202.8 23.2 291 347-661 53-393 (720)
148 KOG0269 WD40 repeat-containing 99.9 2.9E-21 6.3E-26 210.5 20.5 297 343-661 39-342 (839)
149 KOG0270 WD40 repeat-containing 99.9 8.1E-21 1.8E-25 194.4 19.6 241 417-663 192-453 (463)
150 KOG2445 Nuclear pore complex c 99.9 1.4E-19 3.1E-24 176.4 26.4 253 401-659 9-318 (361)
151 KOG1009 Chromatin assembly com 99.9 9.7E-20 2.1E-24 184.4 25.8 304 342-661 12-374 (434)
152 KOG0650 WD40 repeat nucleolar 99.9 6.2E-20 1.3E-24 194.0 25.4 329 576-1041 392-732 (733)
153 KOG0269 WD40 repeat-containing 99.9 3.2E-21 6.8E-26 210.2 15.8 245 345-617 89-342 (839)
154 KOG1034 Transcriptional repres 99.9 1.1E-19 2.3E-24 178.8 22.7 296 335-658 28-382 (385)
155 KOG0307 Vesicle coat complex C 99.9 4.5E-21 9.8E-26 219.1 15.2 251 405-661 64-329 (1049)
156 KOG1538 Uncharacterized conser 99.8 5.4E-19 1.2E-23 188.4 28.9 415 540-1109 14-497 (1081)
157 KOG0267 Microtubule severing p 99.8 2.5E-21 5.3E-26 209.2 10.4 233 342-606 27-259 (825)
158 KOG1034 Transcriptional repres 99.8 2.7E-19 5.9E-24 176.0 22.4 300 768-1098 37-383 (385)
159 KOG4378 Nuclear protein COP1 [ 99.8 1.6E-19 3.4E-24 186.4 21.0 293 735-1077 5-303 (673)
160 COG2319 FOG: WD40 repeat [Gene 99.8 9.4E-17 2E-21 188.3 47.9 371 401-952 61-443 (466)
161 KOG2919 Guanine nucleotide-bin 99.8 5.5E-19 1.2E-23 173.2 22.6 289 345-650 51-361 (406)
162 COG2319 FOG: WD40 repeat [Gene 99.8 3.2E-16 6.9E-21 183.8 50.2 287 341-661 63-361 (466)
163 KOG0302 Ribosome Assembly prot 99.8 7E-19 1.5E-23 176.2 21.7 265 332-607 140-431 (440)
164 KOG0307 Vesicle coat complex C 99.8 9.9E-20 2.2E-24 208.3 16.8 260 336-618 57-330 (1049)
165 KOG0303 Actin-binding protein 99.8 1.3E-18 2.8E-23 175.2 21.9 235 400-641 76-321 (472)
166 KOG4497 Uncharacterized conser 99.8 1.8E-18 3.9E-23 169.8 22.3 409 410-945 13-426 (447)
167 KOG1009 Chromatin assembly com 99.8 4.1E-18 8.9E-23 172.8 25.6 300 769-1101 13-375 (434)
168 KOG4328 WD40 protein [Function 99.8 2.2E-18 4.9E-23 177.1 23.9 310 481-909 173-495 (498)
169 KOG0302 Ribosome Assembly prot 99.8 1.3E-18 2.9E-23 174.2 20.1 245 401-652 147-432 (440)
170 KOG1524 WD40 repeat-containing 99.8 3.3E-17 7E-22 171.1 30.1 499 403-1101 12-526 (737)
171 KOG0270 WD40 repeat-containing 99.8 1.5E-18 3.3E-23 177.9 19.5 262 344-620 174-454 (463)
172 KOG4378 Nuclear protein COP1 [ 99.8 2.6E-18 5.6E-23 177.5 21.0 285 365-678 11-299 (673)
173 KOG1912 WD40 repeat protein [G 99.8 1.7E-16 3.6E-21 173.0 35.2 537 342-1044 14-656 (1062)
174 KOG0303 Actin-binding protein 99.8 6.8E-18 1.5E-22 170.1 21.9 218 442-668 73-303 (472)
175 KOG1524 WD40 repeat-containing 99.8 5.2E-17 1.1E-21 169.6 26.9 271 342-656 13-283 (737)
176 KOG4497 Uncharacterized conser 99.8 5E-17 1.1E-21 159.8 24.4 379 543-1091 13-425 (447)
177 KOG2919 Guanine nucleotide-bin 99.8 5E-17 1.1E-21 159.6 23.7 270 313-606 53-361 (406)
178 KOG1912 WD40 repeat protein [G 99.8 1.4E-15 3E-20 166.0 34.1 563 406-1100 16-658 (1062)
179 KOG4227 WD40 repeat protein [G 99.8 7.9E-17 1.7E-21 161.6 22.1 294 341-658 54-386 (609)
180 KOG1310 WD40 repeat protein [G 99.8 3.9E-17 8.5E-22 171.0 20.5 240 400-668 45-312 (758)
181 KOG0290 Conserved WD40 repeat- 99.8 2.3E-16 4.9E-21 152.8 24.1 291 335-655 36-361 (364)
182 KOG0649 WD40 repeat protein [G 99.8 6.1E-16 1.3E-20 145.9 25.7 278 345-656 12-313 (325)
183 KOG0642 Cell-cycle nuclear pro 99.8 1.1E-17 2.4E-22 176.9 15.3 251 401-661 290-563 (577)
184 KOG0649 WD40 repeat protein [G 99.7 9.5E-16 2.1E-20 144.6 26.0 288 771-1095 12-313 (325)
185 KOG0642 Cell-cycle nuclear pro 99.7 1.8E-17 3.9E-22 175.3 15.8 267 339-626 289-572 (577)
186 KOG0322 G-protein beta subunit 99.7 3.5E-17 7.7E-22 156.3 15.5 250 336-614 6-322 (323)
187 KOG1188 WD40 repeat protein [G 99.7 6.4E-17 1.4E-21 160.6 17.9 291 466-798 42-345 (376)
188 KOG1188 WD40 repeat protein [G 99.7 1.2E-16 2.5E-21 158.7 19.7 275 358-660 42-347 (376)
189 KOG0644 Uncharacterized conser 99.7 8.7E-18 1.9E-22 184.3 12.7 277 341-661 188-470 (1113)
190 KOG1334 WD40 repeat protein [G 99.7 3.1E-17 6.8E-22 169.9 14.8 299 336-661 134-468 (559)
191 KOG0322 G-protein beta subunit 99.7 9.5E-17 2E-21 153.4 16.8 305 578-950 8-322 (323)
192 KOG1007 WD repeat protein TSSC 99.7 1.5E-16 3.4E-21 153.7 18.4 216 333-571 111-360 (370)
193 KOG0771 Prolactin regulatory e 99.7 6.4E-17 1.4E-21 165.9 15.8 199 882-1099 148-355 (398)
194 KOG1007 WD repeat protein TSSC 99.7 8.8E-16 1.9E-20 148.6 21.8 268 364-658 38-360 (370)
195 KOG1587 Cytoplasmic dynein int 99.7 2.4E-15 5.2E-20 169.1 27.7 250 404-661 241-518 (555)
196 KOG1587 Cytoplasmic dynein int 99.7 1.8E-15 3.9E-20 170.1 26.0 271 325-616 225-517 (555)
197 PRK11028 6-phosphogluconolacto 99.7 1.9E-14 4.2E-19 160.1 33.7 272 358-659 4-304 (330)
198 KOG4227 WD40 repeat protein [G 99.7 2.8E-15 6E-20 150.6 23.6 313 766-1101 53-390 (609)
199 KOG2110 Uncharacterized conser 99.7 5.3E-14 1.2E-18 141.7 31.7 240 405-661 5-250 (391)
200 KOG0644 Uncharacterized conser 99.7 4.4E-17 9.6E-22 178.8 9.6 237 835-1101 189-429 (1113)
201 PRK11028 6-phosphogluconolacto 99.7 3.8E-14 8.3E-19 157.7 33.5 269 319-615 9-304 (330)
202 KOG1517 Guanine nucleotide bin 99.7 4E-15 8.7E-20 167.9 25.2 305 452-912 1066-1384(1387)
203 KOG1240 Protein kinase contain 99.7 2.2E-14 4.8E-19 164.9 28.9 255 401-661 1044-1336(1431)
204 KOG1517 Guanine nucleotide bin 99.7 1.4E-14 3E-19 163.6 26.7 261 770-1047 1110-1384(1387)
205 COG4946 Uncharacterized protei 99.7 7.7E-12 1.7E-16 129.7 43.3 142 770-940 360-507 (668)
206 PRK01742 tolB translocation pr 99.7 1.1E-14 2.4E-19 166.8 24.4 235 365-640 183-426 (429)
207 KOG0290 Conserved WD40 repeat- 99.6 1.9E-14 4.2E-19 139.6 21.2 252 339-611 92-361 (364)
208 KOG0974 WD-repeat protein WDR6 99.6 3.8E-12 8.2E-17 145.4 42.7 197 344-573 88-289 (967)
209 KOG0771 Prolactin regulatory e 99.6 2E-15 4.4E-20 155.0 14.7 197 841-1045 148-355 (398)
210 PF02239 Cytochrom_D1: Cytochr 99.6 4.2E-13 9E-18 147.9 32.1 322 510-958 8-354 (369)
211 KOG2110 Uncharacterized conser 99.6 1.2E-13 2.7E-18 139.1 24.9 240 837-1101 5-251 (391)
212 KOG1523 Actin-related protein 99.6 4.1E-14 8.9E-19 139.6 20.7 238 342-606 9-269 (361)
213 KOG1240 Protein kinase contain 99.6 8.9E-14 1.9E-18 160.0 25.7 269 332-616 1036-1335(1431)
214 PF02239 Cytochrom_D1: Cytochr 99.6 8.7E-12 1.9E-16 137.5 38.6 333 464-918 6-356 (369)
215 KOG2321 WD40 repeat protein [G 99.6 1.5E-13 3.2E-18 145.8 22.9 286 335-659 43-343 (703)
216 KOG2139 WD40 repeat protein [G 99.6 7E-13 1.5E-17 132.9 26.3 285 343-659 98-431 (445)
217 COG4946 Uncharacterized protei 99.6 2.2E-10 4.8E-15 119.1 44.5 516 332-1045 67-655 (668)
218 KOG2111 Uncharacterized conser 99.6 4.4E-12 9.5E-17 125.6 30.5 238 407-661 7-258 (346)
219 KOG1523 Actin-related protein 99.6 2E-13 4.2E-18 134.9 20.5 235 404-650 9-269 (361)
220 PF04762 IKI3: IKI3 family; I 99.6 1.1E-08 2.4E-13 125.5 66.2 534 404-1048 74-688 (928)
221 KOG1272 WD40-repeat-containing 99.6 8.1E-15 1.7E-19 151.3 11.1 280 343-661 129-411 (545)
222 KOG0974 WD-repeat protein WDR6 99.6 2.7E-11 5.9E-16 138.6 40.1 278 344-661 8-290 (967)
223 PRK01742 tolB translocation pr 99.6 1.5E-13 3.2E-18 157.5 22.1 221 338-596 197-426 (429)
224 KOG2041 WD40 repeat protein [G 99.6 8.7E-12 1.9E-16 135.3 33.6 570 342-1047 13-622 (1189)
225 PRK03629 tolB translocation pr 99.5 2.5E-12 5.3E-17 146.9 29.8 237 367-639 180-427 (429)
226 KOG2139 WD40 repeat protein [G 99.5 2.9E-12 6.4E-17 128.5 26.0 261 769-1045 140-432 (445)
227 KOG1334 WD40 repeat protein [G 99.5 1.7E-13 3.6E-18 142.7 17.2 298 766-1104 139-472 (559)
228 KOG2111 Uncharacterized conser 99.5 2.1E-12 4.5E-17 127.8 23.5 242 837-1101 5-259 (346)
229 KOG2394 WD40 protein DMR-N9 [G 99.5 4.4E-13 9.5E-18 141.2 19.0 118 837-955 290-456 (636)
230 KOG1310 WD40 repeat protein [G 99.5 1E-13 2.2E-18 145.7 13.8 242 338-623 44-311 (758)
231 KOG2041 WD40 repeat protein [G 99.5 1.3E-10 2.7E-15 126.5 36.3 521 336-999 63-618 (1189)
232 PRK05137 tolB translocation pr 99.5 7.4E-12 1.6E-16 144.2 29.2 237 366-639 182-432 (435)
233 KOG1272 WD40-repeat-containing 99.5 7E-14 1.5E-18 144.5 10.8 232 405-657 129-360 (545)
234 KOG2394 WD40 protein DMR-N9 [G 99.5 2.3E-12 4.9E-17 135.9 21.7 253 344-638 124-383 (636)
235 PRK03629 tolB translocation pr 99.5 4.7E-12 1E-16 144.6 26.1 236 326-595 181-427 (429)
236 PRK04922 tolB translocation pr 99.5 3.6E-12 7.9E-17 146.5 25.3 238 366-639 184-432 (433)
237 KOG3881 Uncharacterized conser 99.5 4E-12 8.7E-17 129.3 21.9 272 343-639 55-341 (412)
238 PRK02889 tolB translocation pr 99.5 6.5E-12 1.4E-16 143.8 26.6 223 402-639 192-424 (427)
239 KOG2315 Predicted translation 99.5 9E-11 1.9E-15 125.4 32.7 229 841-1099 129-391 (566)
240 PRK04922 tolB translocation pr 99.5 5.9E-12 1.3E-16 144.7 25.0 236 326-595 186-432 (433)
241 KOG1409 Uncharacterized conser 99.5 6.7E-12 1.5E-16 125.3 21.1 341 576-1045 16-395 (404)
242 PRK02889 tolB translocation pr 99.5 8.3E-12 1.8E-16 142.9 25.3 238 324-595 176-424 (427)
243 PF04762 IKI3: IKI3 family; I 99.5 7.1E-08 1.5E-12 118.5 60.2 516 406-1098 22-639 (928)
244 KOG2315 Predicted translation 99.5 9.4E-11 2E-15 125.2 29.9 335 538-953 34-392 (566)
245 KOG1832 HIV-1 Vpr-binding prot 99.4 2.2E-13 4.9E-18 150.7 10.2 219 337-603 1094-1319(1516)
246 KOG2314 Translation initiation 99.4 1E-10 2.3E-15 124.0 26.3 318 312-661 213-575 (698)
247 PRK05137 tolB translocation pr 99.4 1.2E-10 2.6E-15 134.3 29.5 218 427-661 182-414 (435)
248 KOG2321 WD40 repeat protein [G 99.4 4.1E-11 8.9E-16 127.6 22.8 201 448-661 49-260 (703)
249 COG5354 Uncharacterized protei 99.4 4.9E-10 1.1E-14 118.2 30.1 360 521-1036 15-421 (561)
250 COG2706 3-carboxymuconate cycl 99.4 1.5E-09 3.1E-14 110.9 32.2 278 741-1048 15-327 (346)
251 COG2706 3-carboxymuconate cycl 99.4 1.7E-09 3.7E-14 110.4 32.3 256 837-1108 39-331 (346)
252 KOG1354 Serine/threonine prote 99.4 2.6E-10 5.7E-15 114.0 24.6 190 450-661 25-246 (433)
253 KOG3881 Uncharacterized conser 99.4 8.5E-11 1.8E-15 119.9 20.7 247 404-663 54-324 (412)
254 PF10282 Lactonase: Lactonase, 99.4 1.3E-08 2.9E-13 113.0 40.5 231 420-658 2-274 (345)
255 PF08662 eIF2A: Eukaryotic tra 99.3 6.6E-11 1.4E-15 118.2 19.5 111 837-953 59-181 (194)
256 COG5354 Uncharacterized protei 99.3 9E-10 2E-14 116.2 28.4 314 311-661 34-397 (561)
257 PRK01029 tolB translocation pr 99.3 3.7E-10 8.1E-15 128.4 26.8 226 342-597 183-426 (428)
258 PRK01029 tolB translocation pr 99.3 9E-10 2E-14 125.2 29.3 226 403-641 182-426 (428)
259 PF08662 eIF2A: Eukaryotic tra 99.3 1.6E-10 3.5E-15 115.5 20.4 162 409-579 9-185 (194)
260 PF10282 Lactonase: Lactonase, 99.3 1.1E-08 2.4E-13 113.6 37.2 247 405-659 36-322 (345)
261 PRK04792 tolB translocation pr 99.3 6.6E-10 1.4E-14 127.5 28.2 222 402-639 214-446 (448)
262 PRK00178 tolB translocation pr 99.3 1E-09 2.2E-14 126.9 30.2 222 402-639 195-427 (430)
263 PRK00178 tolB translocation pr 99.3 4.5E-10 9.8E-15 129.9 26.8 237 326-595 181-427 (430)
264 TIGR02658 TTQ_MADH_Hv methylam 99.3 4.7E-09 1E-13 112.6 31.2 239 845-1102 53-334 (352)
265 TIGR02658 TTQ_MADH_Hv methylam 99.3 2E-08 4.3E-13 107.9 35.8 203 841-1052 108-338 (352)
266 PRK04792 tolB translocation pr 99.3 4.1E-10 8.9E-15 129.2 24.6 223 340-595 214-446 (448)
267 TIGR02800 propeller_TolB tol-p 99.3 1.2E-09 2.6E-14 126.5 28.8 210 401-624 185-405 (417)
268 KOG1354 Serine/threonine prote 99.3 5.5E-10 1.2E-14 111.7 21.3 263 341-618 23-362 (433)
269 TIGR02800 propeller_TolB tol-p 99.3 1.2E-09 2.6E-14 126.5 26.2 223 326-581 172-405 (417)
270 KOG0280 Uncharacterized conser 99.2 1.1E-09 2.4E-14 107.5 20.8 254 342-617 68-335 (339)
271 KOG4547 WD40 repeat-containing 99.2 7E-10 1.5E-14 119.8 20.7 193 415-616 3-221 (541)
272 KOG2314 Translation initiation 99.2 2.2E-09 4.7E-14 114.2 23.5 326 728-1098 217-573 (698)
273 KOG2659 LisH motif-containing 99.2 2.5E-10 5.3E-15 110.2 12.7 169 3-182 24-204 (228)
274 TIGR03300 assembly_YfgL outer 99.2 2.4E-08 5.2E-13 113.5 30.4 305 509-948 66-376 (377)
275 TIGR03300 assembly_YfgL outer 99.1 8.5E-08 1.8E-12 109.0 33.2 184 466-662 67-262 (377)
276 KOG4547 WD40 repeat-containing 99.1 1.2E-08 2.7E-13 110.4 24.0 190 357-572 6-220 (541)
277 KOG1409 Uncharacterized conser 99.1 4.2E-09 9.1E-14 105.7 18.9 214 445-673 19-241 (404)
278 PLN02919 haloacid dehalogenase 99.1 8.7E-08 1.9E-12 120.2 31.5 257 841-1101 571-891 (1057)
279 KOG1064 RAVE (regulator of V-A 99.0 1.4E-09 3.1E-14 130.4 13.1 201 401-625 2204-2408(2439)
280 KOG0280 Uncharacterized conser 99.0 4.3E-08 9.3E-13 96.6 20.7 249 404-661 68-335 (339)
281 KOG0309 Conserved WD40 repeat- 99.0 3.2E-09 6.8E-14 116.5 13.8 283 310-616 25-340 (1081)
282 KOG4190 Uncharacterized conser 99.0 2.5E-09 5.5E-14 113.0 10.8 246 398-657 728-986 (1034)
283 PLN02919 haloacid dehalogenase 99.0 7E-07 1.5E-11 112.3 34.2 74 881-955 806-892 (1057)
284 KOG1064 RAVE (regulator of V-A 99.0 5.2E-09 1.1E-13 125.8 14.3 145 770-956 2252-2403(2439)
285 PRK04043 tolB translocation pr 98.9 2.9E-07 6.4E-12 103.9 25.9 197 344-573 188-401 (419)
286 PF15492 Nbas_N: Neuroblastoma 98.9 8.1E-07 1.8E-11 88.5 24.1 189 837-1055 43-270 (282)
287 KOG4532 WD40-like repeat conta 98.8 4.5E-07 9.7E-12 88.3 19.5 148 408-557 161-321 (344)
288 KOG0309 Conserved WD40 repeat- 98.8 7.6E-08 1.7E-12 106.0 15.6 300 332-661 13-341 (1081)
289 PRK11138 outer membrane biogen 98.8 7.6E-06 1.6E-10 93.3 31.7 188 466-662 71-277 (394)
290 KOG3914 WD repeat protein WDR4 98.8 5.7E-08 1.2E-12 100.4 12.6 165 345-535 64-232 (390)
291 PRK11138 outer membrane biogen 98.8 4.8E-06 1E-10 94.9 29.7 309 509-950 70-393 (394)
292 KOG3617 WD40 and TPR repeat-co 98.8 1.6E-06 3.5E-11 97.2 24.1 222 410-656 20-256 (1416)
293 KOG1897 Damage-specific DNA bi 98.8 0.0012 2.6E-08 77.0 48.4 285 772-1104 586-904 (1096)
294 PF15492 Nbas_N: Neuroblastoma 98.7 4.7E-06 1E-10 83.2 23.5 233 843-1106 3-269 (282)
295 PRK04043 tolB translocation pr 98.7 6.9E-06 1.5E-10 92.9 28.2 197 452-660 189-401 (419)
296 KOG4532 WD40-like repeat conta 98.7 3.3E-06 7.1E-11 82.4 20.8 238 849-1099 84-332 (344)
297 KOG4714 Nucleoporin [Nuclear s 98.7 2.9E-07 6.3E-12 89.2 13.4 209 346-573 39-255 (319)
298 PF08450 SGL: SMP-30/Gluconola 98.7 2.1E-05 4.6E-10 83.2 29.4 219 410-648 4-244 (246)
299 COG5170 CDC55 Serine/threonine 98.7 5.2E-07 1.1E-11 89.4 15.3 252 404-672 25-322 (460)
300 PF07433 DUF1513: Protein of u 98.7 1.3E-05 2.9E-10 82.9 26.1 209 839-1053 6-256 (305)
301 KOG3914 WD repeat protein WDR4 98.7 3.1E-07 6.8E-12 95.1 14.1 159 924-1102 65-227 (390)
302 KOG4190 Uncharacterized conser 98.7 1.9E-07 4E-12 99.3 12.2 272 730-1040 745-1032(1034)
303 KOG4649 PQQ (pyrrolo-quinoline 98.6 5.8E-05 1.3E-09 73.7 27.4 143 351-521 18-160 (354)
304 KOG1832 HIV-1 Vpr-binding prot 98.6 2.3E-08 5E-13 111.9 4.9 216 401-647 1097-1319(1516)
305 KOG0882 Cyclophilin-related pe 98.6 2.3E-06 5E-11 89.5 18.3 214 448-670 7-241 (558)
306 PF13360 PQQ_2: PQQ-like domai 98.6 8.1E-06 1.8E-10 86.2 23.4 224 857-1105 2-237 (238)
307 PF08450 SGL: SMP-30/Gluconola 98.6 9.7E-05 2.1E-09 78.2 31.4 221 348-604 4-244 (246)
308 KOG1645 RING-finger-containing 98.6 1.1E-05 2.3E-10 83.6 22.3 249 400-659 188-461 (463)
309 COG5170 CDC55 Serine/threonine 98.6 1.6E-06 3.4E-11 86.1 15.2 255 342-613 25-365 (460)
310 PF13360 PQQ_2: PQQ-like domai 98.6 1.9E-05 4.2E-10 83.4 24.4 221 426-664 2-235 (238)
311 PF07433 DUF1513: Protein of u 98.6 8.9E-05 1.9E-09 76.9 27.8 230 409-653 8-279 (305)
312 KOG0882 Cyclophilin-related pe 98.5 2.3E-06 5E-11 89.5 15.9 255 404-669 8-314 (558)
313 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00048 1E-08 67.5 29.9 140 509-657 24-163 (354)
314 KOG0396 Uncharacterized conser 98.5 1.4E-06 3E-11 89.4 12.5 120 5-125 115-242 (389)
315 PRK02888 nitrous-oxide reducta 98.5 2.1E-05 4.6E-10 89.0 23.1 104 845-952 284-405 (635)
316 KOG2695 WD40 repeat protein [G 98.5 4.3E-07 9.4E-12 91.6 8.7 166 348-537 216-387 (425)
317 PF06433 Me-amine-dh_H: Methyl 98.5 8.4E-05 1.8E-09 77.9 25.7 285 564-919 17-330 (342)
318 PF00930 DPPIV_N: Dipeptidyl p 98.5 6.3E-05 1.4E-09 84.1 26.6 268 352-649 1-347 (353)
319 KOG4714 Nucleoporin [Nuclear s 98.4 2.1E-06 4.5E-11 83.4 10.9 198 881-1099 39-255 (319)
320 KOG1920 IkappaB kinase complex 98.4 8.5E-05 1.8E-09 88.1 25.8 278 344-658 69-364 (1265)
321 KOG1275 PAB-dependent poly(A) 98.4 4.8E-06 1E-10 94.8 14.9 181 848-1042 146-340 (1118)
322 PF00400 WD40: WD domain, G-be 98.4 1E-06 2.2E-11 62.0 6.1 39 911-949 1-39 (39)
323 KOG1920 IkappaB kinase complex 98.4 0.00075 1.6E-08 80.4 32.7 275 587-951 70-365 (1265)
324 KOG2695 WD40 repeat protein [G 98.4 1.2E-06 2.6E-11 88.4 8.7 163 456-627 217-388 (425)
325 KOG1897 Damage-specific DNA bi 98.4 0.013 2.9E-07 68.7 56.7 229 849-1101 684-945 (1096)
326 KOG3617 WD40 and TPR repeat-co 98.4 1.3E-05 2.9E-10 90.1 16.9 335 589-1077 19-365 (1416)
327 PF06433 Me-amine-dh_H: Methyl 98.3 0.00037 8.1E-09 73.2 26.4 205 841-1053 98-329 (342)
328 PRK02888 nitrous-oxide reducta 98.3 0.00015 3.2E-09 82.4 24.8 183 843-1045 198-405 (635)
329 PF10607 CLTH: CTLH/CRA C-term 98.3 2.7E-06 5.9E-11 81.2 9.6 133 38-181 5-140 (145)
330 KOG3621 WD40 repeat-containing 98.3 7.8E-05 1.7E-09 83.3 21.8 284 342-663 32-357 (726)
331 PF00400 WD40: WD domain, G-be 98.3 3.4E-06 7.3E-11 59.3 6.6 39 868-907 1-39 (39)
332 KOG2114 Vacuolar assembly/sort 98.2 0.00014 3.1E-09 83.0 21.4 198 843-1048 29-247 (933)
333 KOG2114 Vacuolar assembly/sort 98.2 9.5E-05 2.1E-09 84.4 19.8 205 885-1106 30-251 (933)
334 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00048 1E-08 77.0 25.8 296 547-939 1-345 (353)
335 KOG1645 RING-finger-containing 98.2 8.5E-05 1.8E-09 77.2 17.7 249 337-615 186-461 (463)
336 PF14583 Pectate_lyase22: Olig 98.1 0.011 2.5E-07 63.6 32.6 299 330-658 16-380 (386)
337 KOG2066 Vacuolar assembly/sort 98.1 6.1E-05 1.3E-09 85.3 15.8 188 878-1098 39-233 (846)
338 KOG2066 Vacuolar assembly/sort 98.1 0.00037 8.1E-09 79.2 20.5 185 772-1000 42-233 (846)
339 PF08513 LisH: LisH; InterPro 98.0 6.1E-06 1.3E-10 51.2 3.7 27 6-32 1-27 (27)
340 KOG1275 PAB-dependent poly(A) 98.0 0.0001 2.3E-09 84.4 15.8 185 466-658 149-341 (1118)
341 cd00216 PQQ_DH Dehydrogenases 98.0 0.006 1.3E-07 71.3 30.9 110 509-625 62-193 (488)
342 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.028 6.1E-07 65.9 36.0 110 509-624 70-198 (527)
343 KOG3621 WD40 repeat-containing 98.0 0.0006 1.3E-08 76.5 20.7 282 768-1101 32-356 (726)
344 PF08596 Lgl_C: Lethal giant l 98.0 0.0026 5.6E-08 70.9 25.3 252 345-603 3-324 (395)
345 PF14583 Pectate_lyase22: Olig 98.0 0.0096 2.1E-07 64.2 28.0 227 412-650 42-303 (386)
346 PF11768 DUF3312: Protein of u 97.9 0.00068 1.5E-08 75.2 19.4 115 837-954 205-332 (545)
347 PF11768 DUF3312: Protein of u 97.9 0.00049 1.1E-08 76.3 17.9 131 332-485 194-332 (545)
348 PF08596 Lgl_C: Lethal giant l 97.9 0.0081 1.7E-07 67.0 27.4 242 407-658 3-334 (395)
349 PF04053 Coatomer_WDAD: Coatom 97.9 0.0018 3.9E-08 73.1 22.4 220 837-1101 32-265 (443)
350 PF02897 Peptidase_S9_N: Proly 97.9 0.012 2.6E-07 67.9 29.5 249 345-620 125-409 (414)
351 smart00667 LisH Lissencephaly 97.8 2.3E-05 4.9E-10 53.0 4.1 32 4-35 2-33 (34)
352 cd00216 PQQ_DH Dehydrogenases 97.8 0.0078 1.7E-07 70.4 27.8 276 359-665 64-430 (488)
353 smart00668 CTLH C-terminal to 97.8 1.4E-05 3.1E-10 62.0 3.2 52 38-90 5-56 (58)
354 COG0823 TolB Periplasmic compo 97.8 0.0014 3.1E-08 73.7 20.4 180 858-1052 173-366 (425)
355 PF06977 SdiA-regulated: SdiA- 97.8 0.01 2.2E-07 61.1 24.3 191 343-556 21-239 (248)
356 PF04053 Coatomer_WDAD: Coatom 97.8 0.0036 7.7E-08 70.7 22.1 224 403-661 30-264 (443)
357 PF06977 SdiA-regulated: SdiA- 97.7 0.0056 1.2E-07 63.0 21.4 202 837-1041 21-247 (248)
358 PF04841 Vps16_N: Vps16, N-ter 97.7 0.016 3.4E-07 65.7 27.0 198 843-1053 34-255 (410)
359 COG0823 TolB Periplasmic compo 97.7 0.0019 4.2E-08 72.6 19.4 196 334-558 182-389 (425)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.18 3.9E-06 59.2 35.5 196 417-620 69-338 (527)
361 COG3391 Uncharacterized conser 97.6 0.11 2.4E-06 58.6 31.4 270 330-626 17-294 (381)
362 KOG1008 Uncharacterized conser 97.5 3.2E-05 6.9E-10 85.0 1.8 205 342-572 55-275 (783)
363 COG3391 Uncharacterized conser 97.5 0.031 6.7E-07 63.0 24.9 205 840-1053 76-292 (381)
364 COG3490 Uncharacterized protei 97.5 0.03 6.6E-07 56.3 20.8 235 841-1096 71-346 (366)
365 PF04841 Vps16_N: Vps16, N-ter 97.5 0.13 2.8E-06 58.5 29.3 232 406-671 81-325 (410)
366 PF00780 CNH: CNH domain; Int 97.4 0.13 2.8E-06 55.5 28.1 230 416-672 6-267 (275)
367 PRK13616 lipoprotein LpqB; Pro 97.4 0.0066 1.4E-07 71.5 19.1 189 838-1040 350-564 (591)
368 cd08044 TAF5_NTD2 TAF5_NTD2 is 97.4 0.00028 6.1E-09 65.3 6.2 82 67-149 25-113 (133)
369 KOG1008 Uncharacterized conser 97.4 0.00021 4.6E-09 78.8 5.8 248 837-1097 56-334 (783)
370 PF02897 Peptidase_S9_N: Proly 97.4 0.18 4E-06 58.0 30.6 245 407-662 125-407 (414)
371 PRK13616 lipoprotein LpqB; Pro 97.3 0.036 7.9E-07 65.4 23.8 202 877-1106 348-576 (591)
372 KOG2817 Predicted E3 ubiquitin 97.3 0.0018 3.8E-08 68.3 10.7 115 5-120 116-242 (394)
373 PF00780 CNH: CNH domain; Int 97.2 0.18 3.8E-06 54.4 26.5 229 354-626 6-266 (275)
374 COG3490 Uncharacterized protei 97.2 0.099 2.1E-06 52.8 21.4 108 542-655 71-185 (366)
375 PF08553 VID27: VID27 cytoplas 97.2 0.019 4.1E-07 68.5 19.5 147 890-1044 492-647 (794)
376 PF03178 CPSF_A: CPSF A subuni 97.2 0.058 1.3E-06 59.6 22.7 142 417-572 42-202 (321)
377 TIGR03074 PQQ_membr_DH membran 97.2 1 2.2E-05 54.9 40.8 199 466-664 196-482 (764)
378 COG3386 Gluconolactonase [Carb 97.2 0.17 3.7E-06 54.3 24.8 221 412-649 31-275 (307)
379 PF04494 TFIID_90kDa: WD40 ass 97.2 0.00042 9.1E-09 64.9 4.3 98 67-178 36-140 (142)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.16 3.4E-06 56.5 23.7 85 538-626 307-409 (415)
381 COG3386 Gluconolactonase [Carb 97.0 0.18 4E-06 54.1 23.4 225 348-604 29-274 (307)
382 PF05096 Glu_cyclase_2: Glutam 97.0 0.11 2.5E-06 53.1 19.8 200 839-1090 46-253 (264)
383 KOG2395 Protein involved in va 96.9 0.034 7.4E-07 60.8 16.0 145 893-1044 348-500 (644)
384 PF03178 CPSF_A: CPSF A subuni 96.8 0.24 5.2E-06 54.7 23.4 217 427-657 2-263 (321)
385 KOG4640 Anaphase-promoting com 96.8 0.0046 1E-07 68.8 9.3 93 879-980 21-114 (665)
386 PRK10115 protease 2; Provision 96.8 1.9 4.1E-05 52.7 32.5 244 407-661 128-396 (686)
387 PF14870 PSII_BNR: Photosynthe 96.8 0.34 7.3E-06 51.7 22.5 193 841-1041 107-301 (302)
388 smart00320 WD40 WD40 repeats. 96.7 0.0034 7.4E-08 43.2 5.2 39 911-949 2-40 (40)
389 KOG2395 Protein involved in va 96.7 0.041 9E-07 60.2 15.2 144 463-614 345-499 (644)
390 KOG4640 Anaphase-promoting com 96.7 0.0064 1.4E-07 67.7 9.2 92 837-930 20-114 (665)
391 PF08553 VID27: VID27 cytoplas 96.7 0.048 1E-06 65.2 16.9 146 462-614 492-646 (794)
392 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.14 2.9E-06 44.6 14.8 102 408-521 2-109 (111)
393 PF05694 SBP56: 56kDa selenium 96.6 0.51 1.1E-05 51.7 22.1 238 780-1033 86-392 (461)
394 PF05694 SBP56: 56kDa selenium 96.6 0.49 1.1E-05 51.8 21.7 150 507-656 86-274 (461)
395 PF14655 RAB3GAP2_N: Rab3 GTPa 96.5 1.3 2.9E-05 49.4 25.6 82 837-918 307-407 (415)
396 PF10647 Gmad1: Lipoprotein Lp 96.5 0.72 1.6E-05 48.5 22.9 151 880-1037 25-188 (253)
397 smart00320 WD40 WD40 repeats. 96.5 0.0069 1.5E-07 41.6 5.5 39 868-907 2-40 (40)
398 PF10647 Gmad1: Lipoprotein Lp 96.5 0.36 7.8E-06 50.8 20.5 160 838-1004 24-201 (253)
399 PF07995 GSDH: Glucose / Sorbo 96.5 1.9 4.1E-05 47.5 27.0 113 345-474 3-135 (331)
400 PF07995 GSDH: Glucose / Sorbo 96.5 0.75 1.6E-05 50.7 23.5 244 840-1093 4-330 (331)
401 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.14 3.1E-06 44.5 13.3 102 346-477 2-109 (111)
402 PHA02713 hypothetical protein; 96.3 0.42 9E-06 56.9 21.8 228 859-1115 273-548 (557)
403 KOG4441 Proteins containing BT 96.3 0.39 8.6E-06 56.9 21.3 232 416-661 284-548 (571)
404 KOG2079 Vacuolar assembly/sort 96.3 0.053 1.1E-06 64.6 13.4 104 416-525 98-202 (1206)
405 PF14727 PHTB1_N: PTHB1 N-term 96.1 3.3 7.2E-05 46.4 31.9 291 781-1109 37-371 (418)
406 PF15390 DUF4613: Domain of un 96.1 0.1 2.3E-06 58.3 13.8 158 878-1046 19-188 (671)
407 PHA02713 hypothetical protein; 96.0 0.45 9.8E-06 56.6 20.0 201 461-672 303-545 (557)
408 COG3204 Uncharacterized protei 95.9 1.7 3.6E-05 44.9 20.3 201 768-995 84-307 (316)
409 PRK10115 protease 2; Provision 95.9 6.4 0.00014 48.2 33.7 243 345-618 128-397 (686)
410 KOG2079 Vacuolar assembly/sort 95.8 0.025 5.5E-07 67.1 8.3 107 983-1101 99-206 (1206)
411 PF05096 Glu_cyclase_2: Glutam 95.8 2.9 6.2E-05 43.2 21.9 192 768-990 43-249 (264)
412 PF12894 Apc4_WD40: Anaphase-p 95.7 0.03 6.6E-07 40.3 5.4 36 1068-1105 12-47 (47)
413 KOG4499 Ca2+-binding protein R 95.6 1.5 3.2E-05 43.3 17.7 143 450-602 108-271 (310)
414 PF14727 PHTB1_N: PTHB1 N-term 95.6 5.2 0.00011 45.0 33.3 278 353-661 34-362 (418)
415 KOG2444 WD40 repeat protein [G 95.4 0.023 5.1E-07 55.5 5.1 101 984-1099 71-178 (238)
416 COG3823 Glutamine cyclotransfe 95.4 0.78 1.7E-05 44.4 14.9 190 848-1089 55-250 (262)
417 KOG2444 WD40 repeat protein [G 95.4 0.043 9.3E-07 53.8 6.9 104 849-952 70-178 (238)
418 KOG4441 Proteins containing BT 95.4 2 4.4E-05 51.0 22.3 233 358-619 287-550 (571)
419 TIGR03118 PEPCTERM_chp_1 conse 95.4 3.7 8E-05 42.8 20.5 206 881-1101 25-282 (336)
420 PF12894 Apc4_WD40: Anaphase-p 95.3 0.058 1.3E-06 38.9 5.7 32 404-435 10-41 (47)
421 COG3204 Uncharacterized protei 95.3 1.4 3E-05 45.5 17.3 174 917-1099 81-264 (316)
422 TIGR03074 PQQ_membr_DH membran 95.3 4.4 9.5E-05 49.7 24.9 158 466-624 262-486 (764)
423 KOG4499 Ca2+-binding protein R 95.2 1.2 2.7E-05 43.8 15.9 90 841-931 161-263 (310)
424 PF12234 Rav1p_C: RAVE protein 94.9 0.82 1.8E-05 53.6 16.5 112 452-571 31-155 (631)
425 PF14870 PSII_BNR: Photosynthe 94.6 7.7 0.00017 41.6 31.0 152 837-997 144-301 (302)
426 PF14761 HPS3_N: Hermansky-Pud 94.4 1.9 4.1E-05 42.7 15.1 176 892-1098 29-214 (215)
427 PF12234 Rav1p_C: RAVE protein 94.3 1 2.2E-05 52.9 15.3 124 872-999 23-155 (631)
428 COG4257 Vgb Streptogramin lyas 94.2 5.9 0.00013 40.4 18.1 208 881-1107 64-272 (353)
429 PRK13684 Ycf48-like protein; P 94.2 11 0.00023 41.7 30.9 157 878-1043 172-330 (334)
430 PHA03098 kelch-like protein; P 94.2 2.2 4.7E-05 51.1 18.9 151 508-661 343-513 (534)
431 PF10168 Nup88: Nuclear pore c 94.0 18 0.00038 44.2 25.5 95 837-954 84-182 (717)
432 PHA03098 kelch-like protein; P 93.9 2.9 6.4E-05 50.0 19.2 195 415-620 293-516 (534)
433 KOG3630 Nuclear pore complex, 93.6 0.6 1.3E-05 56.4 11.8 146 837-988 100-260 (1405)
434 KOG1898 Splicing factor 3b, su 93.6 24 0.00051 43.3 37.4 104 843-951 939-1048(1205)
435 TIGR03118 PEPCTERM_chp_1 conse 93.5 11 0.00025 39.4 23.3 212 452-670 24-289 (336)
436 KOG2280 Vacuolar assembly/sort 93.4 4.9 0.00011 46.9 18.1 147 900-1053 63-255 (829)
437 PLN00033 photosystem II stabil 93.1 19 0.0004 40.6 27.1 154 881-1041 241-396 (398)
438 KOG2280 Vacuolar assembly/sort 92.6 15 0.00032 43.2 20.4 179 407-595 85-269 (829)
439 TIGR02604 Piru_Ver_Nterm putat 92.2 3.7 8.1E-05 46.1 15.7 149 879-1033 14-202 (367)
440 PHA02790 Kelch-like protein; P 91.8 8.9 0.00019 44.9 18.8 184 847-1047 270-473 (480)
441 KOG2247 WD40 repeat-containing 91.8 0.044 9.5E-07 59.4 -0.3 244 773-1052 38-288 (615)
442 KOG4460 Nuclear pore complex, 91.7 2 4.4E-05 47.5 11.8 93 1015-1109 104-209 (741)
443 KOG3630 Nuclear pore complex, 91.7 1.7 3.7E-05 52.8 12.1 145 452-602 102-260 (1405)
444 KOG4460 Nuclear pore complex, 91.6 27 0.00059 39.2 21.7 209 880-1102 105-351 (741)
445 KOG2377 Uncharacterized conser 91.5 2.4 5.2E-05 46.1 11.9 123 342-484 65-187 (657)
446 KOG1916 Nuclear protein, conta 91.3 0.18 4E-06 58.8 3.9 179 858-1045 153-375 (1283)
447 TIGR02604 Piru_Ver_Nterm putat 91.0 5.8 0.00013 44.6 15.6 138 839-988 15-200 (367)
448 PF10168 Nup88: Nuclear pore c 91.0 2.9 6.3E-05 50.7 13.6 84 1014-1101 84-182 (717)
449 PHA02790 Kelch-like protein; P 90.8 12 0.00025 44.0 18.3 185 466-661 274-472 (480)
450 PRK13684 Ycf48-like protein; P 90.8 30 0.00065 38.2 30.9 152 494-657 172-329 (334)
451 PF02333 Phytase: Phytase; In 90.8 30 0.00065 38.2 23.1 188 466-661 70-292 (381)
452 TIGR03548 mutarot_permut cycli 90.3 32 0.0007 37.8 22.4 108 466-576 75-198 (323)
453 COG4257 Vgb Streptogramin lyas 90.3 24 0.00052 36.3 22.0 241 837-1108 61-316 (353)
454 KOG3616 Selective LIM binding 90.2 6.4 0.00014 45.5 14.2 87 863-955 323-409 (1636)
455 COG3823 Glutamine cyclotransfe 90.0 9 0.00019 37.4 13.0 147 507-661 55-206 (262)
456 PF15390 DUF4613: Domain of un 90.0 6.9 0.00015 44.5 14.2 146 838-999 20-185 (671)
457 PF10313 DUF2415: Uncharacteri 89.9 1.1 2.3E-05 31.4 5.0 32 406-437 1-35 (43)
458 PF11725 AvrE: Pathogenicity f 89.8 47 0.001 43.3 22.4 149 342-527 361-517 (1774)
459 PF10313 DUF2415: Uncharacteri 89.6 0.99 2.1E-05 31.6 4.8 32 879-910 1-34 (43)
460 PRK14131 N-acetylneuraminic ac 89.6 41 0.00089 38.0 21.5 40 609-650 314-353 (376)
461 COG3292 Predicted periplasmic 89.3 29 0.00062 39.6 18.1 275 342-655 163-443 (671)
462 KOG1916 Nuclear protein, conta 89.1 0.56 1.2E-05 55.0 5.3 168 342-531 131-328 (1283)
463 COG5167 VID27 Protein involved 89.0 13 0.00027 41.5 14.9 151 456-615 472-632 (776)
464 PF10433 MMS1_N: Mono-function 89.0 56 0.0012 38.7 33.9 390 349-888 49-503 (504)
465 KOG2377 Uncharacterized conser 88.9 21 0.00046 39.2 16.2 181 925-1126 26-210 (657)
466 PF03022 MRJP: Major royal jel 88.8 34 0.00073 36.8 18.4 194 840-1034 3-255 (287)
467 PF14781 BBS2_N: Ciliary BBSom 88.5 13 0.00027 33.9 12.1 113 881-1004 1-129 (136)
468 PF13449 Phytase-like: Esteras 88.5 44 0.00095 36.8 22.7 165 878-1044 19-249 (326)
469 KOG4659 Uncharacterized conser 88.4 82 0.0018 39.9 31.2 23 768-790 660-682 (1899)
470 PF08728 CRT10: CRT10; InterP 88.3 23 0.0005 42.4 17.7 116 407-525 102-245 (717)
471 COG4590 ABC-type uncharacteriz 88.1 2.3 4.9E-05 46.1 8.6 153 837-999 220-385 (733)
472 COG4590 ABC-type uncharacteriz 87.7 2.1 4.6E-05 46.3 8.1 171 869-1048 211-390 (733)
473 KOG1900 Nuclear pore complex, 87.4 6.6 0.00014 49.1 12.9 156 345-528 80-274 (1311)
474 PF07676 PD40: WD40-like Beta 87.0 2.4 5.2E-05 29.2 5.6 30 342-371 7-38 (39)
475 KOG1900 Nuclear pore complex, 86.7 16 0.00036 45.8 15.7 146 898-1045 96-273 (1311)
476 COG1520 FOG: WD40-like repeat 86.5 62 0.0013 36.4 23.6 226 417-657 68-303 (370)
477 PF11725 AvrE: Pathogenicity f 86.3 55 0.0012 42.7 20.1 66 972-1040 703-768 (1774)
478 PF13449 Phytase-like: Esteras 86.3 58 0.0012 35.9 22.6 171 770-951 20-249 (326)
479 COG5167 VID27 Protein involved 86.2 12 0.00025 41.7 12.6 158 884-1052 472-642 (776)
480 KOG1983 Tomosyn and related SN 85.6 39 0.00085 43.1 19.0 244 838-1116 36-281 (993)
481 TIGR03606 non_repeat_PQQ dehyd 85.5 74 0.0016 36.5 19.5 155 870-1031 21-246 (454)
482 PF12657 TFIIIC_delta: Transcr 85.0 5 0.00011 39.3 8.8 31 406-436 86-122 (173)
483 smart00036 CNH Domain found in 84.7 64 0.0014 35.0 25.8 258 777-1094 9-298 (302)
484 KOG2247 WD40 repeat-containing 84.4 0.31 6.6E-06 53.3 0.0 141 315-480 40-186 (615)
485 COG3292 Predicted periplasmic 84.3 85 0.0018 36.1 24.4 72 404-483 163-234 (671)
486 PF08728 CRT10: CRT10; InterP 84.0 4.9 0.00011 47.8 9.5 134 345-481 102-245 (717)
487 PF07569 Hira: TUP1-like enhan 83.9 4.3 9.3E-05 41.5 8.1 78 929-1006 18-101 (219)
488 TIGR03547 muta_rot_YjhT mutatr 83.7 78 0.0017 35.2 22.0 41 518-558 168-209 (346)
489 PF10214 Rrn6: RNA polymerase 83.6 1.3E+02 0.0028 37.7 27.4 173 837-1046 79-278 (765)
490 PF14761 HPS3_N: Hermansky-Pud 83.4 26 0.00057 34.9 12.7 162 733-908 29-213 (215)
491 KOG1898 Splicing factor 3b, su 83.2 1.3E+02 0.0028 37.4 36.3 108 977-1099 939-1049(1205)
492 KOG2063 Vacuolar assembly/sort 82.4 59 0.0013 40.2 17.7 249 775-1052 20-276 (877)
493 PF05935 Arylsulfotrans: Aryls 82.1 15 0.00032 43.0 12.6 131 977-1109 153-312 (477)
494 PF07569 Hira: TUP1-like enhan 81.8 7.7 0.00017 39.6 9.0 62 890-952 21-96 (219)
495 TIGR02276 beta_rpt_yvtn 40-res 81.6 6.6 0.00014 27.4 6.1 39 847-886 1-41 (42)
496 PF12657 TFIIIC_delta: Transcr 80.9 7.8 0.00017 38.0 8.4 31 922-952 86-122 (173)
497 PF07250 Glyoxal_oxid_N: Glyox 80.5 28 0.0006 36.0 12.3 145 521-669 49-206 (243)
498 TIGR03548 mutarot_permut cycli 80.4 97 0.0021 34.1 19.2 110 509-620 74-199 (323)
499 COG5290 IkappaB kinase complex 79.9 62 0.0013 38.5 15.7 256 835-1124 75-404 (1243)
500 KOG1983 Tomosyn and related SN 79.9 33 0.00071 43.8 15.2 72 537-619 197-268 (993)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-68 Score=532.38 Aligned_cols=490 Identities=21% Similarity=0.301 Sum_probs=406.7
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHcCCCcc---HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHHHH
Q 001176 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKY 81 (1132)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1132)
+.|++||+.|+|..+||.+|+.+||.|||+.++ .+.|.++++.|+|++++..+.... .++..-.+.+.|++++|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 468999999999999999999999999999886 899999999999999999988773 4444556679999999999
Q ss_pred HHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcc-cCccchhhhcccCCchhHHHHHHHHHHhhcccCcccccc
Q 001176 82 LEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTL-DNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDK 160 (1132)
Q Consensus 82 lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 160 (1132)
||++..|...+|+.+||+...++ -++.+++++|+.-+.. .++..++.-. -......|..|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 99999999999999999999988 5689999999886664 4443343321 223577899999999999999999
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 001176 161 LSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPV 240 (1132)
Q Consensus 161 ~~~~~~p~~rL~~ll~q~~~~q~~~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 240 (1132)
+|++||+.||+||++||+.+|.||| +.+..+||.||.|++ .+ +|. ++.++|++|++|
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------------~q----ip~-qt~qil~~htdE 226 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------------LQ----IPS-QTWQILQDHTDE 226 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------------cc----CCc-hhhhhHhhCCCc
Confidence 9999999999999999999999999 467789999999998 22 565 555556666655
Q ss_pred CCCCcccccccccCCCCCCCCCCccCCCCCCCCCCccccccccCCCCCCCCcccccccchhhHhhhcccCCcceeeecCC
Q 001176 241 VSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGV 320 (1132)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 320 (1132)
T Consensus 227 -------------------------------------------------------------------------------- 226 (519)
T KOG0293|consen 227 -------------------------------------------------------------------------------- 226 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccc
Q 001176 321 AHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 400 (1132)
Q Consensus 321 g~~~~~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1132)
||.+.||++|+ +||+++.|.+..||++.....+. +. ..
T Consensus 227 -------------------------VWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~k-----l~-----------~t 264 (519)
T KOG0293|consen 227 -------------------------VWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFK-----LK-----------KT 264 (519)
T ss_pred -------------------------EEEEEEcCCCe-eEeeccCCceEEEEEEecCccee-----ee-----------ee
Confidence 55555777777 57888888888888876543311 11 12
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|..+|..+.||||.++|++|+.|..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++..||
T Consensus 265 lvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 265 LVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWD 340 (519)
T ss_pred eecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEec
Confidence 67899999999999999999999999999999999998765332 24567899999999999 799999999999999
Q ss_pred CCCCeEEEEecCCC-CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 481 VVAGRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
+ +|..+..+++-. ..|.++++.+ ||.++++.+.|..|++++..+...+.. .....+|++.+.|.|++++++.-.
T Consensus 341 l-Dgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~- 415 (519)
T KOG0293|consen 341 L-DGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQ- 415 (519)
T ss_pred C-CcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcc-
Confidence 5 566666666643 5689999876 558999999999999999887655543 335668999999999999988764
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 637 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 637 (1132)
+..+++||++..+.++.+.||..+. |.++.-..+..++++|++|++|+||+..+++++..+.+|.. .|++++|
T Consensus 416 ---~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVsw 490 (519)
T KOG0293|consen 416 ---DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSW 490 (519)
T ss_pred ---cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEec
Confidence 6679999999999999999998753 44333334558899999999999999999999999998865 8999999
Q ss_pred cC-CCCEEEEEeCCCcEEEEEcCC
Q 001176 638 NK-EGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 638 s~-~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
+| +..++|++++||+||||....
T Consensus 491 NP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 491 NPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCCHHHhhccCCCCeEEEecCCc
Confidence 99 778999999999999998653
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-62 Score=472.42 Aligned_cols=489 Identities=20% Similarity=0.304 Sum_probs=403.3
Q ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHHcCCCcc----HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHH
Q 001176 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQ 79 (1132)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 79 (1132)
-+.+|||||.|||+|+.++++.++||+|+++++| ++.|-+.|.+|+||.++..+++| +++.+.+..||||
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHH
Confidence 4569999999999999999999999999999998 88999999999999999999988 6777789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhh--cccccccCHHHHHHHHHhhcccCccchhhhcccCCchhHHHHHHHHHHhhcccCccc
Q 001176 80 KYLEALDRQDRAKAVEILVKD--LKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLF 157 (1132)
Q Consensus 80 ~~lEll~~~~~~~A~~~l~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~ 157 (1132)
..|||+|.++...|..+||+. +.-|+..++++|-+|+.||..+.+++.+.+.+ ...+..|..+.+.|...+..
T Consensus 80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V---- 154 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV---- 154 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE----
Confidence 999999999999999999964 44456678999999999999999999998754 23455556666666554443
Q ss_pred ccccCCCCCcchHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 001176 158 RDKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH 237 (1132)
Q Consensus 158 ~~~~~~~~~p~~rL~~ll~q~~~~q~~~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 237 (1132)
+||+||+.||+|||+||+++.+.| | .++.+.|+|+-...
T Consensus 155 --------VppSRLlaLlGQaLKWQqHQGLLP---P---------------------Gt~iDLFRGkAA~K--------- 193 (508)
T KOG0275|consen 155 --------VPPSRLLALLGQALKWQQHQGLLP---P---------------------GTTIDLFRGKAAMK--------- 193 (508)
T ss_pred --------cChHHHHHHHHHHhhhHhhcCCCC---C---------------------Cceeeeccchhhhh---------
Confidence 899999999999999999988887 2 22233333333320
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCccCCCCCCCCCCccccccccCCCCCCCCcccccccchhhHhhhcccCCcceeee
Q 001176 238 GPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSF 317 (1132)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (1132)
.-+..++|+ ++...+++
T Consensus 194 ------------------------------------------~~~Ee~~Pt-------------~l~r~IKF-------- 210 (508)
T KOG0275|consen 194 ------------------------------------------DQEEERYPT-------------QLARSIKF-------- 210 (508)
T ss_pred ------------------------------------------hhHhhhchH-------------Hhhhheec--------
Confidence 001122222 12222222
Q ss_pred cCCCCCCceeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeeccccccccc
Q 001176 318 AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQ 397 (1132)
Q Consensus 318 ~~~g~~~~~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1132)
..++-+.|..|||||+ +|++|+.||.|.+||..+|+....- .++
T Consensus 211 -----------------------g~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDL------------kYQ 254 (508)
T KOG0275|consen 211 -----------------------GQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDL------------KYQ 254 (508)
T ss_pred -----------------------ccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhh------------hhh
Confidence 1345788999999999 6999999999999999999876431 111
Q ss_pred c-cccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeee-cccCCEEEEEEecCCCcEEEEEEcCCCc
Q 001176 398 N-ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKM 475 (1132)
Q Consensus 398 ~-~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~v~~v~~s~d~~~~~l~s~~~dg~ 475 (1132)
. ..+--+..+|.|+.||.|...||+|+.||.|++|.+.+|.+++. +. +|+..|+|+.|+.|+. .+.+++.|.+
T Consensus 255 Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr---FdrAHtkGvt~l~FSrD~S--qiLS~sfD~t 329 (508)
T KOG0275|consen 255 AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR---FDRAHTKGVTCLSFSRDNS--QILSASFDQT 329 (508)
T ss_pred hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH---hhhhhccCeeEEEEccCcc--hhhcccccce
Confidence 1 12445889999999999999999999999999999999999874 44 8999999999999999 6999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CeEEEEEEcCCC-CE
Q 001176 476 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADG-TR 552 (1132)
Q Consensus 476 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~~-~~ 552 (1132)
+++.-+.+|++++.|+||...|+...|.+ +|..+++++.||+|++|+..+.++...+...+ -+|.++-.-|.+ ..
T Consensus 330 vRiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh 407 (508)
T KOG0275|consen 330 VRIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEH 407 (508)
T ss_pred EEEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCce
Confidence 99999999999999999999999999976 55999999999999999999999988776543 478888877754 56
Q ss_pred EEEEecCCCCCCeEEEEeCCCCceeeeecccc--CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCC
Q 001176 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
+++|.. .+++++.++. |+.+++|.... ++..-+++.+|.|.++++.++|+.++.+.+.+|++..++..|..
T Consensus 408 ~iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk-- 480 (508)
T KOG0275|consen 408 FIVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK-- 480 (508)
T ss_pred EEEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--
Confidence 777753 6779999976 78888886432 33566788999999999999999999999999999999988855
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 631 ASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
.+..++-+|..+.+++-+.||.+++|.
T Consensus 481 dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccCcccchhhhhcccchhhhcC
Confidence 788999999999999999999999994
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-57 Score=484.32 Aligned_cols=579 Identities=18% Similarity=0.260 Sum_probs=479.7
Q ss_pred EEEccCCCeEEEEEcCCCcEEEEecCCCccc-cccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCC
Q 001176 349 MDFHPQQQTILLVGTNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 427 (1132)
Q Consensus 349 ~~~spdg~~lla~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg 427 (1132)
++||++|+ +|++... ..|.+-|+.++... .. .-......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 5777653 46888999988762 21 0234567899999999999999999999
Q ss_pred eEEEEEecCCCceeeeeeeec-ccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccC
Q 001176 428 IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 506 (1132)
Q Consensus 428 ~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~ 506 (1132)
.+++|++.+++.++ .++. |.+||.-++|+|.+. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998776 4565 999999999999997 99999999999999999999999999999999999999998
Q ss_pred CccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC
Q 001176 507 SIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 585 (1132)
Q Consensus 507 ~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 585 (1132)
+...|++|..|+++++||+++... ...+..|.+.|+++++++|+..+++++. |..+.+||+.+.+..+++....
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888899999999999999996554 6788889999999999999999999986 7789999998777777776554
Q ss_pred CceEEEEEeCC-----CCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 586 RSLGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 586 ~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
.+.++.+-++ +.+++++|++|.+++||..+++++......... .+..+...+....++..+.|..+.++|.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~-e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE-EIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch-hhhcceeccccCceEEEEccceEEEEEccc
Confidence 4777777777 679999999999999999999887766544322 366666666566677778899999999988
Q ss_pred cceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccc
Q 001176 661 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 740 (1132)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1132)
. ++.+.+.|....+.. ++.+|. .+....++..
T Consensus 313 l-~i~k~ivG~ndEI~D------------m~~lG~-----------------------------------e~~~laVATN 344 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDEILD------------MKFLGP-----------------------------------EESHLAVATN 344 (775)
T ss_pred c-EEehhhcCCchhhee------------eeecCC-----------------------------------ccceEEEEeC
Confidence 8 888888887776552 222221 1334455566
Q ss_pred cCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccC
Q 001176 741 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 820 (1132)
Q Consensus 741 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~ 820 (1132)
.+.+++|+..+.... -+ .+|...|.++....+|-.|++++.|..+++|.++...
T Consensus 345 s~~lr~y~~~~~~c~------ii--~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~------------------ 398 (775)
T KOG0319|consen 345 SPELRLYTLPTSYCQ------II--PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC------------------ 398 (775)
T ss_pred CCceEEEecCCCceE------EE--eCchhheeeeeecccCcEEEEecCCceEEEEEecCCc------------------
Confidence 699999988764443 22 3599999999988889999999999999999873211
Q ss_pred CCcCcccccCCCCCCCCCCeeEEEEeeCC-CEEEEee-CCeEEEEECCCCeE---------EEEeeCCCCCeEEEEEeCC
Q 001176 821 PSGTLMTNDINESKPTEESAACIALSKND-SYVMSAS-GGKVSLFNMMTFKV---------MTMFMSPPPAATFLAFHPQ 889 (1132)
Q Consensus 821 ~~~~~~~~~~~~~~h~~~~v~~~~~s~dg-~~la~~s-dg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~sp~ 889 (1132)
+.........+ | ...|.+++++..+ .++++++ |.++++|++...+. ..+...|...|+|++++|
T Consensus 399 -~~~~~~a~~~g--H-~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~- 473 (775)
T KOG0319|consen 399 -SKSLCVAQANG--H-TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP- 473 (775)
T ss_pred -chhhhhhhhcc--c-ccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-
Confidence 11111111233 7 8999999998755 4788888 99999999976221 113356999999999999
Q ss_pred CCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCC
Q 001176 890 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 969 (1132)
Q Consensus 890 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 969 (1132)
+..++|+|+.|++.+||+++....+.++.||..+|+|+.|+|..+.++|+|.|++|+||.+++.. +++.+
T Consensus 474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS-----ClkT~----- 543 (775)
T KOG0319|consen 474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS-----CLKTF----- 543 (775)
T ss_pred CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce-----eeeee-----
Confidence 88999999999999999999999999999999999999999999999999999999999999865 33333
Q ss_pred CCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCccee
Q 001176 970 PLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1049 (1132)
Q Consensus 970 ~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~ 1049 (1132)
.||...|..+.|-.+|+.|++++.||-|++|++.+++++
T Consensus 544 -----------------------------------------eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 544 -----------------------------------------EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred -----------------------------------------cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence 345778999999999999999999999999999999999
Q ss_pred cccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1050 CRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
+.+. +|...|.+++-+| ...+++||+.||.|.+|.=.+.+
T Consensus 583 ~tlD-----------~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 583 MTLD-----------AHNDRVWALSVSP-LLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred hhhh-----------hccceeEEEeecC-ccceeEecCCCeEEEEeecCcHH
Confidence 9887 8899999999999 66799999999999999866654
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-53 Score=453.49 Aligned_cols=573 Identities=13% Similarity=0.217 Sum_probs=464.7
Q ss_pred eeecCCCCCCceeccCC------cccce-EEeec--CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCcccccccee
Q 001176 315 VSFAGVAHTPNVYSQDD------LTKTV-VRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFK 385 (1132)
Q Consensus 315 ~~~~~~g~~~~~~~~d~------~~~~~-~~~l~--h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~ 385 (1132)
++++++|+.++....+. .++.. +.... ..+.+++++.+||++ .|++++..+.+++|++.+++.+..
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs---- 99 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS---- 99 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh----
Confidence 89999999998876553 34444 33333 567899999999998 688899999999999999977653
Q ss_pred eeecccccccccccccCC-CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCc
Q 001176 386 VWDISAASMPLQNALLND-AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 464 (1132)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~ 464 (1132)
++. |++||.-++|+|.|.++|+|+.|+.++|||+..+.+.. .|+||.+.|.++.|.|+-..
T Consensus 100 ---------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 100 ---------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred ---------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccch
Confidence 333 99999999999999999999999999999999987665 79999999999999999876
Q ss_pred EEEEEEcCCCcEEEEECCCCeE-EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEE
Q 001176 465 LCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 543 (1132)
Q Consensus 465 ~~l~s~~~dg~v~vwd~~~~~~-~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 543 (1132)
..|++|..|+++++||+.+... +..+..|...|+++++.++ +..+++++.|..+.+||+...+....+.. ...+.+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~ 238 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLES 238 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccC--CceEEEeccCcEEEEeehhhhhhhheech-hhheee
Confidence 6799999999999999996554 7888999999999999876 48999999999999999966555554443 234566
Q ss_pred EEEcCC-----CCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 544 MAYSAD-----GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 544 ~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
+.+-++ |.+++++|. ++.+++||.++++++..........+..+...+....++....|..+.++|.++.+
T Consensus 239 vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred EEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 666666 668888874 78899999999988766554433346666666666777788889999999999999
Q ss_pred eEEEEeCCCCCCCcceEEEc-CCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCc
Q 001176 619 MLTTVDADGGLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 697 (1132)
Q Consensus 619 ~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 697 (1132)
....+-+... .|..+.|- |+.++|+++++.+.+|+|+..+. .+. .+.+|...+.+..
T Consensus 315 i~k~ivG~nd--EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~-~c~-ii~GH~e~vlSL~------------------ 372 (775)
T KOG0319|consen 315 IVKQIVGYND--EILDMKFLGPEESHLAVATNSPELRLYTLPTS-YCQ-IIPGHTEAVLSLD------------------ 372 (775)
T ss_pred EehhhcCCch--hheeeeecCCccceEEEEeCCCceEEEecCCC-ceE-EEeCchhheeeee------------------
Confidence 9988876644 78888875 57899999999999999988776 333 7788877655321
Q ss_pred cccccccCCCCCCCCCCCCcccCccCcCCcccccccccccc-cccCceeeeecCCCCCCCcceEEecCCcccccceEEEE
Q 001176 698 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA-EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 776 (1132)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 776 (1132)
...++-++++ +.|+++++|.++.......+ .-...+|.+.|.+++
T Consensus 373 -------------------------------~~~~g~llat~sKD~svilWr~~~~~~~~~~---~a~~~gH~~svgava 418 (775)
T KOG0319|consen 373 -------------------------------VWSSGDLLATGSKDKSVILWRLNNNCSKSLC---VAQANGHTNSVGAVA 418 (775)
T ss_pred -------------------------------ecccCcEEEEecCCceEEEEEecCCcchhhh---hhhhcccccccceee
Confidence 1223334444 56799999999543322221 112356999999999
Q ss_pred EecCC-ceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEe
Q 001176 777 YTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA 855 (1132)
Q Consensus 777 ~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~ 855 (1132)
++..+ ..+++++.|.++++|++...+.... .-..........| ...|.+++++|+.+++|+|
T Consensus 419 ~~~~~asffvsvS~D~tlK~W~l~~s~~~~~----------------~~~~~~~~t~~aH-dKdIN~Vaia~ndkLiAT~ 481 (775)
T KOG0319|consen 419 GSKLGASFFVSVSQDCTLKLWDLPKSKETAF----------------PIVLTCRYTERAH-DKDINCVAIAPNDKLIATG 481 (775)
T ss_pred ecccCccEEEEecCCceEEEecCCCcccccc----------------cceehhhHHHHhh-cccccceEecCCCceEEec
Confidence 98766 4578899999999999875221111 0000000111237 8999999999999999999
Q ss_pred e-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCC
Q 001176 856 S-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 934 (1132)
Q Consensus 856 s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 934 (1132)
+ |.+.+||+++......++.+|...|.|+.|+| ..+.+|+++.|++|+||.+.+..++++|.||...|..+.|-.+|+
T Consensus 482 SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~ 560 (775)
T KOG0319|consen 482 SQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGK 560 (775)
T ss_pred ccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCc
Confidence 9 99999999999999999999999999999999 889999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC
Q 001176 935 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS 999 (1132)
Q Consensus 935 ~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~ 999 (1132)
.|+|++.||-+++|++++++ |+..+..|. +.|.+++-++.+..+++ +.|+.|.+|.-
T Consensus 561 qliS~~adGliKlWnikt~e-----C~~tlD~H~---DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 561 QLISAGADGLIKLWNIKTNE-----CEMTLDAHN---DRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred EEEeccCCCcEEEEeccchh-----hhhhhhhcc---ceeEEEeecCccceeEecCCCeEEEEeec
Confidence 99999999999999999987 667777887 78999999999998888 68999999974
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-50 Score=416.06 Aligned_cols=571 Identities=14% Similarity=0.196 Sum_probs=441.0
Q ss_pred EEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCC
Q 001176 348 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 427 (1132)
Q Consensus 348 ~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg 427 (1132)
-+.-.|.|..++.+.+ ..|.+-+++...... ++.+|..+++-..|||.|-|+|+|...|
T Consensus 23 ~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG 81 (603)
T KOG0318|consen 23 IIGGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSG 81 (603)
T ss_pred EeccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcC
Confidence 3455677877787764 688888888765432 3778999999999999999999999999
Q ss_pred eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc--CCCcEEEEECCCCeEEEEecCCCCCeEEEEeecc
Q 001176 428 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505 (1132)
Q Consensus 428 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~ 505 (1132)
.|||||....+.+ ...+++.-.++|.+++|+.|+++ |+..+ +++..+++-..+|..+..+.||...|+++.|-|.
T Consensus 82 ~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 82 KVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred cEEEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC
Confidence 9999998874433 22356778899999999999995 44443 3444444444588889999999999999999887
Q ss_pred CCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec---c
Q 001176 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---G 582 (1132)
Q Consensus 506 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~ 582 (1132)
.. -.+++|+.|++|.+|+=..-+-...+..|..-|.++.|+|||.++++++. |+.+++||-.+|+.+..+. +
T Consensus 159 RP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 159 RP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred Cc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCC
Confidence 65 78999999999999965544445566778889999999999999999986 7889999999999999998 6
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCC-CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 583 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL-PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|.+ .|.+++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. ...|++.+.+|+|.+++....
T Consensus 234 HkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 234 HKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred ccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 666 8999999999999999999999999999999999998765431 122344454 668899999999999998776
Q ss_pred ceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccccccc
Q 001176 662 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 741 (1132)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1132)
...+.+.+
T Consensus 311 -~~~~~i~G----------------------------------------------------------------------- 318 (603)
T KOG0318|consen 311 -SVLKVISG----------------------------------------------------------------------- 318 (603)
T ss_pred -Chhheecc-----------------------------------------------------------------------
Confidence 23333333
Q ss_pred CceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCC
Q 001176 742 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPP 821 (1132)
Q Consensus 742 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~ 821 (1132)
|...|+++..++++++|++++.||.|.-|+...
T Consensus 319 --------------------------HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~--------------------- 351 (603)
T KOG0318|consen 319 --------------------------HNKSITALTVSPDGKTIYSGSYDGHINSWDSGS--------------------- 351 (603)
T ss_pred --------------------------cccceeEEEEcCCCCEEEeeccCceEEEEecCC---------------------
Confidence 667799999999999999999999999997643
Q ss_pred CcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEE--eeCCCCCeEEEEEeCCCCCeEEEEeC
Q 001176 822 SGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGME 899 (1132)
Q Consensus 822 ~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~~~~~lasg~~ 899 (1132)
|..-. +.+..| ...|.+++.+..+.++.++-|.++++.++.....-.. ++- .....+++..+ ++.+++.+..
T Consensus 352 -g~~~~--~~g~~h-~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~ 425 (603)
T KOG0318|consen 352 -GTSDR--LAGKGH-TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACI 425 (603)
T ss_pred -ccccc--cccccc-cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEec
Confidence 22221 333447 8999999998878777777799999999865432221 121 22234888888 6667766666
Q ss_pred CCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEE
Q 001176 900 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 979 (1132)
Q Consensus 900 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 979 (1132)
++.+.+=|.. .+..+. -.-...+++++|++..++.|+.|+.|++|.+...+........... .+++.++|
T Consensus 426 ~~iv~l~~~~---~~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~------a~iT~vay 495 (603)
T KOG0318|consen 426 SDIVLLQDQT---KVSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR------AAITDVAY 495 (603)
T ss_pred CcEEEEecCC---cceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc------CCceEEEE
Confidence 6544443332 222222 2334678999999999999999999999999986643332222222 57899999
Q ss_pred CCCCcEEEEEe-CCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccc
Q 001176 980 HNDQTHLLVVH-ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1058 (1132)
Q Consensus 980 s~dg~~l~~~~-d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1058 (1132)
|||+.+|++++ .+.+.+||...+.... ..-..|.+.|.+++|||+.++||+|+.|.+|.||+++.....-.+
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~~~-~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i------ 568 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREVKT-NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII------ 568 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCceec-ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEe------
Confidence 99999999975 7889999994444322 112346999999999999999999999999999999976544222
Q ss_pred cccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1059 PTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1059 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
-.+|...|..+.|. ++..+++++.|..|++|++.
T Consensus 569 ----knAH~~gVn~v~wl--de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 569 ----KNAHLGGVNSVAWL--DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ----ccccccCceeEEEe--cCceEEeccCcceeEEeccc
Confidence 24777779999998 57899999999999999874
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-50 Score=430.15 Aligned_cols=576 Identities=17% Similarity=0.255 Sum_probs=451.2
Q ss_pred eeeecCCCCCCceeccCCc-----ccc--eEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceee
Q 001176 314 EVSFAGVAHTPNVYSQDDL-----TKT--VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKV 386 (1132)
Q Consensus 314 ~~~~~~~g~~~~~~~~d~~-----~~~--~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~ 386 (1132)
.+.|++||..+.....+.. ... ....+.+...|++++.||+|. +|++-...|.+.+-++.....++..
T Consensus 19 nl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f---- 93 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRF---- 93 (893)
T ss_pred cEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEE----
Confidence 3567777766555443331 122 233345889999999999998 6777778899998888877666532
Q ss_pred eecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCc-----eeeeeeeecccCCEEEEEEecC
Q 001176 387 WDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAHVGGVNDIAFAHP 461 (1132)
Q Consensus 387 ~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~-----~~~~~~l~~h~~~v~~v~~s~d 461 (1132)
.-+.+|.|+.|||||+++|+|.. ..+.||....... .....++.+|...|.++.|+.|
T Consensus 94 ----------------~fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~D 156 (893)
T KOG0291|consen 94 ----------------NFKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDD 156 (893)
T ss_pred ----------------eecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccC
Confidence 14568999999999999999854 5699999875432 2233467789999999999999
Q ss_pred CCcEEEEEEcCCCcEEEEECCCCeE--EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC------------
Q 001176 462 NKQLCIVTCGDDKMIKVWDVVAGRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY------------ 527 (1132)
Q Consensus 462 ~~~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~------------ 527 (1132)
.+ +|++|+.|.++++|++...+. .+.+.+|.+.|.+..|..+. ..+++.+.||.+.+|....
T Consensus 157 Sr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~ 232 (893)
T KOG0291|consen 157 SR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANS--LDLYTVSKDGALFVWTCDLRPPELDKAEKDE 232 (893)
T ss_pred Cc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCc--ceEEEEecCceEEEEEecCCCcccccccccc
Confidence 99 899999999999999987665 67788999999998886544 7899999999999997661
Q ss_pred -----------CCc-----------eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC
Q 001176 528 -----------LGS-----------RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 585 (1132)
Q Consensus 528 -----------~~~-----------~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 585 (1132)
++. ..-+......+++.+|++..+.|+++.. .|.+.+|++....+++.+.-...
T Consensus 233 eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~ 308 (893)
T KOG0291|consen 233 EGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ 308 (893)
T ss_pred cccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc
Confidence 111 0112223368899999999999999875 66788999999999998887655
Q ss_pred CceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCccee
Q 001176 586 RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL 664 (1132)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 664 (1132)
.|..++|+..|.+++.|+ .-|.+-||+..+..-+...++| ...+++++++|||+++++|++||.|++||...+ -+
T Consensus 309 -~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC 384 (893)
T KOG0291|consen 309 -KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FC 384 (893)
T ss_pred -eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eE
Confidence 899999999999999977 4589999999987777666655 558999999999999999999999999998766 11
Q ss_pred eeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCce
Q 001176 665 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 744 (1132)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 744 (1132)
+.++
T Consensus 385 ~vTF---------------------------------------------------------------------------- 388 (893)
T KOG0291|consen 385 FVTF---------------------------------------------------------------------------- 388 (893)
T ss_pred EEEe----------------------------------------------------------------------------
Confidence 1111
Q ss_pred eeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcC
Q 001176 745 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 824 (1132)
Q Consensus 745 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 824 (1132)
T Consensus 389 -------------------------------------------------------------------------------- 388 (893)
T KOG0291|consen 389 -------------------------------------------------------------------------------- 388 (893)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCC-CeEEEEEeCCCCCeEEEEeCCC-
Q 001176 825 LMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDS- 901 (1132)
Q Consensus 825 ~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~~lasg~~dg- 901 (1132)
.. | ...|+.+.|+..|+.+++.+ ||+|+.||+..++..+++..+.. ...|++..| .|.++..|+.|.
T Consensus 389 ------te--H-ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F 458 (893)
T KOG0291|consen 389 ------TE--H-TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSF 458 (893)
T ss_pred ------cc--C-CCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceE
Confidence 11 6 88899999999999999999 99999999999999999986553 367899999 899999998885
Q ss_pred cEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECC
Q 001176 902 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 981 (1132)
Q Consensus 902 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 981 (1132)
.|++|++++|+++..+.||.++|.+++|+|++..|+|++.|.+|++||+-....... .+... ..+..++|+|
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vE-tl~i~-------sdvl~vsfrP 530 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVE-TLEIR-------SDVLAVSFRP 530 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceee-eEeec-------cceeEEEEcC
Confidence 699999999999999999999999999999999999999999999999966422111 11111 4688999999
Q ss_pred CCcEEEE-EeCCeEEEEeC-CCCceeecCC------C-----------CCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001176 982 DQTHLLV-VHESQISVYDS-KLECSRSWSP------K-----------DALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042 (1132)
Q Consensus 982 dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~------~-----------~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd 1042 (1132)
||+.+++ .-||.|.+||+ .+.....+.. + .+.....+++++|+||.++++|++.+.|++|+
T Consensus 531 dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 531 DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 9999999 57999999998 3333221111 0 12256899999999999999999999999999
Q ss_pred CCCcceecccCCCcccccc------------------c---------------------------cCCCCCCcEEEEeCC
Q 001176 1043 AETLRFRCRIGPSAYIPTY------------------A---------------------------VSSNTAHPLVIAPHP 1077 (1132)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~------------------~---------------------------~~~~~~~v~~~~~~p 1077 (1132)
+.++..+.+++..+..... . -....+.++.+.|+|
T Consensus 611 v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP 690 (893)
T KOG0291|consen 611 VPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP 690 (893)
T ss_pred CchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECC
Confidence 9999888765543211100 0 001136788999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCC
Q 001176 1078 SEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1078 ~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
.++-+++++..| |.||.+.+
T Consensus 691 -tgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 691 -TGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred -CcCeeeeecccc-eEEEecCC
Confidence 778888888777 45676654
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-49 Score=409.58 Aligned_cols=556 Identities=16% Similarity=0.203 Sum_probs=431.9
Q ss_pred CCCCCCceeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccc
Q 001176 319 GVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQN 398 (1132)
Q Consensus 319 ~~g~~~~~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1132)
++|+.+.+-..+.... +...-+|...++-..|||.|. ++|+|...|.|+|||....+.+...+|+
T Consensus 36 ~nGksv~ir~i~~~~~-~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~------------- 100 (603)
T KOG0318|consen 36 TNGKSVIIRNIDNPAS-VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ------------- 100 (603)
T ss_pred eCCCEEEEEECCCccc-eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-------------
Confidence 3444444444444333 222334889999999999997 7999999999999999876554433333
Q ss_pred cccCCCCcCeEEEEEcCCCCeEEEEeC--CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcE
Q 001176 399 ALLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 399 ~~~~~h~~~V~~v~~spdg~~las~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v 476 (1132)
.-.++|..++|+.|+++|++.+. ++..+++-.++|..+. ++.||...|++++|-|.... +++||++|++|
T Consensus 101 ----v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v 172 (603)
T KOG0318|consen 101 ----VLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTV 172 (603)
T ss_pred ----ecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeE
Confidence 35679999999999999887654 3334444444555454 68899999999999987654 99999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCeEEEEEEcCCCCEE
Q 001176 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSADGTRL 553 (1132)
Q Consensus 477 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l 553 (1132)
.+|+=..-+...+++.|...|.++.|+|+ |.++++++.||+|.+||=.+++.+..+. .|.+.|.+++|+||++.+
T Consensus 173 ~ffeGPPFKFk~s~r~HskFV~~VRysPD--G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~ 250 (603)
T KOG0318|consen 173 AFFEGPPFKFKSSFREHSKFVNCVRYSPD--GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF 250 (603)
T ss_pred EEeeCCCeeeeecccccccceeeEEECCC--CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE
Confidence 99997777777888999999999999885 5999999999999999999999988887 889999999999999999
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeeeccccC--CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 631 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1132)
++++. |.++++||+.+.++++++..... .....+.|. ...|++.+.+|.|.+++......+..+.+|.. .
T Consensus 251 ~T~Sa----Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ 322 (603)
T KOG0318|consen 251 LTVSA----DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--S 322 (603)
T ss_pred EEecC----CceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc--c
Confidence 99986 77799999999999998865432 122234454 56899999999999999999999999988855 8
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCC
Q 001176 632 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 711 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 711 (1132)
|++++.++|+++|++|+.||.|.-|+..++......-+.|...+..
T Consensus 323 ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~---------------------------------- 368 (603)
T KOG0318|consen 323 ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG---------------------------------- 368 (603)
T ss_pred eeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE----------------------------------
Confidence 9999999999999999999999999998883222111344433221
Q ss_pred CCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccc
Q 001176 712 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 791 (1132)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 791 (1132)
......+.++.++.|.++++.++.......... .. -..+..+++..+++..++.++.++
T Consensus 369 ---------------~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~-~~-----lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 369 ---------------MAASESGELFTIGWDDTLRVISLKDNGYTKSEV-VK-----LGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred ---------------EeecCCCcEEEEecCCeEEEEecccCcccccce-ee-----cCCCceeEEEcCCCCEEEEEecCc
Confidence 112234677888999999999886543322211 11 123345888888887666666655
Q ss_pred eeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeE
Q 001176 792 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV 870 (1132)
Q Consensus 792 ~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 870 (1132)
.+.+-+.. .+... .. .....+++++|+++.+|+|+ |++|+||.+....+
T Consensus 428 iv~l~~~~------------------------~~~~~--~~----~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l 477 (603)
T KOG0318|consen 428 IVLLQDQT------------------------KVSSI--PI----GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL 477 (603)
T ss_pred EEEEecCC------------------------cceee--cc----ccccceEEEcCCCCEEEEecccceEEEEEecCCcc
Confidence 44442221 11111 11 55678999999999999999 99999999987654
Q ss_pred --EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee-eccccCCeeEEEEcCCCCEEEEEcCCCcEEE
Q 001176 871 --MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCM 947 (1132)
Q Consensus 871 --~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~l~s~~~D~~i~i 947 (1132)
...+..|.++|++++||| ++.+||+|...+.|.+||+.+.+.... ..-|.++|.|++|+|+..++|||+-|-.|.+
T Consensus 478 ~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Vii 556 (603)
T KOG0318|consen 478 KEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVII 556 (603)
T ss_pred cceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEE
Confidence 334667999999999999 999999999999999999998876433 4459999999999999999999999999999
Q ss_pred EECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCC
Q 001176 948 WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK 1000 (1132)
Q Consensus 948 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~ 1000 (1132)
|+++..... +.....|. ..|+.+.|-.+...+-++.|..|++|+++
T Consensus 557 ysv~kP~~~----i~iknAH~---~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 557 YSVKKPAKH----IIIKNAHL---GGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEccChhhh----eEeccccc---cCceeEEEecCceEEeccCcceeEEeccc
Confidence 999876532 33444454 45999999999888877999999999863
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.8e-49 Score=420.78 Aligned_cols=591 Identities=13% Similarity=0.205 Sum_probs=449.0
Q ss_pred CcceeeecCCCCCCceeccCC-------cccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccc
Q 001176 311 QSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP 383 (1132)
Q Consensus 311 ~v~~~~~~~~g~~~~~~~~d~-------~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~ 383 (1132)
.+.+++.||+|..+.+..... ....+++.+.-+.+|.|+.|||||+ ++|+|. .+.+.||.......-.-..
T Consensus 57 NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~-~fav~~-gn~lqiw~~P~~~~~~~~p 134 (893)
T KOG0291|consen 57 NITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGK-FFAVGC-GNLLQIWHAPGEIKNEFNP 134 (893)
T ss_pred ceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCc-EEEEEe-cceeEEEecCcchhcccCc
Confidence 688999999998776654432 3455677777889999999999999 566654 5799999876433211111
Q ss_pred eeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCC
Q 001176 384 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 463 (1132)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~ 463 (1132)
| .....+.+|-..|.++.||.|.++|++|+.|-++++|+++..+.+. ...+.+|.+.|-+.-|..+..
T Consensus 135 F-----------vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~-~~~l~gHkd~VvacfF~~~~~ 202 (893)
T KOG0291|consen 135 F-----------VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF-TYALNGHKDYVVACFFGANSL 202 (893)
T ss_pred c-----------eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-eEeccCCCcceEEEEeccCcc
Confidence 1 1222367899999999999999999999999999999999877643 346889999999999999988
Q ss_pred cEEEEEEcCCCcEEEEECCC-----------------------CeE-----E------EEecCCCCCeEEEEeeccCCcc
Q 001176 464 QLCIVTCGDDKMIKVWDVVA-----------------------GRK-----Q------YTFEGHEAPVYSVCPHHKESIQ 509 (1132)
Q Consensus 464 ~~~l~s~~~dg~v~vwd~~~-----------------------~~~-----~------~~~~~h~~~v~~i~~~~~~~~~ 509 (1132)
-++|.+.||.+.+|.... ++. . +-+......|++.+|++.. .
T Consensus 203 --~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t--~ 278 (893)
T KOG0291|consen 203 --DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT--N 278 (893)
T ss_pred --eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc--e
Confidence 799999999999997651 111 0 1112234779999998866 7
Q ss_pred EEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceE
Q 001176 510 FIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 589 (1132)
Q Consensus 510 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 589 (1132)
.|++|-..|...+|++.....+..+.....+|..++|+..|.+|+.++. +-|++.+|+..+..-+...++|.. .+.
T Consensus 279 ~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~i~ 354 (893)
T KOG0291|consen 279 LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-RIT 354 (893)
T ss_pred EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-cee
Confidence 9999999999999999999999999888899999999999999999884 578999999999999999999988 899
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecc
Q 001176 590 VVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 590 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
+++++|||+++++|++||+|+|||..++-++.++..|.. .|+.+.|+..|+.+++.+-||+|+.||+... +.++++.
T Consensus 355 ~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts--~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTft 431 (893)
T KOG0291|consen 355 SLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS--GVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTFT 431 (893)
T ss_pred eEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC--ceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeeec
Confidence 999999999999999999999999999999999998754 8999999999999999999999999999776 5455443
Q ss_pred ccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeec
Q 001176 670 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 749 (1132)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~ 749 (1132)
..
T Consensus 432 ~P------------------------------------------------------------------------------ 433 (893)
T KOG0291|consen 432 SP------------------------------------------------------------------------------ 433 (893)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccc-eeEEEeeccccCCCCCccccccccccccCCCcCcccc
Q 001176 750 PDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTN 828 (1132)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 828 (1132)
......+++..|.|..+++|+.|. .|.+| +..+|+++..
T Consensus 434 ------------------~p~QfscvavD~sGelV~AG~~d~F~IfvW----------------------S~qTGqllDi 473 (893)
T KOG0291|consen 434 ------------------EPIQFSCVAVDPSGELVCAGAQDSFEIFVW----------------------SVQTGQLLDI 473 (893)
T ss_pred ------------------CceeeeEEEEcCCCCEEEeeccceEEEEEE----------------------EeecCeeeeh
Confidence 123457899999999888888873 45555 5567776654
Q ss_pred cCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCe-EEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 001176 829 DINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIY 906 (1132)
Q Consensus 829 ~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iw 906 (1132)
+.| | +++|.+++|+|+|..||+++ |.+|++||+-... ...++. +...++.++|+| +|+-||+++-||.|.+|
T Consensus 474 -LsG--H-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqItf~ 547 (893)
T KOG0291|consen 474 -LSG--H-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQITFF 547 (893)
T ss_pred -hcC--C-CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceEEEE
Confidence 566 8 99999999999999999999 9999999986543 344444 778899999999 99999999999999999
Q ss_pred Ecccceeeeeecc--------------------ccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCC
Q 001176 907 NVRVDEVKTKLKG--------------------HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG 966 (1132)
Q Consensus 907 d~~~~~~~~~l~~--------------------h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 966 (1132)
|...+..+..+.+ .....+.+++|+||..+++||..+.|++|++.++-.++...+.....
T Consensus 548 d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~s 627 (893)
T KOG0291|consen 548 DIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRS 627 (893)
T ss_pred EhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccc
Confidence 9987655433321 23458899999999999999999999999999977655433322111
Q ss_pred CCCCCCCceeEEECCCCcEEEEEe-----CCeEEEE--eCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001176 967 RQSPLVGETKVQFHNDQTHLLVVH-----ESQISVY--DSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1039 (1132)
Q Consensus 967 ~~~~~~~v~~~~~s~dg~~l~~~~-----d~~v~vw--d~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~ 1039 (1132)
-.........=.+.+-|..-++-. ++.|-+= -.....+....... .-.|+++.|||.|+-+|+++..| |.
T Consensus 628 Ldg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rp--eIrv~sv~fsPtgraFAaatTEG-l~ 704 (893)
T KOG0291|consen 628 LDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRP--EIRVTSVQFSPTGRAFAAATTEG-LL 704 (893)
T ss_pred hhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCc--eEEEEEEEECCCcCeeeeecccc-eE
Confidence 100001112223344444333310 1111100 00000000000000 22588999999999999999887 78
Q ss_pred EEeCCCcceecccC
Q 001176 1040 VFDAETLRFRCRIG 1053 (1132)
Q Consensus 1040 vwd~~~~~~~~~~~ 1053 (1132)
||.+++.-....+.
T Consensus 705 IYsld~~~~FDPf~ 718 (893)
T KOG0291|consen 705 IYSLDTTILFDPFD 718 (893)
T ss_pred EEecCCceEEcccc
Confidence 88887765544333
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.2e-48 Score=414.25 Aligned_cols=572 Identities=15% Similarity=0.243 Sum_probs=439.9
Q ss_pred cCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEE
Q 001176 353 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY 432 (1132)
Q Consensus 353 pdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iw 432 (1132)
..|++ +++ +.--.|.+||+++|+.... + ........|+|+.-+||.-+||+|..||.|+||
T Consensus 32 ~~Gr~-va~-~a~E~vn~WdlRtge~~~~--l---------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGRA-VAV-SALEQVNIWDLRTGEIEKK--L---------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCcE-EEE-eccccEeEEeeecchhhhh--h---------------hhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 35774 433 3346899999999955432 0 012344689999999999999999999999999
Q ss_pred EecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEE
Q 001176 433 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 512 (1132)
Q Consensus 433 d~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~ 512 (1132)
+..++..+. ++.||...|+++.|+..|. +|+|||.|+.|.+||+-...-+.+++||...|+..-|.... .+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~--~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGD--SFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCC--eEEE
Confidence 999875433 6889999999999999999 89999999999999999988899999999999999886533 8999
Q ss_pred EEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC------------ceeeee
Q 001176 513 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------------AIKRTY 580 (1132)
Q Consensus 513 s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------------~~~~~~ 580 (1132)
+.+.|+.|++||+.+..+..+...|.+.+..+++.+ +.+++++. ++.+.+|++... +...++
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeecccee
Confidence 999999999999999999999999999999999988 67777764 667999998311 011112
Q ss_pred ccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEE--------eCC------------------------CC
Q 001176 581 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV--------DAD------------------------GG 628 (1132)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~------------------------~~ 628 (1132)
.-...+..-.++..++++++++-+.|..+.++.+.+.+.+... +.+ ..
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 1111112333666777888888899999999988754321100 000 00
Q ss_pred CCCcceEEEcCCCC---EEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccC
Q 001176 629 LPASPRLRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 705 (1132)
Q Consensus 629 ~~~v~~~~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 705 (1132)
...+.++.|.|.+. .|+. -.++++..|.+..... .
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~-~---------------------------------------- 357 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGK-T---------------------------------------- 357 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCC-C----------------------------------------
Confidence 12344555554322 1222 3344444444332100 0
Q ss_pred CCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEE
Q 001176 706 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLL 785 (1132)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 785 (1132)
.........+.+. +|...|+++++|.+...++
T Consensus 358 ----------------------------------------------~p~~~~~~~i~~~--GHR~dVRsl~vS~d~~~~~ 389 (888)
T KOG0306|consen 358 ----------------------------------------------SPEADRTSNIEIG--GHRSDVRSLCVSSDSILLA 389 (888)
T ss_pred ----------------------------------------------Cccccccceeeec--cchhheeEEEeecCceeee
Confidence 0001111222333 4899999999999987555
Q ss_pred eecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEE
Q 001176 786 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 864 (1132)
Q Consensus 786 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd 864 (1132)
++ .++.+++|+. .+.+.++... ...+.+..|-|.++++++|. .|.+.+||
T Consensus 390 Sg-a~~SikiWn~----------------------~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 390 SG-AGESIKIWNR----------------------DTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred ec-CCCcEEEEEc----------------------cCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEE
Confidence 44 4567888865 3444443321 44788999999999999999 79999999
Q ss_pred CCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc-----ceeeeeec-------cccCCeeEEEEcCC
Q 001176 865 MMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-----DEVKTKLK-------GHQNRITGLAFSPT 932 (1132)
Q Consensus 865 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-----~~~~~~l~-------~h~~~V~~l~~spd 932 (1132)
+.+...+.+.+.|.+.|.+++.+| ++..+++|+.|.+|++||..- |...+.+. .-.+.|.|+.+|||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd 519 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD 519 (888)
T ss_pred eehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC
Confidence 999999999999999999999999 899999999999999999752 21111111 13467999999999
Q ss_pred CCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CCCceeecCCC
Q 001176 933 LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPK 1010 (1132)
Q Consensus 933 g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~ 1010 (1132)
|++||.+--|.+|++|-+++-+ ..-.+.||. .+|.++.+|||++.+++ +.|+.|++|-+ =|.|.+.+
T Consensus 520 gk~LaVsLLdnTVkVyflDtlK-----FflsLYGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~--- 588 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF--- 588 (888)
T ss_pred CcEEEEEeccCeEEEEEeccee-----eeeeecccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh---
Confidence 9999999999999999999855 566778888 78999999999999999 57999999999 67787776
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCC
Q 001176 1011 DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDG 1090 (1132)
Q Consensus 1011 ~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg 1090 (1132)
.+|.+.|+++.|.|+...+.+++.|+.|+-||.+..+.+..+. +|...+.+++.+| +|.++++++.|.
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-----------~H~~ev~cLav~~-~G~~vvs~shD~ 656 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-----------GHHSEVWCLAVSP-NGSFVVSSSHDK 656 (888)
T ss_pred hcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-----------cchheeeeeEEcC-CCCeEEeccCCc
Confidence 4669999999999999999999999999999999998887775 7889999999999 889999999999
Q ss_pred cEEEEecCC
Q 001176 1091 AVHVVEPSD 1099 (1132)
Q Consensus 1091 ~i~vW~~~~ 1099 (1132)
+|++|....
T Consensus 657 sIRlwE~td 665 (888)
T KOG0306|consen 657 SIRLWERTD 665 (888)
T ss_pred eeEeeeccC
Confidence 999999877
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-48 Score=415.75 Aligned_cols=505 Identities=14% Similarity=0.275 Sum_probs=398.0
Q ss_pred cCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
.....|+|+.-+||.- +||+|..||.|+||+..++....+ +.||+..|+++.|+..|.+|
T Consensus 63 ~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rl 122 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRL 122 (888)
T ss_pred cccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceE
Confidence 3456899999999986 799999999999999998765543 78999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
|+||.|+.|.+||+-...-.. .+.||...|+..-|..+.+ ++++.+.|+.|++||+++..+..+.-.|.+.|+++
T Consensus 123 aSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l 197 (888)
T KOG0306|consen 123 ASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWAL 197 (888)
T ss_pred eecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEE
Confidence 999999999999998765444 6899999999999998777 89999999999999999999999999999999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCce------E-------EecCCCCeEEEEEEcCCCCEEEEEecCC-------
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSR------V-------DYDAPGNWCTMMAYSADGTRLFSCGTSK------- 560 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~------~-------~~~~~~~~v~~~~~s~~~~~l~~~~~~~------- 560 (1132)
++.+ ..+++++.|+.+++|++...... . ......++...++..+++++++.-+.++
T Consensus 198 ~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI 273 (888)
T KOG0306|consen 198 VLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRI 273 (888)
T ss_pred EEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheee
Confidence 9975 68999999999999988211000 0 0000011112222223333332222100
Q ss_pred -------------------------------------------------------------------CCCCeEEEEeCCC
Q 001176 561 -------------------------------------------------------------------EGESHLVEWNESE 573 (1132)
Q Consensus 561 -------------------------------------------------------------------~~~~~i~~wd~~~ 573 (1132)
-.++.+..|.+..
T Consensus 274 ~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~ 353 (888)
T KOG0306|consen 274 RSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLEN 353 (888)
T ss_pred cCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEecc
Confidence 0133455555443
Q ss_pred -Cce--------eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE
Q 001176 574 -GAI--------KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 644 (1132)
Q Consensus 574 -~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1132)
+.. -..+.+|.. .|.+++++.+...+++| ..+.+++|+..+.+++.++... -+.+..|-|.++++
T Consensus 354 s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 354 SGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYI 427 (888)
T ss_pred CCCCCccccccceeeeccchh-heeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc----cEEEEEecCCCceE
Confidence 111 123456666 78889998876555554 4678999999999998888743 56788888988899
Q ss_pred EEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCc
Q 001176 645 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 724 (1132)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1132)
++|...|.+.+||+... .+....+
T Consensus 428 v~G~k~Gel~vfdlaS~-~l~Eti~------------------------------------------------------- 451 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASA-SLVETIR------------------------------------------------------- 451 (888)
T ss_pred EEeccCCceEEEEeehh-hhhhhhh-------------------------------------------------------
Confidence 99999999999988766 3332222
Q ss_pred CCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCC
Q 001176 725 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 804 (1132)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~ 804 (1132)
.|.+.|.+++.+||++.+++++.|.+|++|++......
T Consensus 452 ------------------------------------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~ 489 (888)
T KOG0306|consen 452 ------------------------------------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV 489 (888)
T ss_pred ------------------------------------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc
Confidence 26778899999999999999999999999998642221
Q ss_pred CCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEE
Q 001176 805 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATF 883 (1132)
Q Consensus 805 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 883 (1132)
+..+. ++..+..... +.- ...|.|+.+||||++||++- |.+|+||-+++.+....+-||.-+|.|
T Consensus 490 ~gt~~------k~lsl~~~rt----Lel----~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~s 555 (888)
T KOG0306|consen 490 PGTQK------KVLSLKHTRT----LEL----EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLS 555 (888)
T ss_pred Ccccc------eeeeeccceE----Eec----cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeE
Confidence 10000 0000111111 122 67899999999999999998 999999999999999999999999999
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeC
Q 001176 884 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA 963 (1132)
Q Consensus 884 l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 963 (1132)
+..|| |+++++||+.|.+|+||-++-|.+.+.+-+|++.|.++.|-|+...+.|+|.|+.|+-||-...+ .++.
T Consensus 556 mDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe-----~iq~ 629 (888)
T KOG0306|consen 556 MDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE-----EIQK 629 (888)
T ss_pred EeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-----hhee
Confidence 99999 99999999999999999999999999999999999999999999999999999999999998866 6778
Q ss_pred CCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCC
Q 001176 964 PAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL 1001 (1132)
Q Consensus 964 ~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~ 1001 (1132)
+.+|. ..|.+++.+|+|.++++ ++|.+|++|..+.
T Consensus 630 L~~H~---~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 630 LDGHH---SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eccch---heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 88888 78999999999999999 6899999999744
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-50 Score=398.36 Aligned_cols=367 Identities=20% Similarity=0.302 Sum_probs=304.3
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 77999999999999999999999999999999999977554 7899999999999999999 899999999999999
Q ss_pred CCCCeEE-EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 481 VVAGRKQ-YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 481 ~~~~~~~-~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
..+|+++ ..|.+|...|++++|.|-. ..|..++|++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~s-- 224 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSS-- 224 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceeccc--
Confidence 9998876 5799999999999997742 235667788776
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
+|+.++|||+..+.++..+.+|.. +|+|+.|..+| ++++|+.|++|++|+...|.+...+.+|.+ .|+.++.+.
T Consensus 225 --kDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsT 298 (480)
T KOG0271|consen 225 --KDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALST 298 (480)
T ss_pred --CCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccc
Confidence 377799999999999999999998 99999998654 899999999999999999999999999977 899999886
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCccc
Q 001176 640 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 719 (1132)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1132)
|- .|-+|..|.+=+-....+. ...+.+....
T Consensus 299 dy-~LRtgaf~~t~~~~~~~se-~~~~Al~rY~----------------------------------------------- 329 (480)
T KOG0271|consen 299 DY-VLRTGAFDHTGRKPKSFSE-EQKKALERYE----------------------------------------------- 329 (480)
T ss_pred hh-hhhccccccccccCCChHH-HHHHHHHHHH-----------------------------------------------
Confidence 53 2334444422111111000 0001111000
Q ss_pred CccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeec
Q 001176 720 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 799 (1132)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~ 799 (1132)
.+.-..+..+++++.|.++.+|+-.
T Consensus 330 -------------------------------------------------------~~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 330 -------------------------------------------------------AVLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred -------------------------------------------------------HhhccCcceeEEecCCceEEEeccc
Confidence 0001123568999999999998532
Q ss_pred cccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCC
Q 001176 800 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 878 (1132)
Q Consensus 800 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~ 878 (1132)
.+.+++. .+.+ | ...|..+.||||++++|+++ |..|++||..+|+.+.+|++|-
T Consensus 355 ---------------------~~kkpi~-rmtg--H-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 355 ---------------------KSKKPIT-RMTG--H-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred ---------------------ccccchh-hhhc--h-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 1222222 2444 7 88999999999999999999 9999999999999999999999
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001176 879 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949 (1132)
Q Consensus 879 ~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd 949 (1132)
+.|..++|+. |.++|++|+.|.++++||+.+.++...+.||.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 410 ~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 410 AAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999994
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-49 Score=393.40 Aligned_cols=330 Identities=20% Similarity=0.356 Sum_probs=294.4
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
+...+. |.+.|.|++|||+|+ .|++|+.|.++++||+.+.....+ .++|...|.|++||
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvaws 166 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWS 166 (480)
T ss_pred eccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEEC
Confidence 344455 999999999999999 599999999999999998876654 78999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec-----CCCcEEEEEEcCCCcEEEEECCCCeEEEE
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-----PNKQLCIVTCGDDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~-----d~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 489 (1132)
|||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|||+..+.++..
T Consensus 167 PDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 167 PDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred CCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEE
Confidence 9999999999999999999999987754 6889999999999965 555 799999999999999999999999
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEc-----------CCCC-------
Q 001176 490 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS-----------ADGT------- 551 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~------- 551 (1132)
+.+|..+|+|++|-.. .++++||.|++|++|+...+.....+.+|.++|+.++.+ |.++
T Consensus 243 lsgHT~~VTCvrwGG~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred eccCccceEEEEEcCC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHH
Confidence 9999999999999533 699999999999999999988899999999999999887 2233
Q ss_pred ------------------EEEEEecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 001176 552 ------------------RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 612 (1132)
Q Consensus 552 ------------------~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 612 (1132)
.|++++. |.++.+|+... .+++..+.+|.. .|+.+.|+||+.++++++.|..|++|
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW 394 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLW 394 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeee
Confidence 4888874 78899999764 458888999988 89999999999999999999999999
Q ss_pred ECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccc
Q 001176 613 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINA 692 (1132)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1132)
|.++|+.+.++.+|- ..|+.++|+.|.++|++|+.|.++++|++.+. ++...+.+
T Consensus 395 ~g~tGk~lasfRGHv--~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpG---------------------- 449 (480)
T KOG0271|consen 395 DGRTGKFLASFRGHV--AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPG---------------------- 449 (480)
T ss_pred eCCCcchhhhhhhcc--ceeEEEEeccCccEEEEcCCCceEEEEEeeee-eecccCCC----------------------
Confidence 999999999999874 48999999999999999999999999999876 44333333
Q ss_pred cCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccce
Q 001176 693 LGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKV 772 (1132)
Q Consensus 693 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i 772 (1132)
|.+.|
T Consensus 450 ---------------------------------------------------------------------------h~DEV 454 (480)
T KOG0271|consen 450 ---------------------------------------------------------------------------HADEV 454 (480)
T ss_pred ---------------------------------------------------------------------------CCceE
Confidence 66788
Q ss_pred EEEEEecCCceEEeecccceeEEEe
Q 001176 773 VRLIYTNSGLSLLALASNAVHKLWK 797 (1132)
Q Consensus 773 ~~~~~s~~g~~l~~~~~dg~i~vw~ 797 (1132)
.++.++|||+.+++++.|..+++|.
T Consensus 455 f~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 455 FAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999994
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-43 Score=376.77 Aligned_cols=622 Identities=12% Similarity=0.177 Sum_probs=424.4
Q ss_pred EEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe--C
Q 001176 348 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF--S 425 (1132)
Q Consensus 348 ~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~--~ 425 (1132)
.++-+|... ++|.- ....|.+||.+...+- .++..|..+++|++||++|+|+|+|- .
T Consensus 42 gLa~~p~Sg-l~aYp-AGCvVVlfn~~~~tQ~-------------------hlvnssRk~~t~vAfS~~GryvatGEcG~ 100 (1080)
T KOG1408|consen 42 GLASVPCSG-LCAYP-AGCVVVLFNVDSCTQS-------------------HLVNSSRKPLTCVAFSQNGRYVATGECGR 100 (1080)
T ss_pred ccccccccc-ceeec-cCcEEEEEcccccchh-------------------heecccCcceeEEEEcCCCcEEEecccCC
Confidence 445556544 23321 1357888988765432 34667888999999999999999984 6
Q ss_pred CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC--CCcEEEEECCCCeEEEEecCCCCCeEEEEee
Q 001176 426 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503 (1132)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~ 503 (1132)
...++||++.....+. ++..|+-.|+|++|+|.++ ++++.+. |-.|.+||++.......- .-...|..++|+
T Consensus 101 ~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~fs 174 (1080)
T KOG1408|consen 101 TPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAFS 174 (1080)
T ss_pred Cccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEEc
Confidence 6789999999877555 6889999999999999999 7777664 667888988755433222 245668888885
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCC--------eEEEEEEc----CCCCEEEEEecCCCCCCeEEE
Q 001176 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGN--------WCTMMAYS----ADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 504 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~--------~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
. +|.++++.+ ...|++|.++...... .+.+... ...+++.- .+..+.++. .|.+.-
T Consensus 175 E--dgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvE 245 (1080)
T KOG1408|consen 175 E--DGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVE 245 (1080)
T ss_pred c--CCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceee
Confidence 5 558888765 6789999988765322 1111111 01111110 111122221 222332
Q ss_pred EeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC----------------------
Q 001176 569 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD---------------------- 626 (1132)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------- 626 (1132)
| .+.+++..+........+|++.+ .+++++|+.+|.|++|+..+...+.+++..
T Consensus 246 F--SsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~ 321 (1080)
T KOG1408|consen 246 F--SSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP 321 (1080)
T ss_pred e--chhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence 2 22333333322222245667766 578999999999999998876655444311
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeee--eccccccccccCCCCCCCCCcccccccCCCcccccccc
Q 001176 627 GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR--MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIA 704 (1132)
Q Consensus 627 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 704 (1132)
.......++.|++....|.+...|..+++||+++-.+.-+ .+-.|+.-++.+...+
T Consensus 322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p---------------------- 379 (1080)
T KOG1408|consen 322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP---------------------- 379 (1080)
T ss_pred ccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc----------------------
Confidence 1112335788999899999999999999999987633222 2223333322221110
Q ss_pred CCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceE
Q 001176 705 PTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSL 784 (1132)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 784 (1132)
.-.......-.+.+.++.+..|++|++|++.........++-.+. .....+.+
T Consensus 380 ---------------~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils-----~~l~ki~y------- 432 (1080)
T KOG1408|consen 380 ---------------CNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS-----ANLSKIPY------- 432 (1080)
T ss_pred ---------------ccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch-----hhhhcCcc-------
Confidence 011122233355667888999999999999863332222111000 00111111
Q ss_pred EeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEE
Q 001176 785 LALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLF 863 (1132)
Q Consensus 785 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vw 863 (1132)
.|++..+... ...-++|-..-. ... . ...+.++++||+|++||+|+ .|+++||
T Consensus 433 ----~d~~~q~~~d--------------~~~~~fdka~~s----~~d---~-r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 433 ----EDSTQQIMHD--------------ASAGIFDKALVS----TCD---S-RFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred ----ccCchhhhhh--------------ccCCcccccchh----hcC---c-ccceEEEEECCCcceecccCccCceEEE
Confidence 1111111000 000111111111 111 2 67899999999999999999 7999999
Q ss_pred ECCCCeEEEEeeCCCCCeEEEEEeCC--CCCeEEEEeCCCcEEEEEcccc-eeeeeeccccCCeeEEEEcCCC--CEEEE
Q 001176 864 NMMTFKVMTMFMSPPPAATFLAFHPQ--DNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTL--NALVS 938 (1132)
Q Consensus 864 d~~~~~~~~~~~~~~~~i~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg--~~l~s 938 (1132)
++...+.+..+..|..+|.|+.|+.- ..++||+++.|..|.|||+... .++.++.+|...|+++.|.-.| ..+++
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis 566 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS 566 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence 99999999999999999999999852 3579999999999999999754 6788899999999999998877 78999
Q ss_pred EcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CCCceeecCCCCCCCCC
Q 001176 939 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAP 1016 (1132)
Q Consensus 939 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~ 1016 (1132)
+|.|..|++--.+.... -.+-....+......+..++..|..+++++ +.|+.|++||+ .++..+.+...++|.+.
T Consensus 567 cGADksimFr~~qk~~~---g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 567 CGADKSIMFRVNQKASS---GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGD 643 (1080)
T ss_pred ccCchhhheehhccccC---ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCc
Confidence 99999876543332110 011111111112245778999999999999 78999999999 89999999998999888
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 001176 1017 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1096 (1132)
Q Consensus 1017 i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~ 1096 (1132)
.-.+...|.|-+||+.+.|.++.++|..+|+++.+.. ||+..|+.+.|++ |-+.|++.+.||+|.||.
T Consensus 644 lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-----------GHsE~VTG~kF~n-DCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 644 LIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-----------GHSEAVTGVKFLN-DCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-----------Ccchheeeeeecc-cchhheeecCCceEEEEE
Confidence 8899999999999999999999999999999998875 9999999999999 778999999999999999
Q ss_pred cCC
Q 001176 1097 PSD 1099 (1132)
Q Consensus 1097 ~~~ 1099 (1132)
+.-
T Consensus 712 lp~ 714 (1080)
T KOG1408|consen 712 LPL 714 (1080)
T ss_pred Cch
Confidence 965
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-43 Score=383.10 Aligned_cols=551 Identities=15% Similarity=0.202 Sum_probs=369.8
Q ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHHcCCCcc--------HHHHH--------------------------HH--Hhc
Q 001176 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFFFN--------MKHFE--------------------------DQ--VQA 47 (1132)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~--------------------------~~--i~~ 47 (1132)
.++++++++++||+..||+++.+.|.+|.++... ...+| .+ ...
T Consensus 20 ~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 99 (707)
T KOG0263|consen 20 HTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVEK 99 (707)
T ss_pred chHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhhh
Confidence 4678999999999999999999999999774331 11221 00 111
Q ss_pred ccHHHH------HHHhcCCCcc-------ccccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHH
Q 001176 48 GEWDEV------ERYLCGFTKV-------EDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKE 114 (1132)
Q Consensus 48 g~w~~~------~~~l~~~~~~-------~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~ 114 (1132)
-.|+.. +..-..|+.+ -..++.+ ++|+|+.|.||+|++++.++.|..|+.+.--.++..+.+.+.+
T Consensus 100 ~~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~~-iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~i~~ 178 (707)
T KOG0263|consen 100 ALWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELSP-ILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSESIFQ 178 (707)
T ss_pred ccccccCCChhHhhhhhhcchhhhCcchhhhHHHHH-HHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHHHHH
Confidence 112211 1111112211 2234454 9999999999999999999999999998766666778899999
Q ss_pred HHHhhcccCccchhhhcccCCc----hhHHHHHHHHHHhhcccCcccccccCCCCCcchHHHHHHHHHHHHHHhhCCCCC
Q 001176 115 ITQLLTLDNFRQNEQLSKYGDT----KSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNPR 190 (1132)
Q Consensus 115 l~~l~~~~~~~~~~~~~~~~~~----~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q~~~~~~~~ 190 (1132)
|..+-...++.+++....+... .-+| ..++.|.+++.++.. +-..-+..+|+|++..++......+
T Consensus 179 l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr-~s~~lL~~~l~~~~~---------~~g~~i~~ii~~hldi~v~~~~~~r 248 (707)
T KOG0263|consen 179 LLSLETIKHIKENETARAFRKNKYVIRLSR-DSFDLLLRFLQEDNN---------IGGTIIIKIINQHLDIDVFDGVMAR 248 (707)
T ss_pred HHhhhhHHHHhhhhhHHHHhhCcEEEEecH-HHHHHHHHHhhhhcc---------ccchHHHHHHHHHhCcccccccccc
Confidence 9999888888888877666552 1123 222344444443332 2345788999999988876543322
Q ss_pred CCCCc-------cccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCC----CCCCCCCCCCCcccccccccCCCCCC
Q 001176 191 PNPDI-------KTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPP----IGAHGPVVSPSPGAIAGWMSSNSPSL 259 (1132)
Q Consensus 191 ~~~~~-------~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~h~~~~~~~~~~~~~~~~~~~~~~ 259 (1132)
..... ...+..+.... ..... -+.|.+|....+.. +..-.|-+ ..+-++..
T Consensus 249 ~~~~~~~~~g~~~~~i~g~~~~e-------~~~~~-~~l~~~~~e~~~~~~~~~~~e~~D~~------~~~~~~~~---- 310 (707)
T KOG0263|consen 249 RTTKPTAMVGSEQESIAGEAKRE-------INKQK-VQLGLLLKEEEIEKKLPILLEVEDDP------NEPDNEKL---- 310 (707)
T ss_pred ccccchhhcccccccccccchhh-------cccce-eeecccccchhhhhcccccccCcccc------cccccccc----
Confidence 10000 01111211111 00111 01233333222111 00000000 00000000
Q ss_pred CCCCccCCCCCCC--CCCccc-cccccCCCCCCCC-cccccccchhhHhhhcccCCcceeeecCCCCCCceeccCCcccc
Q 001176 260 PHPSMAAGPPGFV--QPSSAV-GFLKHPRTPTGMT-GMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKT 335 (1132)
Q Consensus 260 ~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~d~~~~~ 335 (1132)
..+. ....+. ...+.. ....+...|+... ........-....++ .....+.+|.-
T Consensus 311 ~~~~---~~~~~~~~k~~d~~~ps~d~iPlPp~~~~d~~~~~~~l~d~~kr------------------~~l~~~~lpSi 369 (707)
T KOG0263|consen 311 KKPK---KKKLLSEEKKRDPNAPSRDRIPLPPLKQVDKLAELEALKDEQKR------------------VKLGRNSLPSI 369 (707)
T ss_pred ccch---hhhhhhhhhccccCCCccccCCCCcccchhHHHHHHHHHHHHHH------------------hhcCCCCCCcE
Confidence 0000 000000 000000 0011111222100 000000000001111 11125668888
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccc---cceee---------eecccccccccccccC
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH---KPFKV---------WDISAASMPLQNALLN 402 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~---~~~~~---------~~~~~~~~~~~~~~~~ 402 (1132)
++.++. ....++|+.||+|++ ++|.|-.|..|++|.+...+.... ..+.- -++.+.........+.
T Consensus 370 c~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 999988 678999999999999 899999999999999985432110 00000 0111112222233478
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
||.++|..+.|+|+.++|++++.|+++|+|.+.+..++. ...||..+|+++.|+|-|- ++||+|.|++.++|...
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQTARLWSTD 523 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCceeeeeecc
Confidence 999999999999999999999999999999999987655 5779999999999999998 89999999999999999
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 562 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1132)
...+++.+.+|-+.|.|+.|+|+. .++++||.|.+||+||+.++..+..+.+|.++|.+++|||+|++|++++.
T Consensus 524 ~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e---- 597 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE---- 597 (707)
T ss_pred cCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc----
Confidence 999999999999999999999976 89999999999999999999999999999999999999999999999974
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1132)
++.|.+||+.+++++..+.+|.+ .|.++.|+.+|..|++||.|+.|++||+..-
T Consensus 598 d~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 88899999999999999999955 9999999999999999999999999998653
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.9e-41 Score=341.59 Aligned_cols=312 Identities=16% Similarity=0.275 Sum_probs=264.0
Q ss_pred cccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCC--ccccccceeeeecccccccccccc-cCCCCcCe
Q 001176 332 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNAL-LNDAAISV 408 (1132)
Q Consensus 332 ~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V 408 (1132)
.+....+.+.|+.+|.+++|+|-..-++++|+.|-+.++|++... .......++ .+++... -......|
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr--------h~~~~~~~s~~~nkdV 238 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR--------HCIREGGKSVPSNKDV 238 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh--------hhhhhhcccCCccCCc
Confidence 344556667799999999999977658999999999999998751 111100000 0000000 01134589
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE
Q 001176 409 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 488 (1132)
Q Consensus 409 ~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~ 488 (1132)
++++|+.+|..||+|+.||.++||+...+. +. ++..|+++|.++.|+.+|. +|++++.|+++.+||..+|....
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999988753 22 5788999999999999999 89999999999999999999999
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
.+.-|+.+-..+.|-.. .-+++.+.|+.|+++.+....+...+.+|.+.|.++.|.|.|.+|++|+. |+++++
T Consensus 313 ~f~~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki 385 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI 385 (524)
T ss_pred eeeeccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence 99999988777887543 67999999999999999999999999999999999999999999999985 889999
Q ss_pred EeCCCCceeeeeccccCCceEEEEEeCCC---------CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 569 WNESEGAIKRTYSGFRKRSLGVVQFDTTR---------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
|+.........+..|.+ .|..+.|+|+| ..+++++.|++|++||+..+.++.++..|.. +|++++|+|
T Consensus 386 Ws~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvafS~ 462 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAFSP 462 (524)
T ss_pred eecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEecC
Confidence 99998999999999988 88999999975 4688899999999999999999999987754 899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 640 EGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
+|+++++|+.||.|.+|+..++ ++++.+
T Consensus 463 ~g~ylAsGs~dg~V~iws~~~~-~l~~s~ 490 (524)
T KOG0273|consen 463 NGRYLASGSLDGCVHIWSTKTG-KLVKSY 490 (524)
T ss_pred CCcEEEecCCCCeeEeccccch-heeEee
Confidence 9999999999999999999888 555544
No 16
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=339.15 Aligned_cols=585 Identities=15% Similarity=0.150 Sum_probs=433.4
Q ss_pred EEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCe
Q 001176 349 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 428 (1132)
Q Consensus 349 ~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~ 428 (1132)
..|..-|..++++.+.+.+..+||.+.-..+.- -..+...|.|++-..+ ++.+|+. ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g-~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASG-NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecC-cE
Confidence 556666666888888999999999987665431 1347788999887544 4444433 34
Q ss_pred EEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEE----EEecCCCCCeEEEEee
Q 001176 429 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQ----YTFEGHEAPVYSVCPH 503 (1132)
Q Consensus 429 i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~----~~~~~h~~~v~~i~~~ 503 (1132)
|.+|.. ++.+.. .+..|...|.-+.- =|. .++++..++.+.||+...+ ..+ .-++...+.|+++. +
T Consensus 97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666653 333333 45667777766643 466 6889999999999998874 221 11222233377774 5
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc
Q 001176 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 583 (1132)
Q Consensus 504 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1132)
|+.--+.++.|+.+|.+.+|++++++.+..+......|+++.-+|-=..++.|.. +|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 5554567899999999999999999999999999999999999999889998875 888999999999999999976
Q ss_pred cCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCeeEEEEe-CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 584 RKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+ .|++++|..||+.++ +|+..|.+-+||++..+.+..+. .| .+.|....|.|....+++++.|+.+++|-..++
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 44 899999999996655 46677999999999988887776 44 347899999999999999999999999976654
Q ss_pred ceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccccccc
Q 001176 662 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 741 (1132)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1132)
.-..+.++.
T Consensus 321 dg~pR~LR~----------------------------------------------------------------------- 329 (910)
T KOG1539|consen 321 DGVPRLLRS----------------------------------------------------------------------- 329 (910)
T ss_pred CCcchheee-----------------------------------------------------------------------
Confidence 111111110
Q ss_pred CceeeeecCCCCCCCcceEEecCCcccccceEEEEEe-cCCceEEeecccceeEEEeeccccCCCCCccccccccccccC
Q 001176 742 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYT-NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 820 (1132)
Q Consensus 742 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~ 820 (1132)
..+|..+..++.|- .+|..+++++.|++++.+++....++..-.. ....
T Consensus 330 -----------------------R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~ 379 (910)
T KOG1539|consen 330 -----------------------RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNK 379 (910)
T ss_pred -----------------------ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccc
Confidence 02366677778877 6788899999999999887765443222111 0011
Q ss_pred CCcCcccccCCCCCCCCCCeeEEEEeeCC----CEEEEee--CCeEEEEECCCCeE-EEEee-----CCCCCeEEEEEeC
Q 001176 821 PSGTLMTNDINESKPTEESAACIALSKND----SYVMSAS--GGKVSLFNMMTFKV-MTMFM-----SPPPAATFLAFHP 888 (1132)
Q Consensus 821 ~~~~~~~~~~~~~~h~~~~v~~~~~s~dg----~~la~~s--dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~sp 888 (1132)
...+.....-..... -.+|..+++.... .-++++. +..++.|++..... ..++. .....+++++.++
T Consensus 380 ~~~kk~~~~~~~~~k-~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 380 KRAKKVNVFSTEKLK-LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred cccccccccchhhhc-CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 111111000000001 3456666665421 1233333 67899999987554 22332 2336799999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcccceeeeee---ccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCC
Q 001176 889 QDNNIIAIGMEDSSVQIYNVRVDEVKTKL---KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 965 (1132)
Q Consensus 889 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l---~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~ 965 (1132)
.|++.+.|...|.|-+|++++|-....+ ..|.++|++++...-++.++|++.+|-+++||..+...+....+
T Consensus 459 -CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l---- 533 (910)
T KOG1539|consen 459 -CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL---- 533 (910)
T ss_pred -cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc----
Confidence 9999999999999999999999888887 58999999999988889999999999999999998653222111
Q ss_pred CCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001176 966 GRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 966 ~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~ 1043 (1132)
+ ..+.++..+.....+++ .+|-.|+++|+ +-+..+.+ .+|+..|++++|||||++|++++.|++|++||+
T Consensus 534 ~-----~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f---~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 534 G-----SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF---WGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred C-----CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh---hccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 1 34677777777777777 68899999999 55555555 567999999999999999999999999999999
Q ss_pred CCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCC-CcEEEEecCC
Q 001176 1044 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEPSD 1099 (1132)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~D-g~i~vW~~~~ 1099 (1132)
.++.++..+.. ....+.+.|+| +|++|+|+..| ..|.+|-=.+
T Consensus 606 pt~~lID~~~v------------d~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 606 PTGTLIDGLLV------------DSPCTSLSFSP-NGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred cCcceeeeEec------------CCcceeeEECC-CCCEEEEEEecCceEEEEEchh
Confidence 99999988743 36778999999 88999999999 7899996443
No 17
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1e-38 Score=339.54 Aligned_cols=599 Identities=12% Similarity=0.123 Sum_probs=383.9
Q ss_pred eeeecCCCCCCceeccCCcccceEEeec-CCCCeeEEEEccCCCeEEEEEc--CCCcEEEEecCCCccccccceeeeecc
Q 001176 314 EVSFAGVAHTPNVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDIS 390 (1132)
Q Consensus 314 ~~~~~~~g~~~~~~~~d~~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~ 390 (1132)
....-|.|-.++++..+.-+. -..+. +...++|++||++|+ ++|+|- ....++||++.....+..
T Consensus 50 gl~aYpAGCvVVlfn~~~~tQ--~hlvnssRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE--------- 117 (1080)
T KOG1408|consen 50 GLCAYPAGCVVVLFNVDSCTQ--SHLVNSSRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE--------- 117 (1080)
T ss_pred cceeeccCcEEEEEcccccch--hheecccCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh---------
Confidence 333444454444444443222 22233 677999999999999 699874 567899999988765553
Q ss_pred cccccccccccCCCCcCeEEEEEcCCCCeEEEEeC--CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEE
Q 001176 391 AASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 468 (1132)
Q Consensus 391 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~ 468 (1132)
+..|+..|+|++|+|.++|+++.+. |-.|.+||++.+..... ..-...|..++|+.||. +++
T Consensus 118 ----------fvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~as----nkiss~Vsav~fsEdgS--Yfv 181 (1080)
T KOG1408|consen 118 ----------FVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGAS----NKISSVVSAVAFSEDGS--YFV 181 (1080)
T ss_pred ----------hhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccc----cccceeEEEEEEccCCc--eee
Confidence 6679999999999999999998765 55788998876543321 12355799999999999 788
Q ss_pred EEcCCCcEEEEECCCCeEEEE---ecCCCCCeEEEEeec-----cCCc----cEEEEEecCCeEEEEEcCCCCceEE-ec
Q 001176 469 TCGDDKMIKVWDVVAGRKQYT---FEGHEAPVYSVCPHH-----KESI----QFIFSTAIDGKIKAWLYDYLGSRVD-YD 535 (1132)
Q Consensus 469 s~~~dg~v~vwd~~~~~~~~~---~~~h~~~v~~i~~~~-----~~~~----~~l~s~s~dg~i~~wd~~~~~~~~~-~~ 535 (1132)
|.+ ...|++|.++.++.... |.+...-.-.+.++. .+.| ..++ -+..|.+.-|. ..+.+-. ..
T Consensus 182 T~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfa-it~qGhLvEFS--sRRLLDKWVq 257 (1080)
T KOG1408|consen 182 TSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFA-ITAQGHLVEFS--SRRLLDKWVQ 257 (1080)
T ss_pred eee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEE-Eecccceeeec--hhhhhhhhhh
Confidence 887 67999999987763211 111111111111100 0000 1111 11223322221 1111100 01
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc--------------------C---CceEEEE
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--------------------K---RSLGVVQ 592 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--------------------~---~~v~~~~ 592 (1132)
.......|++.+ .++++.+.. ++.|++|+..+-..+.++.-.+ . ...-++.
T Consensus 258 cRTTnAnCIcVs--~r~I~cgCa----~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~ 331 (1080)
T KOG1408|consen 258 CRTTNANCICVS--SRLIACGCA----KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQ 331 (1080)
T ss_pred hhccccceeeee--cceEEEeec----cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEE
Confidence 112223455554 467877775 8889999987654433322100 0 0233577
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe-CCCCCCCcceEEEcC------------CCCEEEEEeCCCcEEEEEcC
Q 001176 593 FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-ADGGLPASPRLRFNK------------EGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 593 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~------------~~~~l~~~~~dg~i~iw~~~ 659 (1132)
|++....+.+...|..++|||++.-+.+.... .-.|...|+.+.--| .+ -+++++.|++||+|++.
T Consensus 332 Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~ 410 (1080)
T KOG1408|consen 332 FDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLA 410 (1080)
T ss_pred ecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEeecc
Confidence 99989999999999999999998754332211 001122344433322 23 47899999999999987
Q ss_pred CcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccccc
Q 001176 660 DGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAE 739 (1132)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1132)
.+ .--..+..+.... ..++.....+. ..++
T Consensus 411 ~c-tnn~vyrRNils~------------~l~ki~y~d~~-----------------------------------~q~~-- 440 (1080)
T KOG1408|consen 411 FC-TNNQVYRRNILSA------------NLSKIPYEDST-----------------------------------QQIM-- 440 (1080)
T ss_pred cc-cccceeecccchh------------hhhcCccccCc-----------------------------------hhhh--
Confidence 63 1111111100000 00000000000 0000
Q ss_pred ccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccccccccc
Q 001176 740 DVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 819 (1132)
Q Consensus 740 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~ 819 (1132)
.|...-++|-.. .........+++++++|+|++|++|...|.++||++...+.
T Consensus 441 ~d~~~~~fdka~-----------~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---------------- 493 (1080)
T KOG1408|consen 441 HDASAGIFDKAL-----------VSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY---------------- 493 (1080)
T ss_pred hhccCCcccccc-----------hhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh----------------
Confidence 000011111110 00011346789999999999999999999999998853211
Q ss_pred CCCcCcccccCCCCCCCCCCeeEEEEee---CCCEEEEee-CCeEEEEECCC-CeEEEEeeCCCCCeEEEEEeCCCC--C
Q 001176 820 PPSGTLMTNDINESKPTEESAACIALSK---NDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDN--N 892 (1132)
Q Consensus 820 ~~~~~~~~~~~~~~~h~~~~v~~~~~s~---dg~~la~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~~~--~ 892 (1132)
...+. .| +.+|.|+.||. ..++||+++ |.-|+|||+.. ..++.++.+|...|+++.|.- .| .
T Consensus 494 -------~~~~e--AH-esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~ 562 (1080)
T KOG1408|consen 494 -------TCFME--AH-ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNR 562 (1080)
T ss_pred -------hhhee--cc-cceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCce
Confidence 00112 27 99999999986 457899999 88899999864 567889999999999999987 44 5
Q ss_pred eEEEEeCCCcEEEEEcccceeeeeeccc-----cCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCC
Q 001176 893 IIAIGMEDSSVQIYNVRVDEVKTKLKGH-----QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR 967 (1132)
Q Consensus 893 ~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~ 967 (1132)
.+++++.|+.|.+--.....-...+..| ...++.++..|..+++++++.|..|+||++++++..+ ..+...++
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k--~FKgs~~~ 640 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK--SFKGSRDH 640 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee--eecccccC
Confidence 6778889987765332211111222222 3458899999999999999999999999999988543 23333333
Q ss_pred CCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 968 QSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 968 ~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
. .....+...|.|.|+++ +.|+++.++|. .++++... .+|+..|+.+.|++|.++|++.+.||+|.||.+..
T Consensus 641 e---G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m---~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 641 E---GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM---TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred C---CceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh---cCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 3 56678899999999999 68999999999 99998876 56799999999999999999999999999999875
Q ss_pred cc
Q 001176 1046 LR 1047 (1132)
Q Consensus 1046 ~~ 1047 (1132)
-.
T Consensus 715 ~m 716 (1080)
T KOG1408|consen 715 TM 716 (1080)
T ss_pred hH
Confidence 33
No 18
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-41 Score=339.77 Aligned_cols=282 Identities=18% Similarity=0.271 Sum_probs=264.6
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC--CCe
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--GLM 419 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~~ 419 (1132)
...+|..+.||+|++ .+||||.+|.++||+..+...+.. +.||.+.|.++.|+|. +..
T Consensus 174 d~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~~~ 233 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSDLN 233 (459)
T ss_pred CCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCccc
Confidence 457999999999999 799999999999999999876653 7899999999999996 679
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEE
Q 001176 420 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 499 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 499 (1132)
+|+|+.||++++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+...+||...|.+
T Consensus 234 lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFS 308 (459)
T ss_pred eeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccce
Confidence 9999999999999999876555 6889999999999999999 8999999999999999999999889999999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeee
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
++|.++ |.+++||+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+. |++++|||++..+.+.+
T Consensus 309 iaf~~D--GSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 309 IAFQPD--GSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELYT 382 (459)
T ss_pred eEecCC--CceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeeccccccee
Confidence 999875 499999999999999999999999999999999999999999999999985 88899999999999999
Q ss_pred eccccCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 580 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
+.+|.+ -|+.+.|+| .|.+|++++.|++++||...+..++..+.+|.+ .|.++.+++|+..+++++.|.++++|.
T Consensus 383 ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 383 IPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeecc
Confidence 999988 899999998 678899999999999999999999999998865 899999999999999999999999995
No 19
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.8e-37 Score=329.65 Aligned_cols=637 Identities=14% Similarity=0.187 Sum_probs=422.3
Q ss_pred CceeccCCcccceEEeec-CCCCeeEEEEccCCC--eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccc
Q 001176 324 PNVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 400 (1132)
Q Consensus 324 ~~~~~~d~~~~~~~~~l~-h~~~V~~~~~spdg~--~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1132)
.++...|........++. |..+|+|+.|-|+.+ -.+++|+.|+.|++|.++........ .
T Consensus 34 ~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~-----------------~ 96 (764)
T KOG1063|consen 34 PAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIY-----------------T 96 (764)
T ss_pred ceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEE-----------------e
Confidence 344444554556667777 999999999999876 24889999999999999843322211 1
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecc--cCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH--VGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h--~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
+.+|...+.| ++.......+...|+++.+||.+..+ +.....+.-- ..--.|+++.++.+.++++.|+.+..|.+
T Consensus 97 ~~g~~~~~~c--v~a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~ 173 (764)
T KOG1063|consen 97 IQGHCKECVC--VVARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDL 173 (764)
T ss_pred ecCcceeEEE--EEeeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEE
Confidence 4455555544 44333333334789999999995544 2111122111 22235677778666667888888888988
Q ss_pred EECCCC--eEEEEecCCCCCeEEEEeeccCC-ccEEEEEecCCeEEEEEcCCCC------------------------ce
Q 001176 479 WDVVAG--RKQYTFEGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLG------------------------SR 531 (1132)
Q Consensus 479 wd~~~~--~~~~~~~~h~~~v~~i~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~------------------------~~ 531 (1132)
+.-... +.+..+.||.+.|.+++|...+. .-+|+++|.|..||+|.+.-.. ..
T Consensus 174 ~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i 253 (764)
T KOG1063|consen 174 YSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEI 253 (764)
T ss_pred eccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeE
Confidence 875543 45678999999999999975544 4688999999999999764332 00
Q ss_pred -------EEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC--ceeeeec----cccCCceEEEEEeCCCC
Q 001176 532 -------VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYS----GFRKRSLGVVQFDTTRN 598 (1132)
Q Consensus 532 -------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~----~~~~~~v~~~~~~~~~~ 598 (1132)
..+.+|..+|+++.|+|.+..|++++. |.++.+|...+. --+.... ++.........|+|+++
T Consensus 254 ~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~ 329 (764)
T KOG1063|consen 254 QYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN 329 (764)
T ss_pred EEEEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC
Confidence 023488999999999999988888876 777999987654 2222221 22333578899999999
Q ss_pred EEEEEEcCCeEEEEECC-CCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecccccccccc
Q 001176 599 RFLAAGDEFQIKFWDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 677 (1132)
Q Consensus 599 ~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (1132)
.+++-+..|..++|... ...........++...|..++|+|.|.+|++.+.|.+-|+|-.-..+.....+
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi--------- 400 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI--------- 400 (764)
T ss_pred EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee---------
Confidence 99999999999999832 23333333344556689999999999999999999999988543111111100
Q ss_pred CCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCc
Q 001176 678 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 757 (1132)
Q Consensus 678 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~ 757 (1132)
.+
T Consensus 401 ------------------------------------------------------------------------aR------ 402 (764)
T KOG1063|consen 401 ------------------------------------------------------------------------AR------ 402 (764)
T ss_pred ------------------------------------------------------------------------cc------
Confidence 00
Q ss_pred ceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCC
Q 001176 758 IKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 837 (1132)
Q Consensus 758 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~ 837 (1132)
.+-|...++|+++-+....+++++....+++|+.+..-...... +-.+..+. ...+.. .
T Consensus 403 -------PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~--------i~g~~~~~--~~~~p~----g 461 (764)
T KOG1063|consen 403 -------PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMA--------ICGKCFKG--SDELPD----G 461 (764)
T ss_pred -------cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHH--------HhCccccC--chhccc----c
Confidence 01267778889988876778888888999999765310000000 00000000 000000 1
Q ss_pred CCeeEEEEeeCCCEE-EEeeCCe--E-----------EEEECC---------CCeEEEEeeCCCCCeEEEEEeCCCCCeE
Q 001176 838 ESAACIALSKNDSYV-MSASGGK--V-----------SLFNMM---------TFKVMTMFMSPPPAATFLAFHPQDNNII 894 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~l-a~~sdg~--i-----------~vwd~~---------~~~~~~~~~~~~~~i~~l~~sp~~~~~l 894 (1132)
..|..+-+|.+.-+. .+-+.+. + .+.... ....+..+-||.-+|++++.+| +++++
T Consensus 462 A~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnli 540 (764)
T KOG1063|consen 462 ANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLI 540 (764)
T ss_pred cccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEE
Confidence 222222222221111 0100000 0 000000 0122345678999999999999 99999
Q ss_pred EEEeCCC-----cEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCC
Q 001176 895 AIGMEDS-----SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 969 (1132)
Q Consensus 895 asg~~dg-----~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 969 (1132)
|+++... .|++|+..+......+.+|+-.|+.|+|||||++|++++.|.++.+|........... ......|.
T Consensus 541 ASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~Ht- 618 (764)
T KOG1063|consen 541 ASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHT- 618 (764)
T ss_pred eehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-hccccccc-
Confidence 9987553 5999999998888899999999999999999999999999999999998664432221 22233444
Q ss_pred CCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CC--CceeecCCCCCCCCCeEEEEEcc-----CCCEEEEEecCCcEEE
Q 001176 970 PLVGETKVQFHNDQTHLLV-VHESQISVYDS-KL--ECSRSWSPKDALPAPISSAIYSC-----DGLLVYAGFCDGAIGV 1040 (1132)
Q Consensus 970 ~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~--~~~~~~~~~~~h~~~i~~i~~s~-----dg~~las~~~dg~i~v 1040 (1132)
.-|.++.|+|+++++++ +.|+.|.||.. +. +++..+. ...++..|+++++.| .+.++++|-+.|.|.+
T Consensus 619 --RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a-~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l 695 (764)
T KOG1063|consen 619 --RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA-CLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVL 695 (764)
T ss_pred --eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc-hhccCCceeeEEeeccccccccceEEEEecccEEEE
Confidence 56788899999999999 68999999999 44 4554432 234588999999986 2347899999999999
Q ss_pred EeCCCcceecccCC-CccccccccCCCCCCcEEEEeCCCC---------CCeEEEEeCCCcEEEEecC
Q 001176 1041 FDAETLRFRCRIGP-SAYIPTYAVSSNTAHPLVIAPHPSE---------PNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1041 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~---------~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
|....-........ .......-..+|...|..+.|.|.. ...|++|+.|..++++++.
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 696 WRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred EecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 99652111111100 0001112235777889999999842 2356999999999999875
No 20
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-40 Score=333.91 Aligned_cols=285 Identities=20% Similarity=0.321 Sum_probs=262.1
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
+.+.+|..+.||+|++.||||+.+|.+++|+..+...+. +|.+|...|.++.|+|......++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 467799999999999999999999999999999875444 79999999999999998422379999999999999999
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 562 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1132)
+..++..+.+|...|..++|+|++ ++|+|++.|.+-++||+++........+|...|.+++|.+||..+++||.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSG--KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCC--ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 999999999999999999999866 99999999999999999999999999999999999999999999999986
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC-CC
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 641 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~ 641 (1132)
|..-++||+++|+++..+.+|.. .|..++|+|+|..+++||.|++++|||++....+.++..|.. -|+.+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 67789999999999999999888 899999999999999999999999999999999999988865 799999999 88
Q ss_pred CEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCc
Q 001176 642 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 721 (1132)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1132)
.+|++++.|+++++|...+. .+++.+.+
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksLaG--------------------------------------------------- 428 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSLAG--------------------------------------------------- 428 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhhcC---------------------------------------------------
Confidence 99999999999999998777 55555544
Q ss_pred cCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEe
Q 001176 722 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 797 (1132)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~ 797 (1132)
|.+.|.++.+++|+..+++++.|.++++|.
T Consensus 429 ----------------------------------------------He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 429 ----------------------------------------------HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----------------------------------------------CccceEEEEeccCCceEEEeccCceeeecc
Confidence 667889999999999999999999999994
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-37 Score=326.11 Aligned_cols=589 Identities=15% Similarity=0.224 Sum_probs=399.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+.+.|.|+.|+|...+ +.++-..|.|.|||.++...+.. | .-..-+|.+..|-+--++++
T Consensus 12 rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks--f-----------------eV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS--F-----------------EVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee--e-----------------eecccchhhheeeeccceEE
Confidence 7889999999999995 55667789999999999876653 2 22556899999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEecCCCCCeEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~i 500 (1132)
+|+.|..|+||+.++++.++ .+.+|.+.|+|++.+|... +++|+|.|-+|++||.+.+ .+.++|.||+.-|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998776 6899999999999999998 8999999999999999865 6778999999999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCC--CEEEEEecCCCCCCeEEEEeCCCCceee
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--TRLFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
+|+|... +.+++++.|++|++|.+....+..++.+|...|+|+.+-+-| .+|++++. |..+++||.++..+++
T Consensus 147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 9999754 899999999999999999999999999999999999998755 68999874 8889999999999999
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
++.||.. .|..++|+|.-..+++|++||+++||+..+-+...++.... ..++|++-.+.+..+++|.++|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 89999999999999999999999999999988888776553 48999999998888999998888765 22
Q ss_pred CCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccc
Q 001176 659 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 738 (1132)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1132)
..+...+. + ...
T Consensus 298 greeP~vs-M-------------------------------------------------------------d~~------ 309 (794)
T KOG0276|consen 298 GREEPAVS-M-------------------------------------------------------------DSN------ 309 (794)
T ss_pred cCCCCcee-e-------------------------------------------------------------cCC------
Confidence 22200000 0 000
Q ss_pred cccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccc
Q 001176 739 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLW 818 (1132)
Q Consensus 739 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~ 818 (1132)
| -.+|.... .|..+-. -+.+.++
T Consensus 310 ---g-KIiwa~~~-------------------ei~~~~~-------ks~~~~~--------------------------- 332 (794)
T KOG0276|consen 310 ---G-KIIWAVHS-------------------EIQAVNL-------KSVGAQK--------------------------- 332 (794)
T ss_pred ---c-cEEEEcCc-------------------eeeeeec-------eeccCcc---------------------------
Confidence 0 11222111 0111100 0000000
Q ss_pred cCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEe
Q 001176 819 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM 898 (1132)
Q Consensus 819 ~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~ 898 (1132)
++..|+.+....+..+.-.-....++.||+|+++++++||.-+||..-..+ ..+-+.-....|++ +.+..|+-.
T Consensus 333 ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRe 406 (794)
T KOG0276|consen 333 EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRE 406 (794)
T ss_pred cccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEe
Confidence 111111111111110000112245778999999999999999998854322 22445667788999 777888888
Q ss_pred CCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEE
Q 001176 899 EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ 978 (1132)
Q Consensus 899 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 978 (1132)
.++.|.++ ++.+....+...-. +..+ -.|.+|...+ ++.+++||.++++.+. ... .....+.
T Consensus 407 s~~~vki~--knfke~ksi~~~~~---~e~i-~gg~Llg~~s-s~~~~fydW~~~~lVr-----rI~------v~~k~v~ 468 (794)
T KOG0276|consen 407 SNGNVKIF--KNFKEHKSIRPDMS---AEGI-FGGPLLGVRS-SDFLCFYDWESGELVR-----RIE------VTSKHVY 468 (794)
T ss_pred cCCceEEE--ecceeccccccccc---eeee-cCCceEEEEe-CCeEEEEEcccceEEE-----EEe------eccceeE
Confidence 89999999 66776666543211 1111 2355555554 5569999999987433 222 1235789
Q ss_pred ECCCCcEEEEEeCCeEEEEeCCCCceeecCC-CCCC-CCCeEEEEE---ccCCCEEEEEecCCcEEEEeCCCcceecccC
Q 001176 979 FHNDQTHLLVVHESQISVYDSKLECSRSWSP-KDAL-PAPISSAIY---SCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1053 (1132)
Q Consensus 979 ~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~-~~~h-~~~i~~i~~---s~dg~~las~~~dg~i~vwd~~~~~~~~~~~ 1053 (1132)
|+.+|.+++++.|.+..++..+...+..... +... ...|.. +| ......+-+|..-|...||...+.+.-..+.
T Consensus 469 w~d~g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~eeGied-AfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~vg 547 (794)
T KOG0276|consen 469 WSDNGELVAIAGDDSFYILKFNADAVANAVEQGIEVTEEGIED-AFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLVG 547 (794)
T ss_pred EecCCCEEEEEecCceeEEEecHHHHHHHHhcCCCCcchhHHH-HHHHHhhhhhheeeceeeeeEEEEeecccceeEEcC
Confidence 9999999999888776666553222211110 0000 000000 00 0112234444444444555444444433332
Q ss_pred CCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc---ccccCCCC--CCCCCCCCCC
Q 001176 1054 PSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE---LKWGGTPS--QDNGPLPSNS 1119 (1132)
Q Consensus 1054 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~---~~~~~~~~--~~~~~~~~~~ 1119 (1132)
...+. .-........+.+-| .++.+.-+..+-.|.-+.+...- ++..+.+. ...|.+|.+|
T Consensus 548 Ge~~~----v~h~~~~mylLgy~~-~~~rvYL~Dke~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~ 613 (794)
T KOG0276|consen 548 GETYT----VAHLDRIMYLLGYVA-NDNRVYLHDKELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIP 613 (794)
T ss_pred CceEE----EEEeccchhheeeee-cCCEEEEeecccceEeEeeehHHHHHHHHhhhccccccccccccCc
Confidence 22111 012223344566777 44566666666677666665433 22222333 2455555554
No 22
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.7e-38 Score=302.54 Aligned_cols=291 Identities=17% Similarity=0.279 Sum_probs=264.1
Q ss_pred EEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 337 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 337 ~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
.++|+ |...|.++.|++|.+ .++++|.||.+.|||.-+....+. +.-....|..+||+|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sP 107 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSP 107 (343)
T ss_pred EEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECC
Confidence 47888 999999999999999 599999999999999988776542 333677999999999
Q ss_pred CCCeEEEEeCCCeEEEEEecCCC---ceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTG---ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 492 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~---~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 492 (1132)
.|+++|+|+-|....||++.+.. ......++.+|++.+.|+.|.+|+. |+|++.|.+..+||+++|+.+..|.+
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecC
Confidence 99999999999999999998642 2344457899999999999999775 89999999999999999999999999
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
|.+.|.++.+.|. +++.+++|+-|+..++||++.+.+...+.+|...|++++|.|+|.-+++|+. |++.++||++
T Consensus 185 H~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlR 259 (343)
T KOG0286|consen 185 HTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLR 259 (343)
T ss_pred CcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeec
Confidence 9999999999886 5689999999999999999999999999999999999999999999999975 8889999999
Q ss_pred CCceeeeecccc-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCC
Q 001176 573 EGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 651 (1132)
Q Consensus 573 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1132)
..+.+..+.... ...|++++|+..|++|++|..|..+.+||.-.++.+..+.+|.. .|.++..+|||.-+++|+-|.
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhH
Confidence 999888887442 23699999999999999999999999999999999999998865 899999999999999999999
Q ss_pred cEEEEE
Q 001176 652 GIKILA 657 (1132)
Q Consensus 652 ~i~iw~ 657 (1132)
+++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-38 Score=300.14 Aligned_cols=297 Identities=22% Similarity=0.308 Sum_probs=253.9
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
+..+++ |++.|+.++..+.+..++.+++.|.++.+|++.......-. ....+.||+..|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEc
Confidence 455677 99999999999998889999999999999999865332211 111378999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCC-
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH- 493 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h- 493 (1132)
+||++.++++.|+++++||+.+++..+ .|.+|...|.+++|++|++ .++||+.|++|++|++.. .+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g-~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG-VCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc-cEEEEEecCC
Confidence 999999999999999999999986544 6889999999999999999 799999999999999654 445555443
Q ss_pred -CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 494 -EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 494 -~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
.+.|.+++|+|+.+..+|++++.|++|++||+++-+....+.+|.+.++.+++||||...++++. ++.+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEcc
Confidence 78999999999987799999999999999999999999999999999999999999999999874 8889999999
Q ss_pred CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC-------CCCcceEEEcCCCCEEE
Q 001176 573 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-------LPASPRLRFNKEGSLLA 645 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~ 645 (1132)
.++.+..+.... .|.+++|+|+.-.|+ +..+..|+|||+.++..+..+..... .....+++|++||..|+
T Consensus 223 ~~k~lysl~a~~--~v~sl~fspnrywL~-~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf 299 (315)
T KOG0279|consen 223 EGKNLYSLEAFD--IVNSLCFSPNRYWLC-AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLF 299 (315)
T ss_pred CCceeEeccCCC--eEeeEEecCCceeEe-eccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEE
Confidence 999988887544 799999999865544 44566799999999998877754321 22345789999999999
Q ss_pred EEeCCCcEEEEEcC
Q 001176 646 VTTSDNGIKILANS 659 (1132)
Q Consensus 646 ~~~~dg~i~iw~~~ 659 (1132)
+|..|+.|++|.+.
T Consensus 300 ~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 300 AGYTDNVIRVWQVA 313 (315)
T ss_pred eeecCCcEEEEEee
Confidence 99999999999864
No 24
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=9.9e-36 Score=324.39 Aligned_cols=553 Identities=14% Similarity=0.211 Sum_probs=407.8
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+.+.|+|++=..+-- ++|.| +.|.+|-- |+.+. ..+.+|...|.-+. +=|.+++
T Consensus 75 lp~~I~alas~~~~v-y~A~g---~~i~~~~r--gk~i~------------------~~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDYV-YVASG---NKIYAYAR--GKHIR------------------HTTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCceE-EEecC---cEEEEEEc--cceEE------------------EEeccccceEEEEe--eecceEE
Confidence 778999998777643 23332 56666643 22211 12445776676554 3588999
Q ss_pred EEeCCCeEEEEEecCC-Cceeeeee-eecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEE
Q 001176 422 VAFSKHIVHLYTYNPT-GELRQHLE-IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 499 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~-~~~~~~~~-l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 499 (1132)
++..++.+.||+..+. .......+ ++...+.|+++. +|..--..++.|+.+|.+.+|++++++.+++++++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999884 22111112 222222377664 45432225889999999999999999999999999999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeee
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
+.-+|.- +.++.|..+|+|.+++++..+.+..+....++|++++|..||+.+++.+. ..|.+.+||++..+.+..
T Consensus 208 ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 208 IEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLINV 282 (910)
T ss_pred eccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeeee
Confidence 9877765 79999999999999999999999999877899999999999998777653 367799999999888887
Q ss_pred eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe----eEEEEeCCCCCCCcceEEEc-CCCCEEEEEeCCCcEE
Q 001176 580 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFN-KEGSLLAVTTSDNGIK 654 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~ 654 (1132)
....+.+.+....|-|....+++++.|+.+++|=.+++. .+..-.+| ..+..++.|. .+|..+.+++.|++++
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GH--s~Pp~~irfy~~~g~~ilsa~~Drt~r 360 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGH--SAPPSCIRFYGSQGHFILSAKQDRTLR 360 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCC--CCCchheeeeccCcEEEEecccCcchh
Confidence 775444488889999999999999999999988665432 33333444 4578899998 5899999999999999
Q ss_pred EEEcCCcceeeeecc-ccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccc
Q 001176 655 ILANSDGVRLLRMLE-GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 733 (1132)
Q Consensus 655 iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1132)
.+++.... .-+.+. .|....
T Consensus 361 ~fs~~~e~-~~~~l~~~~~~~~---------------------------------------------------------- 381 (910)
T KOG1539|consen 361 SFSVISES-QSQELGQLHNKKR---------------------------------------------------------- 381 (910)
T ss_pred hhhhhHHH-HhHhhcccccccc----------------------------------------------------------
Confidence 98875431 111110 010000
Q ss_pred ccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCC----ceEEee-cccceeEEEeeccccCCCCCc
Q 001176 734 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG----LSLLAL-ASNAVHKLWKWQRTERNPSGK 808 (1132)
Q Consensus 734 ~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g----~~l~~~-~~dg~i~vw~~~~~~~~~~~~ 808 (1132)
.+.+.+.... .+ .-..|..+++.... ..++++ -.+...+.|++....
T Consensus 382 -------~kk~~~~~~~---------~~------k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~------ 433 (910)
T KOG1539|consen 382 -------AKKVNVFSTE---------KL------KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT------ 433 (910)
T ss_pred -------cccccccchh---------hh------cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc------
Confidence 0000000000 00 11223444443321 113333 334667777764211
Q ss_pred cccccccccccCCCcCcc--cccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEe---eCCCCCeE
Q 001176 809 ATANVAPQLWQPPSGTLM--TNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF---MSPPPAAT 882 (1132)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~--~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~---~~~~~~i~ 882 (1132)
.|.-. ...++. . ...+++++.++.|++.+.|+ .|.|.+|++++|-....+ ..|.++|+
T Consensus 434 -------------~G~~~L~~~~~~~--~-~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~ 497 (910)
T KOG1539|consen 434 -------------SGRHVLDPKRFKK--D-DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT 497 (910)
T ss_pred -------------cccEEecCccccc--c-CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee
Confidence 11100 000111 1 56799999999999999998 899999999999988888 57999999
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeee
Q 001176 883 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQ 962 (1132)
Q Consensus 883 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~ 962 (1132)
.++... -++.+++++.+|.+..||..+..++..++ -...++++..+.....+|.+..|-.|+++|+.+.+ ..+
T Consensus 498 gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-----vvR 570 (910)
T KOG1539|consen 498 GLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-----VVR 570 (910)
T ss_pred EEEecC-CCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-----hhH
Confidence 999988 78899999999999999999888777776 44568889998888899999999999999999865 566
Q ss_pred CCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecC-CcEE
Q 001176 963 APAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-GAIG 1039 (1132)
Q Consensus 963 ~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d-g~i~ 1039 (1132)
.+.||. ..+++++|||||+||++ +.|++|++||+ ++.++..+.. ..+++++.|||+|.+|||...| .-|+
T Consensus 571 ~f~gh~---nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v----d~~~~sls~SPngD~LAT~Hvd~~gIy 643 (910)
T KOG1539|consen 571 EFWGHG---NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV----DSPCTSLSFSPNGDFLATVHVDQNGIY 643 (910)
T ss_pred Hhhccc---cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec----CCcceeeEECCCCCEEEEEEecCceEE
Confidence 777887 78999999999999999 67999999999 8887776654 6899999999999999999998 6799
Q ss_pred EEeCCC
Q 001176 1040 VFDAET 1045 (1132)
Q Consensus 1040 vwd~~~ 1045 (1132)
+|.=.+
T Consensus 644 lWsNks 649 (910)
T KOG1539|consen 644 LWSNKS 649 (910)
T ss_pred EEEchh
Confidence 996543
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=291.36 Aligned_cols=248 Identities=16% Similarity=0.223 Sum_probs=228.8
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
++||.+.|.++.|++|+++|++++.||.+.|||.-+..... .+.-....|..++|+|.|+ +++.|+-|+...||+
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIYP 125 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEEe
Confidence 78999999999999999999999999999999998876555 3444577999999999999 899999999999999
Q ss_pred CCCC------eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcC-CCCEE
Q 001176 481 VVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA-DGTRL 553 (1132)
Q Consensus 481 ~~~~------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 553 (1132)
+.+. +..+.+.+|.+.+.++.|..+ ..|+|+|.|.+..+||++++.....+.+|.+.|.++.++| +++.+
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 9855 345678999999999999763 6899999999999999999999999999999999999999 99999
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 633 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1132)
++++- |...++||++.+.++++|.+|.. .|+++.|.|+|.-|++|++|++.++||++..+.+..+........|+
T Consensus 203 vSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 203 VSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT 277 (343)
T ss_pred Eeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence 99986 77799999999999999999998 89999999999999999999999999999999999998777777899
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 634 RLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+++|+..|++|++|..|.++.+||.-.+
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeecccc
Confidence 9999999999999999999999997655
No 26
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.2e-35 Score=315.24 Aligned_cols=585 Identities=15% Similarity=0.194 Sum_probs=400.5
Q ss_pred EEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCC---eEEEEeC
Q 001176 349 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL---MLGVAFS 425 (1132)
Q Consensus 349 ~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~---~las~~~ 425 (1132)
..|.|.+ ++|.|. ...|.+||........ .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3455655 456554 5899999987653222 2789999999999999888 8999999
Q ss_pred CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe--EEEEecCCCCCe--EEEE
Q 001176 426 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPV--YSVC 501 (1132)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~h~~~v--~~i~ 501 (1132)
|+.|++|.++. +.+.....+.+|...+ +++..... .......|+++.+||.+..+ +...++-....+ .+++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~--~cv~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKEC--VCVVARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeE--EEEEeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999994 4455666787776555 44543333 22223789999999985555 222332222222 3444
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCeEEEEEEcCCCC---EEEEEecCCCCCCeEEEEeCCCCc-
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADGT---RLFSCGTSKEGESHLVEWNESEGA- 575 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~- 575 (1132)
+.++.+.-+++.|+.+..|.++.-... .....+.+|..+|.+++|...+. +|++++ .|..|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 555444456677788888888865533 34557899999999999987654 455554 48889999874322
Q ss_pred --------------------eee----------eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC--eeEEEE
Q 001176 576 --------------------IKR----------TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTV 623 (1132)
Q Consensus 576 --------------------~~~----------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~ 623 (1132)
... .+.||.+ .|.++.|+|.+..|++++.|.++.+|...+. --+...
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 111 1247877 9999999999999999999999999987754 333222
Q ss_pred eC---CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCcccc
Q 001176 624 DA---DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 700 (1132)
Q Consensus 624 ~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 700 (1132)
.. .+........-|+|+++.+++-+..|..++|...+. ..
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~--~~----------------------------------- 350 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK--TF----------------------------------- 350 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc--cc-----------------------------------
Confidence 21 122235788999999999999999999999983222 00
Q ss_pred ccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecC
Q 001176 701 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 780 (1132)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 780 (1132)
|... .-..+|...|+.+++.|.
T Consensus 351 ----------------------------------------------w~~~------------~~iSGH~~~V~dv~W~ps 372 (764)
T KOG1063|consen 351 ----------------------------------------------WTQE------------PVISGHVDGVKDVDWDPS 372 (764)
T ss_pred ----------------------------------------------eeec------------cccccccccceeeeecCC
Confidence 0000 000347788999999999
Q ss_pred CceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeC-Ce
Q 001176 781 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG-GK 859 (1132)
Q Consensus 781 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sd-g~ 859 (1132)
|.+|++.+.|.+-++|---. +... | ..+. ...-| ...++|++|-+....+++|.| ..
T Consensus 373 GeflLsvs~DQTTRlFa~wg-------~q~~------w-----HEia---RPQiH-GyDl~c~~~vn~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 373 GEFLLSVSLDQTTRLFARWG-------RQQE------W-----HEIA---RPQIH-GYDLTCLSFVNEDLQFVSGADEKV 430 (764)
T ss_pred CCEEEEeccccceeeecccc-------cccc------e-----eeec---ccccc-cccceeeehccCCceeeeccccee
Confidence 99999999999999884321 1000 1 1111 11226 788999999886666777775 66
Q ss_pred EEEEECCCCe--EEE-----EeeC-----CCCCeEEEEEeCCCCCeEEEEeCCCcE---EEEEc-----------cc---
Q 001176 860 VSLFNMMTFK--VMT-----MFMS-----PPPAATFLAFHPQDNNIIAIGMEDSSV---QIYNV-----------RV--- 910 (1132)
Q Consensus 860 i~vwd~~~~~--~~~-----~~~~-----~~~~i~~l~~sp~~~~~lasg~~dg~v---~iwd~-----------~~--- 910 (1132)
+|+|+....- .+. .+.+ ....|..+-.|. ..-+. --..+|.. ..=.. .+
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn-Ka~~~-~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq 508 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN-KAFFP-GETNTGGEAAVCAETPLAAAPCELTEPPTEDQ 508 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC-CCCcc-cccccccccceeeecccccCchhccCCChHHH
Confidence 8999975320 000 1111 112234444443 11110 01111111 11000 00
Q ss_pred ------ceeeeeeccccCCeeEEEEcCCCCEEEEEcCC-----CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEE
Q 001176 911 ------DEVKTKLKGHQNRITGLAFSPTLNALVSSGAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 979 (1132)
Q Consensus 911 ------~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 979 (1132)
...+.++-||...|++++.+|+|+++||++.. ..|++|+..+... .+.+.+|. ..|+.++|
T Consensus 509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~Hs---LTVT~l~F 580 (764)
T KOG1063|consen 509 LQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHS---LTVTRLAF 580 (764)
T ss_pred HHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hheecccc---eEEEEEEE
Confidence 12344678999999999999999999999854 4599999998763 44566776 78999999
Q ss_pred CCCCcEEEE-EeCCeEEEEeC--CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCc--ceecccCC
Q 001176 980 HNDQTHLLV-VHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL--RFRCRIGP 1054 (1132)
Q Consensus 980 s~dg~~l~~-~~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~--~~~~~~~~ 1054 (1132)
||||++|++ +.|+++.+|.. +......+.....|+.-|.++.|+||+.++||+|.|.+|+||....+ +.+.++
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~-- 658 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF-- 658 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh--
Confidence 999999999 89999999998 22222334456788999999999999999999999999999999988 444433
Q ss_pred CccccccccCCCCCCcEEEEeCCCCCC----eEEEEeCCCcEEEEecCCCc
Q 001176 1055 SAYIPTYAVSSNTAHPLVIAPHPSEPN----QIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1055 ~~~~~~~~~~~~~~~v~~~~~~p~~~~----~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
....++..|++++|.|-+.+ .++.|-..|.|.+|+....+
T Consensus 659 -------a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~ 702 (764)
T KOG1063|consen 659 -------ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREH 702 (764)
T ss_pred -------chhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccc
Confidence 23467789999999885443 78899999999999977433
No 27
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=4.4e-34 Score=293.69 Aligned_cols=540 Identities=17% Similarity=0.215 Sum_probs=389.4
Q ss_pred eEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC
Q 001176 347 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK 426 (1132)
Q Consensus 347 ~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d 426 (1132)
..+-+-|.|..+...+ +.+.+++++...+.. +.+|...|.|++.+||.-++++|-.-
T Consensus 69 ~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~vHPdri~vatGQ~a 125 (626)
T KOG2106|consen 69 NNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMAVHPDRIRVATGQGA 125 (626)
T ss_pred ceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEeecCCceeeccCccc
Confidence 3456677776433333 466777776533322 67899999999999999999987544
Q ss_pred C--------eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCc--EEEEEEcCCCcEEEEECCCCeEEEEecCCCCC
Q 001176 427 H--------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ--LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 427 g--------~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~--~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
| .+++||..+-..+. .+..-...|+|++|++-... +..+--+.+..+.+||.+.+......+.....
T Consensus 126 g~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~ 202 (626)
T KOG2106|consen 126 GTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEV 202 (626)
T ss_pred ccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccce
Confidence 4 49999977654443 45556678999999985433 22333456778999999999888777777788
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE---ecC-CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD---YDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~---~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
|....|+|..+ .++.....+.+.+|+++.+..... +.. ....|.|++|.++|+.+- + |.+|.|.+|+..
T Consensus 203 v~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g----DS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 203 VFLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G----DSGGNILIWSKG 275 (626)
T ss_pred EEEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e----cCCceEEEEeCC
Confidence 89999999863 455555678999999987765442 222 235899999999998764 3 448889999998
Q ss_pred CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001176 573 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 652 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1132)
+.+..+....|.. .|.+++.-.+|. |++|+.|++|..|| ..-+.+...+.+...+.|..++-...+ |++|...+.
T Consensus 276 ~~~~~k~~~aH~g-gv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~ 350 (626)
T KOG2106|consen 276 TNRISKQVHAHDG-GVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNF 350 (626)
T ss_pred CceEEeEeeecCC-ceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccce
Confidence 8888777776666 899999998886 55599999999999 555566666666656677777654333 777777666
Q ss_pred EEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccc
Q 001176 653 IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 732 (1132)
Q Consensus 653 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1132)
|..=.++++..+..
T Consensus 351 iL~Gt~~~~f~~~v------------------------------------------------------------------ 364 (626)
T KOG2106|consen 351 ILQGTLENGFTLTV------------------------------------------------------------------ 364 (626)
T ss_pred EEEeeecCCceEEE------------------------------------------------------------------
Confidence 65544444311110
Q ss_pred cccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccc
Q 001176 733 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 812 (1132)
Q Consensus 733 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 812 (1132)
.+|......++.+|+..++++++.|+.+++|+-..
T Consensus 365 ---------------------------------~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k------------ 399 (626)
T KOG2106|consen 365 ---------------------------------QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK------------ 399 (626)
T ss_pred ---------------------------------EecccceeeEEcCCChhheeeccCcceEEEccCCc------------
Confidence 12556677889999999999999999999996111
Q ss_pred cccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCC
Q 001176 813 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 891 (1132)
Q Consensus 813 ~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 891 (1132)
.+|. . . - ..++.|+.|+|.| .+|.|. .|...+.|.++...+..-. ...++++++|+| +|
T Consensus 400 ---~~wt--------~-~----~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G 459 (626)
T KOG2106|consen 400 ---LEWT--------K-I----I-EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DG 459 (626)
T ss_pred ---eeEE--------E-E----e-cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CC
Confidence 0111 0 0 1 5678999999999 888888 8999999999855544444 488999999999 99
Q ss_pred CeEEEEeCCCcEEEEEcccce-eeee-eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCC
Q 001176 892 NIIAIGMEDSSVQIYNVRVDE-VKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 969 (1132)
Q Consensus 892 ~~lasg~~dg~v~iwd~~~~~-~~~~-l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 969 (1132)
.+||+|+.|+.|+||.+..+. ...+ -+.|..+|+.+.||+|++++.+.+.|-.|..|....-. ..
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~--~~----------- 526 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECK--QI----------- 526 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCc--cc-----------
Confidence 999999999999999987543 2222 23345889999999999999999999999999333211 10
Q ss_pred CCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCccee
Q 001176 970 PLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1049 (1132)
Q Consensus 970 ~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~ 1049 (1132)
.++..+.|....-. +.....+..|...|..++-+.++++||+|...|.|++|...--...
T Consensus 527 --ts~kDvkW~t~~c~------------------lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r 586 (626)
T KOG2106|consen 527 --TSVKDVKWATYTCT------------------LGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR 586 (626)
T ss_pred --ceecceeeeeeEEE------------------EEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc
Confidence 11223333211100 0001111334667888888999999999999999999998754443
Q ss_pred cccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 001176 1050 CRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1097 (1132)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~ 1097 (1132)
-+.+...+|+..+++++|.- +...+++.+.|..|..|++
T Consensus 587 --------A~~he~~ghs~~vt~V~Fl~-~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 587 --------APSHEYGGHSSHVTNVAFLC-KDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred --------ccceeeccccceeEEEEEee-CCceEEecCCCceEEEEEe
Confidence 23345569999999999998 4456666669999999997
No 28
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-34 Score=312.18 Aligned_cols=556 Identities=16% Similarity=0.225 Sum_probs=385.9
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
.+..|..++|+|...+ +.++-..|.|++||.+-+.++.. +.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 4578999999999984 77788899999999999988775 778999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+|+.|..|+||+..+.+++. ++.||-+.|..+.|++.-. .|+|+|.|.+|+||++++++++..++||..-|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987665 7899999999999999988 899999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCC-----------------------------ceEEecCCCCeEEEEEEcCCCCE
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLG-----------------------------SRVDYDAPGNWCTMMAYSADGTR 552 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----------------------------~~~~~~~~~~~v~~~~~s~~~~~ 552 (1132)
|+|.. ..++++|.|.+||+||+...+ ....+.+|...|+.++|+|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99987 799999999999999975311 11256788899999999999999
Q ss_pred EEEEecCCCCCCeEEEEeCCCCc--eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCC
Q 001176 553 LFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
+++|+. |+.|++|.....+ .+.+..+|.. .|.++-|+|..+.+++.|+|+.|++||+...+.++++.....
T Consensus 221 iVSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend-- 293 (1202)
T KOG0292|consen 221 IVSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND-- 293 (1202)
T ss_pred EEecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--
Confidence 999985 7779999987544 5667888888 899999999999999999999999999999999999975533
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCC
Q 001176 631 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 710 (1132)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 710 (1132)
..+.++.+|..++++.| .|+.+.+|.++.. +....+
T Consensus 294 RFW~laahP~lNLfAAg-HDsGm~VFkleRE-rpa~~v------------------------------------------ 329 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAG-HDSGMIVFKLERE-RPAYAV------------------------------------------ 329 (1202)
T ss_pred eEEEEEecCCcceeeee-cCCceEEEEEccc-CceEEE------------------------------------------
Confidence 78999999999887765 5556667776533 111111
Q ss_pred CCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeec--
Q 001176 711 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA-- 788 (1132)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-- 788 (1132)
.+..+....+..|+.+|+.+..... ...+.-++. .-..+.++.++|....++.++
T Consensus 330 ---------------------~~n~LfYvkd~~i~~~d~~t~~d~~-v~~lr~~g~-~~~~~~smsYNpae~~vlics~~ 386 (1202)
T KOG0292|consen 330 ---------------------NGNGLFYVKDRFIRSYDLRTQKDTA-VASLRRPGT-LWQPPRSLSYNPAENAVLICSNL 386 (1202)
T ss_pred ---------------------cCCEEEEEccceEEeeeccccccce-eEeccCCCc-ccCCcceeeeccccCeEEEEecc
Confidence 1112222336788888888733322 222222221 235678999999766554443
Q ss_pred ccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCC
Q 001176 789 SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTF 868 (1132)
Q Consensus 789 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~ 868 (1132)
.+|...++.+...... ........+ .....++-.+.++--+..-++.++.+-++..
T Consensus 387 ~n~~y~L~~ipk~~~~------------------~~~~~~~~k-----~tG~~a~fvarNrfavl~k~~~~v~ik~l~N- 442 (1202)
T KOG0292|consen 387 DNGEYELVQIPKDSDG------------------VSDGKDVKK-----GTGEGALFVARNRFAVLDKSNEQVVIKNLKN- 442 (1202)
T ss_pred CCCeEEEEEecCcccc------------------cCCchhhhc-----CCCCceEEEEecceEEEEecCcceEEecccc-
Confidence 3466666655432110 000000011 1223333333333222222345566655543
Q ss_pred eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEE
Q 001176 869 KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948 (1132)
Q Consensus 869 ~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iw 948 (1132)
+..+.+... ..+..|-+.. .|.+|+. ....|.+||++..+.+..++ -..|.-+.||+|..+++--+. .+|.|.
T Consensus 443 ~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~K-h~i~i~ 515 (1202)
T KOG0292|consen 443 KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLSK-HTITIA 515 (1202)
T ss_pred hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhccc-ceEEEE
Confidence 222333322 2334455544 5555543 34479999999888777765 457889999999988877664 468888
Q ss_pred ECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEE-EEeCCCCceeecCCCCCCCCCeEEEEEccCCC
Q 001176 949 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQIS-VYDSKLECSRSWSPKDALPAPISSAIYSCDGL 1027 (1132)
Q Consensus 949 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~-vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~ 1027 (1132)
+.+-.- +...... -.|.+-+|..+|-++.+..+.-=+ +-+-+.+.++++ ..+|.-.+. .|.
T Consensus 516 ~kkL~l------~~sihEt----iriksgawde~gVfiYtT~nHikYal~~GD~GIikTL------d~~iyitkv--~gn 577 (1202)
T KOG0292|consen 516 DKKLEL------LCSIHET----IRIKSGAWDEDGVFIYTTLNHIKYALENGDSGIIKTL------DKPIYITKV--KGN 577 (1202)
T ss_pred ecchhh------eecchhe----eEeeeceeccCceEEEEehhhhhhhhccCCcceEEec------ccceEEEEe--eCC
Confidence 765311 1111100 234556788887766664321100 111122223332 223322222 577
Q ss_pred EEEEEecCCcEEEEeCCCcc
Q 001176 1028 LVYAGFCDGAIGVFDAETLR 1047 (1132)
Q Consensus 1028 ~las~~~dg~i~vwd~~~~~ 1047 (1132)
.+++-..|+.+...+++.-+
T Consensus 578 ~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 578 KVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred EEEEEecCCCeEEEeechHH
Confidence 78888888888888876433
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.2e-36 Score=279.53 Aligned_cols=285 Identities=17% Similarity=0.276 Sum_probs=244.0
Q ss_pred CCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEe
Q 001176 355 QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY 434 (1132)
Q Consensus 355 g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~ 434 (1132)
..-+|++++.|.+|++|...+|.+..+ +....+.|+.+...||++.||+++.. .|++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEc
Confidence 335899999999999999999998764 34467789999999999999999654 5999999
Q ss_pred cCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEE
Q 001176 435 NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 514 (1132)
Q Consensus 435 ~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~ 514 (1132)
+++..- ...++.+|...|+++.|..||+ .++|||+||+++|||++...+.+.++ |..+|+++..+|+. .-|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEee
Confidence 998753 4557899999999999999999 89999999999999999977666664 77999999999876 789999
Q ss_pred ecCCeEEEEEcCCCCceEEecC-CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC------ceeeeeccccCCc
Q 001176 515 AIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------AIKRTYSGFRKRS 587 (1132)
Q Consensus 515 s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------~~~~~~~~~~~~~ 587 (1132)
..+|.|++||+....+...+.. ....|.+++..|||.+++.+. ..|..++|++-.+ +++..++.|.. -
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n----nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~ 217 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN----NKGNCYVWRLLNHQTASELEPVHKFQAHNG-H 217 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec----CCccEEEEEccCCCccccceEhhheecccc-e
Confidence 9999999999998766655444 345899999999999999885 3788999998654 35566777777 7
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCC-eeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeee
Q 001176 588 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 666 (1132)
Q Consensus 588 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1132)
+..+.+||++++|+++|.|.+++||+.++. +....+.+| ...+..++||.||.+|++|+.|+.+++|++..+ +.++
T Consensus 218 il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~ 294 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVR 294 (311)
T ss_pred EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccC-ceee
Confidence 888999999999999999999999999988 444445544 558999999999999999999999999999999 7777
Q ss_pred ecccccc
Q 001176 667 MLEGRAM 673 (1132)
Q Consensus 667 ~~~~~~~ 673 (1132)
...+|..
T Consensus 295 qy~gh~K 301 (311)
T KOG0315|consen 295 QYQGHHK 301 (311)
T ss_pred ecCCccc
Confidence 7777754
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-34 Score=300.33 Aligned_cols=464 Identities=16% Similarity=0.212 Sum_probs=348.6
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+..++..|.++.|+|...+++++-.+|.|.||+.++...++ .+.-..-+|++..|-+--+ .+++|+.|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 34488999999999999999999999999999999987766 4555678999999998777 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCeEEEEEEcC-CCCEEEEEec
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 558 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 558 (1132)
..+++.++.|.+|.+-|.+++.+|.. .+++++|.|-+|++||.+.. .+...+.+|.+.|.+++|+| |.+.+++++.
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999987 89999999999999999865 45668999999999999999 5578999987
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC--CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
|++|++|.+.+..+..++++|.. .|+|+.+-+.| .++++|+.|..|+|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 78899999999999999999998 89999998755 7999999999999999999999999998866 799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCC
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 716 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 716 (1132)
|+|.-.++++|+.||+++||+..+- ++...+.-
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~---------------------------------------------- 267 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY---------------------------------------------- 267 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc----------------------------------------------
Confidence 9999999999999999999997665 22222211
Q ss_pred cccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEE
Q 001176 717 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 796 (1132)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw 796 (1132)
.-+++.+++..+.+..+++|...|.+.+=
T Consensus 268 ---------------------------------------------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 268 ---------------------------------------------------GLERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred ---------------------------------------------------CCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 12345666666666667777777766541
Q ss_pred eeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeC--CeEEEE------ECCCC
Q 001176 797 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG--GKVSLF------NMMTF 868 (1132)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sd--g~i~vw------d~~~~ 868 (1132)
+ ....-.+.+++.|+.+-+... -.+.+- ++..|
T Consensus 297 -l--------------------------------------greeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~Dg 337 (794)
T KOG0276|consen 297 -L--------------------------------------GREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDG 337 (794)
T ss_pred -c--------------------------------------cCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCC
Confidence 1 112223445555554443321 112221 22233
Q ss_pred eEEE----EeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCc
Q 001176 869 KVMT----MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 944 (1132)
Q Consensus 869 ~~~~----~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~ 944 (1132)
+.+. .+-...--...++-+| +|++++++ .||.-.||..-. --..+.+.-....|++|....+.--.++.
T Consensus 338 ErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vc-gdGEyiIyTala-----~RnK~fG~~~eFvw~~dsne~avRes~~~ 410 (794)
T KOG0276|consen 338 ERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVC-GDGEYIIYTALA-----LRNKAFGSGLEFVWAADSNEFAVRESNGN 410 (794)
T ss_pred ccccchhhhccccccchHHhccCC-CCcEEEEe-cCccEEEEEeee-----hhhcccccceeEEEcCCCCeEEEEecCCc
Confidence 3221 1111111235678889 88888655 688888886322 11224455677899999888888888888
Q ss_pred EEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEc
Q 001176 945 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYS 1023 (1132)
Q Consensus 945 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s 1023 (1132)
|+++ ++.+..+... .-..+.+--.|.+|.+..++.+++||. ++..++.+. -....+.|+
T Consensus 411 vki~--knfke~ksi~------------~~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~------v~~k~v~w~ 470 (794)
T KOG0276|consen 411 VKIF--KNFKEHKSIR------------PDMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIE------VTSKHVYWS 470 (794)
T ss_pred eEEE--ecceeccccc------------cccceeeecCCceEEEEeCCeEEEEEcccceEEEEEe------eccceeEEe
Confidence 9888 5444222111 011122233456677788999999998 777777763 345678999
Q ss_pred cCCCEEEEEecCCcEEEEeC
Q 001176 1024 CDGLLVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 1024 ~dg~~las~~~dg~i~vwd~ 1043 (1132)
.+|.+++.++.| ..+++.+
T Consensus 471 d~g~lVai~~d~-Sfyil~~ 489 (794)
T KOG0276|consen 471 DNGELVAIAGDD-SFYILKF 489 (794)
T ss_pred cCCCEEEEEecC-ceeEEEe
Confidence 999999988855 4455443
No 31
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-35 Score=279.90 Aligned_cols=296 Identities=17% Similarity=0.202 Sum_probs=248.2
Q ss_pred cccccceEEEEEecCC-ceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEE
Q 001176 766 SIAASKVVRLIYTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 844 (1132)
Q Consensus 766 ~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~ 844 (1132)
.+|.+.|+.++..+.+ ..+++++.|..+.+|++... |.+.|.++.. +.| | ...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--H-sH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--H-SHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--c-ceEecceE
Confidence 3489999999999874 56778889999999998653 3344554443 666 7 77999999
Q ss_pred EeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecc-ccC
Q 001176 845 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG-HQN 922 (1132)
Q Consensus 845 ~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~ 922 (1132)
.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ +.+.+++|+.|.+|.+|++........... |.+
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 999999999999 99999999999999999999999999999999 899999999999999999876544443332 378
Q ss_pred CeeEEEEcCC--CCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC
Q 001176 923 RITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS 999 (1132)
Q Consensus 923 ~V~~l~~spd--g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~ 999 (1132)
-|+|+.|+|. ..+++++|.|++|++||+.+.+ ....+.||. ..++.+++||||...++ +.||.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 8999999998 6899999999999999999866 445566666 68999999999999999 57999999999
Q ss_pred -CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCC
Q 001176 1000 -KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS 1078 (1132)
Q Consensus 1000 -~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 1078 (1132)
.++.+..+ .|...|.+++|+|+...|+.+. +..|+|||++++..+..+.+....+ .........+.++|++
T Consensus 222 ~~~k~lysl----~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~--s~~~~~~~clslaws~- 293 (315)
T KOG0279|consen 222 NEGKNLYSL----EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP--SSKAGDPICLSLAWSA- 293 (315)
T ss_pred cCCceeEec----cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc--ccccCCcEEEEEEEcC-
Confidence 66665554 3478999999999988777666 5669999999999998887664333 2234456778999999
Q ss_pred CCCeEEEEeCCCcEEEEecCC
Q 001176 1079 EPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1079 ~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
||..|++|..|+.|++|.+..
T Consensus 294 dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 294 DGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CCcEEEeeecCCcEEEEEeec
Confidence 999999999999999999864
No 32
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-33 Score=307.72 Aligned_cols=474 Identities=16% Similarity=0.239 Sum_probs=339.5
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+..-+..|..++|+|...+++++-..|.|++||.+-+.++. .+..|.++|..++|+|++. +++|||.|-.|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 33456789999999999999999999999999999988776 6889999999999999999 999999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
..+.+++.++.||-+-|..+.|++.- .+|+++|.|.+|+||++.+.+++..+++|.+.|.|..|+|....+++++.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 99999999999999999999999876 79999999999999999999999999999999999999999999999987
Q ss_pred CCCCeEEEEeCCCCc-----------------------------eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 001176 561 EGESHLVEWNESEGA-----------------------------IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 611 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 611 (1132)
|.+|++||+..-+ ....+.||.. .|+-++|+|.-..+++|+.|+.|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 7789999984210 1234567776 7999999999999999999999999
Q ss_pred EECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCccccc
Q 001176 612 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 691 (1132)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1132)
|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||++.. ..++.++.
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrr--------------------- 290 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRR--------------------- 290 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeec---------------------
Confidence 99986554333333445668999999999999999999999999999766 33333322
Q ss_pred ccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccc
Q 001176 692 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 771 (1132)
Q Consensus 692 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1132)
..++
T Consensus 291 ----------------------------------------------------------------------------endR 294 (1202)
T KOG0292|consen 291 ----------------------------------------------------------------------------ENDR 294 (1202)
T ss_pred ----------------------------------------------------------------------------cCCe
Confidence 2345
Q ss_pred eEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCE
Q 001176 772 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 851 (1132)
Q Consensus 772 i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~ 851 (1132)
...++.+|....+ +++.|+-+.||.++. +.++.++ .++.
T Consensus 295 FW~laahP~lNLf-AAgHDsGm~VFkleR------------------------------------Erpa~~v----~~n~ 333 (1202)
T KOG0292|consen 295 FWILAAHPELNLF-AAGHDSGMIVFKLER------------------------------------ERPAYAV----NGNG 333 (1202)
T ss_pred EEEEEecCCccee-eeecCCceEEEEEcc------------------------------------cCceEEE----cCCE
Confidence 5678888888844 455565666776531 3344444 3445
Q ss_pred EEEeeCCeEEEEECCCCeE--EEEeeCC---CCCeEEEEEeCCCCCeEEEEeCC-CcEEEEEcccceeeeeec----ccc
Q 001176 852 VMSASGGKVSLFNMMTFKV--MTMFMSP---PPAATFLAFHPQDNNIIAIGMED-SSVQIYNVRVDEVKTKLK----GHQ 921 (1132)
Q Consensus 852 la~~sdg~i~vwd~~~~~~--~~~~~~~---~~~i~~l~~sp~~~~~lasg~~d-g~v~iwd~~~~~~~~~l~----~h~ 921 (1132)
|....|..|+-+|+.+.+- +..++.. ..++.++.|+|..+..+++...| |.--++.+..... .... ...
T Consensus 334 LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~-~~~~~~~~~k~ 412 (1202)
T KOG0292|consen 334 LFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSD-GVSDGKDVKKG 412 (1202)
T ss_pred EEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCccc-ccCCchhhhcC
Confidence 5555589999999987543 3444433 36788999999555555554444 4444554443211 0000 011
Q ss_pred CCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC-C
Q 001176 922 NRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-K 1000 (1132)
Q Consensus 922 ~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~ 1000 (1132)
....++-.+ ..++.+---.+..+.+=++.+....+ +... ..+..+-+.-+|.+|+. +...|.+||+ .
T Consensus 413 tG~~a~fva-rNrfavl~k~~~~v~ik~l~N~vtkk---l~~~-------~~~~~IF~ag~g~lll~-~~~~v~lfdvQq 480 (1202)
T KOG0292|consen 413 TGEGALFVA-RNRFAVLDKSNEQVVIKNLKNKVTKK---LLLP-------ESTDDIFYAGTGNLLLR-SPDSVTLFDVQQ 480 (1202)
T ss_pred CCCceEEEE-ecceEEEEecCcceEEecccchhhhc---ccCc-------ccccceeeccCccEEEE-cCCeEEEEEeec
Confidence 122233222 22333323334455555555422111 1111 12334455555554443 5567888888 4
Q ss_pred CCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001176 1001 LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1044 (1132)
Q Consensus 1001 ~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~ 1044 (1132)
...+..+. ...+.-+.||+|..++|.-+ -.+|.|.+-.
T Consensus 481 ~~~~~si~-----~s~vkyvvws~dm~~vAll~-Kh~i~i~~kk 518 (1202)
T KOG0292|consen 481 KKKVGSIK-----VSKVKYVVWSNDMSRVALLS-KHTITIADKK 518 (1202)
T ss_pred ceEEEEEe-----cCceeEEEEcCccchhhhcc-cceEEEEecc
Confidence 44444443 46788888888887766555 3455555543
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-34 Score=286.45 Aligned_cols=339 Identities=18% Similarity=0.283 Sum_probs=290.5
Q ss_pred eeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEE
Q 001176 445 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 524 (1132)
Q Consensus 445 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd 524 (1132)
.|..|+..|.+++.+|+.+ +++||+.|....+|++.+|.....+.+|...|+++.|+. +|.+|+||..+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecCCCccEEEEE
Confidence 6889999999999999777 899999999999999999999999999999999999976 459999999999999999
Q ss_pred cCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE
Q 001176 525 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 604 (1132)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 604 (1132)
..++.....+......+.-+.|+|-+..|++|+. ||.+.+|.+.++...+.+.||.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999988878888999999999999999864 88899999999889999999887 899999999999999999
Q ss_pred cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCC
Q 001176 605 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 684 (1132)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1132)
.||+|++||+.+++++..+....+ ....++.++..+..++.|+.++.+.+-+..++ +.+....+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv~~~n~-------------- 273 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVVNCNNG-------------- 273 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEEEecCC--------------
Confidence 999999999999999999875543 36789999999999999999999998877666 22211111
Q ss_pred CCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecC
Q 001176 685 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 764 (1132)
Q Consensus 685 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~ 764 (1132)
T Consensus 274 -------------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 274 -------------------------------------------------------------------------------- 273 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEE
Q 001176 765 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 844 (1132)
Q Consensus 765 ~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~ 844 (1132)
++..+. ....+....|..+.
T Consensus 274 ---------------~~~~l~---------------------------------------------~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 274 ---------------TVPELK---------------------------------------------PSQEELDESVESIP 293 (399)
T ss_pred ---------------CCcccc---------------------------------------------ccchhhhhhhhhcc
Confidence 000000 00000033445555
Q ss_pred EeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCC
Q 001176 845 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 923 (1132)
Q Consensus 845 ~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 923 (1132)
++..-.+.|+|+ ||+|.|||+.+.++...+. |...|+.+.|-+ ..+|++++.||.|++||.++|+++.++.||...
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchh
Confidence 666777889999 9999999998877655554 888899999987 468899999999999999999999999999999
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEECC
Q 001176 924 ITGLAFSPTLNALVSSGADAQLCMWSID 951 (1132)
Q Consensus 924 V~~l~~spdg~~l~s~~~D~~i~iwd~~ 951 (1132)
|.+++++|++++++|+|.|++.++++..
T Consensus 371 Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 371 ILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999864
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.4e-35 Score=272.45 Aligned_cols=295 Identities=14% Similarity=0.241 Sum_probs=252.0
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc--eeeeeccccCC
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKR 586 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~ 586 (1132)
-+|++++.|.+||+|...++.+...+....+.|..+...|+++.|++++ ...|++||+++++ ++.+|.+|..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 6899999999999999999999999999999999999999999999986 5669999999875 6889999987
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeee
Q 001176 587 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 666 (1132)
Q Consensus 587 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1132)
.|.++.|.-+|+.+++||+||+++|||++...+...+... .+|+++..+|+...|++|..+|.|++||+.+. ....
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 8999999999999999999999999999996665555433 58999999999999999999999999999766 2111
Q ss_pred eccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceee
Q 001176 667 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 746 (1132)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 746 (1132)
.+
T Consensus 161 ~l------------------------------------------------------------------------------ 162 (311)
T KOG0315|consen 161 EL------------------------------------------------------------------------------ 162 (311)
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred eecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcc
Q 001176 747 WRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLM 826 (1132)
Q Consensus 747 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 826 (1132)
.|+ ....|+++.+.|||..++++...|...+|++..... .+....
T Consensus 163 ----------------iPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P 207 (311)
T KOG0315|consen 163 ----------------IPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEP 207 (311)
T ss_pred ----------------CCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccceE
Confidence 111 235689999999999999999999999999864221 111111
Q ss_pred cccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCC-eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 001176 827 TNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQ 904 (1132)
Q Consensus 827 ~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~ 904 (1132)
...++. | .+.+..+.+|||+++||+++ |.+++||+.++. +.-..+.+|...+...+||. ++.+|++|+.|+.++
T Consensus 208 ~~k~~a--h-~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 208 VHKFQA--H-NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTAR 283 (311)
T ss_pred hhheec--c-cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCcee
Confidence 111333 6 88899999999999999998 999999999988 77778899999999999999 999999999999999
Q ss_pred EEEcccceeeeeeccccCCeeEEEEc
Q 001176 905 IYNVRVDEVKTKLKGHQNRITGLAFS 930 (1132)
Q Consensus 905 iwd~~~~~~~~~l~~h~~~V~~l~~s 930 (1132)
+||+..++.+....+|.....|++..
T Consensus 284 lW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 284 LWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecccccCceeeecCCcccccEEEEee
Confidence 99999999999999999888887753
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-35 Score=293.44 Aligned_cols=309 Identities=19% Similarity=0.289 Sum_probs=271.4
Q ss_pred ecCCCCCCceeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccc
Q 001176 317 FAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 396 (1132)
Q Consensus 317 ~~~~g~~~~~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1132)
..|.+..-....+-..|....+...|..+|+.+-|+|+-. ++++++.|++|++||..+|+....
T Consensus 82 g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~--------------- 145 (406)
T KOG0295|consen 82 GDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS--------------- 145 (406)
T ss_pred CCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh---------------
Confidence 3344433333333334444444455999999999999987 899999999999999999998654
Q ss_pred cccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcE
Q 001176 397 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 397 ~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v 476 (1132)
+.||...|.+|+|+..|++||+++.|-.+.+||.++. ..+...+.+|...|.+++|-|.|. +|++++.|.+|
T Consensus 146 ----LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~ti 217 (406)
T KOG0295|consen 146 ----LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTI 217 (406)
T ss_pred ----hhccccceeEEEEecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccce
Confidence 8899999999999999999999999999999999873 333346789999999999999998 89999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCC-------
Q 001176 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD------- 549 (1132)
Q Consensus 477 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~------- 549 (1132)
+.|++.+|-++++|.+|...|..++. ..||.++++++.|.++++|-+.+..+...+..|..+|.+++|.|.
T Consensus 218 k~We~~tg~cv~t~~~h~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~ 295 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFPGHSEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSIS 295 (406)
T ss_pred eEEecccceeEEeccCchHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchh
Confidence 99999999999999999999999987 457799999999999999999999999999999999999999773
Q ss_pred --------CCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 001176 550 --------GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 621 (1132)
Q Consensus 550 --------~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1132)
+.++.+++. |++|++||+.++.++.++.+|.. .|..++|+|.|+||+++.+|+++++||++++++..
T Consensus 296 ~at~~~~~~~~l~s~Sr----DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 296 EATGSTNGGQVLGSGSR----DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred hccCCCCCccEEEeecc----cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence 246666654 88899999999999999999988 99999999999999999999999999999999999
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 622 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
.+..|.+ -++++.|+.+..++++|+-|.++++|.-
T Consensus 371 ~~~ah~h--fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 371 TLEAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccCCCcc--eeEEEecCCCCceEEeccccceeeeeec
Confidence 9998866 7999999999999999999999999963
No 36
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-34 Score=296.42 Aligned_cols=281 Identities=18% Similarity=0.267 Sum_probs=254.5
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
....|++++|+.+|. +||+|+.||.++||+...+.... +..|+++|.++.|+.+|+||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l~~t--------------------l~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNLIST--------------------LGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCchhhhh--------------------hhccCCceEEEEEcCCCCEEE
Confidence 457899999999998 89999999999999987554322 677999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+++.|+++.+||..++.... .+.-|..+-.+|.|-.+.. +++++.|+.|+|+.+...+++.++.+|.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999987554 3556888878899987776 89999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCC---------EEEEEecCCCCCCeEEEEeCC
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT---------RLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~---------~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
|+|.+ .+|+++|.|+++++|.+........+..|...|+.+.|+|+|. .+++++. +++|++||+.
T Consensus 367 ~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~ 440 (524)
T KOG0273|consen 367 WNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVE 440 (524)
T ss_pred ECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEcc
Confidence 98865 8999999999999999999889999999999999999999653 5777765 8899999999
Q ss_pred CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001176 573 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 652 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1132)
.+.++.+|..|.. +|.+++|+|+|.++++|+.||.|.+|+..+++.++...... .|..++|+.+|..|..+..|+.
T Consensus 441 ~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 441 SGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred CCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999999988 99999999999999999999999999999999999987653 5899999999999999999999
Q ss_pred EEEEEcC
Q 001176 653 IKILANS 659 (1132)
Q Consensus 653 i~iw~~~ 659 (1132)
+++.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998874
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9e-36 Score=298.84 Aligned_cols=343 Identities=20% Similarity=0.296 Sum_probs=276.6
Q ss_pred ccCCCCCCCCcccccccchhhHhhhcccCCcceeeecCCCCCCc-eecc----CC----cccceEEee-c-CCCCeeEEE
Q 001176 282 KHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPN-VYSQ----DD----LTKTVVRTL-N-QGSNVMSMD 350 (1132)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~----d~----~~~~~~~~l-~-h~~~V~~~~ 350 (1132)
++.+.|.+++.++|...--.+...+.....-.....-|+..+.. .+.. ++ .+.+.+++- . -+-.|..|.
T Consensus 24 ~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~~d~~~~~p~~~~~~~~~pp~~~~~dp~~~~~tKf~h~s~NKvkc~V~~v~ 103 (464)
T KOG0284|consen 24 KRLRKPVARRTVDYNSPVCNYRQNRRWQYDRDRALLQPDSSYIIDLVPPSLYLDDPSSAFTTKFVHTSSNKVKCPVNVVR 103 (464)
T ss_pred ccccchhhhcccCCCcHHHHHHHHHhhcccccccccCCCchhhhcccChhhccCCcccccccceEeccccccccceeeEE
Confidence 45667777889999988666555554433311222222222211 1111 11 122222222 2 456899999
Q ss_pred EccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEE
Q 001176 351 FHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVH 430 (1132)
Q Consensus 351 ~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~ 430 (1132)
|.|+|++ |++|+..|.+.+|+..+-. ...++..|..+|+++.||++|.++++|+.+|.|+
T Consensus 104 WtPeGRR-Lltgs~SGEFtLWNg~~fn-------------------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iK 163 (464)
T KOG0284|consen 104 WTPEGRR-LLTGSQSGEFTLWNGTSFN-------------------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIK 163 (464)
T ss_pred EcCCCce-eEeecccccEEEecCceee-------------------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEE
Confidence 9999996 8899999999999974321 1123678999999999999999999999999999
Q ss_pred EEEecCCCceeeeeeeecc-cCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCcc
Q 001176 431 LYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQ 509 (1132)
Q Consensus 431 iwd~~~~~~~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 509 (1132)
+|+..-... + .+.+| ...|++++|+|++. .++||+.||+|+|||....+....+.||.-.|.++.|+|.. .
T Consensus 164 yWqpnmnnV-k---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k--g 235 (464)
T KOG0284|consen 164 YWQPNMNNV-K---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK--G 235 (464)
T ss_pred ecccchhhh-H---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc--c
Confidence 999876432 2 34454 48999999999888 79999999999999999999989999999999999999987 8
Q ss_pred EEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceE
Q 001176 510 FIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 589 (1132)
Q Consensus 510 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 589 (1132)
+|+++|.|+.|++||.+++.++..+..|...|..+.|++++++|++++. |..++++|+++.+.+.++++|.. .+.
T Consensus 236 LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r~Hkk-dv~ 310 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYRGHKK-DVT 310 (464)
T ss_pred eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhhcchh-hhe
Confidence 9999999999999999999999999999999999999999999999975 77899999999999999999998 899
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 590 VVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 590 ~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
++.|+|-. ..|.+|+.||.|..|.+...+++..+. +.+...|.+++|+|=|.+|++|+.|.++++|.-
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99999965 566779999999999998667666664 234558999999999999999999999999974
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.7e-35 Score=287.55 Aligned_cols=295 Identities=18% Similarity=0.272 Sum_probs=265.7
Q ss_pred cccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEE
Q 001176 332 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 410 (1132)
Q Consensus 332 ~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 410 (1132)
.|.+..+.+. |.+.|.|+++.|... .+++|+.|+++.|||+.+|+...+ +.||...|..
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~ 198 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRG 198 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeee
Confidence 3566777788 999999999999987 799999999999999999988764 7899999999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe
Q 001176 411 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 490 (1132)
Q Consensus 411 v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 490 (1132)
+++|+--.|+++++.|+.|+-||++..+.++ .+.||-..|.|++..|.-. .|+||+.|.+++|||+++...+..+
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEe
Confidence 9999999999999999999999999988777 5789999999999999988 8999999999999999999999999
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
.||..+|.++.+.|.. ..+++||.|++|++||++.++....+..|...+.+++.+|....+++++. ..|..|+
T Consensus 274 ~GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-----dnik~w~ 346 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-----DNIKQWK 346 (460)
T ss_pred cCCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-----ccceecc
Confidence 9999999999998765 68999999999999999999999999999999999999999999999874 2399999
Q ss_pred CCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe---CC---CCCCCcceEEEcCCCCEE
Q 001176 571 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD---AD---GGLPASPRLRFNKEGSLL 644 (1132)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~---~~~~~v~~~~~s~~~~~l 644 (1132)
+..|..+..+.+|.. .+++++.+.|+ ++++|+++|.+.+||.+++...+... .. .....|.+.+|...|..|
T Consensus 347 ~p~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rl 424 (460)
T KOG0285|consen 347 LPEGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRL 424 (460)
T ss_pred CCccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceE
Confidence 999999999999887 89999988775 78899999999999999987665552 11 123468899999999999
Q ss_pred EEEeCCCcEEEEEcCC
Q 001176 645 AVTTSDNGIKILANSD 660 (1132)
Q Consensus 645 ~~~~~dg~i~iw~~~~ 660 (1132)
++|..|.+|++|.-..
T Consensus 425 it~eadKtIk~~keDe 440 (460)
T KOG0285|consen 425 ITGEADKTIKMYKEDE 440 (460)
T ss_pred EeccCCcceEEEeccc
Confidence 9999999999997543
No 39
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=268.24 Aligned_cols=292 Identities=20% Similarity=0.305 Sum_probs=239.1
Q ss_pred eEEeec-CCCCeeEEEEccC-CCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 336 VVRTLN-QGSNVMSMDFHPQ-QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spd-g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
.++++. |++.|+.++|+|- |. +||+|+.|+.|+||+...+....- ...+-.+|+..|.+++|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 356666 8999999999999 87 899999999999999985332110 01112479999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC---eEEEEe
Q 001176 414 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTF 490 (1132)
Q Consensus 414 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~---~~~~~~ 490 (1132)
+|.|++||+|+.|.++.||.-..+ .+.+..+++||...|.|++|+++|. +||||++|+.|-||.+..+ .++..+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 999999999999999999997754 4666778999999999999999999 9999999999999998743 567889
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
+.|...|..+.|+|.. .+|+++|.|++|++|+-... .+...+.+|...|.+++|++.|..|++++. |++++
T Consensus 147 ~~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 9999999999999987 79999999999999987632 356788999999999999999999999974 88899
Q ss_pred EEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEE-----eCCCCCCCcceEEEcC-CC
Q 001176 568 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-----DADGGLPASPRLRFNK-EG 641 (1132)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v~~~~~s~-~~ 641 (1132)
+|-.. ..+.+.+...+..+.|. ...+++++.|+.|+++.-...-.-..+ ..+.|...|++++|+| -.
T Consensus 221 Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~ 293 (312)
T KOG0645|consen 221 IWRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS 293 (312)
T ss_pred eeeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC
Confidence 99755 23333344478889998 457999999999999976642111111 1223344899999999 47
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 001176 642 SLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~ 659 (1132)
++|++|++||.|++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 899999999999999864
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.4e-33 Score=276.89 Aligned_cols=329 Identities=14% Similarity=0.191 Sum_probs=278.1
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+..|+++|.+++.+|+.+++|+|+.|..-.+|++.++.... .+.+|+..|+++.|+.||. +||||+-+|.|+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 66799999999999999999999999999999999998544 6889999999999999999 999999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
..++.....+...-..+.-+.|+|.. .+|+.|+.||.+.+|.+.+......+.+|..++++=.|.|+|++++++..
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-- 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-- 210 (399)
T ss_pred cccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec--
Confidence 99999988887667778889999955 89999999999999999998888899999999999999999999999974
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC--------C-CCCC
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD--------G-GLPA 631 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~-~~~~ 631 (1132)
+++|++||+.++.++..+.+.......++.++..+..++.|+.++.+++-+..+++.+...... . ....
T Consensus 211 --dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 211 --DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred --CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 8899999999999999988766667888999999999999999999999999998888776531 0 1112
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCC
Q 001176 632 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 711 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 711 (1132)
|-++.++..-.+.|+|+-||+|.|||+...
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-------------------------------------------------- 318 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAS-------------------------------------------------- 318 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccc--------------------------------------------------
Confidence 333334444455666666666666665322
Q ss_pred CCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccc
Q 001176 712 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 791 (1132)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 791 (1132)
T Consensus 319 -------------------------------------------------------------------------------- 318 (399)
T KOG0296|consen 319 -------------------------------------------------------------------------------- 318 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeE
Q 001176 792 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV 870 (1132)
Q Consensus 792 ~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 870 (1132)
.+ .. .. .| ...|+.+.|-+ ..+|+++. +|+|+.||..+|++
T Consensus 319 ----------~~----------------------R~--~c--~h-e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 319 ----------TL----------------------RH--IC--EH-EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred ----------hh----------------------he--ec--cC-CCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence 00 00 00 15 67788888888 56677666 99999999999999
Q ss_pred EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcc
Q 001176 871 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 909 (1132)
Q Consensus 871 ~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~ 909 (1132)
+.++.+|...|.+++++| +++++++++.|++.+||++.
T Consensus 361 ~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 361 KFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999999999 89999999999999999864
No 41
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=7.4e-32 Score=277.41 Aligned_cols=495 Identities=15% Similarity=0.209 Sum_probs=364.8
Q ss_pred cccccccchhhHhhhcccCCcceeeecCCCCCCceec---------------cCCcccceEEeec-CCCCeeEEEEccC-
Q 001176 292 GMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYS---------------QDDLTKTVVRTLN-QGSNVMSMDFHPQ- 354 (1132)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~---------------~d~~~~~~~~~l~-h~~~V~~~~~spd- 354 (1132)
.+.|+..+..|-....+...+.|++..||.-.++.+. ||..+...+..+. -...|+|++||+-
T Consensus 87 ~Vl~n~ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~ 166 (626)
T KOG2106|consen 87 GVLYNWEERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKIN 166 (626)
T ss_pred EEEEeehhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccC
Confidence 5666666655555666777899999999876655433 3334444555555 6779999999983
Q ss_pred -CCeEEEE-EcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEE
Q 001176 355 -QQTILLV-GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY 432 (1132)
Q Consensus 355 -g~~lla~-g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iw 432 (1132)
|..+++. -+.+..+.|||+..+..... .+.....|....|+|.+..|+.....+.+.+|
T Consensus 167 ~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw 227 (626)
T KOG2106|consen 167 GGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLATFHPTDPNLIITCGKGHLYFW 227 (626)
T ss_pred CCceEEEecCCCccccchhhchhhhccCc-------------------ceeccceEEEEEeccCCCcEEEEeCCceEEEE
Confidence 4433333 24567899999988766542 33456678899999976655555577889999
Q ss_pred EecCCCceeeeeeeeccc-CCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEE
Q 001176 433 TYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 511 (1132)
Q Consensus 433 d~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l 511 (1132)
+.+++...+....++.+. ..|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++...+ ..|
T Consensus 228 ~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~---Gtl 301 (626)
T KOG2106|consen 228 TLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD---GTL 301 (626)
T ss_pred EccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC---ccE
Confidence 999988877666666543 5799999999998 899999999999999888887777799999999998654 367
Q ss_pred EEEecCCeEEEEEcCCCCceE--EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceE
Q 001176 512 FSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 589 (1132)
Q Consensus 512 ~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 589 (1132)
++|+.|+.|..|| ..-+.+. .+...-+.|+.++-...+ |+.+.. .+.|..=.++++-. ....+|.+ ...
T Consensus 302 lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTt----rN~iL~Gt~~~~f~-~~v~gh~d-elw 372 (626)
T KOG2106|consen 302 LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTT----RNFILQGTLENGFT-LTVQGHGD-ELW 372 (626)
T ss_pred eecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeec----cceEEEeeecCCce-EEEEeccc-cee
Confidence 7799999999999 3333333 344445577766643333 555543 33454444444433 33456666 788
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecc
Q 001176 590 VVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 590 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
.++.+|+.+++++++.|+.+++|+ ..+++.+.... .++.++.|+|.| .++.|+..|...+.|.++. .++..
T Consensus 373 gla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~-- 443 (626)
T KOG2106|consen 373 GLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTI-- 443 (626)
T ss_pred eEEcCCChhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEE--
Confidence 899999999999999999999999 44555444332 267899999999 9999999999999998774 32221
Q ss_pred ccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeec
Q 001176 670 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 749 (1132)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~ 749 (1132)
|.
T Consensus 444 -~~----------------------------------------------------------------------------- 445 (626)
T KOG2106|consen 444 -HT----------------------------------------------------------------------------- 445 (626)
T ss_pred -Ee-----------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCccccc
Q 001176 750 PDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 829 (1132)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 829 (1132)
...++..+.|+|+|..+++++.|+.|++|.+... |..+...
T Consensus 446 ------------------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~---------------------g~~y~r~ 486 (626)
T KOG2106|consen 446 ------------------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN---------------------GRKYSRV 486 (626)
T ss_pred ------------------cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC---------------------CcEEEEe
Confidence 2356889999999999999999999999987532 2222221
Q ss_pred CCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEE--------------e----eCCCCCeEEEEEeCCC
Q 001176 830 INESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM--------------F----MSPPPAATFLAFHPQD 890 (1132)
Q Consensus 830 ~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~--------------~----~~~~~~i~~l~~sp~~ 890 (1132)
-.. + ..+|+.+.||+|++++.+-+ |-.|-.|.....+.+.. | ..+...|..++-+. .
T Consensus 487 ~k~--~-gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~ 562 (626)
T KOG2106|consen 487 GKC--S-GSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-C 562 (626)
T ss_pred eee--c-CceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-h
Confidence 111 4 57899999999999999998 88899995432221111 1 12455677778887 8
Q ss_pred CCeEEEEeCCCcEEEEEcccce---eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEEC
Q 001176 891 NNIIAIGMEDSSVQIYNVRVDE---VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 950 (1132)
Q Consensus 891 ~~~lasg~~dg~v~iwd~~~~~---~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~ 950 (1132)
.+++|+|.+.|.|++|...-.+ ....+.+|++-|++++|.-+...+++.+.|..|..|++
T Consensus 563 ~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 563 EKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 8999999999999999876433 34567899999999999999999999999999999986
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.3e-34 Score=273.99 Aligned_cols=285 Identities=18% Similarity=0.248 Sum_probs=249.3
Q ss_pred cCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
.|++.|+.+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|++.|..+.|.+|++.|
T Consensus 45 gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~s~i 105 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDGSHI 105 (338)
T ss_pred CCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCCCEE
Confidence 3999999999999998 79999999999999976443211 1267999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
++++.|.+|+.||+++|++.+ .+++|..-|+.+.-+.-|.. ++.|++.||++++||+++...++++. ....++++
T Consensus 106 ~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv 180 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV 180 (338)
T ss_pred EEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence 999999999999999999776 67899999999996656665 78999999999999999998888775 45678999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC----Cce
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAI 576 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~~ 576 (1132)
.|.... ..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+. +.++++||.+. .++
T Consensus 181 ~f~d~s--~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 181 GFKDTS--DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred Eecccc--cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCCce
Confidence 986544 78999999999999999999999999999999999999999999999876 78899999974 345
Q ss_pred eeeeccccCC---ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001176 577 KRTYSGFRKR---SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 653 (1132)
Q Consensus 577 ~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1132)
+..+.++... ....++|+|++..+-+|+.|..+++||......+..+++|.+ .|++++|+|...+|.+++.|.+|
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCcee
Confidence 7778776431 345689999999999999999999999999999999988755 89999999999999999999998
Q ss_pred EEEE
Q 001176 654 KILA 657 (1132)
Q Consensus 654 ~iw~ 657 (1132)
.+=.
T Consensus 333 ~lge 336 (338)
T KOG0265|consen 333 YLGE 336 (338)
T ss_pred Eeec
Confidence 8743
No 43
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.3e-30 Score=274.29 Aligned_cols=550 Identities=12% Similarity=0.127 Sum_probs=387.1
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecc-cCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
-..+|.++|||.+.+.||.+-.||.|.||++..+=... ..+.++ ...|.+++|++.++ |.+.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence 45689999999999999999999999999999854333 345555 45899999996664 8899999999999999
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE--EecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+++..+.+....+.|++++.+|.. ..++.|+.||.+..++...+.... .+.-..+++.+++|+|++..+++|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999999876 789999999977777776655443 34445679999999999999999985
Q ss_pred CCCCeEEEEeCCCCceeeeec----c-c--cCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001176 561 EGESHLVEWNESEGAIKRTYS----G-F--RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 633 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~----~-~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1132)
|+.|++||..++..+.... + . ...-|.++.|-.+ ..+++|..-|.|.+||...+.+++.+..|.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 8899999999988766221 1 1 1224677777755 4789999999999999999999999988855 799
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCC
Q 001176 634 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 713 (1132)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 713 (1132)
+++.++++.++++++.|+.|..|...++... ++.
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---------wv~------------------------------------- 283 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---------WVI------------------------------------- 283 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc---------eee-------------------------------------
Confidence 9999999999999999999998887665221 000
Q ss_pred CCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeeccccee
Q 001176 714 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH 793 (1132)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i 793 (1132)
. .+...|...++++++.++ .+++++.|.++
T Consensus 284 ------------------------------------~------------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l 313 (691)
T KOG2048|consen 284 ------------------------------------N------------SRRDLHAHDVRSMAVIEN--ALISGGRDFTL 313 (691)
T ss_pred ------------------------------------e------------ccccCCcccceeeeeecc--eEEecceeeEE
Confidence 0 001226778888988887 78999999888
Q ss_pred EEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCe----
Q 001176 794 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK---- 869 (1132)
Q Consensus 794 ~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~---- 869 (1132)
.+-.....+. .+ .. +.. .. . ... -+...|..++++.-.+..+.+|.+.+..
T Consensus 314 ~i~~s~~~~~--------------~~---h~-~~~-~~---p-~~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~ 368 (691)
T KOG2048|consen 314 AICSSREFKN--------------MD---HR-QKN-LF---P-ASD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQGE 368 (691)
T ss_pred EEccccccCc--------------hh---hh-ccc-cc---c-ccc--eeecCccceEEEEeccccccceeccCcccccc
Confidence 8753321000 00 00 000 00 0 111 2334455555555567888889886651
Q ss_pred -----EEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee-----eccccCCeeEEEEcCCCCEEEEE
Q 001176 870 -----VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-----LKGHQNRITGLAFSPTLNALVSS 939 (1132)
Q Consensus 870 -----~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-----l~~h~~~V~~l~~spdg~~l~s~ 939 (1132)
+.+-.......|+|.+.|| +|+++|.++-. .++||.+.....+.. .....-....+.|+-|+..++.+
T Consensus 369 ~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~ 446 (691)
T KOG2048|consen 369 YNYIHLLKLFTKEKENISCAAISP-DGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLV 446 (691)
T ss_pred cChhhheeeecCCccceeeeccCC-CCCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEE
Confidence 1222223445699999999 99999987644 688888875322222 22223356788899999888888
Q ss_pred c-CCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCCCceeecCCCCCCCCCe
Q 001176 940 G-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPI 1017 (1132)
Q Consensus 940 ~-~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i 1017 (1132)
+ .+..+.+.+..+........+... .....++.++.|++|+|+++ +..+.|.+|++.+.....+.... ...|
T Consensus 447 s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl--n~~v 520 (691)
T KOG2048|consen 447 SKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL--NIDV 520 (691)
T ss_pred ecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc--Ccce
Confidence 7 677788888877553332222211 12267899999999999999 68899999999555544443222 5789
Q ss_pred EEEEEcc-CCCEEEEEecCCcEEEEeCCCcceecccCCC-ccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEE
Q 001176 1018 SSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGPS-AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV 1095 (1132)
Q Consensus 1018 ~~i~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW 1095 (1132)
++++|+| +-..|+.+..++.|+-||++..+ +.++... .+.-......-...+..+.|+|.+...++. -..+-+++-
T Consensus 521 Ta~~~~~~~~~~lvvats~nQv~efdi~~~~-l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~-~~a~w~~~i 598 (691)
T KOG2048|consen 521 TAAAFSPFVRNRLVVATSNNQVFEFDIEARN-LTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIV-YDAHWSCLI 598 (691)
T ss_pred eeeeccccccCcEEEEecCCeEEEEecchhh-hhhhhhccccccccChhhcCCCCceEEeCCCCccEEEE-EcCcEEEEE
Confidence 9999995 56678889999999999995433 3333221 111111122333456677777755444443 334555555
Q ss_pred ecC
Q 001176 1096 EPS 1098 (1132)
Q Consensus 1096 ~~~ 1098 (1132)
|..
T Consensus 599 d~~ 601 (691)
T KOG2048|consen 599 DFS 601 (691)
T ss_pred ecC
Confidence 553
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.1e-33 Score=275.40 Aligned_cols=246 Identities=16% Similarity=0.284 Sum_probs=228.8
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
++.+|.+.|.|+++.|-+.++++|+.|++|+|||+.+|+... ++.||...|..+++|+--. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 478999999999999999999999999999999999987554 7889999999999999888 89999999999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 480 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 480 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
|++..+.++.+.||-..|.+++.+|.- +.|++|+.|.++|+||+++...+..+.+|...|.++.+.|-...+++|+.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999999876 79999999999999999999999999999999999999998899999975
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
|++|++||++.|+...++..|.. .+.+++.+|....|++++.| .|+-|++..+..+..+.+|.. -|++++.+.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~ns 370 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVNS 370 (460)
T ss_pred ---CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeeecc
Confidence 88899999999999999998887 89999999999999998877 599999999999988877754 789999988
Q ss_pred CCCEEEEEeCCCcEEEEEcCCc
Q 001176 640 EGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|+ ++++|++.|.+.+||..++
T Consensus 371 D~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcC
Confidence 87 7888999999999999988
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=264.81 Aligned_cols=251 Identities=17% Similarity=0.291 Sum_probs=217.9
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
.+.+|++.|..+.|+|+|.+||+|+.|..|.+|++..... ....+++|.+.|..+.|.+|+. .|++++.|++|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 4789999999999999999999999999999999765432 2336789999999999999999 89999999999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 480 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 480 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
|+++|+.++.+++|..-|++++.... +-.++.+++.|+++++||++.......+. ..-.++++.|..++..+++++-
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rr-g~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI- 194 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRR-GPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI- 194 (338)
T ss_pred ecccceeeehhccccceeeecCcccc-CCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc-
Confidence 99999999999999999999984332 22678899999999999999877766553 3457899999999999999987
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC----CeeEEEEeCCCCCC--Ccc
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN----MNMLTTVDADGGLP--ASP 633 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~v~ 633 (1132)
|+.|.+||++.+....++.||.+ .|+.+..+++|.++.+-+.|.++++||++- .+++..+.++.+.- ...
T Consensus 195 ---dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 195 ---DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred ---cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 66699999999999999999999 999999999999999999999999999874 34466666654432 234
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 634 RLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.++|+|+++.+.+|+.|..+.+||....
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eeeccCCCCccccccccceEEEeecccc
Confidence 6789999999999999999999998654
No 46
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-33 Score=274.45 Aligned_cols=255 Identities=22% Similarity=0.329 Sum_probs=235.1
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|..+|+.+-|.|+-..+++++.|++|++||..+++... .++||...|.+++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 67899999999999999999999999999999999998755 7899999999999999999 899999999999999
Q ss_pred CCC-CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 481 VVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 481 ~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
..+ .++++.+.+|+..|.+++|.|.+ .++++++.|.+|+.|++.++-++..+.+|...|..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 67788888999999999999976 89999999999999999999999999999999999999999999999974
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCC---------------CCEEEEEEcCCeEEEEECCCCeeEEEEe
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT---------------RNRFLAAGDEFQIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1132)
+.++++|-..++++...+..|.- +|.+++|.|. ++++.+++.|++|++||+.++.++.++.
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred ---CceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence 88899999999998888998887 8999999773 2588899999999999999999999999
Q ss_pred CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccc
Q 001176 625 ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670 (1132)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (1132)
+|.. .|..++|+|.|++|+++.+|+++++||+.+. ++...+..
T Consensus 332 ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~a 374 (406)
T KOG0295|consen 332 GHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLEA 374 (406)
T ss_pred cccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccCC
Confidence 8865 8999999999999999999999999999988 66655543
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=311.84 Aligned_cols=291 Identities=20% Similarity=0.353 Sum_probs=253.4
Q ss_pred EEeec--CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCc--cccccceeeeecccccccccccccCCCCcCeEEEE
Q 001176 337 VRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 412 (1132)
Q Consensus 337 ~~~l~--h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 412 (1132)
..++. +...|.|+.|||+|+ .+++++.|+.+++|+..+++ .... +.+|...|.+++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA 210 (456)
T ss_pred eeeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence 44444 478999999999999 59999999999999997665 2221 468999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEecC-CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 413 WGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 413 ~spdg~~las~~~dg~i~iwd~~~-~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
|+|||+++++|+.|++|+|||+.. +..++ ++.+|...|++++|+|+++ ++++|+.|++|+|||+++++++..+.
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence 999999999999999999999943 34444 7889999999999999997 89999999999999999999999999
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCC--eEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
+|.+.|++++|.++ +.+|++++.|+.|++||+.++. ....+..+.. .++++.|+|+++++++++. ++.++
T Consensus 286 ~hs~~is~~~f~~d--~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~ 359 (456)
T KOG0266|consen 286 GHSDGISGLAFSPD--GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK 359 (456)
T ss_pred ccCCceEEEEECCC--CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence 99999999999775 4899999999999999999988 3445544444 5999999999999999975 77899
Q ss_pred EEeCCCCceeeeeccccCC--ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEE
Q 001176 568 EWNESEGAIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 645 (1132)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1132)
+||+..+..+..+.+|... .+.+...++.+.++++|+.|+.|++||..++..+..+..|. ...+..+.+++..++++
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA 438 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence 9999999999999999874 34445567889999999999999999999999999998885 45789999999999999
Q ss_pred EEe--CCCcEEEEEcC
Q 001176 646 VTT--SDNGIKILANS 659 (1132)
Q Consensus 646 ~~~--~dg~i~iw~~~ 659 (1132)
+++ .|+.+++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 998 78999999753
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-32 Score=253.67 Aligned_cols=288 Identities=14% Similarity=0.217 Sum_probs=248.3
Q ss_pred ccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 333 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 333 ~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
|.+..+.|. +.++|.++.|+-||+ +..+++.|.+|++|+...|.++.+ +.+|...|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeeec
Confidence 444566777 899999999999999 577778899999999999998876 77999999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC--CeEEEE
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--GRKQYT 489 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~--~~~~~~ 489 (1132)
+.+.|+..+++|+.|..+.+||+++|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||-++ .++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999999777 6899999999999999998 999999999999999875 467888
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001176 490 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 569 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 569 (1132)
+....+.|.++.+.. ..|++|+.||++|.||++.+...... -+.+|++++|++|++..++++. ++++++.
T Consensus 141 ldea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLL 210 (307)
T ss_pred hhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeec
Confidence 888889999998743 67999999999999999987655433 3568999999999999988876 7889999
Q ss_pred eCCCCceeeeeccccCCce-EEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe
Q 001176 570 NESEGAIKRTYSGFRKRSL-GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 648 (1132)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1132)
|-.+|+++..+++|..... ..++++.....+++|++||.|++||+.....+..+..+.. ..|.+++++|.-..++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEec
Confidence 9999999999999976432 2466777778999999999999999999999999987754 2478999999777777665
Q ss_pred CCCcEEEEE
Q 001176 649 SDNGIKILA 657 (1132)
Q Consensus 649 ~dg~i~iw~ 657 (1132)
.. .+..|-
T Consensus 290 ~~-~~~~~~ 297 (307)
T KOG0316|consen 290 GH-GDLFWY 297 (307)
T ss_pred CC-ceecee
Confidence 44 455554
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.2e-33 Score=288.50 Aligned_cols=294 Identities=17% Similarity=0.271 Sum_probs=252.2
Q ss_pred cccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCC-CccccccceeeeecccccccccccccCCCCcCeE
Q 001176 332 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVN 409 (1132)
Q Consensus 332 ~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 409 (1132)
+|...+.++. |+..|+++.|.|-.-+||++|+.|+.|+||++.. ++++.+ +.+|..+|.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr 262 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR 262 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence 4677888888 9999999999994335999999999999999987 666654 789999999
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE
Q 001176 410 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 410 ~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 489 (1132)
+++|+++|..+.+++.|+.|++||+++|+++... . ....++|+.|.||+.+ .+++|+.|+.|+.||+++++.+++
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f---~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF---H-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEEE---e-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 9999999999999999999999999999877632 2 2457899999999955 788999999999999999999999
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 490 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
+..|-+.|..+.|.+.+ ..+++.+.|+++++|+.+....... ...+.....++..+|++++++.-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~~g--~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEG--RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEccCC--ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 99999999999997754 8999999999999999987766553 3334457789999999999998865 778999
Q ss_pred EeCCCC---ceeeeeccccCCc-eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC-CCCE
Q 001176 569 WNESEG---AIKRTYSGFRKRS-LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSL 643 (1132)
Q Consensus 569 wd~~~~---~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 643 (1132)
+.+... ...+.|.+|.... -..+.|||||.+|++|+.||.+.+||.++-+.+..++.|.. .+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 986532 3445677876432 34589999999999999999999999999999999998844 899999999 6678
Q ss_pred EEEEeCCCcEEEEE
Q 001176 644 LAVTTSDNGIKILA 657 (1132)
Q Consensus 644 l~~~~~dg~i~iw~ 657 (1132)
+|+++.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 50
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-32 Score=274.40 Aligned_cols=294 Identities=16% Similarity=0.276 Sum_probs=234.2
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
++..|.+.|+-+.||++|+|||+++.|.+..+|++.....++...++.+|..+|..+.||||.+ ++++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 3778999999999999999999999999999999987777777789999999999999999999 89999999999999
Q ss_pred ECCCCeEEEEecC-CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 480 DVVAGRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 480 d~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
|+.+|...+.+.. |...+.+++|.|++ ..+++|+.|+++..|
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg--~~~V~Gs~dr~i~~w----------------------------------- 339 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDG--FRFVTGSPDRTIIMW----------------------------------- 339 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCC--ceeEecCCCCcEEEe-----------------------------------
Confidence 9999998766642 33455555554432 445555555555554
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 638 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1132)
|+. |..+..+++-....|.+++.++||+++++.+.|..|++++..+......+..+ .+|++.+.|
T Consensus 340 -----------dlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~iS 404 (519)
T KOG0293|consen 340 -----------DLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFSIS 404 (519)
T ss_pred -----------cCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---CceeEEEEc
Confidence 433 33334444444446888999999999999999999999999876666555433 379999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcc
Q 001176 639 KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS 718 (1132)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1132)
.|++++++.-.+..+++||++.. .+++.+.||...
T Consensus 405 ~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~-------------------------------------------- 439 (519)
T KOG0293|consen 405 KDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQG-------------------------------------------- 439 (519)
T ss_pred CCCcEEEEEcccCeeEEeecchh-hHHHHhhccccc--------------------------------------------
Confidence 99999999999999999999865 666666555321
Q ss_pred cCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEee
Q 001176 719 ISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKW 798 (1132)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~ 798 (1132)
.+++-.+
T Consensus 440 ---------------------------------------------------------------~fiIrSC---------- 446 (519)
T KOG0293|consen 440 ---------------------------------------------------------------HFIIRSC---------- 446 (519)
T ss_pred ---------------------------------------------------------------ceEEEec----------
Confidence 1111111
Q ss_pred ccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCC
Q 001176 799 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP 877 (1132)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~ 877 (1132)
+.+ .+..++|+|+ |++|+||+..+++++.++.||
T Consensus 447 -------------------------------Fgg--------------~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH 481 (519)
T KOG0293|consen 447 -------------------------------FGG--------------GNDKFIASGSEDSKVYIWHRISGKLLAVLSGH 481 (519)
T ss_pred -------------------------------cCC--------------CCcceEEecCCCceEEEEEccCCceeEeecCC
Confidence 111 2567999999 999999999999999999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc
Q 001176 878 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 910 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 910 (1132)
...|+|++|+|.+..++|+|++||+|+||....
T Consensus 482 s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 482 SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999998899999999999999997653
No 51
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.7e-33 Score=301.69 Aligned_cols=247 Identities=17% Similarity=0.336 Sum_probs=228.1
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCC----------------------------ceeeeeeeecccCCEEE
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG----------------------------ELRQHLEIDAHVGGVND 455 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~----------------------------~~~~~~~l~~h~~~v~~ 455 (1132)
....++|..||+|++.||.|..|..|++|.+...+ ......++.||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 34579999999999999999999999999987311 01123458899999999
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001176 456 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 535 (1132)
Q Consensus 456 v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 535 (1132)
+.|+|+.+ +|++|+.|+++++|.+.+..++..++||..||+.+.|+|. |-+++|+|.|++.++|..+...+...+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC--ceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 8999999999999999999999999999999999999875 4999999999999999999999999999
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 615 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1132)
+|.+.|.|+.|+|+..|+++|+. |.++++||+.+|..++.|.||.+ +|.+++|+|+|.+|++|++||.|.+||+.
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 99999999999999999999975 78899999999999999999988 99999999999999999999999999999
Q ss_pred CCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 616 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+++.+..+..| .+.|.++.|+.||..||+|+.|++|++||+...
T Consensus 608 ~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 608 NGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999988 458999999999999999999999999998754
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.2e-33 Score=273.76 Aligned_cols=272 Identities=22% Similarity=0.331 Sum_probs=235.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
...+|+|+.+..+ .+++|..|++|+|||.++.+++.. +.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeec--cceEEE
Confidence 3468999998654 489999999999999998887653 8899999999999 677999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE---EEEecCCCCCeE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVY 498 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~---~~~~~~h~~~v~ 498 (1132)
+|+.|.+|+|||+++++.+. ++-+|...|..+.|+.. +++|++.|.++.+||+..... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999877 67889999999999743 799999999999999987653 356789999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee
Q 001176 499 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 499 ~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
.+.|+. +++++++.|.+|++|++.+.+.+..+.+|...|.|+.+ .|+++++|+. |.+|++||+..|.+++
T Consensus 325 vVdfd~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDFDD----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecccc----ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 998842 79999999999999999999999999999999988876 4678888875 8889999999999999
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeE---------EEEeCCCCCCCcceEEEcCCCCEEEEEeC
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML---------TTVDADGGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
.++||.. -|.++.|. .+.+++|+.||+|++||+..+..- ..+.. +.+.|..+.|. ...+++++.
T Consensus 395 vLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~--hsgRVFrLQFD--~fqIvsssH 467 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE--HSGRVFRLQFD--EFQIISSSH 467 (499)
T ss_pred HHhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhh--ccceeEEEeec--ceEEEeccC
Confidence 9999998 89999996 578999999999999999875422 22222 34478888885 567899999
Q ss_pred CCcEEEEEcCCc
Q 001176 650 DNGIKILANSDG 661 (1132)
Q Consensus 650 dg~i~iw~~~~~ 661 (1132)
|.+|.+||..++
T Consensus 468 ddtILiWdFl~~ 479 (499)
T KOG0281|consen 468 DDTILIWDFLNG 479 (499)
T ss_pred CCeEEEEEcCCC
Confidence 999999999887
No 53
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-28 Score=261.75 Aligned_cols=500 Identities=15% Similarity=0.180 Sum_probs=358.4
Q ss_pred cCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE-EEEecCC-CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC
Q 001176 450 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 527 (1132)
Q Consensus 450 ~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~h-~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~ 527 (1132)
..+|.++||+.+.+ .||.+-.||.|.+|++..+=. ...+.++ ...|.+++|.+ +..|++.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e---~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE---GGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc---CCeEEeecCCceEEEEeccc
Confidence 45799999999998 699999999999999987543 3456665 46799999983 36899999999999999999
Q ss_pred CCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec-cccCCceEEEEEeCCCCEEEEEEcC
Q 001176 528 LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGVVQFDTTRNRFLAAGDE 606 (1132)
Q Consensus 528 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d 606 (1132)
.+....+...++.|.+++.+|.+..++.++. +|.+..++...++...... ....+.+.++.|+|++..+++|+.|
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 9999999999999999999999999999874 6678888887776554332 2223489999999999999999999
Q ss_pred CeEEEEECCCCeeEEEEeC-----CC-CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCC
Q 001176 607 FQIKFWDMDNMNMLTTVDA-----DG-GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPS 680 (1132)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1132)
|.|++||..++..+..... .. ...-|+++.|-.++ .|++|...|+|.+||...+ .+.+....
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-TLiqS~~~---------- 243 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-TLIQSHSC---------- 243 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-chhhhhhh----------
Confidence 9999999999988773321 11 22346677777555 6889999999999998877 33332221
Q ss_pred CCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceE
Q 001176 681 EPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 760 (1132)
Q Consensus 681 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~ 760 (1132)
T Consensus 244 -------------------------------------------------------------------------------- 243 (691)
T KOG2048|consen 244 -------------------------------------------------------------------------------- 243 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCe
Q 001176 761 LRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESA 840 (1132)
Q Consensus 761 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v 840 (1132)
|...|.+++.++++.++++++.|+.+..|...+.... |-. ..... .| ...|
T Consensus 244 -------h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------wv~------~~~r~--~h-~hdv 294 (691)
T KOG2048|consen 244 -------HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------WVI------NSRRD--LH-AHDV 294 (691)
T ss_pred -------hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------eee------ecccc--CC-cccc
Confidence 5667899999999999999999999888865432210 111 11111 25 7789
Q ss_pred eEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEE-EEEeCCCCCeEEEEeCCCcEEEEEcccce------
Q 001176 841 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATF-LAFHPQDNNIIAIGMEDSSVQIYNVRVDE------ 912 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~-l~~sp~~~~~lasg~~dg~v~iwd~~~~~------ 912 (1132)
.+++..++ .+++|+ |.++.+-.....+..........+-.+ +...| .++|..--.+..+.+|.+.+.-
T Consensus 295 rs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~ 370 (691)
T KOG2048|consen 295 RSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYN 370 (691)
T ss_pred eeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccC
Confidence 99999887 777777 888777555432211111100011111 22233 3445445556678888776541
Q ss_pred ---eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-
Q 001176 913 ---VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV- 988 (1132)
Q Consensus 913 ---~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~- 988 (1132)
+++........|.+.+.||+|++++.+.- ...++|.++....++...+....-.. ..++.+.|+-|+..++.
T Consensus 371 ~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~ftid~~k~~~~ 446 (691)
T KOG2048|consen 371 YIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLAL---LDASAISFTIDKNKLFLV 446 (691)
T ss_pred hhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhh---ccceeeEEEecCceEEEE
Confidence 11222223345899999999999997653 45788888764332222222222211 45788899999888777
Q ss_pred E-eCCeEEEEeC---CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccC
Q 001176 989 V-HESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1064 (1132)
Q Consensus 989 ~-~d~~v~vwd~---~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1064 (1132)
+ +...+..++. +.+.+...... +--..|..+..||||++||+.+.+|.|.+|++++++......
T Consensus 447 s~~~~~le~~el~~ps~kel~~~~~~-~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~----------- 514 (691)
T KOG2048|consen 447 SKNIFSLEEFELETPSFKELKSIQSQ-AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV----------- 514 (691)
T ss_pred ecccceeEEEEecCcchhhhhccccc-cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-----------
Confidence 4 5677888877 33344333332 235689999999999999999999999999999987654332
Q ss_pred CCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1065 SNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1065 ~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
.-...+++++++|.....|+.+..|+.+.-+|+..
T Consensus 515 rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 515 RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred ccCcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence 11267899999987888999999999999999943
No 54
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.8e-32 Score=272.90 Aligned_cols=283 Identities=17% Similarity=0.271 Sum_probs=240.1
Q ss_pred ccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeC
Q 001176 769 ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 848 (1132)
Q Consensus 769 ~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~d 848 (1132)
...|..+.|+|+|+.|++++..|.+.+|+... ......+.. | ...|+++.|+++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----------------------fnFEtilQa--H-Ds~Vr~m~ws~~ 149 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----------------------FNFETILQA--H-DSPVRTMKWSHN 149 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce-----------------------eeHHHHhhh--h-cccceeEEEccC
Confidence 45688999999999999999999999996421 111111222 7 999999999999
Q ss_pred CCEEEEee-CCeEEEEECCCCeEEEEeeC-CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeE
Q 001176 849 DSYVMSAS-GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 926 (1132)
Q Consensus 849 g~~la~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 926 (1132)
|.++++|+ +|.|++|+..- ..+..+.+ |...|++++|+| ....+++++.||+|+|||....+...++.+|.-.|.+
T Consensus 150 g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred CCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 99999999 89999999764 34444554 448899999999 6677889999999999999988888889999999999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCC-CCce
Q 001176 927 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK-LECS 1004 (1132)
Q Consensus 927 l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~-~~~~ 1004 (1132)
++|+|....+|++|.|..|++||.+++. ++..+.+|. ..|..+.|++++.+|++ +.|..++++|+. .+.+
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 9999999999999999999999999988 455566666 67999999999999999 789999999994 5555
Q ss_pred eecCCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeE
Q 001176 1005 RSWSPKDALPAPISSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1083 (1132)
Q Consensus 1005 ~~~~~~~~h~~~i~~i~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 1083 (1132)
..+ .+|...+++++|+| ...+|.+|+.||.|..|.+...+.+..+. .+|...|.+++|+| =|.+|
T Consensus 300 ~~~---r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~----------~AHd~~iwsl~~hP-lGhil 365 (464)
T KOG0284|consen 300 FTY---RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP----------PAHDGEIWSLAYHP-LGHIL 365 (464)
T ss_pred HHh---hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC----------cccccceeeeeccc-cceeE
Confidence 444 67799999999999 46688999999999999999666554443 48899999999999 88999
Q ss_pred EEEeCCCcEEEEecCCCc
Q 001176 1084 ALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1084 ~s~~~Dg~i~vW~~~~~~ 1101 (1132)
++|+.|.++++|.-....
T Consensus 366 ~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 366 ATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred eecCCCcceeeeccCCCC
Confidence 999999999999887654
No 55
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=100.00 E-value=4.5e-30 Score=270.34 Aligned_cols=611 Identities=15% Similarity=0.180 Sum_probs=353.0
Q ss_pred ccCCCCcCeEEEEEcC-CCCeEEEEeCCCeEEEEEecCCCc--e-eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc
Q 001176 400 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE--L-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 475 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~sp-dg~~las~~~dg~i~iwd~~~~~~--~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~ 475 (1132)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..+-. + .....+.+..-.|.++.|+|.... +++++ ..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s~-a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILASG-AHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEec-cCce
Confidence 4788999999999999 677999999999999999984422 1 111223334457899999998775 45554 5889
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce-EEecCCCC-eEEEEEEcCCCCEE
Q 001176 476 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDAPGN-WCTMMAYSADGTRL 553 (1132)
Q Consensus 476 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~-~v~~~~~s~~~~~l 553 (1132)
++|||+.+++.+..+.+|...|.+..|+. ||.+|++.+.|+.|+|||.+..... ....+|++ .-..+.|.-+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Wse--DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSE--DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccccc--CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 99999999999999999999999999965 6699999999999999999876544 34455554 44567787776678
Q ss_pred EEEecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEE----------
Q 001176 554 FSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLT---------- 621 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~---------- 621 (1132)
++.+.+...-..|++||.+. +..+.++.-.....+..--|.||.++++.+| .+.++..+.+...++..
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~ 309 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEE 309 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchh
Confidence 87776655667899999875 4455655544443566667899988777655 77888888775433110
Q ss_pred ----------------------EEe--------------------CC---------------------CCCCCcceEEEc
Q 001176 622 ----------------------TVD--------------------AD---------------------GGLPASPRLRFN 638 (1132)
Q Consensus 622 ----------------------~~~--------------------~~---------------------~~~~~v~~~~~s 638 (1132)
.+. .| +....|..+...
T Consensus 310 ~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~ 389 (1012)
T KOG1445|consen 310 QTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLA 389 (1012)
T ss_pred hhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccC
Confidence 000 00 000011112221
Q ss_pred CCC-----------C--EEEEEeCCCcEEEEEcC-------------Cc----c--------eeeeecc-----------
Q 001176 639 KEG-----------S--LLAVTTSDNGIKILANS-------------DG----V--------RLLRMLE----------- 669 (1132)
Q Consensus 639 ~~~-----------~--~l~~~~~dg~i~iw~~~-------------~~----~--------~~~~~~~----------- 669 (1132)
|.. . ..+.. -..+.+.-.. +. + ...+.+.
T Consensus 390 Pa~r~h~~~pp~~~P~p~~a~t--~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~ 467 (1012)
T KOG1445|consen 390 PAQRSHSPPPPEPVPTPKVAQT--PSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVH 467 (1012)
T ss_pred chhccCCCCCCCCCCCcccccC--CCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCcc
Confidence 100 0 00000 0000111000 00 0 0000000
Q ss_pred ----------ccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCC---CcccCccCcCCcccccccccc
Q 001176 670 ----------GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP---AVSISSLGTIDGSRLVDVKPR 736 (1132)
Q Consensus 670 ----------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 736 (1132)
+.+..+......++.-..|.-.++ ...++..-...|...+.... ......+.....+.....-.-
T Consensus 468 ~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~pl--t~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~ 545 (1012)
T KOG1445|consen 468 TPNADADSTQGNSSPISTISPEPVTIVKPASTPL--TDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRP 545 (1012)
T ss_pred CCCcccccccCCCCCccccCCCcccccCCCCccc--ccccccccccCccccccCCCCCCcccCCCccccccccccccccc
Confidence 000000000000000000000000 00000000000110000000 000001111111111100000
Q ss_pred cccccCceeeeecCCCCCCCc------ce--EEecCCcccccceEEEEEecCCceEEe--ecccceeEEEeeccccCCCC
Q 001176 737 VAEDVDKIKSWRIPDISDPSQ------IK--ALRLPDSIAASKVVRLIYTNSGLSLLA--LASNAVHKLWKWQRTERNPS 806 (1132)
Q Consensus 737 ~~~~~~~v~~w~~~~~~~~~~------~~--~~~~~~~~~~~~i~~~~~s~~g~~l~~--~~~dg~i~vw~~~~~~~~~~ 806 (1132)
...--|.+.-|.-..+....+ .+ ..++|+ .+-.|+.+..++++ .+..|.|.||++......++
T Consensus 546 ~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~Pg-------EsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPD 618 (1012)
T KOG1445|consen 546 KSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPG-------ESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPD 618 (1012)
T ss_pred cceeeccchheeeccCccccchhhhhhhhcccccCCC-------ccCceeeccceEEEEecCCCceEEEEEcCCCCCCCc
Confidence 000002222222111111111 00 011111 12234445555544 56689999999876555444
Q ss_pred CccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee-CCCEEEEee-CCeEEEEECCCC-------eEEEEeeCC
Q 001176 807 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLFNMMTF-------KVMTMFMSP 877 (1132)
Q Consensus 807 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~-dg~~la~~s-dg~i~vwd~~~~-------~~~~~~~~~ 877 (1132)
+-. .+... ...|+.+.|.| |...||++. ||.|++|.+..+ ..-..+..|
T Consensus 619 gv~---------------------p~l~N-gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h 676 (1012)
T KOG1445|consen 619 GVM---------------------PGLFN-GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH 676 (1012)
T ss_pred ccc---------------------ccccc-CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc
Confidence 432 22222 56789999999 778888888 899999998754 344667889
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccccc
Q 001176 878 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 957 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~ 957 (1132)
...|+++.|+|-..+.|++++.|-+|++||+.+++...++.+|.+.|.+++|||||+.+||.+.||+|++|+..+++.
T Consensus 677 ~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~-- 754 (1012)
T KOG1445|consen 677 GEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ-- 754 (1012)
T ss_pred cceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC--
Confidence 999999999997788999999999999999999999999999999999999999999999999999999999987652
Q ss_pred ceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCC-
Q 001176 958 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG- 1036 (1132)
Q Consensus 958 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg- 1036 (1132)
.+..-.+.. ...-..|.|.-||+++++.+.|.
T Consensus 755 --pv~Eg~gpv---------------------------------------------gtRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 755 --PVYEGKGPV---------------------------------------------GTRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred --ccccCCCCc---------------------------------------------cCcceeEEEEecCcEEEEeccccc
Confidence 121111110 11222344555666665554443
Q ss_pred ---cEEEEeCCCcc--eecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccccC
Q 001176 1037 ---AIGVFDAETLR--FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1106 (1132)
Q Consensus 1037 ---~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~~ 1106 (1132)
.|.+||..+.. .+...... .+ -.++--.|.++.+-++++|-.|..|.+|++...++.+-.
T Consensus 788 SeRQv~~Y~Aq~l~~~pl~t~~lD--------va--ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lp 852 (1012)
T KOG1445|consen 788 SERQVQMYDAQTLDLRPLYTQVLD--------VA--PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLP 852 (1012)
T ss_pred chhhhhhhhhhhccCCcceeeeec--------cc--CccccccccCCCceEEEecCCCceEEEEEecCCCceeee
Confidence 36666665433 12111100 00 111122344545678889999999999999888865543
No 56
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.3e-31 Score=300.65 Aligned_cols=290 Identities=26% Similarity=0.436 Sum_probs=246.9
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
+...|.++.|+++|+.+++++.++.+++|+...... .+.. .+.+ | ...|.+++|+|
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------~~~~-~l~~--h-~~~v~~~~fs~ 213 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------NLLR-ELSG--H-TRGVSDVAFSP 213 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------hhhc-cccc--c-ccceeeeEECC
Confidence 467889999999999999999999999997632110 0111 1233 7 88999999999
Q ss_pred CCCEEEEee-CCeEEEEEC-CCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCee
Q 001176 848 NDSYVMSAS-GGKVSLFNM-MTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 925 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 925 (1132)
|++++++++ |++|++||+ ..+..++++.+|...|++++|+| .++++++|+.|++|+|||+.+++++..+.+|.+.|+
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999 899999999 66799999999999999999999 779999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeC-CCCc
Q 001176 926 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLEC 1003 (1132)
Q Consensus 926 ~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~-~~~~ 1003 (1132)
+++|++++++|++++.|+.|++||+.++... +.....++.... .++.++|+|++++++++ .|+.+++||+ .+.+
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS 368 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcc
Confidence 9999999999999999999999999998743 344555555444 68999999999999995 6789999999 6777
Q ss_pred eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCC-CCCcEEEEeCCCCCCe
Q 001176 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSN-TAHPLVIAPHPSEPNQ 1082 (1132)
Q Consensus 1004 ~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~ 1082 (1132)
...+.....-...+.+..++++++++++|+.|+.|++||+.++..+..+. +| ...+..+.++| ..++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-----------~h~~~~~~~~~~~~-~~~~ 436 (456)
T KOG0266|consen 369 VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-----------GHSKAAVSDLSSHP-TENL 436 (456)
T ss_pred eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-----------CCCCCceeccccCC-CcCe
Confidence 77765543111255666678899999999999999999999988887775 66 67888999999 8889
Q ss_pred EEEEe--CCCcEEEEecC
Q 001176 1083 IALGM--SDGAVHVVEPS 1098 (1132)
Q Consensus 1083 l~s~~--~Dg~i~vW~~~ 1098 (1132)
+++++ .|+.+++|...
T Consensus 437 ~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 437 IASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeecCcCCCceEEEecCC
Confidence 99988 89999999864
No 57
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2e-30 Score=247.04 Aligned_cols=292 Identities=17% Similarity=0.236 Sum_probs=237.1
Q ss_pred ccccceEEEEEecC-CceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEE
Q 001176 767 IAASKVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 845 (1132)
Q Consensus 767 ~~~~~i~~~~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 845 (1132)
+|.+++..++++|. |..|++++.|..|++|+... ..+-..... +.+ .| ...|+++||
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-------------------~~s~~ck~v-ld~-~h-krsVRsvAw 69 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-------------------GDSWTCKTV-LDD-GH-KRSVRSVAW 69 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-------------------CCcEEEEEe-ccc-cc-hheeeeeee
Confidence 37889999999998 88999999999999998642 011111111 211 37 899999999
Q ss_pred eeCCCEEEEee-CCeEEEEECCC--CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc---eeeeeecc
Q 001176 846 SKNDSYVMSAS-GGKVSLFNMMT--FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKG 919 (1132)
Q Consensus 846 s~dg~~la~~s-dg~i~vwd~~~--~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~ 919 (1132)
+|.|++||+|+ |.++.||.-.. .+++.++.||..+|.|++|++ +|++||+++.|++|.||.+..+ ++...++.
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 99999998664 578999999999999999999 9999999999999999999844 57888999
Q ss_pred ccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEe
Q 001176 920 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYD 998 (1132)
Q Consensus 920 h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd 998 (1132)
|...|..+.|+|...+|+|+|-|.+|++|+-.... .-.+.+.+.+|. ..|.+++|++.|..|++ +.|+++++|.
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd--dW~c~~tl~g~~---~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD--DWECVQTLDGHE---NTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCC--CeeEEEEecCcc---ceEEEEEecCCCceEEEecCCcceEeee
Confidence 99999999999999999999999999999877322 244677777876 57899999999999888 5789999998
Q ss_pred CCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCC
Q 001176 999 SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS 1078 (1132)
Q Consensus 999 ~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 1078 (1132)
.-.. + ...|+.++..++|. ...||+++.|+.|++|.-..+-.-..+. +.......|...|-+++|.|.
T Consensus 224 ~~~~----~--~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~----l~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 224 LYTD----L--SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWN----LLAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred eccC----c--chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHH----HHHhhhcccccccceEEEcCC
Confidence 6311 1 13357899999998 4579999999999999877431111111 112234588889999999996
Q ss_pred CCCeEEEEeCCCcEEEEecC
Q 001176 1079 EPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1079 ~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
..++|++|+.||.|++|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 68899999999999999875
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.5e-30 Score=283.91 Aligned_cols=285 Identities=25% Similarity=0.408 Sum_probs=252.5
Q ss_pred eec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC
Q 001176 339 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 339 ~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
++. |.+.|++++|+|+++ ++++|+.||.|++|++.+++.... +..|...+.++.|+|++
T Consensus 4 ~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~ 63 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADG 63 (289)
T ss_pred HhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCC
Confidence 444 889999999999998 688899999999999988764332 45688899999999999
Q ss_pred CeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCe
Q 001176 418 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 497 (1132)
Q Consensus 418 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v 497 (1132)
+++++++.||.|++|++.+++... .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...+
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 138 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV 138 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcE
Confidence 999999999999999999876554 5668888999999999977 78888889999999999999999999999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCcee
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 577 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1132)
.+++|++. +.++++++.|+.|++||++..+....+..+...+.+++|+|+++.+++++. ++.+++||+.+++.+
T Consensus 139 ~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~ 212 (289)
T cd00200 139 NSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCL 212 (289)
T ss_pred EEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCcee
Confidence 99999886 378888888999999999988888888888889999999999999998874 778999999999988
Q ss_pred eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 578 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
..+..+.. .+.++.|+|++.++++++.+|.|++|++.+++....+..+. ..+.+++|++++.+|++++.||.+++|+
T Consensus 213 ~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 213 GTLRGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cchhhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88877766 89999999998888888889999999999988888887554 3799999999999999999999999995
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=1.4e-31 Score=275.14 Aligned_cols=297 Identities=16% Similarity=0.239 Sum_probs=250.0
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 562 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1132)
.+.++++.+|...|+++.|.|. .+.+|++++.|+.|++|++.. ++++..+.+|..+|..++|+++|..+++++.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf---- 278 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF---- 278 (503)
T ss_pred HhheeeccCCccccchhhhccc-eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec----
Confidence 3456788999999999999884 348999999999999999987 6778899999999999999999999999997
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCC
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 641 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1132)
|+.|++||+++|+++..|.... .+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..| ...|..+.|-++|
T Consensus 279 D~~lKlwDtETG~~~~~f~~~~--~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h--Lg~i~~i~F~~~g 354 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFHLDK--VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH--LGAILDITFVDEG 354 (503)
T ss_pred ceeeeeeccccceEEEEEecCC--CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh--hhheeeeEEccCC
Confidence 7889999999999999987654 78999999999 88899999999999999999999888876 4489999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCc
Q 001176 642 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 721 (1132)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1132)
+.+++.++|++++||+...+ ..++....+
T Consensus 355 ~rFissSDdks~riWe~~~~-v~ik~i~~~-------------------------------------------------- 383 (503)
T KOG0282|consen 355 RRFISSSDDKSVRIWENRIP-VPIKNIADP-------------------------------------------------- 383 (503)
T ss_pred ceEeeeccCccEEEEEcCCC-ccchhhcch--------------------------------------------------
Confidence 99999999999999998766 222111100
Q ss_pred cCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccc
Q 001176 722 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 801 (1132)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~ 801 (1132)
+.-...++..+|++..+++-+.|+.+.+|.+...
T Consensus 384 ----------------------------------------------~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~ 417 (503)
T KOG0282|consen 384 ----------------------------------------------EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP 417 (503)
T ss_pred ----------------------------------------------hhccCcceecCCCCCeehhhccCceEEEEecccc
Confidence 1223567889999999999999999999875311
Q ss_pred cCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCC
Q 001176 802 ERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA 880 (1132)
Q Consensus 802 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~ 880 (1132)
+ ..-....+.++.- .+.-..+.|||||.+|++|+ ||.+.+||..+-+++..+++|...
T Consensus 418 -~-------------------r~nkkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ 476 (503)
T KOG0282|consen 418 -F-------------------RLNKKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQP 476 (503)
T ss_pred -c-------------------ccCHhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcc
Confidence 0 0011112333222 45567889999999999998 999999999999999999999999
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEE
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYN 907 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd 907 (1132)
++.+.|+|.....+|+++.||.|++||
T Consensus 477 ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 477 CIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEEecCCCcceeEecccCceeEecC
Confidence 999999998889999999999999996
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.4e-31 Score=256.19 Aligned_cols=292 Identities=19% Similarity=0.285 Sum_probs=247.1
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
....+.|..|+|||++|++++.||.|.+|+..+++...+-+..+.. ...+ + ..+|.|++||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd---------~fMM--------m-d~aVlci~FSR 273 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD---------NFMM--------M-DDAVLCISFSR 273 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc---------ceee--------c-ccceEEEeecc
Confidence 4566789999999999999999999999998776654443332221 1111 3 77899999999
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEEEee-CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCee
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 925 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 925 (1132)
|...+|+|+ ||+|++|.+.+|.+++.|. .|...|+|+.||. |+..+.+++.|.+++|.-+.+|+++..++||.+-|+
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 999999999 9999999999999999997 7999999999999 888888999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCC-cEEEEE-eCCeEEEEeCCCCc
Q 001176 926 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLVV-HESQISVYDSKLEC 1003 (1132)
Q Consensus 926 ~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~-~d~~v~vwd~~~~~ 1003 (1132)
...|++||..+++++.||+|++|+.++.++....... +.. .+|..+..-|-+ ..++++ ..++|.+-++.++.
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~---~~d---~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL---GTD---YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC---CCc---ccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence 9999999999999999999999999998865432111 111 466777666644 345554 67889999999999
Q ss_pred eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeE
Q 001176 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1083 (1132)
Q Consensus 1004 ~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 1083 (1132)
++.+..+.-..+..-+++.||.|.++++.++|+.++-|.+.+|.+-..+. .|...|+.++-+| ..+.|
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~-----------VhEkdvIGl~HHP-HqNll 494 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP-----------VHEKDVIGLTHHP-HQNLL 494 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee-----------cccccccccccCc-ccchh
Confidence 99988776556777888999999999999999999999999998876654 6678888999999 77899
Q ss_pred EEEeCCCcEEEEe
Q 001176 1084 ALGMSDGAVHVVE 1096 (1132)
Q Consensus 1084 ~s~~~Dg~i~vW~ 1096 (1132)
++-+.||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999995
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=8.6e-29 Score=306.26 Aligned_cols=291 Identities=14% Similarity=0.164 Sum_probs=237.3
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCeE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 420 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 420 (1132)
|...|++++|+|+|+ ++|+|+.|+.|+||+......... . .......+ .+...|.+++|+| ++.+|
T Consensus 482 ~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~-~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 482 SSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVEL-ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred CCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEe-cccCceeeEEeccCCCCEE
Confidence 889999999999998 799999999999999864211000 0 00000012 2346899999988 57899
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec-CCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 499 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 499 (1132)
|+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..|.+
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 999999999999999876554 5789999999999997 667 8999999999999999999998888755 67899
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-----
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----- 573 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----- 573 (1132)
+.|.+. ++.++++|+.||.|++||++... ....+.+|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 623 v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcccc
Confidence 998643 46899999999999999998765 455777899999999997 7788988875 78899999974
Q ss_pred -CceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe-----------CCCCCCCcceEEEcCCC
Q 001176 574 -GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-----------ADGGLPASPRLRFNKEG 641 (1132)
Q Consensus 574 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~~~~s~~~ 641 (1132)
...+..+.+|.. .+.+++|++++.+|++|+.|+.|++|+......+..+. ...+...|.+++|++++
T Consensus 697 ~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 697 NETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred CCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 356788888876 78899999999999999999999999987665443321 11223468999999999
Q ss_pred CEEEEEeCCCcEEEEEc
Q 001176 642 SLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 642 ~~l~~~~~dg~i~iw~~ 658 (1132)
..|++|+.||.|++|++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999985
No 62
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=4.5e-31 Score=258.79 Aligned_cols=232 Identities=16% Similarity=0.310 Sum_probs=205.9
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
....|.|+.+ |...+++|..|.+|+|||.++-.+++ .+.||++.|.|+.|. .+ .+++|+.|.+|+|||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 3457999999 77889999999999999999877665 688999999999984 45 899999999999999999
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
|+++.++-+|...|..+.|+. .++++++.|.++.+||+...... ..+.+|...|+.+.|+. +++++++
T Consensus 267 ge~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsAS--- 337 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS--- 337 (499)
T ss_pred CchhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEec---
Confidence 999999999999999999853 69999999999999999887643 36778888999998854 5999886
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCC
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 640 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1132)
+|.+|++|+..+++.++++.+|.. .|.|+.+. ++++++|+.|.+|++||+..|.++..+.+|.. -|.++.|.
T Consensus 338 -gDRTikvW~~st~efvRtl~gHkR-GIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd-- 409 (499)
T KOG0281|consen 338 -GDRTIKVWSTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD-- 409 (499)
T ss_pred -CCceEEEEeccceeeehhhhcccc-cceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec--
Confidence 488999999999999999999988 67777664 78899999999999999999999999998865 78999996
Q ss_pred CCEEEEEeCCCcEEEEEcCCc
Q 001176 641 GSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+.+++|+-||+|++||+..+
T Consensus 410 ~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CceeeeccccceEEEEecccc
Confidence 668999999999999999876
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.6e-30 Score=243.98 Aligned_cols=282 Identities=17% Similarity=0.285 Sum_probs=251.5
Q ss_pred CCCCeeEEEEcc---CCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCC
Q 001176 342 QGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 418 (1132)
Q Consensus 342 h~~~V~~~~~sp---dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 418 (1132)
|+.+|..++||| +| ++|++++.|+.-.+-+-++|..+.+ +.||++.|++..++.+..
T Consensus 13 htrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l~~na~ 72 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATLNKNAT 72 (334)
T ss_pred CCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeecCchhh
Confidence 889999999996 67 5899999999999999999988875 789999999999999999
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-EEEEecCCCCCe
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEAPV 497 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~h~~~v 497 (1132)
+.|+++.|-+-+|||.-+|..+. .+ .|..-|.+++|+.|.+ +|+||+.++.++|+|++..+ +...+.+|.+.|
T Consensus 73 ~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ghtg~I 146 (334)
T KOG0278|consen 73 RAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI 146 (334)
T ss_pred hhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCCCCcc
Confidence 99999999999999999998776 33 5888999999999999 79999999999999998754 467889999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCcee
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 577 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1132)
..+.|.... +.+++.+.|++||+||.+++.....+.. ...|+++-++++|++|.++- .+.|.+||..+..++
T Consensus 147 r~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 147 RTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFGLL 218 (334)
T ss_pred eeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-----CceeEEeccccccce
Confidence 999997654 7888989999999999999988887764 45789999999999998774 455999999999999
Q ss_pred eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEE-eCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001176 578 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 656 (1132)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1132)
+.++... .|.+.+.+|+...+++|++|..++.||..+++.+..+ ++| .++|.|+.|+|||...++|+.||+|++|
T Consensus 219 Ks~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 219 KSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred eeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCCCceEEEE
Confidence 9888765 5888999999999999999999999999999999886 444 5599999999999999999999999999
Q ss_pred EcCCc
Q 001176 657 ANSDG 661 (1132)
Q Consensus 657 ~~~~~ 661 (1132)
....+
T Consensus 295 Qt~~~ 299 (334)
T KOG0278|consen 295 QTTPG 299 (334)
T ss_pred EecCC
Confidence 98766
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2e-28 Score=268.88 Aligned_cols=247 Identities=23% Similarity=0.407 Sum_probs=220.6
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|.++|.+++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+|+++ .+++++.||.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876444 5678999999999999997 799999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+.+++.+..+..|...+.++.|++. +.++++++.|+.|++||+++.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9998888899999999999999876 478888888999999999988888888888889999999999988888753
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCC
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 640 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1132)
++.|++||+++++.+..+..+.. .+.++.|+|+++.+++++.++.|++||+.+++.+..+..+.. .+.+++|+++
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~ 230 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPD 230 (289)
T ss_pred --CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcCC
Confidence 67899999999998888887766 799999999999999999999999999999888888765543 7999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCc
Q 001176 641 GSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+.++++++.+|.|++|++.++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 888888888999999998765
No 65
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.3e-29 Score=234.21 Aligned_cols=247 Identities=18% Similarity=0.271 Sum_probs=219.0
Q ss_pred cccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 399 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 399 ~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
..+.+|+++|..+.|+-||+|.++++.|.+|++|+...+.+++ +..+|...|.+++.+.|+. .+++|+.|+.+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3478899999999999999999999999999999999998777 7889999999999999998 7999999999999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
||+.+|+.++.|++|.+.|+.+.|+... ..+++|+.|.++++||-++.. ++..+......|.++..+ +..++++
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 9999999999999999999999997654 899999999999999987654 455666666778888765 4567777
Q ss_pred ecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 557 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
+. ||+++.||++.|+....+-++ +|++++|+++++..++++-|+++++.|-.+|+.+..+.+|....--...+
T Consensus 162 S~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 162 SV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred cc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 64 888999999999987777665 79999999999999999999999999999999999999887654445677
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
++.....+++|+.||.|.+||+.++
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred ecccceeEEeccCCceEEEEEeccc
Confidence 7888889999999999999999887
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.3e-29 Score=249.74 Aligned_cols=294 Identities=18% Similarity=0.325 Sum_probs=244.3
Q ss_pred ccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcC
Q 001176 328 SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 407 (1132)
Q Consensus 328 ~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 407 (1132)
.....+.++...+.|.+.|.++... ++ .+.+|++||.++|||........ +.||.++
T Consensus 90 v~~~~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~Gk~~~~--------------------~~Ght~~ 146 (423)
T KOG0313|consen 90 VEAITAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKGKSIKT--------------------IVGHTGP 146 (423)
T ss_pred EEecCCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCCceEEE--------------------EecCCcc
Confidence 3344667777888899999999999 44 58999999999999987543322 6789999
Q ss_pred eEEEEEcCCC---CeEEEEeCCCeEEEEEecCCCce-eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 408 VNRCVWGPDG---LMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 408 V~~v~~spdg---~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
|.+++|--.. ..+++++.|.++++|.++.++.. .......||...|.+++..++|. ++++|+.|.+|.||+..+
T Consensus 147 ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~ 224 (423)
T KOG0313|consen 147 IKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVET 224 (423)
T ss_pred eeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCC
Confidence 9988885433 36999999999999999887643 22223459999999999999999 899999999999999321
Q ss_pred -------------------------CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001176 484 -------------------------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG 538 (1132)
Q Consensus 484 -------------------------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 538 (1132)
+.++-++.||..+|.++.|.+. ..+++++.|.+|+.||+.+++....+.. .
T Consensus 225 ~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~-~ 300 (423)
T KOG0313|consen 225 DEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTT-N 300 (423)
T ss_pred CccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeec-C
Confidence 2245678899999999999863 6899999999999999999988877664 4
Q ss_pred CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc---eeeeeccccCCceEEEEEeCCCC-EEEEEEcCCeEEEEEC
Q 001176 539 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 539 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~ 614 (1132)
..+.++.++|..++|++++. +..+++||.+++. ...+|.+|.. .|.++.|+|... +|++|+.|+++++||+
T Consensus 301 ksl~~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 301 KSLNCISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred cceeEeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 57899999999999999886 7789999998754 4567889988 999999999774 5677999999999999
Q ss_pred CCCe-eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 615 DNMN-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 615 ~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
++.+ ++..+..|.. .|.++.|+. +..+++|+.|.+|+++.-
T Consensus 376 RS~k~plydI~~h~D--Kvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 376 RSTKAPLYDIAGHND--KVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ccCCCcceeeccCCc--eEEEEeccC-CceEEeccCcceEEEecc
Confidence 9877 8888887754 899999974 568999999999999864
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.2e-30 Score=258.80 Aligned_cols=295 Identities=17% Similarity=0.228 Sum_probs=254.8
Q ss_pred cCCcccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcC
Q 001176 329 QDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 407 (1132)
Q Consensus 329 ~d~~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 407 (1132)
.+..|..+...++ |.++|..+.|-++.. .|++|+.|..|++|++..++.-.. ..+.|..++
T Consensus 160 ~~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~ 221 (459)
T KOG0288|consen 160 EDTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGN 221 (459)
T ss_pred hcccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCC
Confidence 3567777788888 999999999999976 599999999999999987763211 126678889
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE
Q 001176 408 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 408 V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~ 487 (1132)
|+.+.|.++++.+++++.|+.+++|+++..+... +|.||++.|+++.|..... .+++|+.|.+|++||+....+.
T Consensus 222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred cceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhhee
Confidence 9999999999999999999999999999977655 7889999999999988776 5999999999999999999888
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
+++- ....+..|+.. ...+++|-.|+.||+||.++.........++ .|+++..+++|..+++++. |.++.
T Consensus 297 kt~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~ 366 (459)
T KOG0288|consen 297 KTVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLK 366 (459)
T ss_pred cccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCcee
Confidence 7764 23445666654 2679999999999999999999988888766 9999999999999999975 77899
Q ss_pred EEeCCCCceeeeecccc---CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE
Q 001176 568 EWNESEGAIKRTYSGFR---KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 644 (1132)
Q Consensus 568 ~wd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1132)
+.|+++.+....+.... ....+.+.|||++.|+++||.||.|+||++.++++...+........|++++|+|.|..|
T Consensus 367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGL 446 (459)
T ss_pred eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchh
Confidence 99999988887776432 225778999999999999999999999999999999999877665579999999999999
Q ss_pred EEEeCCCcEEEE
Q 001176 645 AVTTSDNGIKIL 656 (1132)
Q Consensus 645 ~~~~~dg~i~iw 656 (1132)
++++.++.+.+|
T Consensus 447 lsadk~~~v~lW 458 (459)
T KOG0288|consen 447 LSADKQKAVTLW 458 (459)
T ss_pred hcccCCcceEec
Confidence 999999999999
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=6.9e-28 Score=298.22 Aligned_cols=271 Identities=14% Similarity=0.195 Sum_probs=217.6
Q ss_pred CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCC----Cce
Q 001176 365 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT----GEL 440 (1132)
Q Consensus 365 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~----~~~ 440 (1132)
+|.+++|+..+.+.... .....+..|.+.|.+++|+|+|++||+|+.|+.|+||+.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~--------------~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKAD--------------LKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEe--------------eccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 57788888775443211 001114459999999999999999999999999999997642 111
Q ss_pred e-eeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCe
Q 001176 441 R-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 519 (1132)
Q Consensus 441 ~-~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~ 519 (1132)
. ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|...|++++|+|. ++.+|++|+.|++
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 111233 3568999999986433 7999999999999999999999999999999999999864 3479999999999
Q ss_pred EEEEEcCCCCceEEecCCCCeEEEEEEc-CCCCEEEEEecCCCCCCeEEEEeCCCCc-eeeeeccccCCceEEEEEeCCC
Q 001176 520 IKAWLYDYLGSRVDYDAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTR 597 (1132)
Q Consensus 520 i~~wd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 597 (1132)
|++||++++.....+..+ ..+.++.|+ ++|.++++++. ++.|++||+++++ .+..+.+|.. .|.++.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988777766644 578899995 57899999875 7889999998765 4667778776 89999997 67
Q ss_pred CEEEEEEcCCeEEEEECCCC------eeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 598 NRFLAAGDEFQIKFWDMDNM------NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.++++++.|+.|++||+..+ ..+..+..|.. .+.+++|++++.+|++|+.|+.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN--VKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 56667776643 7889999999999999999999999997654
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=7.3e-29 Score=281.16 Aligned_cols=306 Identities=17% Similarity=0.260 Sum_probs=252.7
Q ss_pred CCCCeeEEEEccCCCeEEEEEc--CCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCe
Q 001176 342 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 419 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 419 (1132)
+...|.+++.+|||. .+|||+ .|+.++||+.+.--.. ...++.. .+........|.+.|+|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 456799999999998 599999 9999999997642110 0111111 23333346679999999999999999
Q ss_pred EEEEeCCCeEEEEEecC----------C-----CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001176 420 LGVAFSKHIVHLYTYNP----------T-----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 484 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~----------~-----~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~ 484 (1132)
||+|++|+.|.||.... | +..+....+.+|...|.+++|+|++. ++++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999883 0 12345567899999999999999999 9999999999999999999
Q ss_pred eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCeEEEEEEcCCCCEEEEEec
Q 001176 485 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 485 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
+.+.++++|...|-.+.|.|.+ +++++-+.|++|++|+..+-+....+..+ ...+..+.|||||++|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999999999999998866 99999999999999997765555554433 336889999999999998876
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCC--------C-----C----EEEEEEcCCeEEEEECCCCeeEE
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--------R-----N----RFLAAGDEFQIKFWDMDNMNMLT 621 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--------~-----~----~l~~~~~dg~i~iwd~~~~~~~~ 621 (1132)
-+.+...+.|.+-.+.+.-..+-||.. ++.++.|+|. | + .+++|+.|+.|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 666778899999888888889999998 9999999982 1 1 46678999999999998888776
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 622 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+..-.. ..|..++|+|||..|+.++.||+|.++.++..
T Consensus 319 vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 6643332 37999999999999999999999999998764
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=7.6e-30 Score=239.41 Aligned_cols=298 Identities=17% Similarity=0.228 Sum_probs=252.6
Q ss_pred cccccceEEEEEe---cCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE
Q 001176 766 SIAASKVVRLIYT---NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 842 (1132)
Q Consensus 766 ~~~~~~i~~~~~s---~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~ 842 (1132)
++|..+|..++|+ |+|-+|++++.||.-.+ -+-++|.-+.. +.+ | .+.|+.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pml----------------------r~g~tgdwigt-feg--h-kgavw~ 64 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPML----------------------RNGDTGDWIGT-FEG--H-KGAVWS 64 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchh----------------------ccCCCCCcEEe-eec--c-Ccceee
Confidence 5689999999997 58999999999875433 23445544433 444 7 999999
Q ss_pred EEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce-eeeeeccc
Q 001176 843 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTKLKGH 920 (1132)
Q Consensus 843 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h 920 (1132)
.++..+....|+++ |-+-++||.-+|..+..|. |..-|.+++|+. |.++|++|+.+..+||||++.-+ +...+.+|
T Consensus 65 ~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~gh 142 (334)
T KOG0278|consen 65 ATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH 142 (334)
T ss_pred eecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCC
Confidence 99999999999998 8999999999999999988 888899999999 89999999999999999998653 55678999
Q ss_pred cCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC-
Q 001176 921 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS- 999 (1132)
Q Consensus 921 ~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~- 999 (1132)
.+.|..+.|-...+.+++++.|++||+||..++......... .+|+++..++||++|.++..+.|.+||.
T Consensus 143 tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~---------s~VtSlEvs~dG~ilTia~gssV~Fwdak 213 (334)
T KOG0278|consen 143 TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN---------SPVTSLEVSQDGRILTIAYGSSVKFWDAK 213 (334)
T ss_pred CCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC---------CCCcceeeccCCCEEEEecCceeEEeccc
Confidence 999999999988899999999999999999998854432221 4689999999999999999999999999
Q ss_pred CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCC
Q 001176 1000 KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSE 1079 (1132)
Q Consensus 1000 ~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 1079 (1132)
..+.++.+.. ...|.+..++|+...+++|++|+.++.||+.+|+.+..+. .+|...|.|+.|+| |
T Consensus 214 sf~~lKs~k~----P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n----------kgh~gpVhcVrFSP-d 278 (334)
T KOG0278|consen 214 SFGLLKSYKM----PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN----------KGHFGPVHCVRFSP-D 278 (334)
T ss_pred cccceeeccC----ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc----------cCCCCceEEEEECC-C
Confidence 7777777654 5679999999999999999999999999999999987642 38889999999999 9
Q ss_pred CCeEEEEeCCCcEEEEecCCCc--ccccCCCCCCCCCC
Q 001176 1080 PNQIALGMSDGAVHVVEPSDAE--LKWGGTPSQDNGPL 1115 (1132)
Q Consensus 1080 ~~~l~s~~~Dg~i~vW~~~~~~--~~~~~~~~~~~~~~ 1115 (1132)
|...++|+.||+|++|.+.-++ ..|.--.|.+.|.-
T Consensus 279 GE~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ee 316 (334)
T KOG0278|consen 279 GELYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEE 316 (334)
T ss_pred CceeeccCCCceEEEEEecCCCchhhccccChhhhccc
Confidence 9999999999999999998877 34555556555443
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.4e-28 Score=252.24 Aligned_cols=283 Identities=18% Similarity=0.263 Sum_probs=241.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
..+.|++++|||...+=+|+.+ .-.|.||+..+...... +......|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 5579999999996654344433 35899999888766543 334667899999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+|+..|.|+|+|+.+...++ .+.+|+.+|..+.|+|++.. ++++|++|+.+++||+.+......+.+|++.|.+.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999976644444 57899999999999998876 899999999999999999988779999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc-eeeee
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTY 580 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~ 580 (1132)
|+|..+ .+++|||.||.|++||.+.......--.|+.+|..+.+-|.|..+++++ .+.+++||+.+|. .+..+
T Consensus 161 ~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCCC-eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 998754 7999999999999999999865555556889999999999999999996 4569999999655 44455
Q ss_pred ccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 581 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
..|.. .|+|+++..++..|+++|-|+.|++||+.+.+.+..+... ++|.+++.+|+++.++.|-.+|.+.+-+.
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---GPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---cceeeEEecCCCceEEEecccceeeeehh
Confidence 55766 8999999999999999999999999999999999888765 37999999999999999999999877643
No 72
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.7e-27 Score=216.95 Aligned_cols=312 Identities=16% Similarity=0.244 Sum_probs=243.1
Q ss_pred ccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEE
Q 001176 333 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 412 (1132)
Q Consensus 333 ~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 412 (1132)
..+++.+|.....|.+++|+|.|. +.|+|+...+.+|.....-..+.... +...-.........+.|.+.|.|.+
T Consensus 22 ~f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~h----ea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 22 HFEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAH----EAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred ceEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccccc----ccccCCCeEEeeeccccCccEEEEE
Confidence 345677888889999999999998 79999999999998765422221000 0000000011112456999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEecC--CCceeeeeeeecccCCEEEEEEecCC--CcEEEEEEc-CCCcEEEEECCCCeEE
Q 001176 413 WGPDGLMLGVAFSKHIVHLYTYNP--TGELRQHLEIDAHVGGVNDIAFAHPN--KQLCIVTCG-DDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 413 ~spdg~~las~~~dg~i~iwd~~~--~~~~~~~~~l~~h~~~v~~v~~s~d~--~~~~l~s~~-~dg~v~vwd~~~~~~~ 487 (1132)
|||+|.+||+|+.|.+|++.-.+. ........++.-|.+.|..++|..+. ...+|++++ .|..|++-|..+|+..
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc
Confidence 999999999999999999876553 33344445677899999999997542 112666655 5788999999999999
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------CCCeEEEEEEcCCCCEEEEEecCC
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+.+.+|.+.|.++- .-++.++++|+.|.+|++||++-..++..+.. +...|.+++..|.|++|+++-.
T Consensus 177 ~a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-- 251 (350)
T KOG0641|consen 177 HALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-- 251 (350)
T ss_pred eeecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC--
Confidence 99999999999884 22458999999999999999998777665432 2357999999999999999864
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC--e--eEEEEeCCCCCCCcceEE
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--N--MLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~--~~~~~~~~~~~~~v~~~~ 636 (1132)
|....+||++.++.++.|..|.. .|.|+.|+|...++++++.|..|++-|+... . ++.....| ...+..+.
T Consensus 252 --dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i~~r 326 (350)
T KOG0641|consen 252 --DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAIQCR 326 (350)
T ss_pred --CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceEEEE
Confidence 77799999999999999999988 8999999999999999999999999998642 1 22233333 44788899
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcC
Q 001176 637 FNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
|+|..--+++.+.|.++.+|-+.
T Consensus 327 wh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 327 WHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecCccceeeeccCcceEEEeccC
Confidence 99988889999999999999753
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=4.1e-28 Score=230.52 Aligned_cols=284 Identities=12% Similarity=0.160 Sum_probs=238.4
Q ss_pred cCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
.|..+++.+.|+.+|. ||++++.|.++.||-..+|+.+.+ +.||.+.|+|++.+-+.+++
T Consensus 8 GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s~~l 67 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDSKHL 67 (327)
T ss_pred cCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCccee
Confidence 3999999999999999 899999999999999999998875 78999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEE-----cCCCcEEEEECC-------CCeEEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-----GDDKMIKVWDVV-------AGRKQY 488 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~-----~~dg~v~vwd~~-------~~~~~~ 488 (1132)
++|+.|.++++||+++|+++... .-..+|..+.|+++|. +++.+ +..+.|.++|++ ..++..
T Consensus 68 iTGSAD~t~kLWDv~tGk~la~~----k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 68 ITGSADQTAKLWDVETGKQLATW----KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred eeccccceeEEEEcCCCcEEEEe----ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 99999999999999999987643 2456899999999998 44443 334689999998 455677
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
.+..+...++.+-|.|.+ .+|++|..||.|..||++++.... ....|...|+.+++++|..++++++. |.+-.
T Consensus 142 kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dttak 215 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTTAK 215 (327)
T ss_pred EecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cccce
Confidence 888889999999998876 899999999999999999976655 55778889999999999999999975 77799
Q ss_pred EEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCe--EE------------EEECCCCeeEEEEeCCCCCCCcc
Q 001176 568 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ--IK------------FWDMDNMNMLTTVDADGGLPASP 633 (1132)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~------------iwd~~~~~~~~~~~~~~~~~~v~ 633 (1132)
+||..+-+.++++.... ++++.+++|...+++.||.... |. +|++-..+.+..+++| .++|+
T Consensus 216 l~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPIN 291 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPIN 291 (327)
T ss_pred eeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccCcc
Confidence 99999999999998755 8999999998888888653222 22 2222222344555555 55999
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 634 RLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
+++|+|+|+..++|+.||.||+.....
T Consensus 292 svAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 292 SVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eeEECCCCcccccCCCCceEEEEEecc
Confidence 999999999999999999999986654
No 74
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=8.3e-27 Score=264.32 Aligned_cols=306 Identities=14% Similarity=0.099 Sum_probs=232.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCeE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 420 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 420 (1132)
+-..|.....++|+.. +++++.+..+..|+...+..+. +....+..+.....+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 3456777788888764 6667778888889876653221 11111111222234789999999999999 89999
Q ss_pred EEEeCCCeEEEEEecCCCc----eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCC
Q 001176 421 GVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999987532 1233468899999999999998644 7999999999999999999999999999999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCe-EEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
|.+++|+|+ +.+|++++.|++|++||++++.....+..|.+. +..+.|.+++..+++++.++..++.|++||+++..
T Consensus 171 V~sla~spd--G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNLD--GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEECC--CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 999999885 489999999999999999998888788777653 45778999998988887655568899999998754
Q ss_pred -eeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001176 576 -IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 653 (1132)
Q Consensus 576 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1132)
++.....+....+....|+++++++++++ .|+.|++||+.+++.+...... ...++..++|.|.-..=+. .--..
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~~~dv~--~~Ei~ 325 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKWSLDTR--KCEIA 325 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEeccccccccc--ceeee
Confidence 44444434433566678999999999887 5999999999999887765443 2346788999885432111 11244
Q ss_pred EEEEcCC
Q 001176 654 KILANSD 660 (1132)
Q Consensus 654 ~iw~~~~ 660 (1132)
|+|.+..
T Consensus 326 r~~~l~~ 332 (493)
T PTZ00421 326 RFYALTY 332 (493)
T ss_pred EEEEecC
Confidence 6666543
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.9e-28 Score=226.94 Aligned_cols=286 Identities=16% Similarity=0.245 Sum_probs=231.3
Q ss_pred CeeEEEEcc--CCCeEEEEEc-----CCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC-
Q 001176 345 NVMSMDFHP--QQQTILLVGT-----NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD- 416 (1132)
Q Consensus 345 ~V~~~~~sp--dg~~lla~g~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd- 416 (1132)
.=.++.||| .++..+|++. ..|.+.|-++..++.+.. +..+ .-.+.+..++||++
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~ 72 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENH 72 (311)
T ss_pred ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCC
Confidence 346788999 4553334432 358899999975444331 2222 24668999999995
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCC
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
.+.+++++.||++++||.... ..++..++.|...|.++.|++-.++ .+++++.|++|++|+...++.+.+|.||...
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~ 149 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC 149 (311)
T ss_pred cceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccE
Confidence 567888999999999995443 2344578899999999999998776 6788899999999999999999999999999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCC-EEEEEecCCCCCCeEEEEeCCCC-
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESEG- 574 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~- 574 (1132)
|...+|+|... ++++++|.|+++++||++..+....+..|...+.++.|+.-.. .+++++ .|+.|+.||++.-
T Consensus 150 Iy~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~----vd~~vr~wDir~~r 224 (311)
T KOG0277|consen 150 IYQAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG----VDNLVRGWDIRNLR 224 (311)
T ss_pred EEEEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC----CCceEEEEehhhcc
Confidence 99999999754 8999999999999999999998888999999999999998655 455554 4888999999874
Q ss_pred ceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCC-eeEEEEeCCCCCCCcceEEEcC-CCCEEEEEeCCC
Q 001176 575 AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDN 651 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg 651 (1132)
.++..+.+|.- .|+.+.|+|.. ..|++++.|-+++|||...+ ..+.+...|.. -+..+.|++ ++.++|+++-|+
T Consensus 225 ~pl~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe 301 (311)
T KOG0277|consen 225 TPLFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDE 301 (311)
T ss_pred ccceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeeccccc
Confidence 46778888877 89999999976 67788999999999999854 34455555543 688899998 788999999999
Q ss_pred cEEEEEc
Q 001176 652 GIKILAN 658 (1132)
Q Consensus 652 ~i~iw~~ 658 (1132)
.+.||+.
T Consensus 302 ~l~Vw~p 308 (311)
T KOG0277|consen 302 LLYVWNP 308 (311)
T ss_pred ceeeecc
Confidence 9999984
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-26 Score=220.47 Aligned_cols=235 Identities=14% Similarity=0.207 Sum_probs=204.4
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
.+.||+.+++.+.++.+|.+|.+|+.|.++.||-...|+.+. ++.||++.|+|+..+-+.+ .++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 478999999999999999999999999999999998888776 7899999999999999999 89999999999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe-----cCCeEEEEEcC-------CCCceEEecCCCCeEEEEEEc
Q 001176 480 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-----IDGKIKAWLYD-------YLGSRVDYDAPGNWCTMMAYS 547 (1132)
Q Consensus 480 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-----~dg~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~s 547 (1132)
|+++|+++.+++ -..+|..+.|++.+ ++++... ..+.|.++|++ ..++...+..+...++.+-|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999987 56789999998765 5555543 34679999988 445567788888999999999
Q ss_pred CCCCEEEEEecCCCCCCeEEEEeCCCCce-eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC
Q 001176 548 ADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 626 (1132)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1132)
|-+++|++|.. ++.|..||+++|+. +..-+.|.. .|+.++++++..++++++.|.+-++||+.+.+.+.++...
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999999964 88899999999854 455566665 8999999999999999999999999999999999988754
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCC
Q 001176 627 GGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 627 ~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
.+|++.+++|-...++.|+..
T Consensus 232 ---~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 232 ---RPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ---ccccceecccccceEEecCCc
Confidence 379999999977777777653
No 77
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.6e-27 Score=227.58 Aligned_cols=274 Identities=18% Similarity=0.259 Sum_probs=221.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCC-ccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
..+.|.+++|||....++++||-||+||+|+++.. .... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 56799999999966668889999999999999874 3221 1245699999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+....-.|+|||.|++|+.||.+...++.++. ....+.++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998544 36789999999999887655589999999999999999999988875 45667777
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEE-ecC-CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC--ce
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AI 576 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~ 576 (1132)
..-. .+++.+..++.|.+|+++.+..... ... -.-.++|++..+|.+..+.|+. +|++.+..+..+ +.
T Consensus 163 Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 5422 6899999999999999976554332 221 2337889999898887788875 667777777765 45
Q ss_pred eeeeccccCC--------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe
Q 001176 577 KRTYSGFRKR--------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 648 (1132)
Q Consensus 577 ~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1132)
-.+|+.|... .|++++|+|....|+++|.||++.+||-.....+...+.+. .+|++.+|+.+|.+++.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~--qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP--QPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC--CccceeEecCCCCEEEEEe
Confidence 5567777631 37789999999999999999999999998877777766554 4899999999999888664
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.3e-28 Score=265.52 Aligned_cols=300 Identities=15% Similarity=0.189 Sum_probs=219.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC---CCC
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP---DGL 418 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp---dg~ 418 (1132)
|.+.||++.||+||+ |||+|+.|+.|+||.+...+.... ..-+.......+. -.+.+.-+.-++ .++
T Consensus 266 h~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~---~~~~~~~~~~~~~------~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRV---AEGDSSCMYFEYN------ANSQIEPSTSSEEKISSR 335 (712)
T ss_pred cCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcc---cccccchhhhhhh------hccccCcccccccccccc
Confidence 999999999999999 799999999999999977443211 0000000000000 000011111111 011
Q ss_pred --eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCC
Q 001176 419 --MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 419 --~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|++++.|++|++|++....+++.|. |.+.
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hndf 411 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HNDF 411 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCCe
Confidence 11122222222222211111123445788999999999999876 69999999999999999999999996 9999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 576 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1132)
|+||+|+|..| +++++|+.||.||||++...+...- ..-..-|++++|.|||++.++|+. +|..++|+....+.
T Consensus 412 VTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 412 VTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLKL 485 (712)
T ss_pred eEEEEecccCC-CcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEe----ccEEEEEEccCCeE
Confidence 99999999866 8999999999999999976544433 333478999999999999999987 77899999988776
Q ss_pred eeeecccc-------CCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe
Q 001176 577 KRTYSGFR-------KRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 648 (1132)
Q Consensus 577 ~~~~~~~~-------~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1132)
...+.-+. ...|+.+.|.|.. ..+++.+.|..|||+|.++..++..+++......-....|+.||++|++++
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 65543221 1269999998754 458888899999999999999999998776655667889999999999999
Q ss_pred CCCcEEEEEcCCc
Q 001176 649 SDNGIKILANSDG 661 (1132)
Q Consensus 649 ~dg~i~iw~~~~~ 661 (1132)
+|..|++|+....
T Consensus 566 eDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 566 EDSWVYIWKNDSF 578 (712)
T ss_pred cCceEEEEeCCCC
Confidence 9999999997543
No 79
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.7e-26 Score=218.98 Aligned_cols=274 Identities=14% Similarity=0.217 Sum_probs=237.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCeE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 420 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 420 (1132)
|...|.+++|+-+|. -|++|+.|+++.+|++...+.... ....+|.+.|-.++|+| ...++
T Consensus 19 ~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred hhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcce
Confidence 778999999999999 499999999999999987744332 12568999999999998 57799
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
++++.|.+|++||+..+++.... . ..+.=..+.|+|+|. +++.++.|..|.+.|.++.+.+...+ ....+.-+
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~ 153 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI 153 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence 99999999999999999877643 2 233344689999999 89999999999999999888776554 45567888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeee
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 580 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1132)
+|+.++ ++++.....|+|.|-.....+++..+..|.....|+.|+|+|+++++|+. |..+.+||+...-+++.+
T Consensus 154 ~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 154 SWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERCI 227 (313)
T ss_pred eecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhheee
Confidence 887443 67877888899999999999999999999999999999999999999986 778999999998899999
Q ss_pred ccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 581 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
.-+.- +|+.+.|+.+|++|++|++|..|-|=++.+|..+..++..+ +...++|+|...+||.+++|
T Consensus 228 sRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 228 SRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 88776 89999999999999999999999999999999999997653 57899999999999988775
No 80
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.6e-27 Score=230.65 Aligned_cols=308 Identities=17% Similarity=0.230 Sum_probs=241.1
Q ss_pred EEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCcccc-ccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 337 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA-HKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 337 ~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
...+. |++.+.+.+|||||. ++|+|+.|..|+|.|++..-... ...+..-+.. ...|... .+-.|.++|+++.|+
T Consensus 105 t~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~q-a~hPvIR-TlYDH~devn~l~FH 181 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQ-ARHPVIR-TLYDHVDEVNDLDFH 181 (430)
T ss_pred eEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcc-cCCceEe-ehhhccCcccceeec
Confidence 34444 999999999999998 89999999999999987321100 0000000000 1112222 256799999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe---c
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF---E 491 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~---~ 491 (1132)
|....|++|+.|++|+++|.......+..+.+ ....+|.++.|+|.|. +|+.|..-.++++||+++-++-..- .
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccc
Confidence 99999999999999999999875544333333 2456899999999999 8999999999999999998875433 3
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCC-CeEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEW 569 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 569 (1132)
.|.+.|+++.+++.+ .+.++++.||.|++||--+.+++..+. .|+ ..|.+..|+.+|+++++.|. |..+++|
T Consensus 259 qht~ai~~V~Ys~t~--~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLW 332 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTG--SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLW 332 (430)
T ss_pred ccccceeEEEecCCc--cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeee
Confidence 589999999997754 899999999999999988888877553 344 48999999999999999874 8889999
Q ss_pred eCCCCceeeeeccccCC----ceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE
Q 001176 570 NESEGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 644 (1132)
Q Consensus 570 d~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1132)
.+.+++++..+.|.... --+...|+....+++.-. ..+.++-||.+++..+..+.. ++.+.+..+.-+|.+.-+
T Consensus 333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAF 411 (430)
T ss_pred eecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCce
Confidence 99999999999875211 123356888888888765 567899999999877766543 345689999999999999
Q ss_pred EEEeCCCcEEEEE
Q 001176 645 AVTTSDNGIKILA 657 (1132)
Q Consensus 645 ~~~~~dg~i~iw~ 657 (1132)
++++.|..+|+|-
T Consensus 412 mTcsdD~raRFWy 424 (430)
T KOG0640|consen 412 MTCSDDFRARFWY 424 (430)
T ss_pred eeecccceeeeee
Confidence 9999999999995
No 81
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.9e-26 Score=221.97 Aligned_cols=282 Identities=14% Similarity=0.231 Sum_probs=232.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
....|.++.|+++|. ++++++.|.+++|||..+++.+.. +..++-.|..+.|......++
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 467999999999999 577788999999999999988764 445677888899988777777
Q ss_pred EEeC--CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEE
Q 001176 422 VAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 499 (1132)
Q Consensus 422 s~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 499 (1132)
.++. |.+|+..++.+.+.++ .+.||...|..++.+|-+. .+++++.|++|++||++..++...+.....++
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7766 8899999999998887 6899999999999999998 89999999999999999888877765444444
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCC--ceEEecC---CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDA---PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
++|.| .|-++|++...+.|++||++... +-..+.. .....+.+.|||||++++.+.. .+.+++.|.-+|
T Consensus 146 ~AfDp--~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAFDP--EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeECC--CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 45655 44788888888899999998753 2233333 3558899999999999998864 778999999999
Q ss_pred ceeeeeccccCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001176 575 AIKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 652 (1132)
Q Consensus 575 ~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1132)
..+.++.++.... -...+|+||++++++|+.||+|.+|++++++.+..+.+. ...++.++.|+|.-.++++++ ..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ce
Confidence 9999998876532 245789999999999999999999999999999999875 344789999999877776654 47
Q ss_pred EEEEEcC
Q 001176 653 IKILANS 659 (1132)
Q Consensus 653 i~iw~~~ 659 (1132)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7778544
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=6.6e-27 Score=264.68 Aligned_cols=283 Identities=17% Similarity=0.288 Sum_probs=247.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+...+.|..|. ++ .+++|+.|++|++||..++..+.. -+.||.+.|.++++..-+.+|+
T Consensus 207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence 56789999999 44 488999999999999999887653 1678999999999988788999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+|+.|.++++||+.+|++.. .+.+|.+.|.++...+. ++++|+.|.+|++|++.++..+..+.+|.++|.++.
T Consensus 266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 99999999999999999776 78899999999987543 689999999999999999999999999999999998
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC-ceeeee
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTY 580 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~ 580 (1132)
.+ +.++++|+.|++|++||+.+.+++..+.+|.++|+++.+.+. ..+++++. |+.|++||+++. +++.++
T Consensus 339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhhh
Confidence 85 379999999999999999999999999999999999988776 88999986 678999999999 999999
Q ss_pred ccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 581 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
.+|.. .+..+.+ .++++++++.|+.|++||..+++++..+..+ +...|..+++. ...+++++.||.+++||+.+
T Consensus 410 ~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 410 QGHTS-LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cCCcc-ccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99887 5544443 4689999999999999999999999999874 23467777765 46788999999999999999
Q ss_pred cceeeeec
Q 001176 661 GVRLLRML 668 (1132)
Q Consensus 661 ~~~~~~~~ 668 (1132)
+ ...+.+
T Consensus 484 ~-~~~~~l 490 (537)
T KOG0274|consen 484 G-TLIRTL 490 (537)
T ss_pred C-chhhhh
Confidence 8 444433
No 83
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.7e-27 Score=253.48 Aligned_cols=278 Identities=17% Similarity=0.238 Sum_probs=239.9
Q ss_pred eEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC
Q 001176 347 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK 426 (1132)
Q Consensus 347 ~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d 426 (1132)
.-++||..+ .||+|. ...|++|+..+++.... ..-++..|+++.|+++|.+||+|..+
T Consensus 181 nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence 346788554 577764 46999999999875432 12247899999999999999999999
Q ss_pred CeEEEEEecCCCceeeeeeeec-ccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE-ecCCCCCeEEEEeec
Q 001176 427 HIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPHH 504 (1132)
Q Consensus 427 g~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~h~~~v~~i~~~~ 504 (1132)
|.|.|||....+.+. .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++
T Consensus 239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999999877665 5667 99999999998 44 789999999999999998876655 889999999999987
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCC-CCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc
Q 001176 505 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 583 (1132)
Q Consensus 505 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1132)
++ .++++|+.|+.+.|||.........+..|...|.+++|+|- ...||+|+. ..|+.|++||..+|+.+......
T Consensus 312 d~--~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdtg 387 (484)
T KOG0305|consen 312 DG--NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDTG 387 (484)
T ss_pred CC--CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccccC
Confidence 55 89999999999999999988999999999999999999995 456777765 56899999999999999888765
Q ss_pred cCCceEEEEEeCCCCEEEE--EEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 584 RKRSLGVVQFDTTRNRFLA--AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
. .|..+.|++..+.+++ |..++.|.||++.+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+.
T Consensus 388 s--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 388 S--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred C--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 5 6999999999977777 44778999999999999999988865 7999999999999999999999999998664
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=218.15 Aligned_cols=276 Identities=14% Similarity=0.225 Sum_probs=234.1
Q ss_pred eeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE--EecCCCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001176 445 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 522 (1132)
Q Consensus 445 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~ 522 (1132)
++++|...|.+++|+-+|. .+++|+.|+++.+|++...+... ..++|.+.|-.++|+|..+ +.+++++.|.+|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 5678999999999999999 79999999999999998876554 3468999999999998765 79999999999999
Q ss_pred EEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEE
Q 001176 523 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 602 (1132)
Q Consensus 523 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 602 (1132)
||.+.+++........+.+ .++|+|+|.+++++.. +..|...|.++.+.+...+... .+.-++|+-++++++.
T Consensus 92 wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~k----dD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNK----DDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDLFFL 164 (313)
T ss_pred EEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecC----cccEEEEEecccceeehhcccc--eeeeeeecCCCCEEEE
Confidence 9999999988877666555 5789999999999864 6679999999888877666543 4677889888888888
Q ss_pred EEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCC
Q 001176 603 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 682 (1132)
Q Consensus 603 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1132)
....|.|.|......+++..++.|.. ...|+.|+|+|+++|+|+.|..+.+||+..- .+.+.+.
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~s--nCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~is------------- 228 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHPS--NCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCIS------------- 228 (313)
T ss_pred ecCCceEEEEeccccccccccccCCc--ceEEEEECCCCceEeeccccceeeccChhHh-hhheeec-------------
Confidence 88889999999999999999998854 6789999999999999999999999997643 1111100
Q ss_pred CCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEe
Q 001176 683 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 762 (1132)
Q Consensus 683 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~ 762 (1132)
T Consensus 229 -------------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 229 -------------------------------------------------------------------------------- 228 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE
Q 001176 763 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 842 (1132)
Q Consensus 763 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~ 842 (1132)
++ ..+|..
T Consensus 229 -----------------------------------------------------------------------Rl-dwpVRT 236 (313)
T KOG1407|consen 229 -----------------------------------------------------------------------RL-DWPVRT 236 (313)
T ss_pred -----------------------------------------------------------------------cc-cCceEE
Confidence 03 678999
Q ss_pred EEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCC
Q 001176 843 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 900 (1132)
Q Consensus 843 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d 900 (1132)
+.||.||++||+|+ |..|-|=++++|..+..+. +.++-..++|+| ...+||.+..|
T Consensus 237 lSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 237 LSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred EEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 99999999999999 8889999999999888887 788899999999 88999988766
No 85
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=8e-27 Score=241.17 Aligned_cols=297 Identities=19% Similarity=0.259 Sum_probs=226.5
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
|...|..+++.|.|.++++|+-|.+|++||+.....+. .. .+...+. . ...|.++.|++
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~-----------------~~-fr~l~P~--E-~h~i~sl~ys~ 224 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM-----------------RS-FRQLQPC--E-THQINSLQYSV 224 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccc-----------------hh-hhccCcc--c-ccccceeeecC
Confidence 77889999999999999999999999999986422110 00 1111112 1 45799999999
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEEE------------eeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce-e
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMTM------------FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-V 913 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~~------------~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~ 913 (1132)
.|..|++.+ ....+|+|-+..+.... -+||...++|.+|+|.....+++++.||++||||+..-+ .
T Consensus 225 Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 225 TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 999888887 78899999776544333 357999999999999878889999999999999998653 2
Q ss_pred eeeec-----cccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE
Q 001176 914 KTKLK-----GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 914 ~~~l~-----~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
+.++. +-.-.++.++|++||+++|+|+.||.|.+|+..+........+. ..|. +...+++++||+||++|++
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk--~AH~-~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK--DAHL-PGQDITSISFSYDGNYLLS 381 (641)
T ss_pred eeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEee--eccC-CCCceeEEEeccccchhhh
Confidence 33332 22336899999999999999999999999998654433322332 2333 2257999999999999999
Q ss_pred -EeCCeEEEEeC-C-CCceeecCCCCCCCCCeEEEEEccCCCEEEEEe------cCCcEEEEeCCCcceecccCCCcccc
Q 001176 989 -VHESQISVYDS-K-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGF------CDGAIGVFDAETLRFRCRIGPSAYIP 1059 (1132)
Q Consensus 989 -~~d~~v~vwd~-~-~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~------~dg~i~vwd~~~~~~~~~~~~~~~~~ 1059 (1132)
+.|++++|||+ + .+++..+... ....+-+.++||||.++|++|+ ..|.+++||..+...+..+...
T Consensus 382 Rg~D~tLKvWDLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---- 456 (641)
T KOG0772|consen 382 RGFDDTLKVWDLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---- 456 (641)
T ss_pred ccCCCceeeeeccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence 99999999999 3 3344433322 1256778999999999999985 3578999999999999888622
Q ss_pred ccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEE-ecCCCc
Q 001176 1060 TYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV-EPSDAE 1101 (1132)
Q Consensus 1060 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW-~~~~~~ 1101 (1132)
.+.|..+.|+| .=+.|++|+.||.++++ |-+..+
T Consensus 457 -------~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S~ 491 (641)
T KOG0772|consen 457 -------TASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNESI 491 (641)
T ss_pred -------CceEEEEeecc-hhhheeeecCCCceEEEECccccc
Confidence 57899999999 66788889999998875 554444
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-25 Score=220.55 Aligned_cols=253 Identities=16% Similarity=0.218 Sum_probs=212.6
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeC--CCcEEEEEccccee
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVRVDEV 913 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~--dg~v~iwd~~~~~~ 913 (1132)
...|.++.|+++|.++++++ |.+++|||..+++.++++..+.-.+..+.|.. ....+..++. |.+|+.-++.+.+.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecCce
Confidence 56899999999999999988 88999999999999999998888899999987 5556666665 88999999999999
Q ss_pred eeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCC-
Q 001176 914 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES- 992 (1132)
Q Consensus 914 ~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~- 992 (1132)
++.+.||...|++|+.+|-+..++|++.|++|++||++..++... +.. ..-..+||.|+|-++|++.++
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~--l~~--------~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL--LNL--------SGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE--Eec--------CCCcceeECCCCcEEEEecCCC
Confidence 999999999999999999999999999999999999997664332 111 123478999999999997544
Q ss_pred eEEEEeC---CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCC
Q 001176 993 QISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH 1069 (1132)
Q Consensus 993 ~v~vwd~---~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1132)
.|++||+ ..+....+....+-..+++.|.|||||++++.++..+.+++.|.-+|..+..+.... .....
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~--------~~~~~ 234 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP--------NAGNL 234 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc--------CCCCc
Confidence 9999999 455555555554557899999999999999999999999999999999888876442 22234
Q ss_pred cEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccccCCCC
Q 001176 1070 PLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPS 1109 (1132)
Q Consensus 1070 v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~~~~~ 1109 (1132)
.....|+| |++++++|+.||+|.+|++++++.......|
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 47899999 9999999999999999999999955444333
No 87
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=7.6e-27 Score=226.00 Aligned_cols=254 Identities=15% Similarity=0.270 Sum_probs=206.2
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecC------------CC---ceeeeeeeecccCCEEEEEEecCCCc
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP------------TG---ELRQHLEIDAHVGGVNDIAFAHPNKQ 464 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~------------~~---~~~~~~~l~~h~~~v~~v~~s~d~~~ 464 (1132)
.+..|++++.+.+|||||.++|+|+.|..|+|.|++. +. .-....++..|.++|+++.|+|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~- 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET- 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-
Confidence 3677999999999999999999999999999999871 11 1112447888999999999999998
Q ss_pred EEEEEEcCCCcEEEEECCCCeEEEEec--CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCC
Q 001176 465 LCIVTCGDDKMIKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGN 539 (1132)
Q Consensus 465 ~~l~s~~~dg~v~vwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~ 539 (1132)
+|++|+.|++|+++|.......+.++ ....+|.++.|+|.+ .+|+.|....++++||+.+.++...- ..|.+
T Consensus 186 -ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 -ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred -eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 99999999999999987654333332 245789999999976 89999999999999999998876643 34667
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec-cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
.|+++.+++.|+..++++. ||.|++||--+++++.++. .|.+..|.+..|..+++++++.|.|..+++|.+.+++
T Consensus 263 ai~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASK----DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ceeEEEecCCccEEEEecc----CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 9999999999999999974 7889999999999999886 4555579999999999999999999999999999999
Q ss_pred eEEEEeCCCCCC---CcceEEEcCCCCEEEEEeC-CCcEEEEEcCCc
Q 001176 619 MLTTVDADGGLP---ASPRLRFNKEGSLLAVTTS-DNGIKILANSDG 661 (1132)
Q Consensus 619 ~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~ 661 (1132)
++....+.+..+ .-+...|+....+++.-.. .+.+.-||.+++
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 999987653221 2244556666666655433 456777877665
No 88
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.3e-26 Score=229.57 Aligned_cols=282 Identities=20% Similarity=0.297 Sum_probs=234.6
Q ss_pred cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccC-CccEEEEEecCCeEEEEEcC
Q 001176 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYD 526 (1132)
Q Consensus 448 ~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~~~l~s~s~dg~i~~wd~~ 526 (1132)
.|.+.|.++... ++ .|+||+.||.+++|| ..|+..+.+.||.++|.+++|.-.. ....+++++.|.++++|.++
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 488899999887 55 799999999999999 7899999999999999988876443 22469999999999999887
Q ss_pred CCCceE----EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC-------------------------CCcee
Q 001176 527 YLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-------------------------EGAIK 577 (1132)
Q Consensus 527 ~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-------------------------~~~~~ 577 (1132)
.+.... ...+|...|.+++..++|..+++++. |..|.+|+.. ++.++
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 765433 34589999999999999999999987 7789999931 13356
Q ss_pred eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 578 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
.++.||.. +|.++.|++ ...+++++-|.+|+.||+.++..+..+.... .++++..+|...+|++|+.|..+++||
T Consensus 254 vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 254 VTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecC
Confidence 77889988 899999998 6789999999999999999999998887643 589999999999999999999999999
Q ss_pred cCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccc
Q 001176 658 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 737 (1132)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1132)
.+++..
T Consensus 329 PR~~~g-------------------------------------------------------------------------- 334 (423)
T KOG0313|consen 329 PRTGDG-------------------------------------------------------------------------- 334 (423)
T ss_pred CCCCCC--------------------------------------------------------------------------
Confidence 876510
Q ss_pred ccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccccccc
Q 001176 738 AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 817 (1132)
Q Consensus 738 ~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l 817 (1132)
.+...
T Consensus 335 ---------------------------------s~v~~------------------------------------------ 339 (423)
T KOG0313|consen 335 ---------------------------------SVVSQ------------------------------------------ 339 (423)
T ss_pred ---------------------------------ceeEE------------------------------------------
Confidence 00000
Q ss_pred ccCCCcCcccccCCCCCCCCCCeeEEEEeeCCC-EEEEee-CCeEEEEECCCCe-EEEEeeCCCCCeEEEEEeCCCCCeE
Q 001176 818 WQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNII 894 (1132)
Q Consensus 818 ~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~-~la~~s-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~sp~~~~~l 894 (1132)
.+.+ | ...|.++.++|... .|++++ |+++++||+.+.+ ++..+.+|.+.|.++.|.. +..+
T Consensus 340 -----------s~~g--H-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~I 403 (423)
T KOG0313|consen 340 -----------SLIG--H-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLI 403 (423)
T ss_pred -----------eeec--c-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceE
Confidence 0112 6 77888888888555 567777 9999999999877 8999999999999999984 6799
Q ss_pred EEEeCCCcEEEEEc
Q 001176 895 AIGMEDSSVQIYNV 908 (1132)
Q Consensus 895 asg~~dg~v~iwd~ 908 (1132)
++|+.|.+|+|+.-
T Consensus 404 vSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 404 VSGGADNKLRIFKG 417 (423)
T ss_pred EeccCcceEEEecc
Confidence 99999999999864
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=238.17 Aligned_cols=285 Identities=16% Similarity=0.255 Sum_probs=234.5
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
..+.|.+++|+|...+=++.+..-.+.+|+..+. ........ - ...+++++|-.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~----------------------~~~k~~sr---F-k~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR----------------------SVRKTFSR---F-KDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchh----------------------hhhhhHHh---h-ccceeEEEeec
Confidence 4578999999997665555555556777764321 11111111 1 66799999999
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeE
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 926 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 926 (1132)
||+++|+|+ .|.|+|||+.+...++.+.+|..+|..+.|+|+++.++++|++|+.+++||+.+......+.+|.+.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999999 7999999988877889999999999999999999999999999999999999999887789999999999
Q ss_pred EEEcCCC-CEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCC-CCce
Q 001176 927 LAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK-LECS 1004 (1132)
Q Consensus 927 l~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~-~~~~ 1004 (1132)
.+|+|-. .+++|||-||+|++||+.... ........| .+|..+.|-|.|..++++....|+|||+. ++..
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 9999965 589999999999999998753 112222223 46899999999999999999999999994 5554
Q ss_pred eecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEE
Q 001176 1005 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIA 1084 (1132)
Q Consensus 1005 ~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 1084 (1132)
..... .|...|||+++..++..|++|+-|+.|++||+.+-+.+..+. -+..+++++.+| |+..++
T Consensus 231 l~~~~--~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~------------~~~pvLsiavs~-dd~t~v 295 (487)
T KOG0310|consen 231 LTSMF--NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK------------YPGPVLSIAVSP-DDQTVV 295 (487)
T ss_pred hhhhh--cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee------------cccceeeEEecC-CCceEE
Confidence 43332 269999999999999999999999999999999999888775 237899999999 889999
Q ss_pred EEeCCCcEEEEecCCCc
Q 001176 1085 LGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1085 s~~~Dg~i~vW~~~~~~ 1101 (1132)
.|..||.+.+=+....+
T Consensus 296 iGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 296 IGMSNGLVSIRRREVKK 312 (487)
T ss_pred Eecccceeeeehhhccc
Confidence 99999999877665544
No 90
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.2e-27 Score=220.10 Aligned_cols=270 Identities=11% Similarity=0.210 Sum_probs=215.9
Q ss_pred ecCCCCCCceeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccc
Q 001176 317 FAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 396 (1132)
Q Consensus 317 ~~~~g~~~~~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1132)
+...|+....-..+...-.....+.-.+.+..++||+.....+++++.||+++|||......
T Consensus 34 l~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------ 95 (311)
T KOG0277|consen 34 LAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------ 95 (311)
T ss_pred cccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------
Confidence 34444443333334444556677778899999999998887888999999999999543221
Q ss_pred cccccCCCCcCeEEEEEcC-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc
Q 001176 397 QNALLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 475 (1132)
Q Consensus 397 ~~~~~~~h~~~V~~v~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~ 475 (1132)
+...++.|...|.++.|++ +++.+++++.|++|++|+..-+..+. ++.||...|...+|+|...+ ++++++.|++
T Consensus 96 Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~ 171 (311)
T KOG0277|consen 96 PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGT 171 (311)
T ss_pred chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCce
Confidence 1123778999999999999 56678888999999999998877665 68999999999999998776 8999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCeEEEEEEcCCC-CEE
Q 001176 476 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRL 553 (1132)
Q Consensus 476 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l 553 (1132)
+++||++..-.-..+..|...+.++.|+... ..+++||+.|+.|+.||+++.+. +..+.+|+-.|+.++|||.. ..|
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~-~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL 250 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYN-HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL 250 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccC-CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh
Confidence 9999998643334488999999999998654 48999999999999999998654 55788899999999999975 567
Q ss_pred EEEecCCCCCCeEEEEeCCCCc-eeeeeccccCCceEEEEEeC-CCCEEEEEEcCCeEEEEEC
Q 001176 554 FSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 614 (1132)
++++. |-++++||...+. .+.+...|.. -+..+.|++ ++.++++++-|+.++||+.
T Consensus 251 aSasY----DmT~riw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASY----DMTVRIWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccc----cceEEecccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 78876 7889999998554 4445554444 788888887 4578899999999999984
No 91
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.9e-26 Score=261.72 Aligned_cols=303 Identities=17% Similarity=0.254 Sum_probs=235.8
Q ss_pred cccceEEEEEecCCceEEeec--ccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEE
Q 001176 768 AASKVVRLIYTNSGLSLLALA--SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 845 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 845 (1132)
+...|.++.++|||..+++++ .|+.+++|+...--. ....++..-...+. .+ ..| .+.|.|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~-~m--~~h-~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLC-TM--DDH-DGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhe-ee--ccc-cCceeEEEE
Confidence 345689999999999999999 799999997642100 01112221011111 11 237 899999999
Q ss_pred eeCCCEEEEee-CCeEEEEECCC------------------CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 001176 846 SKNDSYVMSAS-GGKVSLFNMMT------------------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIY 906 (1132)
Q Consensus 846 s~dg~~la~~s-dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iw 906 (1132)
+|||++||+|+ |+.|.||+... ++....+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 99999999999 67799998762 256788999999999999999 99999999999999999
Q ss_pred EcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEE
Q 001176 907 NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 986 (1132)
Q Consensus 907 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 986 (1132)
+..+.+.+.++++|.+.|..+.|.|-|+++||-++|++|++|++......+ .+..+..+.........+.|||||++|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence 999999999999999999999999999999999999999999977754322 233333333333457889999999999
Q ss_pred EEE--eC---CeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccC-----CC------------EEEEEecCCcEEEEeC
Q 001176 987 LVV--HE---SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCD-----GL------------LVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 987 ~~~--~d---~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~d-----g~------------~las~~~dg~i~vwd~ 1043 (1132)
++. -+ .++.+.+- +.+.-..+ -+|.+++..++|+|. .+ .+|+|+.|++|.||..
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~L---vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKDL---VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeeee---ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 993 22 35667665 33333333 466899999999971 11 6899999999999999
Q ss_pred CCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1044 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
...+++..+. +--...++.++|+| ||..|+++|.||+|.+..++..|
T Consensus 312 ~~~RPl~vi~----------~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 312 ALPRPLFVIH----------NLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCCCchhhhh----------hhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 8887765543 12346788999999 99999999999999999998766
No 92
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.9e-26 Score=219.70 Aligned_cols=240 Identities=22% Similarity=0.274 Sum_probs=202.2
Q ss_pred CCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCC--eEEEEeCCCcEEEEEcc
Q 001176 833 SKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVR 909 (1132)
Q Consensus 833 ~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~--~lasg~~dg~v~iwd~~ 909 (1132)
..| ...++++|. ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ ... .|++|+.||.|.+|+..
T Consensus 40 ~aH-~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 40 SAH-AGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred ccc-ccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcC
Confidence 347 899999998 689999999 99999999999999999999999999999998 543 88899999999999999
Q ss_pred cceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE
Q 001176 910 VDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 989 (1132)
Q Consensus 910 ~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 989 (1132)
..+++..+++|.+.|+.++.+|.|++.++.+.|+.+++||+-.|+......+.. ..+.+.|+|.|.+++++
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVS 186 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEE
Confidence 999999999999999999999999999999999999999998877433222221 23569999999999999
Q ss_pred eCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCC
Q 001176 990 HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTA 1068 (1132)
Q Consensus 990 ~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1132)
....|-+|.+ +......... ...+.++.|. ++..|++|..|+.|.+||.+++.+.+.+. +|..
T Consensus 187 ~~~~i~i~q~d~A~v~~~i~~----~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-----------AH~~ 250 (362)
T KOG0294|consen 187 GRNKIDIYQLDNASVFREIEN----PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-----------AHEN 250 (362)
T ss_pred eccEEEEEecccHhHhhhhhc----cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-----------cchh
Confidence 8899999999 4444333322 3456666664 56788999999999999999987776665 8888
Q ss_pred CcEEEE-eCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1069 HPLVIA-PHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1069 ~v~~~~-~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
+|-.+. |...++.+|+|++.||.|+|||+....
T Consensus 251 RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 251 RVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred heeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 998888 443367899999999999999998874
No 93
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.5e-26 Score=246.58 Aligned_cols=261 Identities=17% Similarity=0.288 Sum_probs=226.5
Q ss_pred eeccCCcccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCC-
Q 001176 326 VYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND- 403 (1132)
Q Consensus 326 ~~~~d~~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 403 (1132)
++.|+...+.+..... +...|+++.|+++|+ +||+|..+|.|.|||....+.+.. +.+
T Consensus 199 vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~ 258 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRGS 258 (484)
T ss_pred EEEEecCCCceEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccCC
Confidence 4555566666555555 489999999999999 699999999999999998876654 445
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
|...|.+++|+ +..+.+|+.|+.|..+|+...+.... .+.+|...|..+.|++|+. ++++|+.|+.+.|||...
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLS 332 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCC
Confidence 99999999997 77899999999999999998776543 3789999999999999999 899999999999999988
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 561 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1132)
..++..+..|.+.|.+++|+|-.. .+||+|+ .|++|++||..++..+..+. .+..|.++.|++..+-|+++.. .
T Consensus 333 ~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG--~ 408 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG--Y 408 (484)
T ss_pred ccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--C
Confidence 889999999999999999999876 6888874 69999999999776655544 5678999999999988777654 3
Q ss_pred CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 001176 562 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1132)
.+..|.+|+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 409 s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 466899999999999999999998 7999999999999999999999999998764
No 94
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=3.7e-26 Score=236.28 Aligned_cols=302 Identities=16% Similarity=0.218 Sum_probs=235.8
Q ss_pred cccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEE
Q 001176 332 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 410 (1132)
Q Consensus 332 ~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 410 (1132)
.|..+...+. |+..|.++++.|.|-+ +++|+.|.+|++||+........ .|+. +.......|.+
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr~-------------l~P~E~h~i~s 219 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFRQ-------------LQPCETHQINS 219 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhhc-------------cCcccccccce
Confidence 3455555666 7789999999999995 99999999999999986543321 1221 22345568999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEecCCCcee---------eeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001176 411 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELR---------QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 481 (1132)
Q Consensus 411 v~~spdg~~las~~~dg~i~iwd~~~~~~~~---------~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~ 481 (1132)
++||+.|..|++.+.....+|+|-++.+... ....-+||...++|.+|+|+.+. .++|++.||+++|||+
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv 298 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDV 298 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEec
Confidence 9999999999999888899999987654332 22345689999999999999988 7999999999999999
Q ss_pred CCCeE-EEEec-----CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCC--eEEEEEEcCCC
Q 001176 482 VAGRK-QYTFE-----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGN--WCTMMAYSADG 550 (1132)
Q Consensus 482 ~~~~~-~~~~~-----~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~--~v~~~~~s~~~ 550 (1132)
..-+. +..++ +..-++++++|+++ |.+|++|+.||.|.+|+....... ..-..|.. .|+|++||+||
T Consensus 299 ~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd--g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 299 NNTKSQLQVIKTKPAGGKRVPVTSCAWNRD--GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred CCchhheeEEeeccCCCcccCceeeecCCC--cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 86543 23332 34567888899775 488999999999999997554332 23345555 89999999999
Q ss_pred CEEEEEecCCCCCCeEEEEeCCCC-ceeeeeccccC-CceEEEEEeCCCCEEEEEE------cCCeEEEEECCCCeeEEE
Q 001176 551 TRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRK-RSLGVVQFDTTRNRFLAAG------DEFQIKFWDMDNMNMLTT 622 (1132)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~ 622 (1132)
++|++-+. |..+++||++.. +++....+... -.-+.++|+|+.+.+++|. ..|.+++||..+...+..
T Consensus 377 ~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 377 NYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred chhhhccC----CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 99999875 788999999864 45555544322 1345689999999999975 457899999999999999
Q ss_pred EeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 623 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 623 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
+.... ..|..+.|+|.-+.|++|+.||++++|=
T Consensus 453 i~i~~--aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 453 IDIST--ASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ecCCC--ceEEEEeecchhhheeeecCCCceEEEE
Confidence 88763 3789999999988999999999999874
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=245.48 Aligned_cols=293 Identities=19% Similarity=0.261 Sum_probs=238.9
Q ss_pred CCCCee---EEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCC
Q 001176 342 QGSNVM---SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 418 (1132)
Q Consensus 342 h~~~V~---~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 418 (1132)
|...|. ++..++.+.++|++|+.||.|++|++........ .+ -.+.+..|.++|+.++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCCC
Confidence 444555 5566655545899999999999999875433211 11 1123667999999999999999
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEE-ecCCCcEEEEEEcCCCcEEEEECCCCe--EEEE------
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-AHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYT------ 489 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~-s~d~~~~~l~s~~~dg~v~vwd~~~~~--~~~~------ 489 (1132)
.|++++.|.+|++|+...+. -.+..++..|.+.|.|+++ .++.. ++||||-|+.|.+||+.++. .+.+
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998874 2344478889999999999 66666 89999999999999999883 2322
Q ss_pred --ec-CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001176 490 --FE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 566 (1132)
Q Consensus 490 --~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1132)
+. |+...|++++.++.+ ..+++|+..+.+++||.++.+.+..+.+|...|..+..+.||+.+++++. |++|
T Consensus 164 ~sl~sG~k~siYSLA~N~t~--t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtI 237 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTG--TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTI 237 (735)
T ss_pred ccCCCCCccceeeeecCCcc--eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceE
Confidence 33 788999999987654 89999999999999999999999999999999999999999999999986 8899
Q ss_pred EEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEE
Q 001176 567 VEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAV 646 (1132)
Q Consensus 567 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1132)
++||+...+++.++..|.. .+.++..+|+-..+++|+.||.|+.=|+++......+-... .+|..+..+.+.+-+-+
T Consensus 238 rlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~~Wv 314 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNSVWV 314 (735)
T ss_pred EeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCCcee
Confidence 9999999999999999998 69999999999999999999999999998843322222222 26777777765555577
Q ss_pred EeCCCcEEEEEcC
Q 001176 647 TTSDNGIKILANS 659 (1132)
Q Consensus 647 ~~~dg~i~iw~~~ 659 (1132)
++.|+.|+-|...
T Consensus 315 tTtds~I~rW~~~ 327 (735)
T KOG0308|consen 315 TTTDSSIKRWKLE 327 (735)
T ss_pred eeccccceecCCc
Confidence 8899999999764
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=5.8e-27 Score=236.31 Aligned_cols=253 Identities=19% Similarity=0.268 Sum_probs=213.0
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|-.++|+++.|.++++ .+++.+.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 56799999999999999999999999999999998876 223346778888999999999999 788899999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+.+.+...+|.||.+.|+++.|.-.. ..+++|+.|.+|+.||+....+..... ....+..++.+ ...++++-.
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 99999999999999999999986554 449999999999999999866655433 23344455554 344555543
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC--CCCCcceEEEc
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG--GLPASPRLRFN 638 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~s 638 (1132)
|..|++||.++..+......+. .|+++..++++..+++.+.|..+.+.|+++.+....+...+ .....+.+.||
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 6779999999999999888766 79999999999999999999999999999998888876542 22357899999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 639 KEGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
|++.|+++|+.||.|+||++.++ ++...+
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg-KlE~~l 425 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG-KLEKVL 425 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc-eEEEEe
Confidence 99999999999999999999988 555444
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=8.9e-26 Score=231.35 Aligned_cols=297 Identities=14% Similarity=0.233 Sum_probs=235.3
Q ss_pred Eeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeec----ccccccccccccCCCCcCeEEEE
Q 001176 338 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI----SAASMPLQNALLNDAAISVNRCV 412 (1132)
Q Consensus 338 ~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~v~ 412 (1132)
..+. |.-+|.||+++||++ +.++++.+++|.=|++.+|+.... +|.- .....+....- .+|...|.+++
T Consensus 136 ~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~a 209 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLA 209 (479)
T ss_pred eeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEE
Confidence 3444 889999999999999 599999999999999999975421 1111 10112222222 48999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC
Q 001176 413 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 492 (1132)
Q Consensus 413 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 492 (1132)
.|+||+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++.+
T Consensus 210 vS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyG 284 (479)
T KOG0299|consen 210 VSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYG 284 (479)
T ss_pred EcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhC
Confidence 99999999999999999999999988766 5889999999999987666 689999999999999999999999999
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
|+..|.+|...... ..+.+|+.|+++++|++. ......+.++.+.+-|++|-.+ ..+++|+. +|.|.+|++.
T Consensus 285 Hqd~v~~IdaL~re--R~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~ 356 (479)
T KOG0299|consen 285 HQDGVLGIDALSRE--RCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLL 356 (479)
T ss_pred Cccceeeechhccc--ceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeec
Confidence 99999999765433 556666699999999994 4555677778889999999665 56677764 8889999999
Q ss_pred CCceeeeeccccC-----------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCC----eeEEEEeCCCCCCCcceEEE
Q 001176 573 EGAIKRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLRF 637 (1132)
Q Consensus 573 ~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~ 637 (1132)
..+++.+....+. ..|++++..|..+.+++|+.+|.|++|-+..+ +++..+.. .+.|++++|
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f 433 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAF 433 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEE
Confidence 9888876643211 16889999999999999999999999998876 44555553 346999999
Q ss_pred cCCCCEEEEE-eCCCcEEEE
Q 001176 638 NKEGSLLAVT-TSDNGIKIL 656 (1132)
Q Consensus 638 s~~~~~l~~~-~~dg~i~iw 656 (1132)
+++|+.+++| +....+--|
T Consensus 434 ~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 434 SNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ccCCCEEEEeccccccccee
Confidence 9999966665 334344334
No 98
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=8.7e-25 Score=248.11 Aligned_cols=237 Identities=12% Similarity=0.128 Sum_probs=185.8
Q ss_pred cCCCCcCeEEEEEcCC-CCeEEEEeCCCeEEEEEecCCCc-e----eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC
Q 001176 401 LNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGE-L----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 474 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spd-g~~las~~~dg~i~iwd~~~~~~-~----~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg 474 (1132)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. . .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence 6789999999999996 78999999999999999986432 1 122357789999999999999874 568999999
Q ss_pred cEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEE-----EEEEcCC
Q 001176 475 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCT-----MMAYSAD 549 (1132)
Q Consensus 475 ~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~-----~~~~s~~ 549 (1132)
+|+|||+.+++.+..+. |...|.+++|+++ |.+|++++.|+.|++||++++.....+.+|.+.+. ...|+++
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~~V~Slswspd--G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNIK--GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCCcEEEEEECCC--CCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 99999999999887776 6678999999875 48999999999999999999988888888876543 2345689
Q ss_pred CCEEEEEecCCCCCCeEEEEeCCC-CceeeeeccccCC-ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC
Q 001176 550 GTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 627 (1132)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1132)
+.++++++.++..+++|++||++. ++++..+..+... .+......+++.++++|+.|+.|++|++..+. +..+....
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~ 304 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYK 304 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccc
Confidence 999999887554457899999985 5666555433321 22333334557888899999999999998764 44444444
Q ss_pred CCCCcceEEEcCCCC
Q 001176 628 GLPASPRLRFNKEGS 642 (1132)
Q Consensus 628 ~~~~v~~~~~s~~~~ 642 (1132)
...++.+++|.|+..
T Consensus 305 s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 305 SCSPFRSFGFLPKQI 319 (568)
T ss_pred cCCCccceEEccccc
Confidence 455788999999653
No 99
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=1.8e-24 Score=228.45 Aligned_cols=609 Identities=14% Similarity=0.170 Sum_probs=339.1
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
-+..|. |.+.|+.+.|||-...|||+|+.|..|+||.+..|-... .......+.+..-.|-|+.|+
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fH 137 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFH 137 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecc
Confidence 455566 999999999999766799999999999999998543211 111222355556688999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC-CeEEEEecCC
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGH 493 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h 493 (1132)
|..+-|...+..|+++|||+.+++.+. ++.+|.+.|.++.|+.||+ ++++.+.|+.|+|||.+. ++.++..++|
T Consensus 138 pTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 138 PTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred cCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccc
Confidence 977666666688999999999987655 7889999999999999999 999999999999999874 6778888888
Q ss_pred CCC-eEEEEeeccCCccEEEEEecC----CeEEEEEcCCCCce-EEecCC-CCeEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001176 494 EAP-VYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSR-VDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHL 566 (1132)
Q Consensus 494 ~~~-v~~i~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~-~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1132)
.+. -..+.|.. +-..|++.+.+ ..|++||.+.-... ..+... ...|.---|.||.++|+.++ .++..+
T Consensus 213 ~~~rdsRv~w~G--n~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~l 287 (1012)
T KOG1445|consen 213 GGMRDSRVLWAG--NWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNKL 287 (1012)
T ss_pred ccchhheeeecc--chhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcceE
Confidence 754 22344533 33567666654 46899998765432 222222 12444556889999988876 367788
Q ss_pred EEEeCCCCceee--ee----------------------ccccC-------Cce-EEE---------EEeCCCCEEEE-EE
Q 001176 567 VEWNESEGAIKR--TY----------------------SGFRK-------RSL-GVV---------QFDTTRNRFLA-AG 604 (1132)
Q Consensus 567 ~~wd~~~~~~~~--~~----------------------~~~~~-------~~v-~~~---------~~~~~~~~l~~-~~ 604 (1132)
+.+.+...++.. .+ .+.-. ..| -.. .|+.|- +==+ |.
T Consensus 288 ~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DL-fPeT~G~ 366 (1012)
T KOG1445|consen 288 FMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDL-FPETRGA 366 (1012)
T ss_pred EEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhh-CccccCC
Confidence 888875433210 00 00000 000 000 011100 0000 00
Q ss_pred cCC-eEEEEECCCCeeEEEEe------CCC----------------CC-------------CCcceEEE-cCC-CCEEEE
Q 001176 605 DEF-QIKFWDMDNMNMLTTVD------ADG----------------GL-------------PASPRLRF-NKE-GSLLAV 646 (1132)
Q Consensus 605 ~dg-~i~iwd~~~~~~~~~~~------~~~----------------~~-------------~~v~~~~~-s~~-~~~l~~ 646 (1132)
.-+ ...-|=-.+.+.++... .|+ .. ..++++.= -|| ...=++
T Consensus 367 ~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV 446 (1012)
T KOG1445|consen 367 EPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAV 446 (1012)
T ss_pred ccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCc
Confidence 000 00001001111111000 000 00 00000100 011 000000
Q ss_pred EeCCCcEEEEE------------------cCCcc-eeeeecc-------ccccccccCCCCCCCCCcccccc--------
Q 001176 647 TTSDNGIKILA------------------NSDGV-RLLRMLE-------GRAMDKNRCPSEPISSKPLTINA-------- 692 (1132)
Q Consensus 647 ~~~dg~i~iw~------------------~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-------- 692 (1132)
. ....++-.+ ...+. ....... ...........+.....+|+|.-
T Consensus 447 ~-~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~ 525 (1012)
T KOG1445|consen 447 P-KKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPV 525 (1012)
T ss_pred C-cchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCc
Confidence 0 000000000 00000 0000000 00000000000000000111100
Q ss_pred -----cCCCccccccccCCCCCCC--CCCCCcccC------------------ccCcCCccccccccc---ccccccCce
Q 001176 693 -----LGPASNVSAAIAPTLERPD--RGPPAVSIS------------------SLGTIDGSRLVDVKP---RVAEDVDKI 744 (1132)
Q Consensus 693 -----~g~~~~~~~~~~~~~~~~~--~~~~~~~~~------------------~~~~~~~~~~~~~~~---~~~~~~~~v 744 (1132)
.+....++..-...+..+- .....++.+ .+.+....+..+.+. -+++..|.|
T Consensus 526 ~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~i 605 (1012)
T KOG1445|consen 526 NFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVI 605 (1012)
T ss_pred ccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceE
Confidence 0000000000000000000 001111111 111111111222222 233556899
Q ss_pred eeeecCCCCCCCcceEEecCCcccccceEEEEEec-CCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCc
Q 001176 745 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSG 823 (1132)
Q Consensus 745 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~ 823 (1132)
.+|++.. ++..-.-.++.-.....|+.+.|.| |..+|++++.||.|++|.+..+.......
T Consensus 606 ai~el~~---PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~--------------- 667 (1012)
T KOG1445|consen 606 AIYELNE---PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM--------------- 667 (1012)
T ss_pred EEEEcCC---CCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC---------------
Confidence 9999986 2333333344444667899999998 77889999999999999987543321111
Q ss_pred CcccccCCCCCCCCCCeeEEEEee-CCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCC
Q 001176 824 TLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 901 (1132)
Q Consensus 824 ~~~~~~~~~~~h~~~~v~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg 901 (1132)
.....+.. | ...|+.+.|+| -...|++++ |-+|++||+.+++....+.+|.+.|..++||| +|+.+|+.+.||
T Consensus 668 -tPe~~lt~--h-~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg 742 (1012)
T KOG1445|consen 668 -TPEKILTI--H-GEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDG 742 (1012)
T ss_pred -Ccceeeec--c-cceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCc
Confidence 01111333 7 88999999999 455778887 99999999999999999999999999999999 999999999999
Q ss_pred cEEEEEcccce-eeeeeccc-cCCeeEEEEcCCCCEEEEEcCC----CcEEEEECCCccc--ccceeeeCCCCCCCCCCC
Q 001176 902 SVQIYNVRVDE-VKTKLKGH-QNRITGLAFSPTLNALVSSGAD----AQLCMWSIDKWEK--LKSRFIQAPAGRQSPLVG 973 (1132)
Q Consensus 902 ~v~iwd~~~~~-~~~~l~~h-~~~V~~l~~spdg~~l~s~~~D----~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~ 973 (1132)
+|++|+-.+++ .+..-.+. ..+--.+.|.-||++++..|.| .+|.+||.++-.. +....+.... .
T Consensus 743 ~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-------s 815 (1012)
T KOG1445|consen 743 TLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-------S 815 (1012)
T ss_pred eEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC-------c
Confidence 99999987764 33322221 1233457888899999988876 4588888876331 1111111111 1
Q ss_pred ceeEEECCCCcEEEE-E-eCCeEEEEeC
Q 001176 974 ETKVQFHNDQTHLLV-V-HESQISVYDS 999 (1132)
Q Consensus 974 v~~~~~s~dg~~l~~-~-~d~~v~vwd~ 999 (1132)
+.--.+.+|...|+. + .|..|.+|.+
T Consensus 816 ~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 816 PLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred cccccccCCCceEEEecCCCceEEEEEe
Confidence 222345677776666 4 6889999998
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.9e-26 Score=220.81 Aligned_cols=298 Identities=15% Similarity=0.198 Sum_probs=245.9
Q ss_pred ccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 333 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 333 ~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
..++++.+. |+++||.++-..... ++.+++.|.+.+||.+++|.++.+ +.||.+.|++|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsi 196 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSI 196 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeE
Confidence 445666777 999999999988776 899999999999999999999875 78999999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEe------cCC-------------------------------CceeeeeeeecccCCEE
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTY------NPT-------------------------------GELRQHLEIDAHVGGVN 454 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~------~~~-------------------------------~~~~~~~~l~~h~~~v~ 454 (1132)
+|++.+.++++++.|++.+||.. ... ..-.+...+.+|.+.|.
T Consensus 197 kfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~ 276 (481)
T KOG0300|consen 197 KFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVS 276 (481)
T ss_pred EeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceE
Confidence 99999999999999999999972 110 00113446889999999
Q ss_pred EEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCC-ceEE
Q 001176 455 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVD 533 (1132)
Q Consensus 455 ~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~ 533 (1132)
+..|...|+ .+++++.|++..+||+++|+.+..+.||....+.++-+|.. .++++.+.|.+.++||++..- .+..
T Consensus 277 a~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~V 352 (481)
T KOG0300|consen 277 ACDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAV 352 (481)
T ss_pred ehhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeee
Confidence 999999999 69999999999999999999999999999999999988876 899999999999999998533 3457
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc-eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 001176 534 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 612 (1132)
Q Consensus 534 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 612 (1132)
+.+|...|+++.|..+. .+++++. |.+|++||+++.+ ++.++.... +++.++.+..+..++.--.+..|++|
T Consensus 353 FQGHtdtVTS~vF~~dd-~vVSgSD----DrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlf 425 (481)
T KOG0300|consen 353 FQGHTDTVTSVVFNTDD-RVVSGSD----DRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLF 425 (481)
T ss_pred ecccccceeEEEEecCC-ceeecCC----CceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEE
Confidence 89999999999998775 4566653 8889999998654 566665433 68889999887888888889999999
Q ss_pred ECCCCeeEEEE--eCCCCCCCcceEEEcCCC--CEEEEEeCCCcEEEEEcCCc
Q 001176 613 DMDNMNMLTTV--DADGGLPASPRLRFNKEG--SLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 613 d~~~~~~~~~~--~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|++..++.... ...++...|.|++|..+. .-|++++.|..+.-|++...
T Consensus 426 DlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 426 DLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99765543322 223445578999998654 35889999999999998654
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=3.9e-25 Score=224.31 Aligned_cols=284 Identities=15% Similarity=0.207 Sum_probs=245.0
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
.+++++...|... .+.+|+.|..+.++|..+++.+.. +.||.-.|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 4789999999854 689999999999999999887764 88999999999999999999999
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC--CCCCeEEEE
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVC 501 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--h~~~v~~i~ 501 (1132)
+.|..|+||......... ....|.++|+.+...|.|. +|++++.|++..+.|+++|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998876444 4678999999999999999 899999999999999999998876653 334589999
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
|+|++ .++.+|..|+.|++||+.+......+.+|.++|..++|+.+|-+|+++.. |+.|++||++..+...++.
T Consensus 355 fHpDg--Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHPDG--LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcCCc--eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 98855 89999999999999999999999999999999999999999999999985 6679999999988888887
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 582 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
......+.++.|.+.|.+++.+|.|=.|++++-.+.........+.+.+..+++.|..+.+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 76655799999999999999998887777777555443333333333446789999999999999999999888754
No 102
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.6e-25 Score=240.33 Aligned_cols=284 Identities=15% Similarity=0.298 Sum_probs=240.6
Q ss_pred cceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEE-E
Q 001176 334 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR-C 411 (1132)
Q Consensus 334 ~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v 411 (1132)
.+..+.+. |.+.|..+++.+.. .++++|.||++++|+-..++.+... .+.+|.+.|.+ +
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~-----------------~~~~~~g~i~~~i 64 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETH-----------------AFEGPKGFIANSI 64 (745)
T ss_pred ceeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccce-----------------ecccCcceeeccc
Confidence 34566777 99999999988887 4888999999999998776655421 25578888887 8
Q ss_pred EEcC-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe
Q 001176 412 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 490 (1132)
Q Consensus 412 ~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 490 (1132)
++-+ ++-.|++|+.|++|.+|...+...+. .|.+|...|.|++...++. ++|||.|.++++|. .+++...+
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l 136 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSL 136 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhccc
Confidence 8886 55579999999999999999887655 7999999999999877775 89999999999996 56677789
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
.+|...|++++.-|. +.++|||.|.+|++|. .++....+.+|...|+.+++-+++. +++|+ +||.|++|+
T Consensus 137 ~gH~asVWAv~~l~e---~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~-flScs----NDg~Ir~w~ 206 (745)
T KOG0301|consen 137 QGHTASVWAVASLPE---NTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH-FLSCS----NDGSIRLWD 206 (745)
T ss_pred CCcchheeeeeecCC---CcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC-eEeec----CCceEEEEe
Confidence 999999999998765 4899999999999995 4677889999999999999988765 45665 489999999
Q ss_pred CCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 571 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
+ +|+.+..+.+|.. -+.++...+++..++++|+|++++||+.. ++.+.+..+.- .|+++.+-++|. +++|+.|
T Consensus 207 ~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SD 279 (745)
T KOG0301|consen 207 L-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSD 279 (745)
T ss_pred c-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccC
Confidence 9 7999999999998 89999988888999999999999999976 77888877643 689999988886 6779999
Q ss_pred CcEEEEEcCCc
Q 001176 651 NGIKILANSDG 661 (1132)
Q Consensus 651 g~i~iw~~~~~ 661 (1132)
|.||||.....
T Consensus 280 G~VrVfT~~k~ 290 (745)
T KOG0301|consen 280 GRVRVFTVDKD 290 (745)
T ss_pred ceEEEEEeccc
Confidence 99999987643
No 103
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=5.7e-25 Score=249.38 Aligned_cols=250 Identities=16% Similarity=0.192 Sum_probs=203.6
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCce----------eeeeeeecccCCEEEEEEec-CCCcEEEEEEcC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGD 472 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~----------~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~ 472 (1132)
|-..|.....++|+..+++++.+.....|+..++..+ .....+.+|.+.|.+++|+| ++. +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3445667777788777888888887888876554322 11124779999999999999 777 8999999
Q ss_pred CCcEEEEECCCC-------eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEE
Q 001176 473 DKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 545 (1132)
Q Consensus 473 dg~v~vwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1132)
|++|++||+.++ +++..+.+|...|.+++|+|..+ .+|++++.|++|++||+.++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 35678899999999999998643 6999999999999999999888888888999999999
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE----cCCeEEEEECCCCe-eE
Q 001176 546 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN-ML 620 (1132)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 620 (1132)
|+|+|++|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. ++
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999975 888999999999999999888764556678999888888765 47999999998754 33
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCc
Q 001176 621 TTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 661 (1132)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~ 661 (1132)
.....+. ...+....|++++++|++++ .|+.|++||+.++
T Consensus 252 ~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 252 STVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred eEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 3333332 22455667899999999887 5999999999987
No 104
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1e-26 Score=230.37 Aligned_cols=287 Identities=13% Similarity=0.187 Sum_probs=233.7
Q ss_pred EEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 337 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 337 ~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
+..|. |.++|.|++=+|..-..+|+|+.||.|+|||+.+.+++.+ +..|.+.|..|++..
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ 119 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc
Confidence 33445 9999999999998844799999999999999999887764 678999999999977
Q ss_pred CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
..+++++.|.+|+.|.++.. ..+ ++.+ ...+..+.-+..+. .++|||. .|.|||.+...++..+.--..
T Consensus 120 --~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~D 188 (433)
T KOG0268|consen 120 --TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGAD 188 (433)
T ss_pred --cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCC
Confidence 77889999999999998873 222 3332 34566666666566 7899886 589999999999999988888
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC-
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG- 574 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~- 574 (1132)
.|.++.|+|... .+|++++.|+.|.+||++...++..+.. ...-+.++|+|.+-.++++. +|..++.+|++..
T Consensus 189 ti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 189 SISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLS 262 (433)
T ss_pred ceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhc
Confidence 999999999865 7899999999999999999887665432 23456889999766666664 4888999999864
Q ss_pred ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001176 575 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 654 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1132)
.++..+.+|.. .|..++|+|.|+.+++||.|.+|+||..+.+.......... ...|.++.|+.|.+++++|++|+.|+
T Consensus 263 ~p~~v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR-Mq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 263 RPLNVHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR-MQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred ccchhhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-hheeeEEEEeccccEEEecCCCccee
Confidence 56777888877 89999999999999999999999999998876554432211 23689999999999999999999999
Q ss_pred EEEcCCc
Q 001176 655 ILANSDG 661 (1132)
Q Consensus 655 iw~~~~~ 661 (1132)
+|...-.
T Consensus 341 lWka~As 347 (433)
T KOG0268|consen 341 LWKAKAS 347 (433)
T ss_pred eeecchh
Confidence 9987543
No 105
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=7.4e-25 Score=213.71 Aligned_cols=269 Identities=20% Similarity=0.271 Sum_probs=216.9
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
..+.|++|.|+|.+.. |++++.||++++||+...+... .-.|+.++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 4578999999999885 5556799999999998875443 224999999999986 56788
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+|+.||.|+.+|+.++.... +..|..+|.|+.+++... .+++||.|++|++||.+......++. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987553 678999999999998777 79999999999999998755555554 334788886
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC----c
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG----A 575 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~----~ 575 (1132)
. .++.|+.|+.|..+.+||+++......... -.-.+.++++.|++.-.++++. +|+|.+=.++.. +
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQS 214 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhh
Confidence 5 347899999999999999998776553222 2237899999998877777765 666776655544 3
Q ss_pred eeeeeccccCC--------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001176 576 IKRTYSGFRKR--------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 576 ~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 647 (1132)
....|+.|... +|++++|+|-.+.|++||.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||++
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEE
Confidence 44566666432 6889999999999999999999999999999888887655 3369999999999999998
Q ss_pred eC
Q 001176 648 TS 649 (1132)
Q Consensus 648 ~~ 649 (1132)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 75
No 106
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=4.2e-25 Score=250.03 Aligned_cols=242 Identities=20% Similarity=0.289 Sum_probs=212.2
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
+...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. .+++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56678888887 67899999999999999999876653 3889999999999987455 899999999999999999
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
|.+.+.+.+|...|.++...+ ..+++|+.|.+|++|++.++..+..+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 999999999999999998643 678899999999999999999999999999999999998 789999986 7
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-eeEEEEeCCCCCCCcceEEEcCCCC
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGS 642 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1132)
+.|.+||+.+++++.++.+|.. .|.++.+.+. +++++|+.|+.|++||+.+. +++.++..|.. -+..+. ..++
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--~v~~l~--~~~~ 424 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--LVSSLL--LRDN 424 (537)
T ss_pred ceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc--cccccc--cccc
Confidence 7899999999999999999887 8999988765 89999999999999999999 99999988865 344443 4578
Q ss_pred EEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 643 LLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
+|++++.|++|++||..++ .+.+.+
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~-~~~~~~ 449 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEG-ECLRTL 449 (537)
T ss_pred eeEeccccccEEEeecccC-ceeeee
Confidence 9999999999999998887 444433
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.1e-26 Score=242.12 Aligned_cols=242 Identities=19% Similarity=0.225 Sum_probs=207.6
Q ss_pred EEEEcC-CCCeEEEEeCCCeEEEEEecCCCce---eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-
Q 001176 410 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG- 484 (1132)
Q Consensus 410 ~v~~sp-dg~~las~~~dg~i~iwd~~~~~~~---~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~- 484 (1132)
.+..++ .+++|.+||.||.|++|++...... .....++.|.+.|++++...+++ .|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 444444 6778999999999999998754331 12336788999999999999998 7999999999999999887
Q ss_pred -eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc--eE--------Eec-CCCCeEEEEEEcCCCCE
Q 001176 485 -RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RV--------DYD-APGNWCTMMAYSADGTR 552 (1132)
Q Consensus 485 -~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~--------~~~-~~~~~v~~~~~s~~~~~ 552 (1132)
-++.++..|.+-|.++++- ..+...+++|+.|+.|.+||++++.. .. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 5778899999999999983 23448999999999999999997633 11 122 55668999999999988
Q ss_pred EEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001176 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
+++|+. .+.+++||.++++.+..+.||.+ .|.++..++||..+++++.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888876 55699999999999999999998 899999999999999999999999999999999999988865 69
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 633 PRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999999888775
No 108
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3e-25 Score=227.47 Aligned_cols=251 Identities=19% Similarity=0.239 Sum_probs=213.7
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeee--------------eee-ecccCCEEEEEEecCCCcE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH--------------LEI-DAHVGGVNDIAFAHPNKQL 465 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~--------------~~l-~~h~~~v~~v~~s~d~~~~ 465 (1132)
+..|.-+|.|++++||++++.+++.+++|.=|++.++...+-. ..- .+|...+.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 4569999999999999999999999999999999887643100 011 27888999999999999
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEE
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 545 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1132)
+|++|+.|..|.|||.++.+.++.+++|.+.|.+++|-... .-+++++.|++|++|+++....+.++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 89999999999999999999999999999999999997655 7899999999999999999888889999999999999
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeC
Q 001176 546 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1132)
...-++.+-+++. |+++++|++.. +....|.++.. .+.|++|-. ..++++|+.+|.|.+|++...+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 8888877777765 88899999953 33345666655 789999875 46899999999999999999998877653
Q ss_pred CCC----------CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcc
Q 001176 626 DGG----------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 626 ~~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
..+ ...|++++..|...++++|+.+|.|++|.+.++.
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 211 1257899999999999999999999999998873
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.2e-24 Score=196.90 Aligned_cols=302 Identities=14% Similarity=0.117 Sum_probs=228.9
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcC-----cccccCCCCCCCCCCeeE
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT-----LMTNDINESKPTEESAAC 842 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~h~~~~v~~ 842 (1132)
....|++++|.|.|...++++...++++...+.. -++..+. +.....+...|+.+.|+|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l----------------~~~r~~hea~~~pp~v~~kr~khhkgsiyc 94 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPAL----------------IDLRHAHEAAKQPPSVLCKRNKHHKGSIYC 94 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccc----------------cCcccccccccCCCeEEeeeccccCccEEE
Confidence 4567999999999999999999999998755321 1111111 111111222233999999
Q ss_pred EEEeeCCCEEEEee-CCeEEEEECCCCeE-----EEEeeCCCCCeEEEEEeCC---CCCeEEEEe-CCCcEEEEEcccce
Q 001176 843 IALSKNDSYVMSAS-GGKVSLFNMMTFKV-----MTMFMSPPPAATFLAFHPQ---DNNIIAIGM-EDSSVQIYNVRVDE 912 (1132)
Q Consensus 843 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~sp~---~~~~lasg~-~dg~v~iwd~~~~~ 912 (1132)
.+|||+|.++|+|+ |.+|++..+....+ -..|.-|.+.|..++|-.+ ++.+|++++ .|..|++-|..+|+
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 99999999999999 88898876543222 2456779999999999642 467888765 56788888999999
Q ss_pred eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eC
Q 001176 913 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HE 991 (1132)
Q Consensus 913 ~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d 991 (1132)
....+.+|.+.|.++ ++-+|-++++|+.|.+|++||+.-..+....-.....+. -....|.+++..|.|++|+++ .|
T Consensus 175 ~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g-lessavaav~vdpsgrll~sg~~d 252 (350)
T KOG0641|consen 175 GFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG-LESSAVAAVAVDPSGRLLASGHAD 252 (350)
T ss_pred cceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC-cccceeEEEEECCCcceeeeccCC
Confidence 999999999999886 345788999999999999999987553332111111111 112678999999999999997 68
Q ss_pred CeEEEEeCC-CCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCc
Q 001176 992 SQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHP 1070 (1132)
Q Consensus 992 ~~v~vwd~~-~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 1070 (1132)
....+||+. +..+..+ +.|+..|.++.|||...++++++.|..|++-|+.. .+-. .+|..++..|...+
T Consensus 253 ssc~lydirg~r~iq~f---~phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~------el~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRF---HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAH------ELPIMVVAEHKDKA 322 (350)
T ss_pred CceEEEEeeCCceeeee---CCCccceeEEEeCCCceEEEEecccceEEEeeccc-chhh------cCceEEEEeccCce
Confidence 899999994 4555554 55699999999999999999999999999999983 3322 24555667888999
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1071 LVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1071 ~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
+.+.|+|++ --+++.+.|.++.+|-+.
T Consensus 323 i~~rwh~~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 323 IQCRWHPQD-FSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEecCcc-ceeeeccCcceEEEeccC
Confidence 999999944 678889999999999764
No 110
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.7e-25 Score=246.14 Aligned_cols=274 Identities=17% Similarity=0.248 Sum_probs=209.3
Q ss_pred ccccceEEEEEecCCceEEeecccceeEEEeeccccC------C------------------CCCccccccc--------
Q 001176 767 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER------N------------------PSGKATANVA-------- 814 (1132)
Q Consensus 767 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~------~------------------~~~~~~~~~~-------- 814 (1132)
.|.+.|.++.|++||++|++++.|+.|+||.+...+. . ..........
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5899999999999999999999999999999876110 0 0000000000
Q ss_pred -c-ccccCCCcC---cccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeC
Q 001176 815 -P-QLWQPPSGT---LMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 888 (1132)
Q Consensus 815 -~-~l~~~~~~~---~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 888 (1132)
. .+.+..... .....+.| | ...|..+.||.++ +|++++ |.+||+|++...++++.|. |.+-||||+|+|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~G--H-t~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKG--H-TADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred CccccCCCccccccccchhhhhc--c-chhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 0 011111111 11112444 8 9999999999765 566666 9999999999999999998 999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCC
Q 001176 889 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ 968 (1132)
Q Consensus 889 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 968 (1132)
.|.+++++|+-||.||||++...+.+.-...+ .-|++++|.|||+..+.|+-+|.+++|++...+......+....+..
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999999999999999988877665555 77999999999999999999999999999987766555555554444
Q ss_pred CCCCCceeEEECCCCc--EEEEEeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 969 SPLVGETKVQFHNDQT--HLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 969 ~~~~~v~~~~~s~dg~--~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
.....|+.+.|.|... .|+++.|..|+|||. +...+..+...+. ...-.+..|+.||++|+++++|..|+||++..
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 3334699999987654 777799999999999 5555555543332 33445678999999999999999999999854
Q ss_pred cc
Q 001176 1046 LR 1047 (1132)
Q Consensus 1046 ~~ 1047 (1132)
..
T Consensus 578 ~~ 579 (712)
T KOG0283|consen 578 FN 579 (712)
T ss_pred Cc
Confidence 43
No 111
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.2e-24 Score=210.99 Aligned_cols=249 Identities=16% Similarity=0.180 Sum_probs=196.1
Q ss_pred CCCCcCeEEEEEcC-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 402 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 402 ~~h~~~V~~v~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
...++.|.+++||| ...++++++.|++||+|+++....... .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678999999999 556777899999999999987433322 34567999999999999998 799999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+.+++ +..+..|.++|..+.|.+...-..|+|||.|++|++||.+...++..+.... +++++.. -..+++++..
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA-- 174 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec--
Confidence 99995 5677789999999999887766799999999999999999888887776544 3444433 2345555543
Q ss_pred CCCCeEEEEeCCCCc-eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC--eeEEEEeCCCC-------CC
Q 001176 561 EGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGG-------LP 630 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~ 630 (1132)
++.|.+|+++.+. ..+.......-.++|++..++....+.|+-+|.+-|..++.+ +.-..++.|.. .-
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 6679999997653 223333333336899999999988899999999999999876 33344555542 23
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 631 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.|++++|+|.-..|++++.||++.+||-...
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh
Confidence 5788999998889999999999999997654
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.1e-24 Score=209.32 Aligned_cols=243 Identities=18% Similarity=0.249 Sum_probs=206.0
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+..|.++|+++|. +|.++|+|+.|-+|+|||+.+..++. .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|+
T Consensus 39 ~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 39 FSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 5679999999999 68999999999999999999987666 566799999999999876422589999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
...-.++.++++|.+.|+.++++|++ .+.++.+.|+.+++||+-.++.-........ -+.+.|+|.|.+++..+
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~--- 187 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG--- 187 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe---
Confidence 99999999999999999999999977 8999999999999999988876665544332 34499999999888876
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE--c
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF--N 638 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s 638 (1132)
...|-+|.+.+......+.... .+.++.|. ++..+++|+.|+.|.+||.++..+...+..|.. .|..+.+ .
T Consensus 188 --~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~~ 260 (362)
T KOG0294|consen 188 --RNKIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYTN 260 (362)
T ss_pred --ccEEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEec
Confidence 3459999998877666555432 46666665 467899999999999999999999999988855 7888874 4
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCc
Q 001176 639 KEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|++.+|++++.||.|++||+...
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCceEEEEeccCceEEEEEcccc
Confidence 57899999999999999999765
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=7.6e-26 Score=224.24 Aligned_cols=287 Identities=17% Similarity=0.265 Sum_probs=228.9
Q ss_pred eeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEE
Q 001176 445 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 524 (1132)
Q Consensus 445 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd 524 (1132)
.|.||.+.|.|++=+|..-. .++||+.||.|++||+.+..++.+|+.|.+.|.+|++.. ..+++++.|.+|+.|.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998733 699999999999999999999999999999999999865 5799999999999998
Q ss_pred cCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCE-EEEE
Q 001176 525 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR-FLAA 603 (1132)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~ 603 (1132)
++.. ....+. ....+..+.-+..+..+++||. .|.|||.....++..+.-..+ .|.++.|+|.... |+++
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 7753 222222 2345566666667778888864 399999999999999987666 7999999998855 5556
Q ss_pred EcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCC
Q 001176 604 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 683 (1132)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1132)
+.|+.|.+||++.+.++..+.... .-+.++|+|++-.+++|+.|..++.+|...-...+....
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~-------------- 269 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK-------------- 269 (433)
T ss_pred ccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhhcccchhhc--------------
Confidence 699999999999999988876543 357899999998999999999999999875533222222
Q ss_pred CCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEec
Q 001176 684 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 763 (1132)
Q Consensus 684 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~ 763 (1132)
T Consensus 270 -------------------------------------------------------------------------------- 269 (433)
T KOG0268|consen 270 -------------------------------------------------------------------------------- 269 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEE
Q 001176 764 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 843 (1132)
Q Consensus 764 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~ 843 (1132)
+|.+.|.++.|||.|+.+++++-|.+|+||...... +..+.. .+. -..|.|+
T Consensus 270 ---dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~-------------------SRdiYh--tkR----Mq~V~~V 321 (433)
T KOG0268|consen 270 ---DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-------------------SRDIYH--TKR----MQHVFCV 321 (433)
T ss_pred ---ccceeEEEeccCCCcchhccccccceEEEeecCCCc-------------------chhhhh--Hhh----hheeeEE
Confidence 266788999999999999999999999999765311 111111 001 2358999
Q ss_pred EEeeCCCEEEEee-CCeEEEEECCCCeE
Q 001176 844 ALSKNDSYVMSAS-GGKVSLFNMMTFKV 870 (1132)
Q Consensus 844 ~~s~dg~~la~~s-dg~i~vwd~~~~~~ 870 (1132)
.||.|.+|+++|+ |+.|++|.....+.
T Consensus 322 k~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 322 KYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred EEeccccEEEecCCCcceeeeecchhhh
Confidence 9999999999999 79999999865443
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.1e-25 Score=212.38 Aligned_cols=331 Identities=12% Similarity=0.212 Sum_probs=249.9
Q ss_pred ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001176 575 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 654 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1132)
++++.+.||.+ .|..++.......+.+++.|.+.+||.++++.++.++.+|.+ .|+++.|++.+.++++++.|++..
T Consensus 139 ~lvre~~GHkD-GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKD-GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eehhhhccccc-ceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccccceEEEccCCcchH
Confidence 34567888888 788888777777888899999999999999999999998865 899999999999999999999999
Q ss_pred EEEcCCcceeeeec--cccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccc
Q 001176 655 ILANSDGVRLLRML--EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 732 (1132)
Q Consensus 655 iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1132)
||...-..+..... .+|+..
T Consensus 216 IW~~av~~~vP~~~a~~~hSsE---------------------------------------------------------- 237 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSE---------------------------------------------------------- 237 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCch----------------------------------------------------------
Confidence 99753221100000 000000
Q ss_pred cccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccc
Q 001176 733 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 812 (1132)
Q Consensus 733 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 812 (1132)
.. .-..|. + .+-..-....|| .+|++
T Consensus 238 eE--~e~sDe-------------------------~-~~d~d~~~~sD~---------~tiRv----------------- 263 (481)
T KOG0300|consen 238 EE--EEHSDE-------------------------H-NRDTDSSEKSDG---------HTIRV----------------- 263 (481)
T ss_pred hh--hhcccc-------------------------c-ccccccccccCC---------ceeee-----------------
Confidence 00 000000 0 000000000111 11221
Q ss_pred cccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCC
Q 001176 813 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 891 (1132)
Q Consensus 813 ~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 891 (1132)
....+.+ | ...|.+..|-..|+.+++++ |.+..+||+++++.+..+.||..+.+.+.-+| ..
T Consensus 264 -------------Pl~~ltg--H-~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQ 326 (481)
T KOG0300|consen 264 -------------PLMRLTG--H-RAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQ 326 (481)
T ss_pred -------------eeeeeec--c-ccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cc
Confidence 1122444 7 88999999999999999999 99999999999999999999999999999999 89
Q ss_pred CeEEEEeCCCcEEEEEcccc-eeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCC
Q 001176 892 NIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 970 (1132)
Q Consensus 892 ~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 970 (1132)
+++++.+.|.+.++||.... ..+..|+||.+.|+++.|.-| ..+++++.|.+|++||+.+-.... .....
T Consensus 327 rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRspl----ATIRt---- 397 (481)
T KOG0300|consen 327 RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPL----ATIRT---- 397 (481)
T ss_pred eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcc----eeeec----
Confidence 99999999999999999743 457789999999999999865 468999999999999998754221 11111
Q ss_pred CCCceeEEECCCCcEEEEE-eCCeEEEEeCCCCceeecC--CCCCCCCCeEEEEEccCC--CEEEEEecCCcEEEEeCCC
Q 001176 971 LVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWS--PKDALPAPISSAIYSCDG--LLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 971 ~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~--~~~~h~~~i~~i~~s~dg--~~las~~~dg~i~vwd~~~ 1045 (1132)
..++..++.+..+..+++- ++..|++||+++..+..+. ...+|..-|++++|+.+. .-|++++-|..+.=|++..
T Consensus 398 dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 398 DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 1467889999999899984 6688999999998887776 457889999999998654 3588889999999999876
Q ss_pred c
Q 001176 1046 L 1046 (1132)
Q Consensus 1046 ~ 1046 (1132)
.
T Consensus 478 p 478 (481)
T KOG0300|consen 478 P 478 (481)
T ss_pred c
Confidence 4
No 115
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.5e-24 Score=206.77 Aligned_cols=254 Identities=19% Similarity=0.249 Sum_probs=186.9
Q ss_pred ceEEEEEecCCceEEee-cccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC
Q 001176 771 KVVRLIYTNSGLSLLAL-ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 849 (1132)
Q Consensus 771 ~i~~~~~s~~g~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg 849 (1132)
..+.++|.||.+.+++. .....+++|.+...+. |..... ..-||-. .+ ...| .-.+..+-....+
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~--~v~~D~~-------~f-~~kh-~v~~i~iGiA~~~ 199 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHH--FVHIDNL-------EF-ERKH-QVDIINIGIAGNA 199 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCcc--ccccccc-------cc-chhc-ccceEEEeecCCc
Confidence 45788999998876654 4567899997754322 111100 0011100 01 1124 6667778888899
Q ss_pred CEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc---c-----eeeeeeccc
Q 001176 850 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV---D-----EVKTKLKGH 920 (1132)
Q Consensus 850 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h 920 (1132)
+++++++ |.+|.+|++. |+.+..+......-+..+.|| +|++||+++..-.|++|.+-- | ..+..++||
T Consensus 200 k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH 277 (420)
T KOG2096|consen 200 KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH 277 (420)
T ss_pred eEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc
Confidence 9999999 8899999998 888888887777778899999 999999999999999998752 2 234468999
Q ss_pred cCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccc--eeeeCC-CCCCCCCCCceeEEECCCCcEEEEEeCCeEEEE
Q 001176 921 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS--RFIQAP-AGRQSPLVGETKVQFHNDQTHLLVVHESQISVY 997 (1132)
Q Consensus 921 ~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~--~~~~~~-~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vw 997 (1132)
.+.|..++||++...++|++.||++++||++-.-...+ ..+... ............++++|.|+.|+++....+.+|
T Consensus 278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~ 357 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVF 357 (420)
T ss_pred hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEE
Confidence 99999999999999999999999999999864221111 112111 111111244568999999999999999999999
Q ss_pred eC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001176 998 DS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 998 d~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~ 1043 (1132)
.. +++....+. ..|...|++++|++||+++|+++ |..++++.-
T Consensus 358 ~se~g~~~~~~e--~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 358 ASEDGKDYPELE--DIHSTTISSISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred EcccCccchhHH--HhhcCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence 99 666555443 45699999999999999999988 888988763
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6.4e-25 Score=206.20 Aligned_cols=251 Identities=20% Similarity=0.297 Sum_probs=209.8
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec--CCCcEEEEEEcCCCcEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~--d~~~~~l~s~~~dg~v~v 478 (1132)
...|++.|.++...--|++||+|+.|++|+|+.++.+.......+|.||.++|+.++|.. -|. +|++++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 456999999999888999999999999999999998887677779999999999999987 677 9999999999999
Q ss_pred EECCCCeE--EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCeEEEEEEcCC---C
Q 001176 479 WDVVAGRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD---G 550 (1132)
Q Consensus 479 wd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~---~ 550 (1132)
|.-++|+- .+.+..|+..|++++|.|..-|-.|++++.||.|.+.+.+..+. ......|.-.|++++|.|. |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99887753 35667899999999999999999999999999999999887622 3355678889999999986 4
Q ss_pred -----------CEEEEEecCCCCCCeEEEEeCCCCc--eeeeeccccCCceEEEEEeCCC----CEEEEEEcCCeEEEEE
Q 001176 551 -----------TRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQIKFWD 613 (1132)
Q Consensus 551 -----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd 613 (1132)
+.|++++. |..|.+|+...++ ..+++.+|.+ .|+.++|.|.- .++++++.||++.||.
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 56888875 7789999988764 4456888888 89999999965 5799999999999998
Q ss_pred CCCC-e-eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 614 MDNM-N-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 614 ~~~~-~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
.+.. + ...++ .+.....+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 240 ~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 240 KDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 7632 1 11111 12223468999999999999999999999999754
No 117
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=2.2e-23 Score=236.68 Aligned_cols=228 Identities=14% Similarity=0.214 Sum_probs=182.8
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC-CCcEEEEEEcCCCcEEEEECCCCe--------EEEEecCC
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR--------KQYTFEGH 493 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d-~~~~~l~s~~~dg~v~vwd~~~~~--------~~~~~~~h 493 (1132)
|+.++.|++|+...... ...+.+|.+.|.+++|+|+ +. +|+||+.|++|+|||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 56688999999876543 3368899999999999997 56 89999999999999998642 34567899
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC
Q 001176 494 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 573 (1132)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1132)
...|.+++|+|... .++++++.|++|++||++++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999998652 456899999999999999888766665 4578999999999999998864 77899999999
Q ss_pred CceeeeeccccCCc----eEEEEEeCCCCEEEEEEcCC----eEEEEECCC-CeeEEEEeCCCCCCCcceEEEcCCCCEE
Q 001176 574 GAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEF----QIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLL 644 (1132)
Q Consensus 574 ~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1132)
++.+.++.+|.... +....|++++.+++++|.++ .|++||++. .+++..+..+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999987621 22234568899999988664 799999995 6677666655443333344445578899
Q ss_pred EEEeCCCcEEEEEcCCc
Q 001176 645 AVTTSDNGIKILANSDG 661 (1132)
Q Consensus 645 ~~~~~dg~i~iw~~~~~ 661 (1132)
++|+.|+.|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999766
No 118
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.9e-21 Score=210.95 Aligned_cols=277 Identities=15% Similarity=0.208 Sum_probs=221.7
Q ss_pred cCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
-|+.+-+.++|.|+|. ++++++.||.|++|+......... .+.-+...|.+++. ++.+|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIAC--YSNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEee--cccce
Confidence 3888999999999999 789999999999999876532110 02226777887776 55699
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
++|+.+++|.+|....++.-. .+...+-++++++|+.+|+ +++.||.|-.|++-++.+......+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999999876533 2334566899999999999 89999999999999999999999999999999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------C-CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------P-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
.++|.+ .+|++.+.||.|++||+.++.....+.. . ...+..++|+|+|..++..+. ++.|.+|+..
T Consensus 145 ~~~p~~--~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDPKG--NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcCCC--CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 998865 8999999999999999998776554432 1 346788999999766666554 7789999999
Q ss_pred CCceeeeeccccCC-ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCC
Q 001176 573 EGAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 651 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1132)
+......+...... .+.++.|+|+|.||++++.||.|.|||+++.+. |.....|.+++|.|+.+.+-.-...|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 99888887654332 488999999999999999999999999997222 33345789999999877665544444
Q ss_pred cEEE
Q 001176 652 GIKI 655 (1132)
Q Consensus 652 ~i~i 655 (1132)
...+
T Consensus 293 ~~~~ 296 (933)
T KOG1274|consen 293 TLGV 296 (933)
T ss_pred cccc
Confidence 4333
No 119
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=8.2e-24 Score=214.79 Aligned_cols=240 Identities=17% Similarity=0.259 Sum_probs=215.3
Q ss_pred cCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001176 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 485 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~ 485 (1132)
..+.++...|....+++|+.|..+.++|..+++.+. .+.||...|+.+.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 468888888888899999999999999999988666 6899999999999999998 89999999999999998888
Q ss_pred EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 486 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
.......|+.+|+.+..+|.+ .||++++.|++..+.|++++......... .-.+++.+|+|||..+.++.. |
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tg--eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTG--EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred CccccccccccceeeeeccCC--cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 778888999999999998866 89999999999999999999887766553 337899999999999998875 8
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCE
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 643 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 643 (1132)
+.+++||+.++..+..|.+|.. +|..++|+.+|-+++++.+|+.|++||++..+...++...... .+.++.|.+.|.+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCe
Confidence 8999999999999999999887 9999999999999999999999999999999988888877654 7999999999999
Q ss_pred EEEEeCCCcEEEEEc
Q 001176 644 LAVTTSDNGIKILAN 658 (1132)
Q Consensus 644 l~~~~~dg~i~iw~~ 658 (1132)
|+.++.|=.|++++-
T Consensus 447 L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKK 461 (506)
T ss_pred EEeecceeEEEEEec
Confidence 999987766666653
No 120
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.7e-22 Score=224.58 Aligned_cols=505 Identities=14% Similarity=0.181 Sum_probs=312.6
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCc-EEEEEEcCCCcEEEEECCCCeEEEE
Q 001176 411 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ-LCIVTCGDDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 411 v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~-~~l~s~~~dg~v~vwd~~~~~~~~~ 489 (1132)
-.||+|+++++... +..|.||...++.++. .+.+|..++..+.+.|.... .++++++.||.|++||...+..+++
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt 97 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT 97 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence 46899999988775 4569999999999887 68899999999999987764 4788999999999999999999988
Q ss_pred ecCCCCCeEEEEeecc------------CCccEEEEEecC--CeEEEEEcCCCCc-eEEecCCCCeEEEEEEcCCCCEEE
Q 001176 490 FEGHEAPVYSVCPHHK------------ESIQFIFSTAID--GKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~------------~~~~~l~s~s~d--g~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
+..+- ++.++.+.|. .+-..+.+.+.+ ++++-+.+.+... ...+......-.++.+++.|.+..
T Consensus 98 ~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~ 176 (792)
T KOG1963|consen 98 FDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG 176 (792)
T ss_pred EecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE
Confidence 86432 3333332111 111111111111 1111111111000 000011111135778888888777
Q ss_pred EEecCCCCCCeEEEEeCCCCcee---eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--CeeEEEEeCCCCC
Q 001176 555 SCGTSKEGESHLVEWNESEGAIK---RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNMLTTVDADGGL 629 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~ 629 (1132)
.+. +..+++|+..++... +....++...+++.+++|+++++++|..||+|.+|.--. +.....-..|.|.
T Consensus 177 i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~ 251 (792)
T KOG1963|consen 177 IVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH 251 (792)
T ss_pred EEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc
Confidence 664 445899998875411 112223333578999999999999999999999996433 2222222234445
Q ss_pred CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCC
Q 001176 630 PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLER 709 (1132)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 709 (1132)
..|.+++|+++|.+|++|+.+|.+.+|.+.++++.+ +
T Consensus 252 ~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf--L----------------------------------------- 288 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF--L----------------------------------------- 288 (792)
T ss_pred cccceeEEecCCceEeecccceEEEEEeecCCCccc--c-----------------------------------------
Confidence 589999999999999999999999999998873111 1
Q ss_pred CCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecc
Q 001176 710 PDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS 789 (1132)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 789 (1132)
|. -.+.|..+.++||+...+....
T Consensus 289 ------------------------------------------------------PR--Lgs~I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 289 ------------------------------------------------------PR--LGSPILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred ------------------------------------------------------cc--cCCeeEEEEEcCCCCeEEEEec
Confidence 00 1233455555555555444444
Q ss_pred cceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCe
Q 001176 790 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 869 (1132)
Q Consensus 790 dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~ 869 (1132)
|+.|. +....+..
T Consensus 313 DNqI~-------------------------------------------------------------------li~~~dl~ 325 (792)
T KOG1963|consen 313 DNQIH-------------------------------------------------------------------LIKASDLE 325 (792)
T ss_pred CceEE-------------------------------------------------------------------EEeccchh
Confidence 44444 44443333
Q ss_pred EEEEeeC-----------CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeec-----c------ccCCeeEE
Q 001176 870 VMTMFMS-----------PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-----G------HQNRITGL 927 (1132)
Q Consensus 870 ~~~~~~~-----------~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-----~------h~~~V~~l 927 (1132)
...++.+ ..+-.+.++++| ..+.++..+..|.|.+||+.+.+.+..+. . +.-.++++
T Consensus 326 ~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav 404 (792)
T KOG1963|consen 326 IKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAV 404 (792)
T ss_pred hhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeee
Confidence 2222221 123357788888 67788888999999999998876554432 1 23357888
Q ss_pred EEcCCCCEEEEEc--------CC--CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCc-EEEE-EeCCeEE
Q 001176 928 AFSPTLNALVSSG--------AD--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT-HLLV-VHESQIS 995 (1132)
Q Consensus 928 ~~spdg~~l~s~~--------~D--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~-~~d~~v~ 995 (1132)
+.+..|.+++|.- .| -.+++|-.......-.........|.. ..+..+..++... .+++ +.||.++
T Consensus 405 ~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~K 482 (792)
T KOG1963|consen 405 ARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTRSVRCVTASVDGDFK 482 (792)
T ss_pred hhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcccceeEEeccCCeEE
Confidence 8888899999864 23 358899876654322222222233321 2222333333333 5555 6899999
Q ss_pred EEeCCC-Ccee----ec---CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC-cceecccCCCccccccccCCC
Q 001176 996 VYDSKL-ECSR----SW---SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET-LRFRCRIGPSAYIPTYAVSSN 1066 (1132)
Q Consensus 996 vwd~~~-~~~~----~~---~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~ 1066 (1132)
+|-.+. ..+. .| ..+..|..++++++||.||..|+++ .|++|.+||..+ .+..+.+... ..|
T Consensus 483 iW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~~~~l~~~~~~~-~~~------- 553 (792)
T KOG1963|consen 483 IWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYDTKNELLCTEGSR-NWP------- 553 (792)
T ss_pred EEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCCChhhhhcccccc-ccc-------
Confidence 998721 1111 11 1123468999999999999877755 589999999998 4444443311 111
Q ss_pred CCCcEEEEeCCC-CCCeEEEEeCCCcEEEEecCCCcccccC
Q 001176 1067 TAHPLVIAPHPS-EPNQIALGMSDGAVHVVEPSDAELKWGG 1106 (1132)
Q Consensus 1067 ~~~v~~~~~~p~-~~~~l~s~~~Dg~i~vW~~~~~~~~~~~ 1106 (1132)
...+.+..+ .....+.....+.+.+|++.+..-.|..
T Consensus 554 ---~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~ 591 (792)
T KOG1963|consen 554 ---IAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIWNL 591 (792)
T ss_pred ---hHhHhhhcccccccceeeccCceEehHhhhhhheecch
Confidence 111222110 1123445567889999999999988843
No 121
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=3.6e-24 Score=230.09 Aligned_cols=275 Identities=16% Similarity=0.209 Sum_probs=224.2
Q ss_pred cccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE-EE
Q 001176 766 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC-IA 844 (1132)
Q Consensus 766 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~-~~ 844 (1132)
.+|...|..+++.+.. .+++++.||++++|+-...+ .+-...+.+ | .+-|.. ++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~---------------------~l~~~~~~~--~-~g~i~~~i~ 65 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQ---------------------YLETHAFEG--P-KGFIANSIC 65 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCcc---------------------cccceeccc--C-cceeeccce
Confidence 4588888888876655 68999999999999632111 111111222 4 455555 77
Q ss_pred Eee-CCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccC
Q 001176 845 LSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 922 (1132)
Q Consensus 845 ~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 922 (1132)
+.+ |+-.+++|+ |.+|.+|...+..++.++.+|...|.|+.... ++. +++|++|.++++|-. +++...+++|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 775 555688888 99999999999999999999999999999876 565 889999999999964 677778999999
Q ss_pred CeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCC
Q 001176 923 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1002 (1132)
Q Consensus 923 ~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~ 1002 (1132)
.|+++++-|++ .++|||.|.+|++|.-.+ .++.+.||. +-|+.+++-+++.++-+++||.|++|+++++
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~~ge 210 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE 210 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccch---hheeeeEEecCCCeEeecCCceEEEEeccCc
Confidence 99999999988 899999999999998754 677888888 7899999999999999999999999999999
Q ss_pred ceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCe
Q 001176 1003 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQ 1082 (1132)
Q Consensus 1003 ~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 1082 (1132)
++... ++|..-|.++....++..++++++|++++||+.. ++...+..+ ...+.++.+-+ + .-
T Consensus 211 ~l~~~---~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-----------ttsiWsa~~L~-N-gD 272 (745)
T KOG0301|consen 211 VLLEM---HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP-----------TTSIWSAKVLL-N-GD 272 (745)
T ss_pred eeeee---eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC-----------ccceEEEEEee-C-CC
Confidence 98876 6779999999999999999999999999999988 566666522 13455666655 3 35
Q ss_pred EEEEeCCCcEEEEecC
Q 001176 1083 IALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1083 l~s~~~Dg~i~vW~~~ 1098 (1132)
|++|++||.|+||-..
T Consensus 273 Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 273 IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEeccCceEEEEEec
Confidence 8889999999999887
No 122
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.4e-23 Score=202.82 Aligned_cols=291 Identities=13% Similarity=0.179 Sum_probs=219.2
Q ss_pred cccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEE
Q 001176 766 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 845 (1132)
Q Consensus 766 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 845 (1132)
.+|...|++++|+.||+.|++++.|+.|++|++..-. ...-+.++..+. -+..+.++|
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~-----------------~~eHr~~R~nve-----~dhpT~V~F 140 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE-----------------NKEHRCIRQNVE-----YDHPTRVVF 140 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhh-----------------hhhhhHhhcccc-----CCCceEEEE
Confidence 4599999999999999999999999999999875310 111122222221 224688999
Q ss_pred eeCCCEEEEee--CCeEEEEECCCCe---EEE---------EeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc
Q 001176 846 SKNDSYVMSAS--GGKVSLFNMMTFK---VMT---------MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 911 (1132)
Q Consensus 846 s~dg~~la~~s--dg~i~vwd~~~~~---~~~---------~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 911 (1132)
+||-+-+++.- ..++++|.+...+ ... .-+.|.-.|..+-... ++.+|++++.|..|.+|++. |
T Consensus 141 apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-G 218 (420)
T KOG2096|consen 141 APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-G 218 (420)
T ss_pred CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-C
Confidence 99999777765 6789999875322 111 1123555666677766 88999999999999999998 8
Q ss_pred eeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECC---CcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE
Q 001176 912 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID---KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 912 ~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
+.+..+......-+..+.||+|+++++++.---|++|++- .|+.......-.+.||. ..|..++||++...+++
T Consensus 219 q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~---saV~~~aFsn~S~r~vt 295 (420)
T KOG2096|consen 219 QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ---SAVLAAAFSNSSTRAVT 295 (420)
T ss_pred ceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch---hheeeeeeCCCcceeEE
Confidence 8898888777777888999999999999999999999974 33322223344567887 78999999999999999
Q ss_pred -EeCCeEEEEeCCC--------Cceeec-CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccc
Q 001176 989 -VHESQISVYDSKL--------ECSRSW-SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1058 (1132)
Q Consensus 989 -~~d~~v~vwd~~~--------~~~~~~-~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1058 (1132)
+.||++++||++- +.++.. .+.++-.+.--.+++||.|+.||.+. ...++++..++|+..-.+.
T Consensus 296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e----- 369 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE----- 369 (420)
T ss_pred EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH-----
Confidence 7899999999822 222222 11222233344899999999998765 5789999999998876654
Q ss_pred cccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 001176 1059 PTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1096 (1132)
Q Consensus 1059 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~ 1096 (1132)
..|+..+.+++|++ +|+++++++ |..+++..
T Consensus 370 -----~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 370 -----DIHSTTISSISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred -----HhhcCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence 36788999999999 889999886 77777766
No 123
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=6e-24 Score=218.59 Aligned_cols=265 Identities=15% Similarity=0.255 Sum_probs=215.0
Q ss_pred eEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 336 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 336 ~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
....+.|.++|+.+.+-|....++|+++..+.|.|||...-.-..... ....+...+.+|+..=..++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~---------~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS---------GECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc---------ccCCCceEEEeeccccccccccc
Confidence 345566999999999999999999999999999999997643322100 01112234788998888899999
Q ss_pred CC-CeEEEEeCCCeEEEEEecCCCc----eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC--CCeEEE
Q 001176 416 DG-LMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV--AGRKQY 488 (1132)
Q Consensus 416 dg-~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~--~~~~~~ 488 (1132)
.. -.|++|+.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++.+
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 54 4789999999999999986543 5556678899999999999998777 79999999999999999 566677
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCeEEEEEEcCCCCEE-EEEecCCCCCCeE
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRL-FSCGTSKEGESHL 566 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i 566 (1132)
...+|.++|++++|+|.. +.+|||||.|++|++||+++... +..+.+|...|.++.|||....+ ++++ .|+++
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg----~D~rl 341 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG----TDRRL 341 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc----cCCcE
Confidence 888999999999999986 48999999999999999998665 55889999999999999987654 4544 38899
Q ss_pred EEEeCCCC--------------ceeeeeccccCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCC
Q 001176 567 VEWNESEG--------------AIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDN 616 (1132)
Q Consensus 567 ~~wd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~ 616 (1132)
.+||+..- +++....||.. .|..+.|+|+..+++ ++++|+.+.||.+..
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99999642 23355567776 799999999987655 578999999999863
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=3.1e-24 Score=220.96 Aligned_cols=293 Identities=14% Similarity=0.209 Sum_probs=235.9
Q ss_pred ceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 335 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 335 ~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
+.+.+|.|..-|.++.+|...+ .+.||+ .|.|+|||+....... +...--.-....-|.++.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~tr-hVyTgG-kgcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcc-eeEecC-CCeEEEeeccCCCCCC--------------ccccccccCcccceeeeEec
Confidence 4577888999999999999998 488988 4899999997642211 11110122346689999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCC
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 494 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~ 494 (1132)
|||+.|++|+.-.++.|||+..... +...++..-.-...+++.+||.+ +.++|..||.|.|||+.+...++.|+||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987542 12223333334677899999999 88899999999999999999999999999
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
+.+.||.++. +|..|.||+.|++||.||++.+..+.... -...|.++.++|++.+++.+-. ++.+.+.... +
T Consensus 552 DGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-K 623 (705)
T ss_pred CCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecC-C
Confidence 9999999865 55899999999999999999877765433 2457899999999999999975 5557666644 3
Q ss_pred ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001176 575 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 654 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1132)
.....+..|.. .|.++.|.+.|+++++.|.|+.+..|...-|..+...+. ...|.++.++.|.+++++|+.|....
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceE
Confidence 33444555555 799999999999999999999999999988887776654 34799999999999999999999888
Q ss_pred EEEc
Q 001176 655 ILAN 658 (1132)
Q Consensus 655 iw~~ 658 (1132)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8864
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.1e-23 Score=216.95 Aligned_cols=283 Identities=12% Similarity=0.156 Sum_probs=229.1
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
|..-|..++++...+++.+++. |.|+|||+..... ..++ ..+..... ...|+++.+.|
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~-------------------k~Pv-sqLdcl~r-dnyiRSckL~p 475 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN-------------------KSPV-SQLDCLNR-DNYIRSCKLLP 475 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC-------------------CCcc-ccccccCc-ccceeeeEecC
Confidence 7778888899999998888765 6899999864211 0000 01111112 67899999999
Q ss_pred CCCEEEEee-CCeEEEEECCCCeE--EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCe
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI 924 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 924 (1132)
||+.|++|+ -.++.|||+..... ...+........+++.+| |.++.+++..||.|.|||+.+...++.|+||.+.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence 999999999 68899999976543 334444445678899999 89999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeCCCCc
Q 001176 925 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1003 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~~ 1003 (1132)
.||.+++||..|-|||-|++||-||+.++..+.+.-.. ..|.++..+|.+.||+++ .++.+.|...++..
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~---------SQIfSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS---------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh---------hhheecccCCCccceeeecccCcEEEEecCCcc
Confidence 99999999999999999999999999998754332111 467889999999999997 56788888874443
Q ss_pred eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeE
Q 001176 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1083 (1132)
Q Consensus 1004 ~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 1083 (1132)
--.+ +-|.+.|.++.|++-|+++++.+.|+-+-.|...-|..+.+.. .+..|++|..+. |+++|
T Consensus 626 kyql---hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk------------E~SsVlsCDIS~-ddkyI 689 (705)
T KOG0639|consen 626 KYQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------ESSSVLSCDISF-DDKYI 689 (705)
T ss_pred ceee---cccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc------------ccCcceeeeecc-CceEE
Confidence 3332 4468999999999999999999999999999999998876653 347889999998 77999
Q ss_pred EEEeCCCcEEEEecC
Q 001176 1084 ALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1084 ~s~~~Dg~i~vW~~~ 1098 (1132)
+||+.|....||.+.
T Consensus 690 VTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 690 VTGSGDKKATVYEVI 704 (705)
T ss_pred EecCCCcceEEEEEe
Confidence 999999999998763
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.5e-22 Score=195.11 Aligned_cols=300 Identities=16% Similarity=0.222 Sum_probs=228.6
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCeE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 420 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 420 (1132)
|.+.|+++...+...+++.+|+.||.|.|||++.........+ +-+ ..|. +...--.+|+-.|..+.|-| |.-.+
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeecCcee
Confidence 8899999999996555899999999999999986542211000 000 0010 11112467999999999999 67788
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCC-cEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK-QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 499 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 499 (1132)
.+++.|.+++|||.++-+... .+ .-.+.|.+-+++|-.. ..++++|..|-.|++.|+.+|...+++.||.+.|.+
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred ecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 899999999999999866543 22 2456788888888654 447889999999999999999999999999999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCC-CceEE--------------ecCCCCeEEEEEEcCCCCEEEEEecCCCCCC
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVD--------------YDAPGNWCTMMAYSADGTRLFSCGTSKEGES 564 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~--------------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1132)
+.|+|..+ -.|++|+.||.|++||++.. ++... -..|.+.+..++|+.++.++++++. +.
T Consensus 194 V~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d~ 268 (397)
T KOG4283|consen 194 VEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----DD 268 (397)
T ss_pred EEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----cc
Confidence 99999865 78899999999999999764 33332 2345668999999999999999986 77
Q ss_pred eEEEEeCCCCceeeeecc---ccC---CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001176 565 HLVEWNESEGAIKRTYSG---FRK---RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 638 (1132)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~---~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1132)
++++|+..+|+-...-.+ |.+ ..+. +. +.+...++.--.++.+.++++-++..+..+..|. ..+.+.++.
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~--k~i~c~~~~ 344 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL--KRINCAAYR 344 (397)
T ss_pred ceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc--ceeeEEeec
Confidence 899999988763221111 111 0122 22 3344455555567999999999999999999884 489999999
Q ss_pred CCCCEEEEEeCCCcEEEEEc
Q 001176 639 KEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~ 658 (1132)
|+-+...+|..|+.+..|-.
T Consensus 345 ~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 345 PDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CchhhhhccccCCccccccc
Confidence 99999999999999999975
No 127
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.8e-23 Score=196.48 Aligned_cols=251 Identities=18% Similarity=0.267 Sum_probs=202.5
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC--CCCe
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 419 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~ 419 (1132)
|.+-|-.+...--|+ .|||++.|++|+|+.+..+.... ....+.||.++|..++|.. -|.+
T Consensus 10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 888888888888898 59999999999999998765421 1123789999999999987 7999
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-e--EEEEecCCCCC
Q 001176 420 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-R--KQYTFEGHEAP 496 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~--~~~~~~~h~~~ 496 (1132)
||+++.||.|.||.-.++ ......+...|...|++++|.|.+-.+.|+.++.||.|.|.+..+. . ..+....|...
T Consensus 73 LAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 999999999999998887 4444556778999999999999988889999999999999987754 2 12345679999
Q ss_pred eEEEEeeccCC-c-----------cEEEEEecCCeEEEEEcCCCCce--EEecCCCCeEEEEEEcCCC----CEEEEEec
Q 001176 497 VYSVCPHHKES-I-----------QFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSADG----TRLFSCGT 558 (1132)
Q Consensus 497 v~~i~~~~~~~-~-----------~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~~----~~l~~~~~ 558 (1132)
|++++|.|..- | ..|++|+.|+.|++|+.++..-. ..+..|...|+.++|.|.- .+|++|+.
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 99999988622 1 56999999999999999886432 2578899999999999964 46888874
Q ss_pred CCCCCCeEEEEeCCCC--ceeee-eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 001176 559 SKEGESHLVEWNESEG--AIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 615 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~--~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1132)
|+++.||-.+.. ....+ ++.... .+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 232 ----Dg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 232 ----DGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ----CCcEEEEEecCccCcccccccccCCc-ceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 888999976521 11112 222222 78999999999999999999999999754
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.3e-23 Score=211.11 Aligned_cols=225 Identities=13% Similarity=0.147 Sum_probs=193.7
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC-
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV- 482 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~- 482 (1132)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEe
Confidence 35689999999999999999999999999999999876 5789999999999999999 89999999999999763
Q ss_pred --------CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 483 --------AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 483 --------~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
+-++++.|..|.-+|+++...+.+...+++|+|.|.++++||+..+..+..+. ....+.+++..|-++.++
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVY 233 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEE
Confidence 34677899999999999999887666899999999999999999887766655 456789999999999999
Q ss_pred EEecCCCCCCeEEEEeCCC----------------CceeeeeccccC-CceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 001176 555 SCGTSKEGESHLVEWNESE----------------GAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~----------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1132)
+|+. +|.|.+.++.. +..+..+.||.. ..|+|++++-||..|++|+.||.|+|||+.+.
T Consensus 234 iGt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 234 IGTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ecCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 9875 77788777642 234556777765 57999999999999999999999999999999
Q ss_pred eeEEEEeCCCCCCCcceEEEcCC
Q 001176 618 NMLTTVDADGGLPASPRLRFNKE 640 (1132)
Q Consensus 618 ~~~~~~~~~~~~~~v~~~~~s~~ 640 (1132)
+++.++... .++|+.+.+.|-
T Consensus 310 Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 310 QCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHHhhh--ccccceeEeecc
Confidence 999888743 347888888763
No 129
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=7.7e-23 Score=210.49 Aligned_cols=252 Identities=17% Similarity=0.258 Sum_probs=203.9
Q ss_pred CCCCcCeEEEEEcCC-CCeEEEEeCCCeEEEEEecCCCce-------eeeeeeecccCCEEEEEEecCCCcEEEEEEcCC
Q 001176 402 NDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGEL-------RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 473 (1132)
Q Consensus 402 ~~h~~~V~~v~~spd-g~~las~~~dg~i~iwd~~~~~~~-------~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d 473 (1132)
..|.+.|+.+.+-|. ...+|+.+..+.|.|||..+.... .....|.+|.+.-.+++|++.... .+++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCC
Confidence 349999999999995 556777888999999998764322 223368899998888999998776 79999999
Q ss_pred CcEEEEECCCCe-------EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcC--CCCceEEecCCCCeEEEE
Q 001176 474 KMIKVWDVVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTMM 544 (1132)
Q Consensus 474 g~v~vwd~~~~~-------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~~~~~~~~~~v~~~ 544 (1132)
++|++||+.... +...+.+|...|..++|++... .++++++.|+.+.|||.+ +.+.......|.+.|.|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 999999997543 2456889999999999998755 799999999999999999 555666788899999999
Q ss_pred EEcCCCCE-EEEEecCCCCCCeEEEEeCCCC-ceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeE-
Q 001176 545 AYSADGTR-LFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNML- 620 (1132)
Q Consensus 545 ~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~- 620 (1132)
+|+|-+.+ ||+++. |++|.+||++.. +++.++.+|.. .|..+.|+|.. ..|++++.|+.+.+||+..-...
T Consensus 279 ~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 279 AFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 99996655 555554 888999999874 57889999988 89999999987 56677889999999998752222
Q ss_pred -----------EEEeCCCCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCC
Q 001176 621 -----------TTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 621 -----------~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~ 660 (1132)
..+...+|...|..+.|+|+. -.+++.+.|+.+.||....
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 123344556789999999955 4677889999999998753
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2e-22 Score=207.49 Aligned_cols=305 Identities=16% Similarity=0.198 Sum_probs=226.9
Q ss_pred EEEcCCC-cEEEEECCCCeEEEEecCC-CCCeEEEEeeccCCccEEEEEe-cCCeEEEEEcCCCCceEEecCCCCeEEEE
Q 001176 468 VTCGDDK-MIKVWDVVAGRKQYTFEGH-EAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGSRVDYDAPGNWCTMM 544 (1132)
Q Consensus 468 ~s~~~dg-~v~vwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 544 (1132)
.+++.|. .+.+||+++|....++++- ...-.++... +..+++++. .-..+.+|.+...........-.+++.++
T Consensus 11 sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al 87 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL 87 (476)
T ss_pred eccCCCCcceeEEecCCCceeEEecCcccccchhhhhh---chhheeeecccCccccccccCchhhhhhhcccccceeee
Confidence 3444454 5999999999999888865 2222222211 114555554 45578999887665555455567789999
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--------
Q 001176 545 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-------- 616 (1132)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------- 616 (1132)
+-+|+|.+|+.++. .+.|++|.+.+|.++..+..|.+ .|+|+.|+.||.+|++||.||.|.+|.+.+
T Consensus 88 ~s~n~G~~l~ag~i----~g~lYlWelssG~LL~v~~aHYQ-~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~ 162 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTI----SGNLYLWELSSGILLNVLSAHYQ-SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH 162 (476)
T ss_pred ecCCCceEEEeecc----cCcEEEEEeccccHHHHHHhhcc-ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC
Confidence 99999999998865 56699999999999999999988 999999999999999999999999998632
Q ss_pred -CeeEEEEeCCCCCCCcceEEEcCC--CCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCccccccc
Q 001176 617 -MNMLTTVDADGGLPASPRLRFNKE--GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINAL 693 (1132)
Q Consensus 617 -~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1132)
-+++..+..| .-+|+.+...+. ..+|++++.|.++++||+..+ .++..+.
T Consensus 163 ~~~p~~~f~~H--tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~------------------------ 215 (476)
T KOG0646|consen 163 SVKPLHIFSDH--TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTIT------------------------ 215 (476)
T ss_pred CccceeeeccC--cceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEe------------------------
Confidence 3345555544 447888887764 458999999999999999887 3332211
Q ss_pred CCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceE
Q 001176 694 GPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 773 (1132)
Q Consensus 694 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 773 (1132)
....+.
T Consensus 216 --------------------------------------------------------------------------fp~si~ 221 (476)
T KOG0646|consen 216 --------------------------------------------------------------------------FPSSIK 221 (476)
T ss_pred --------------------------------------------------------------------------cCCcce
Confidence 123577
Q ss_pred EEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEE
Q 001176 774 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 853 (1132)
Q Consensus 774 ~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la 853 (1132)
++++.|.++.+.+|+.+|.|.+.++.. +.+ . +..|.
T Consensus 222 av~lDpae~~~yiGt~~G~I~~~~~~~-----------------------------~~~--~-~~~v~------------ 257 (476)
T KOG0646|consen 222 AVALDPAERVVYIGTEEGKIFQNLLFK-----------------------------LSG--Q-SAGVN------------ 257 (476)
T ss_pred eEEEcccccEEEecCCcceEEeeehhc-----------------------------CCc--c-ccccc------------
Confidence 888899899899999999888765421 000 0 11111
Q ss_pred EeeCCeEEEEECCCCeEEEEeeCCCC--CeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcC
Q 001176 854 SASGGKVSLFNMMTFKVMTMFMSPPP--AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 931 (1132)
Q Consensus 854 ~~sdg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp 931 (1132)
.+.++. .+..+..+.+|.+ .|+|++++- ||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|
T Consensus 258 ------~k~~~~-~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 258 ------QKGRHE-ENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred ------cccccc-ccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 112221 2455677888887 899999999 999999999999999999999999999987888999999966
Q ss_pred CC
Q 001176 932 TL 933 (1132)
Q Consensus 932 dg 933 (1132)
-.
T Consensus 330 ~~ 331 (476)
T KOG0646|consen 330 LE 331 (476)
T ss_pred cc
Confidence 43
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.5e-22 Score=205.97 Aligned_cols=289 Identities=13% Similarity=0.222 Sum_probs=230.4
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCeEEEEEEcCCCC-EEEEEecCCCCCCeEEEEe
Q 001176 494 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd 570 (1132)
.+.|+++.|+|.. .++++++.||++++|.++.... +..+.....+|.+.+|.|+|. .+++++. ...++.||
T Consensus 213 ~~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r----rky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR----RKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCC--ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc----ceEEEEee
Confidence 4789999999977 8999999999999998876543 445666677999999999999 6777664 67799999
Q ss_pred CCCCcee--eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe
Q 001176 571 ESEGAIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 648 (1132)
Q Consensus 571 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1132)
+.+.+.. ....++....+.....++++++++..|..|.|.+....+++.+..++..+ .|..++|+.|++.|++++
T Consensus 287 le~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---VVSDFTFSSDSKELLASG 363 (514)
T ss_pred ccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---EEeeEEEecCCcEEEEEc
Confidence 9987643 34455555568888999999999999999999999999999999998764 589999999999999999
Q ss_pred CCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcc
Q 001176 649 SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGS 728 (1132)
Q Consensus 649 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1132)
.+|.|.+||+... .+.+.+....
T Consensus 364 ~~GeV~v~nl~~~-~~~~rf~D~G-------------------------------------------------------- 386 (514)
T KOG2055|consen 364 GTGEVYVWNLRQN-SCLHRFVDDG-------------------------------------------------------- 386 (514)
T ss_pred CCceEEEEecCCc-ceEEEEeecC--------------------------------------------------------
Confidence 9999999999877 4444433210
Q ss_pred cccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCc
Q 001176 729 RLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGK 808 (1132)
Q Consensus 729 ~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~ 808 (1132)
.-.-++++.+++|.++++|+..|.|.|||.+.--..
T Consensus 387 ----------------------------------------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s---- 422 (514)
T KOG2055|consen 387 ----------------------------------------SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS---- 422 (514)
T ss_pred ----------------------------------------ccceeeeeecCCCceEEeccCcceEEEeccchhhcc----
Confidence 011257888899999999999999999986531111
Q ss_pred cccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee---CCeEEEEECCCCeEEEEeeCCC---CCeE
Q 001176 809 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPP---PAAT 882 (1132)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~---~~i~ 882 (1132)
...+++.....- ...|+++.|++|++.||.++ ...+++--+.+......+.... +.|+
T Consensus 423 ------------~~PkPik~~dNL----tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vt 486 (514)
T KOG2055|consen 423 ------------TNPKPIKTVDNL----TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVT 486 (514)
T ss_pred ------------CCCCchhhhhhh----heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceE
Confidence 111122211222 56799999999999999998 4779999999888877776543 5689
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEEcc
Q 001176 883 FLAFHPQDNNIIAIGMEDSSVQIYNVR 909 (1132)
Q Consensus 883 ~l~~sp~~~~~lasg~~dg~v~iwd~~ 909 (1132)
|++||| .+.++|.|..+|.|.+|.+.
T Consensus 487 c~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 487 CMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEecC-CCceEEeecCCCceeeEeec
Confidence 999999 89999999999999999864
No 132
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.8e-22 Score=193.11 Aligned_cols=297 Identities=12% Similarity=0.181 Sum_probs=223.6
Q ss_pred cccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 332 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 332 ~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
.|.++..+|++.. -.|+.||+.|. +||+|..||.|.|||+.+...-. ++.+|..+|.++
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl 71 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSL 71 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhh-------------------hhhccccceeEE
Confidence 4556677787665 89999999998 79999999999999999866432 378899999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
+||+||+.|++++.|..|.+||+..|..++.. ....+|+.+.|.|-..+..+++- .+..-.+-++..++.. .+.
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~-~Lp 145 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHS-VLP 145 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCcee-ecc
Confidence 99999999999999999999999999877643 24679999999998776444443 3444555555543221 111
Q ss_pred C-CCCCeEEE--EeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 492 G-HEAPVYSV--CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 492 ~-h~~~v~~i--~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
. ..+..... +-..+..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|+.++..+. |+.|+
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR 221 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIR 221 (405)
T ss_pred CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceEE
Confidence 1 11111111 11134456999999999999999999998888777666 78999999999999999875 88899
Q ss_pred EEeCCC-------Cce--eeeeccc-cCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 568 EWNESE-------GAI--KRTYSGF-RKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 568 ~wd~~~-------~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
.|+++. +++ .+.++.- ....-.+++|+.+|.++++++ .-..++||....|.++..+.+..+. ....+.
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~ 300 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVN 300 (405)
T ss_pred EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeecc
Confidence 999862 111 1222110 111456789999999998876 5567999999999999999877643 567889
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|+|-...+++- ..|.+++|.....
T Consensus 301 whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 301 WHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccceeeeeec-cCCceEEEEeecc
Confidence 99988888777 7889999987543
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.9e-22 Score=205.49 Aligned_cols=288 Identities=12% Similarity=0.205 Sum_probs=234.0
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCC-eEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLG 421 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~la 421 (1132)
.++|++|.|+|... +|.+++.|++++||.+.........+ +.-...+|.+..|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence 47899999999998 79999999999999997543211111 122456899999999999 899
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeeccc-CCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
+++.....+.||+.+.+..+ ...+.++. ..+.....+++++ +|+..|..|.|.+-...+++.+.+++ ..+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 99999999999999876543 22344554 3577888999999 89999999999999999999998886 67889999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC------
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE------ 573 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~------ 573 (1132)
+|+. ++..|++.+.+|.|.+||++...++..+...++ .-++++.|++|.+|++|+. .|.|.|||.++
T Consensus 351 ~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFSS--DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEec--CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 9974 558999999999999999999988887766554 5578899999999999974 78899999653
Q ss_pred CceeeeeccccCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCeeEEEEeCC-CCCCCcceEEEcCCCCEEEEEeCC
Q 001176 574 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
.+++.++..-.. .|+++.|+++.+.|+.++ .+..+++-.+.+.....-++.. ...+.|+|++|+|.+.+||.|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 356666665555 799999999999988877 5678999998887766655433 234578999999999999999999
Q ss_pred CcEEEEEcC
Q 001176 651 NGIKILANS 659 (1132)
Q Consensus 651 g~i~iw~~~ 659 (1132)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999763
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.6e-21 Score=216.89 Aligned_cols=281 Identities=19% Similarity=0.203 Sum_probs=212.5
Q ss_pred ccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEe
Q 001176 767 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 846 (1132)
Q Consensus 767 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s 846 (1132)
.|....+.++|.++|..|++++.||.|++|+.....- ....+. . + ...|.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------~P~ti~--~----~-g~~v~~ia~- 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------EPETID--I----S-GELVSSIAC- 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------CCchhh--c----c-CceeEEEee-
Confidence 3777789999999999999999999999997643211 000000 0 2 445655554
Q ss_pred eCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCee
Q 001176 847 KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 925 (1132)
Q Consensus 847 ~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 925 (1132)
++.+|++++ +++|.+|...+++.-..+....-++++++|+. +|.++|.|+.|-.|++-++.+......+++|.++|.
T Consensus 65 -~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 65 -YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred -cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCcee
Confidence 556888888 89999999998877656666678899999999 999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCC-cEEEEEeCCeEEEEeC-CCCc
Q 001176 926 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLVVHESQISVYDS-KLEC 1003 (1132)
Q Consensus 926 ~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~d~~v~vwd~-~~~~ 1003 (1132)
+|.|+|.+.+||+.+.||.|++|+++++.......................++|+|+| ++++.+.|+.|.+|+. ....
T Consensus 143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 9999999999999999999999999987754432111111100001456788999995 5555589999999999 4444
Q ss_pred eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeE
Q 001176 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1083 (1132)
Q Consensus 1004 ~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 1083 (1132)
...+.... +...+..+.|||+|+|||+++.||.|.|||.++-.. . --...|.+++|.| +.+-|
T Consensus 223 ~f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~--------------~~~~~Vc~~aw~p-~~n~i 285 (933)
T KOG1274|consen 223 QFKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H--------------EFKRAVCCEAWKP-NANAI 285 (933)
T ss_pred heeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c--------------cccceeEEEecCC-CCCee
Confidence 44444433 345599999999999999999999999999998322 1 2236788999999 44444
Q ss_pred EEEeCCCcE
Q 001176 1084 ALGMSDGAV 1092 (1132)
Q Consensus 1084 ~s~~~Dg~i 1092 (1132)
-.-..-|..
T Consensus 286 t~~~~~g~~ 294 (933)
T KOG1274|consen 286 TLITALGTL 294 (933)
T ss_pred EEEeecccc
Confidence 433334433
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2.8e-20 Score=205.74 Aligned_cols=292 Identities=13% Similarity=0.139 Sum_probs=216.1
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCeEEEE
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 544 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 544 (1132)
++++++.|+.|++||+.+++.+..+..+.. +.+++|+|++ ..+ ++++.++.|++||..+++....+..+. .+..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDG--KLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCC--CEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEE
Confidence 688999999999999999999888876654 6778887754 554 677889999999999877665554433 35678
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeeEEEE
Q 001176 545 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTV 623 (1132)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 623 (1132)
+|+|+++.+++++. .++.+++||+.+++.+..+.... .+..++|+|++..+++++.++ .+.+||..+++....+
T Consensus 79 ~~~~~g~~l~~~~~---~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 79 ALHPNGKILYIANE---DDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred EECCCCCEEEEEcC---CCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99999998876542 36789999999988877776432 467799999999999887664 5778899888776655
Q ss_pred eCCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCcccccc
Q 001176 624 DADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 702 (1132)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 702 (1132)
.... ....++|++++++|++++ .++.|++||+.++ +....+..+
T Consensus 154 ~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~------------------------------- 198 (300)
T TIGR03866 154 LVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFE------------------------------- 198 (300)
T ss_pred EcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeec-------------------------------
Confidence 4322 457899999999886554 5899999999876 222211100
Q ss_pred ccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCc
Q 001176 703 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL 782 (1132)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 782 (1132)
..+.
T Consensus 199 ----------------------------------------------------------------------------~~~~ 202 (300)
T TIGR03866 199 ----------------------------------------------------------------------------IPGV 202 (300)
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 0000
Q ss_pred eEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEe--eCCeE
Q 001176 783 SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA--SGGKV 860 (1132)
Q Consensus 783 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~--sdg~i 860 (1132)
.. . ......++|+||+++++++ +++.+
T Consensus 203 -----------------------------------------------~~---~-~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 203 -----------------------------------------------HP---E-AVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred -----------------------------------------------cc---c-cCCccceEECCCCCEEEEEcCCCCeE
Confidence 00 0 1123357788999876554 36789
Q ss_pred EEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEE-eCCCcEEEEEcccceeeeeeccccCCeeEEEEcC
Q 001176 861 SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 931 (1132)
Q Consensus 861 ~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp 931 (1132)
.+||..+++....+. +...+.+++|+| ++++|+++ ..+|.|.+||+.+++++.++... ...+.++++|
T Consensus 232 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 232 AVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 999999888776654 445789999999 88888776 56899999999999999988754 5568888875
No 136
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=1e-21 Score=201.38 Aligned_cols=300 Identities=15% Similarity=0.217 Sum_probs=226.4
Q ss_pred eEEeec-CCCCeeEEEEccCCC-eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~-~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
...... +..+|++++|+|... .++|+|...|+|-+||+.+.+...... .++..|.++|.++.|
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F 242 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKF 242 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEe
Confidence 334444 778999999999765 799999999999999997544332211 126789999999999
Q ss_pred cC-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE-EEEec
Q 001176 414 GP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFE 491 (1132)
Q Consensus 414 sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~ 491 (1132)
+| +-..+.+.+.||+|+.-|++++.. .....+......+..+.|+.+.. .++.+..=|.+.+||++++.. ...+.
T Consensus 243 ~P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 243 SPANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred cCCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhh
Confidence 99 556889999999999999998642 22223333455678889998888 677787778999999998765 55667
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce----EEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
-|...|.+++++|..+ .+++|+|.|++.+|||++..... .....|...|.+..|||.+-.|++.+. |..|+
T Consensus 320 lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IR 394 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIR 394 (498)
T ss_pred hhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceE
Confidence 7999999999999866 79999999999999999875443 345568889999999998877887764 77899
Q ss_pred EEeCC----CCceeeeeccccCC----ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcce-EEEc
Q 001176 568 EWNES----EGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR-LRFN 638 (1132)
Q Consensus 568 ~wd~~----~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s 638 (1132)
+||.. .-.+..++...... ......|.|+..++++|-.-..|-|+|-..++.+..+..+... .|.+ ..|+
T Consensus 395 v~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~H 473 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFH 473 (498)
T ss_pred EeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeec
Confidence 99983 23333333221110 2344789999999999998889999999999988876554332 3443 5799
Q ss_pred CCCC-EEEEEeCCCcEEEEEcC
Q 001176 639 KEGS-LLAVTTSDNGIKILANS 659 (1132)
Q Consensus 639 ~~~~-~l~~~~~dg~i~iw~~~ 659 (1132)
|-+. +++-++..|.|++|.-.
T Consensus 474 P~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 474 PMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccceeccCCccceEEEEecC
Confidence 9777 44445557888888643
No 137
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.4e-19 Score=201.69 Aligned_cols=472 Identities=13% Similarity=0.166 Sum_probs=310.6
Q ss_pred EEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCc-cEEEEEecCCeEEEEEcCCCCceE
Q 001176 454 NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI-QFIFSTAIDGKIKAWLYDYLGSRV 532 (1132)
Q Consensus 454 ~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~ 532 (1132)
..-.|++|++. ++.+ .+..|.||...+|.++..+.+|..++.++.+.|.... .++++++.||.|++||...+....
T Consensus 20 ~~avfSnD~k~--l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 20 SPAVFSNDAKF--LFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred cccccccCCcE--EEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 34578999983 4433 3569999999999999999999999999999887754 678899999999999999888877
Q ss_pred EecCCCCeEEEEEEcC---CCCEEEEEec---------CCCCCCeEEEEeCCCC--ceeeeeccccCCceEEEEEeCCCC
Q 001176 533 DYDAPGNWCTMMAYSA---DGTRLFSCGT---------SKEGESHLVEWNESEG--AIKRTYSGFRKRSLGVVQFDTTRN 598 (1132)
Q Consensus 533 ~~~~~~~~v~~~~~s~---~~~~l~~~~~---------~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1132)
.+..+.. +..+.+.| +-...+..+. ..+-.++++-+.+.+. ........+. .-.++.+++.|.
T Consensus 97 t~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~--~~~~I~~~~~ge 173 (792)
T KOG1963|consen 97 TFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ--EPKSIVDNNSGE 173 (792)
T ss_pred EEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc--CCccEEEcCCce
Confidence 7665443 22222222 1111111110 0011111222222110 0111111111 134577888776
Q ss_pred EEEEEEcCCeEEEEECCCCeeEEEE-e-CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccc
Q 001176 599 RFLAAGDEFQIKFWDMDNMNMLTTV-D-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 676 (1132)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 676 (1132)
+.+.. .+..+.+|+..+....... . ...|.-.+++.+++|+++++++|..||.|.+|.--.. .
T Consensus 174 ~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~----------~---- 238 (792)
T KOG1963|consen 174 FKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS----------S---- 238 (792)
T ss_pred EEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc----------c----
Confidence 65555 4667899998875511111 1 1112224789999999999999999999999963210 0
Q ss_pred cCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCC
Q 001176 677 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 756 (1132)
Q Consensus 677 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~ 756 (1132)
T Consensus 239 -------------------------------------------------------------------------------- 238 (792)
T KOG1963|consen 239 -------------------------------------------------------------------------------- 238 (792)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCC
Q 001176 757 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 836 (1132)
Q Consensus 757 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~ 836 (1132)
..+-+.++|.+ |
T Consensus 239 -------------------------------~~~~t~t~lHW------------------------------------H- 250 (792)
T KOG1963|consen 239 -------------------------------DDSETCTLLHW------------------------------------H- 250 (792)
T ss_pred -------------------------------cccccceEEEe------------------------------------c-
Confidence 00001122221 5
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeee
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 915 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 915 (1132)
..+|.+++|++||.+|.+|+ .+.+.+|.+.+++ ..-++.-.+.|..+.+|| ++.+.+....|..|.+-...+.+...
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKS 328 (792)
T ss_pred ccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhh
Confidence 77899999999999999999 7889999999988 455666778899999999 89999999999999999887655444
Q ss_pred eecc-----------ccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCC---CCCCceeEEECC
Q 001176 916 KLKG-----------HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS---PLVGETKVQFHN 981 (1132)
Q Consensus 916 ~l~~-----------h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~ 981 (1132)
++.+ ..+-.+.++++|.-+.++-.+..|.|.+||+-+.+.+....+...+.+.. ....++.++.+.
T Consensus 329 tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~ 408 (792)
T KOG1963|consen 329 TISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR 408 (792)
T ss_pred hccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc
Confidence 4332 23446788999988889999999999999998876654433322222211 124678888899
Q ss_pred CCcEEEEEe---------CC--eEEEEeCCCC---ceeecCCCCCCCCCeEEEEEccC-CC-EEEEEecCCcEEEEeCCC
Q 001176 982 DQTHLLVVH---------ES--QISVYDSKLE---CSRSWSPKDALPAPISSAIYSCD-GL-LVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 982 dg~~l~~~~---------d~--~v~vwd~~~~---~~~~~~~~~~h~~~i~~i~~s~d-g~-~las~~~dg~i~vwd~~~ 1045 (1132)
.|.++++.. || .+++|-...+ ....-.....|...+.+.+|.+. .. ..++++.||.++||-+.+
T Consensus 409 ~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~ 488 (792)
T KOG1963|consen 409 FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD 488 (792)
T ss_pred cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEec
Confidence 999999842 22 4778876222 11111223455666666666543 22 789999999999999966
Q ss_pred cceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1046 LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
.+.+..... .+....+.+=|...+.+++|+. || .+++.+.|++|.+||..+
T Consensus 489 ~~n~~k~~s-~W~c~~i~sy~k~~i~a~~fs~-dG-slla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 489 DSNIYKKSS-NWTCKAIGSYHKTPITALCFSQ-DG-SLLAVSFDDTITIWDYDT 539 (792)
T ss_pred ccccCcCcc-ceEEeeeeccccCcccchhhcC-CC-cEEEEecCCEEEEecCCC
Confidence 555433221 1111111223567788899997 66 666677899999999988
No 138
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=3.4e-21 Score=188.29 Aligned_cols=270 Identities=12% Similarity=0.140 Sum_probs=204.4
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
....|.++.|+|.+..|++++.||.+++|++..... ...+ .| ..++.+++|.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l-----------------------~~~~---~~-~~plL~c~F~d 64 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL-----------------------KLKF---KH-GAPLLDCAFAD 64 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh-----------------------hhhe---ec-CCceeeeeccC
Confidence 457899999999999999999999999998754211 0011 25 88999999987
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeE
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 926 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 926 (1132)
+ ..+++|+ ||.|+.+|+.+++. ..+..|...|+||.+++ ....+++|++|++|++||.........+. ....|.+
T Consensus 65 ~-~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~ 140 (323)
T KOG1036|consen 65 E-STIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYC 140 (323)
T ss_pred C-ceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccc-cCceEEE
Confidence 5 4556666 99999999998766 44556999999999999 77888999999999999998755555554 3347888
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCCC---
Q 001176 927 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLE--- 1002 (1132)
Q Consensus 927 l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~--- 1002 (1132)
+.. .|..|+.|+.|..|.+||+.+.+...+..-..+ ...+.++++-|++.=.++ +-||.|.+=..+..
T Consensus 141 ~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l------kyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~ 212 (323)
T KOG1036|consen 141 MDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL------KYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA 212 (323)
T ss_pred Eec--cCCEEEEeecCceEEEEEcccccchhhhccccc------eeEEEEEEEecCCCceEEEeecceEEEEccCCchHH
Confidence 876 477899999999999999998654322111111 156889999997665555 67999887665221
Q ss_pred --------ceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEE
Q 001176 1003 --------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIA 1074 (1132)
Q Consensus 1003 --------~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1074 (1132)
|.+.........-+|++|+|+|-...||||+.||.|.+||+.+.+.++++. .-...+..++
T Consensus 213 ~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~-----------~~~~SI~sls 281 (323)
T KOG1036|consen 213 QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA-----------KYETSISSLS 281 (323)
T ss_pred hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc-----------CCCCceEEEE
Confidence 222221111123479999999999999999999999999999999888774 3345678899
Q ss_pred eCCCCCCeEEEEeC
Q 001176 1075 PHPSEPNQIALGMS 1088 (1132)
Q Consensus 1075 ~~p~~~~~l~s~~~ 1088 (1132)
|+. +|..||.|+.
T Consensus 282 fs~-dG~~LAia~s 294 (323)
T KOG1036|consen 282 FSM-DGSLLAIASS 294 (323)
T ss_pred ecc-CCCeEEEEec
Confidence 998 8889998863
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.6e-23 Score=225.94 Aligned_cols=235 Identities=17% Similarity=0.321 Sum_probs=213.9
Q ss_pred CCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001176 402 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 481 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~ 481 (1132)
..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeeeh
Confidence 3588899999987788999999999999999988765544 5889999999999999988 8999999999999999
Q ss_pred CCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCC
Q 001176 482 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 561 (1132)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1132)
+.++.++++.+|...+.++.|+|.. .+.++|+.|+.+++||.+..++...+.+|...+..+.|+|+|++++.++.
T Consensus 100 eeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e--- 174 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE--- 174 (825)
T ss_pred hhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC---
Confidence 9999999999999999999999876 88999999999999999999999999999999999999999999999874
Q ss_pred CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCC
Q 001176 562 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 641 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1132)
|..+++||...|+....|.+|.. .+.++.|+|..-.+..||.|+++++||+++.+.+...... ...|.+.+|+|++
T Consensus 175 -d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 175 -DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDG 250 (825)
T ss_pred -cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCc
Confidence 78899999999999999999887 8888999998888888999999999999998888877655 4589999999999
Q ss_pred CEEEEEeCC
Q 001176 642 SLLAVTTSD 650 (1132)
Q Consensus 642 ~~l~~~~~d 650 (1132)
..+++|..+
T Consensus 251 ~~~~~G~q~ 259 (825)
T KOG0267|consen 251 KIVLSGEQI 259 (825)
T ss_pred eeeecCchh
Confidence 998887654
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=9.7e-22 Score=209.37 Aligned_cols=290 Identities=14% Similarity=0.146 Sum_probs=210.6
Q ss_pred CceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCe
Q 001176 781 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGK 859 (1132)
Q Consensus 781 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~ 859 (1132)
.+.|+.+..+|.|.++|.....+.++.. ++. .. ..| ...|..+.|.|....|++++ |.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~---------------~lk--~~--~aH-~nAifDl~wapge~~lVsasGDsT 123 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEER---------------QLK--KP--LAH-KNAIFDLKWAPGESLLVSASGDST 123 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhh---------------hhc--cc--ccc-cceeEeeccCCCceeEEEccCCce
Confidence 3456778889999999876543321111 000 01 127 88999999999667788887 899
Q ss_pred EEEEECCCCeEEEE--eeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce-------------------------
Q 001176 860 VSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE------------------------- 912 (1132)
Q Consensus 860 i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~------------------------- 912 (1132)
+++||+.+.++... +.+|.+.|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 99999999998877 899999999999999888999999999999999986311
Q ss_pred --eeeeeccccCCeeE---EEEcCCCCEEEEEcC-CCcEEEEECCCcccccce---eeeCCCCCCCCCCCceeEEECCCC
Q 001176 913 --VKTKLKGHQNRITG---LAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSR---FIQAPAGRQSPLVGETKVQFHNDQ 983 (1132)
Q Consensus 913 --~~~~l~~h~~~V~~---l~~spdg~~l~s~~~-D~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~dg 983 (1132)
.+....+|...|.+ +.+..|...|||+|. |+.|++||+......... .......+......+.++.....|
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 11122345555555 556678999999987 999999999875432211 111222222223567788888888
Q ss_pred cEEEE-EeCCeEEEEeCCCCceeecCCCCCC---CCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCcccc
Q 001176 984 THLLV-VHESQISVYDSKLECSRSWSPKDAL---PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIP 1059 (1132)
Q Consensus 984 ~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h---~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 1059 (1132)
.+|++ +.|+.|++|++....+.......++ ...+. -..|||+.+|++|+.|..+++|.+.+.+. +
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk-s~lSpd~~~l~SgSsd~~ayiw~vs~~e~----------~ 352 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK-SELSPDDCSLLSGSSDEQAYIWVVSSPEA----------P 352 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeee-eecCCCCceEeccCCCcceeeeeecCccC----------C
Confidence 99888 7899999999933322221111111 11222 34689999999999999999999998654 2
Q ss_pred ccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1060 TYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1060 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
..+.-+|...|++++|.|..-.-+++++.|.++++|++..+-
T Consensus 353 ~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 353 PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 233459999999999999877788889999999999997765
No 141
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=190.40 Aligned_cols=253 Identities=13% Similarity=0.233 Sum_probs=194.9
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE
Q 001176 408 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 408 V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~ 487 (1132)
-.|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976443 5789999999999999999 8999999999999999999999
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC----eEEEEEEcCCCCEEEEEecCCCCC
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----WCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
+.++ ...+|+...|+|......+++- .+..-.+-++..+.....-....+ .-.+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9886 6789999999998765444443 333345555554322221111111 2233468899999999964 8
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-------eeE--EEEeCCCCCCCcce
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-------NML--TTVDADGGLPASPR 634 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v~~ 634 (1132)
|.+.++|..+.+++..++-.....|..+.++..|++|+.-+.|+.||.|++..- ++. +.+.---....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 889999999999998888766447999999999999999999999999998631 111 11110001113357
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEEcCCcceeeeeccccc
Q 001176 635 LRFNKEGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRA 672 (1132)
Q Consensus 635 ~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~ 672 (1132)
++|+.+|.+++.++. ...++||....| .+++.+.|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 899999999987765 567999999888 7888877654
No 142
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=8.5e-21 Score=202.02 Aligned_cols=273 Identities=12% Similarity=0.145 Sum_probs=203.9
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 424 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 424 (1132)
.|..++|-|||..+++.+ +..+.|||...|..+.+ +++|++.|.|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 789999999998766655 46899999999998875 889999999999999999999999
Q ss_pred CCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeec
Q 001176 425 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 504 (1132)
Q Consensus 425 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~ 504 (1132)
.|..|.+|+-.-...++ ..|.+.|.|+.|+|-.. .++||+-. ..-+|........ .. .....|.+.+|
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~-K~-kss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS-KH-KSSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH-hh-hhheeEEEeee--
Confidence 99999999976544333 36999999999999988 78888743 5678986544322 11 12345666666
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCeEEEEEEcCCCC-----EEEEEecCCCCCCeEEEEeCCCCce
Q 001176 505 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSADGT-----RLFSCGTSKEGESHLVEWNESEGAI 576 (1132)
Q Consensus 505 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~-----~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1132)
..||++++.|-.+|+|.+-+-.. ++...+. +...+|.+++|+|... .+++.-. ..++.++.+. |+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-cee
Confidence 55779999999999999875443 3333333 3456999999999642 3333321 3345555543 333
Q ss_pred eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001176 577 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 656 (1132)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1132)
+..-..-.- ...|+.+.++|.+++.||.|+.+.+|.. .|-.+.++.... ..|+.++..|+++.++.|+.||+|-.|
T Consensus 215 Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 215 IGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred ecccccCCC-CchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEEccCeeehh
Confidence 332221111 4567899999999999999999999964 455666665433 379999999999999999999999999
Q ss_pred EcCC
Q 001176 657 ANSD 660 (1132)
Q Consensus 657 ~~~~ 660 (1132)
++..
T Consensus 291 Nl~f 294 (1081)
T KOG1538|consen 291 NLIF 294 (1081)
T ss_pred hhHH
Confidence 8753
No 143
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=3.1e-20 Score=205.31 Aligned_cols=276 Identities=10% Similarity=0.068 Sum_probs=204.2
Q ss_pred EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE-EEEeCCCeEEEEEecC
Q 001176 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYNP 436 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-as~~~dg~i~iwd~~~ 436 (1132)
++++++.|+.|++||+.+++.+.. +..+ ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788999999999999998875542 2233 346789999999976 5667889999999998
Q ss_pred CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEec
Q 001176 437 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 516 (1132)
Q Consensus 437 ~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~ 516 (1132)
++... .+..+. .+..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++|+|++ .++++++.
T Consensus 63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg--~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG--KIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC--CEEEEEec
Confidence 76544 333333 3567899999983 345556789999999999888877753 3346788887744 78888877
Q ss_pred CC-eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC------CceE
Q 001176 517 DG-KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLG 589 (1132)
Q Consensus 517 dg-~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~ 589 (1132)
++ .+.+||..+........ ......+++|+|+++++++++. .++.|++||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 56778987765544333 2334578999999998876542 367899999999987776543211 0234
Q ss_pred EEEEeCCCCEEEEE-EcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCCcceeeee
Q 001176 590 VVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRM 667 (1132)
Q Consensus 590 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~ 667 (1132)
.++|+|++++++++ +.++.+.+||..+++.+..+... ..+.+++|+|+|++|+++ ..+|.|.+||+.++ +....
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 58899999986554 46778999999998877665422 268899999999999886 45899999999988 55554
Q ss_pred cc
Q 001176 668 LE 669 (1132)
Q Consensus 668 ~~ 669 (1132)
++
T Consensus 287 ~~ 288 (300)
T TIGR03866 287 IK 288 (300)
T ss_pred EE
Confidence 44
No 144
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4e-21 Score=202.90 Aligned_cols=317 Identities=16% Similarity=0.231 Sum_probs=230.4
Q ss_pred eeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEE
Q 001176 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523 (1132)
Q Consensus 444 ~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~w 523 (1132)
..+.||++.|.++...|.|. .|++|+.||+|+||.+.+|++++++. ..+.|.+|+|+|.++...|+++-.+. +.+-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence 45789999999999999999 89999999999999999999999886 55689999999998865555555444 5555
Q ss_pred EcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc----eeeeeccccCCceEEEEEeCCCCE
Q 001176 524 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRNR 599 (1132)
Q Consensus 524 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ 599 (1132)
+..-+..+... +....|+++-.....+..+..|.-.... -++..-.|.. .|..+.|+..|.|
T Consensus 470 np~~G~~~e~~-------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k-~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 470 NPIFGDRLEVG-------------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK-SIRQVTWHRKGDY 535 (733)
T ss_pred Cccccchhhhc-------------chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC-ccceeeeecCCce
Confidence 44333211110 1112222221111235567788755221 1223333444 7999999999999
Q ss_pred EEEEE---cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccc
Q 001176 600 FLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 676 (1132)
Q Consensus 600 l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 676 (1132)
|++.. ....|.|.++........+.... +.|.++.|+|...+|++++. ..|++||+... .+++.+
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ~PF~ksk--G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq-elvKkL-------- 603 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQSPFRKSK--GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ-ELVKKL-------- 603 (733)
T ss_pred EEEeccCCCcceEEEEecccccccCchhhcC--CceeEEEecCCCceEEEEec-cceEEEehhHH-HHHHHH--------
Confidence 99965 45678999988776665554333 36899999998888888765 48999988654 222221
Q ss_pred cCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCC
Q 001176 677 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 756 (1132)
Q Consensus 677 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~ 756 (1132)
T Consensus 604 -------------------------------------------------------------------------------- 603 (733)
T KOG0650|consen 604 -------------------------------------------------------------------------------- 603 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCC
Q 001176 757 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 836 (1132)
Q Consensus 757 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~ 836 (1132)
+.+
T Consensus 604 -------------------------------------------------------------------------~tg---- 606 (733)
T KOG0650|consen 604 -------------------------------------------------------------------------LTG---- 606 (733)
T ss_pred -------------------------------------------------------------------------hcC----
Confidence 111
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCC-CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcc-----
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR----- 909 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~----- 909 (1132)
...|..++++|.|.-|+.++ |+.+..||++- .++.++++.|...+++++|++ .-.++++|+.||++.|+.-.
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhh
Confidence 33466677777777777777 88888888864 467788899999999999999 88899999999999998532
Q ss_pred -cc---eeeeeeccccCC----eeEEEEcCCCCEEEEEcCCCcEEEE
Q 001176 910 -VD---EVKTKLKGHQNR----ITGLAFSPTLNALVSSGADAQLCMW 948 (1132)
Q Consensus 910 -~~---~~~~~l~~h~~~----V~~l~~spdg~~l~s~~~D~~i~iw 948 (1132)
.. -.+..+.+|... |....|+|...+|+|+|.||+|++|
T Consensus 686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 22 245678888766 8899999999999999999999998
No 145
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=7.1e-21 Score=183.70 Aligned_cols=302 Identities=15% Similarity=0.201 Sum_probs=220.4
Q ss_pred ccccceEEEEEec-CCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEE
Q 001176 767 IAASKVVRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 845 (1132)
Q Consensus 767 ~~~~~i~~~~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 845 (1132)
.|.+.|.++.+.+ .|+++++|+.||.+.+||++..........+.. ....+.. .....| ...|..+.|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k---------~~c~v~~-~h~~~H-ky~iss~~W 109 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK---------HKCIVAK-QHENGH-KYAISSAIW 109 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeh---------eeeeccc-cCCccc-eeeeeeeEE
Confidence 4788999999987 589999999999999999975321111111100 0001111 122237 889999999
Q ss_pred ee-CCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCC--CCeEEEEeCCCcEEEEEcccceeeeeecccc
Q 001176 846 SK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD--NNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 921 (1132)
Q Consensus 846 s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~--~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 921 (1132)
-| |...+.+++ |.+++|||..+.+....|+ -.+.|.+-++||-. .-++|+|..|-.|++-|+.+|...+.+.||.
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 88 666777777 9999999999998888877 45678888888732 3478889999999999999999999999999
Q ss_pred CCeeEEEEcCCCCE-EEEEcCCCcEEEEECCCcc-c---------ccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-E
Q 001176 922 NRITGLAFSPTLNA-LVSSGADAQLCMWSIDKWE-K---------LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V 989 (1132)
Q Consensus 922 ~~V~~l~~spdg~~-l~s~~~D~~i~iwd~~~~~-~---------~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~ 989 (1132)
+.|.++.|+|...+ |+||+.||.|++||+..-. + .....++....|. ..+..++|+.||.++++ +
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~---gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHY---GKVNGLAWTSDARYLASCG 265 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccc---ceeeeeeecccchhhhhcc
Confidence 99999999998765 7899999999999997531 1 0111112122222 67889999999999999 7
Q ss_pred eCCeEEEEeC-CCCce-eecCCCCCCCCC---eEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccC
Q 001176 990 HESQISVYDS-KLECS-RSWSPKDALPAP---ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1064 (1132)
Q Consensus 990 ~d~~v~vwd~-~~~~~-~~~~~~~~h~~~---i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1064 (1132)
.|..+++|+. ++... +.+.+ ..|... -.-+. +-+...++.--.|+.+.++++-+|..+..+.
T Consensus 266 td~r~r~wn~~~G~ntl~~~g~-~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~----------- 332 (397)
T KOG4283|consen 266 TDDRIRVWNMESGRNTLREFGP-IIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS----------- 332 (397)
T ss_pred CccceEEeecccCccccccccc-ccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee-----------
Confidence 8999999999 44322 22211 111111 11122 3444455555567999999999999998886
Q ss_pred CCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 001176 1065 SNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1097 (1132)
Q Consensus 1065 ~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~ 1097 (1132)
.|...+.+.+|.| +-....+|..|+.|..|-.
T Consensus 333 ~h~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 333 THLKRINCAAYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cccceeeEEeecC-chhhhhccccCCccccccc
Confidence 6667888899988 7788999999999999987
No 146
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.8e-20 Score=182.52 Aligned_cols=259 Identities=13% Similarity=0.166 Sum_probs=194.2
Q ss_pred CCCCCeeEEEEeeCCCEEEEee-CCeEEEEECC----CCeEEEEeeCCCCCeEEEEEeC-CCCCeEEEEeCCCcEEEEEc
Q 001176 835 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMM----TFKVMTMFMSPPPAATFLAFHP-QDNNIIAIGMEDSSVQIYNV 908 (1132)
Q Consensus 835 h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~----~~~~~~~~~~~~~~i~~l~~sp-~~~~~lasg~~dg~v~iwd~ 908 (1132)
| ..-|.++.|.+-|+.+|+++ |++|+|||.. +..+....+.|.+.|..+.|.+ .-|+.+|+++.|+++.||.=
T Consensus 12 h-~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 12 H-KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred C-cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 6 78899999999999999999 9999999964 3567778899999999999964 45899999999999999975
Q ss_pred cc---------ceeeeeeccccCCeeEEEEcCC--CCEEEEEcCCCcEEEEECCCcccccceeee-------CCCCCCCC
Q 001176 909 RV---------DEVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQ-------APAGRQSP 970 (1132)
Q Consensus 909 ~~---------~~~~~~l~~h~~~V~~l~~spd--g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~ 970 (1132)
.. .....++....+.|+.+.|.|. |-.||+++.||.+|||+.-..-.+....++ .+.+. .
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~--~ 168 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK--N 168 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc--c
Confidence 21 2244556777888999999985 678999999999999987654332222211 11111 1
Q ss_pred CCCceeEEECCC---CcEEEEEeCC------eEEEEeC--CCCceeecCCCCCCCCCeEEEEEccC-C---CEEEEEecC
Q 001176 971 LVGETKVQFHND---QTHLLVVHES------QISVYDS--KLECSRSWSPKDALPAPISSAIYSCD-G---LLVYAGFCD 1035 (1132)
Q Consensus 971 ~~~v~~~~~s~d---g~~l~~~~d~------~v~vwd~--~~~~~~~~~~~~~h~~~i~~i~~s~d-g---~~las~~~d 1035 (1132)
...-.++.|.|. ..+++++.+. .+.+|.. .++.........+|..+|++++|.|+ | .+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 145678888874 3577887665 7899987 44344444444578999999999996 3 379999999
Q ss_pred CcEEEEeCCCcc------------eecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1036 GAIGVFDAETLR------------FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1036 g~i~vwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
| |+||++.... .+..+... .......|...|-.+.|.- .|.+|+++|.||+||+|..+--.
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~---~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVE---KVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceE---EeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhhhhhh
Confidence 9 9999998422 11111111 1122458999999999998 78999999999999999986533
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=7.3e-21 Score=202.76 Aligned_cols=291 Identities=18% Similarity=0.219 Sum_probs=212.0
Q ss_pred eEEEEcc--CCCeEEEEEcCCCcEEEEecCCCccc-cccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 347 MSMDFHP--QQQTILLVGTNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 347 ~~~~~sp--dg~~lla~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
.++.|++ +.+++||.+..||.|.++|.....-. ....|+ ....|.+.|..+.|-|-...|+++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk--------------~~~aH~nAifDl~wapge~~lVsa 118 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLK--------------KPLAHKNAIFDLKWAPGESLLVSA 118 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhc--------------ccccccceeEeeccCCCceeEEEc
Confidence 3456664 55679999999999999998754322 111111 134699999999999966789999
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe------------------
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR------------------ 485 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~------------------ 485 (1132)
+.|.++++||+++++..... .+.||.+.|.+++|.|++.. .|++|+.||.|.|||++-..
T Consensus 119 sGDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ 196 (720)
T KOG0321|consen 119 SGDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA 196 (720)
T ss_pred cCCceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC
Confidence 99999999999998876543 46799999999999999887 89999999999999986322
Q ss_pred ---------EEEEecCCCCCeEE---EEeeccCCccEEEEEec-CCeEEEEEcCCCCceEE--------ecCC---CCeE
Q 001176 486 ---------KQYTFEGHEAPVYS---VCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVD--------YDAP---GNWC 541 (1132)
Q Consensus 486 ---------~~~~~~~h~~~v~~---i~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~--------~~~~---~~~v 541 (1132)
.+...+.+...|.+ +.+.- |...|++++. |+.|+|||++....... +..+ ...+
T Consensus 197 ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~ 274 (720)
T KOG0321|consen 197 PTPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ 274 (720)
T ss_pred CCCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee
Confidence 11112234444444 32322 4478898888 99999999987554332 1222 2367
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC--ceeeeeccccCCceE-EEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 542 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLG-VVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
.++.....|.+|++.+. |+.|++||+.+- .++..+.++....++ .-..+|++.++++|+.|...++|.+.+.+
T Consensus 275 ~nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EEEEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 78888888888776654 778999999864 345555555432222 23468999999999999999999998755
Q ss_pred eE-EEEeCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEEEEcCCc
Q 001176 619 ML-TTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 619 ~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.- ..+.+| ...|++++|.| +-.-++++++|.++++|++.++
T Consensus 351 ~~~~~l~Gh--t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 351 APPALLLGH--TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CChhhhhCc--ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 33 333444 44799999998 3345677799999999999766
No 148
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.9e-21 Score=210.46 Aligned_cols=297 Identities=11% Similarity=0.184 Sum_probs=226.5
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCeEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 421 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~la 421 (1132)
.....++...++-..+++.|- ....||.+....... .+.+.+-.. ..-...+..|.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~~--~~~~~~k~k----------qn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR--SLLKLYAINPNDFSE--KCNHRFKTK----------QNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEecc--cceeeEeeCcccCCc--ceeeecccc----------cceeeehhhcccccchhhhhe
Confidence 346677777888776555552 467777766543221 111111000 00112455678876 678999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+++..|.|.+||+.....-+....+..|...+.++.|++...+ +|++||.||+|++||++..+...++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873332333367889999999999998877 899999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeee
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 580 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1132)
|+|.. +..++++...|.+++||++... +...+..|.++|.|+.|+|++.+||+||. |+.|+|||..+++.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99876 5899999999999999998765 45578999999999999999999999985 778999999876655444
Q ss_pred ccccCCceEEEEEeCCCCE-EEEEE--cCCeEEEEECCCCe-eEEEEeCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEE
Q 001176 581 SGFRKRSLGVVQFDTTRNR-FLAAG--DEFQIKFWDMDNMN-MLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 655 (1132)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 655 (1132)
.-+...++.++.|-|...+ |++++ .|..|+|||++..- +..++..|. ..++.++|.. |...+.+++.||+|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~--~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT--DSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC--ccccceeccCCCceeeEeecCccHHHH
Confidence 4445558999999998765 44443 78899999998643 445566554 4788999976 6678889999998876
Q ss_pred EEcCCc
Q 001176 656 LANSDG 661 (1132)
Q Consensus 656 w~~~~~ 661 (1132)
-.+.++
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 555544
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=8.1e-21 Score=194.39 Aligned_cols=241 Identities=12% Similarity=0.159 Sum_probs=189.7
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeee------------------eecccCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLE------------------IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~------------------l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
|+++|.|+.|..|.|||+.-...+.+... -.+|+..|.+++|+..-++ .|+|||.|.+|++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEEE
Confidence 67999999999999999864322222112 2379999999999988877 8999999999999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
||+.+|++..++..|...|.++.|+|... .+|++|+.|++|.+.|.+........-.-.+.|-.++|.|.....+.++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 99999999999999999999999998754 89999999999999999954333322224567889999998877666653
Q ss_pred CCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 559 SKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
.+|+++-+|++. ++++.+++.|.+ .|.++++++.- ..+++++.|+.|++|++............-..+...|.+
T Consensus 350 ---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~ 425 (463)
T KOG0270|consen 350 ---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFA 425 (463)
T ss_pred ---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecc
Confidence 489999999986 589999999998 89999998865 567779999999999987644432222111122456777
Q ss_pred EcCC-CCEEEEEeCCCcEEEEEcCCcce
Q 001176 637 FNKE-GSLLAVTTSDNGIKILANSDGVR 663 (1132)
Q Consensus 637 ~s~~-~~~l~~~~~dg~i~iw~~~~~~~ 663 (1132)
+.|+ .-.++.|+..+.+++||+.+...
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred cCCCcceEEEecCccceEEEeecccChh
Confidence 7774 34678888888999999988733
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.4e-19 Score=176.36 Aligned_cols=253 Identities=13% Similarity=0.197 Sum_probs=193.3
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecC-CCceeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 477 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~-~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~ 477 (1132)
-.+|.+-|.|+.|.+-|+++|+|+.|++|+|||.+. .....+....+.|.+.|..+.|.+- |+ .+++|+.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 457999999999999999999999999999999544 3445666678899999999999764 55 899999999999
Q ss_pred EEECCC------C---eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE------ec-------
Q 001176 478 VWDVVA------G---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD------YD------- 535 (1132)
Q Consensus 478 vwd~~~------~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~------~~------- 535 (1132)
||.-.. + ....++......|+.++|.|..-|-.+++++.||.+|||+.-....... +.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 1 1234666778899999999998889999999999999998755433221 11
Q ss_pred CCCCeEEEEEEcCC---CCEEEEEecC-CCCCCeEEEEeCCCCc----eeeeeccccCCceEEEEEeCCC----CEEEEE
Q 001176 536 APGNWCTMMAYSAD---GTRLFSCGTS-KEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTR----NRFLAA 603 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~---~~~l~~~~~~-~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~----~~l~~~ 603 (1132)
.+..+..|+.|+|. ..+|+.++.+ ....+.++||....+. .+.++.+|.+ +|+.++|.|+- ..++++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 23346789999874 3567777642 1223467777765432 3456677777 99999999974 568889
Q ss_pred EcCCeEEEEECCCCe--------------------eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 604 GDEFQIKFWDMDNMN--------------------MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 604 ~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
+.|| |+||++.... .+..+.. |...|..+.|+-.|..|++.++||.||+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~--H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDD--HNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccC--CCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999987311 2223333 45589999999999999999999999999764
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=9.7e-20 Score=184.43 Aligned_cols=304 Identities=17% Similarity=0.224 Sum_probs=221.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
...+|..+.|.+++...+|||+.|..|+||.+..+..-... . ...-...+..|...|++|.|+|+|++||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-~---------~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-M---------KVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-e---------eEEEeecccCCcceeEEEEEcCCcCeee
Confidence 45799999999988757999999999999999866543210 0 0112234788999999999999999999
Q ss_pred EEeCCCeEEEEEec--------C-----CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE
Q 001176 422 VAFSKHIVHLYTYN--------P-----TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 488 (1132)
Q Consensus 422 s~~~dg~i~iwd~~--------~-----~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~ 488 (1132)
+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++-|..+++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 3 222344557889999999999999999 89999999999999999999999
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec-------------------CCC----CeEEEEE
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------------------APG----NWCTMMA 545 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------------------~~~----~~v~~~~ 545 (1132)
.+.+|...|..++|.|-. +++++-+.|...+.+.+...+...... .|. .-...++
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 999999999999998876 899999999877776654332221110 011 1345678
Q ss_pred EcCCCCEEEEEecCCCC-----CCeEEEEeCCC-CceeeeeccccCCceEEEEEeCC-----------------CCEEEE
Q 001176 546 YSADGTRLFSCGTSKEG-----ESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTT-----------------RNRFLA 602 (1132)
Q Consensus 546 ~s~~~~~l~~~~~~~~~-----~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~ 602 (1132)
|+|||..+++....-+- -+..++++-.. .++...+.+... ....+.|+|- -+.+++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 99999999865431111 22344554332 223333443333 3444444431 122333
Q ss_pred EEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 603 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 603 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
......|++||.++..++.....- +...++.++|++||..|+..+.||...+..++..
T Consensus 317 iAt~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IATKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EeecceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 344668999999998888776432 2458999999999999999999998888777655
No 152
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=6.2e-20 Score=194.02 Aligned_cols=329 Identities=12% Similarity=0.240 Sum_probs=234.9
Q ss_pred eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCC--EEEEEeCCCcE
Q 001176 576 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVTTSDNGI 653 (1132)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i 653 (1132)
+-..+.+|.+ .|.++...|.|.+|++|+.||+|+||.+.+|.++.+....+ .|.+++|+|.+. .||++..+ .+
T Consensus 392 ~~lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred eeeeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecC-ce
Confidence 3345778887 89999999999999999999999999999999999998754 689999999654 45555444 46
Q ss_pred EEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccc
Q 001176 654 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 733 (1132)
Q Consensus 654 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1132)
.+.+..-|.++.... ..... +-.|
T Consensus 467 ~ivnp~~G~~~e~~~---t~ell---------------------------~~~~-------------------------- 490 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGP---TKELL---------------------------ASAP-------------------------- 490 (733)
T ss_pred EEeCccccchhhhcc---hhhhh---------------------------hcCC--------------------------
Confidence 665543331111100 00000 0000
Q ss_pred ccccccccCceeeeecCCCCCCC--cceEEecCCcccccceEEEEEecCCceEEeeccc---ceeEEEeeccccCCCCCc
Q 001176 734 KPRVAEDVDKIKSWRIPDISDPS--QIKALRLPDSIAASKVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGK 808 (1132)
Q Consensus 734 ~~~~~~~~~~v~~w~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~ 808 (1132)
.....+..+..|.-....... .+..+. |...|..+.|+..|.+|++...+ ..|.|+.+.....
T Consensus 491 --~~~~p~~~~~~W~~~~~~e~~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----- 558 (733)
T KOG0650|consen 491 --NESEPDAAVVTWSRASLDELEKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----- 558 (733)
T ss_pred --CccCCcccceeechhhhhhhccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc-----
Confidence 001112455566544322211 222222 67789999999999999987664 4566665542211
Q ss_pred cccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeC
Q 001176 809 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 888 (1132)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 888 (1132)
. ..+.- . .+.|.++.|+|...++++++...|++||+..+.+++.+......|..++.+|
T Consensus 559 -----------------Q-~PF~k--s-kG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 559 -----------------Q-SPFRK--S-KGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred -----------------c-Cchhh--c-CCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 1 11211 1 5678999999999999999999999999999988888888888999999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcccc-eeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccccc----ceeeeC
Q 001176 889 QDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK----SRFIQA 963 (1132)
Q Consensus 889 ~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~----~~~~~~ 963 (1132)
.|..|+.|+.|+.+..||+.-+ +..+++..|...+++++|++.-.++++|+.||++.++.-.-...+. ...+..
T Consensus 618 -~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 618 -NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred -CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 8999999999999999999854 6778899999999999999999999999999999988543211110 011122
Q ss_pred CCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001176 964 PAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1041 (1132)
Q Consensus 964 ~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vw 1041 (1132)
+.||.. .....|..+.|.|...+|++++.||+|++|
T Consensus 697 L~gH~~------------------------------------------~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 697 LRGHEK------------------------------------------TNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCcee------------------------------------------ecccceEeecccCCCceEEecCCCceEEee
Confidence 222210 003458889999999999999999999998
No 153
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.2e-21 Score=210.17 Aligned_cols=245 Identities=13% Similarity=0.214 Sum_probs=195.5
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCC---CccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCeE
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGS---RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 420 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 420 (1132)
....|+|+.--..+|||++..|.|.+||+.. .+.+ .++..|+..|.++.|++ ...+|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l-------------------~~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL-------------------TVFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhh-------------------hHhhhhccceeeeeeccCCccEE
Confidence 4566788865556899999999999999986 2222 23778999999999999 46789
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEecCCCCCeEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYS 499 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~ 499 (1132)
++|+.||+|++||++..+... ++.+....|.+|.|+|...+ .++++.+.|.+.+||++.. ++...+.+|.++|.+
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 999999999999999876554 56678889999999997655 8999999999999999864 556788899999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-CCeEEEEEEcCCCCE-EEEEecCCCCCCeEEEEeCCCCc-e
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGA-I 576 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~-~ 576 (1132)
+.|+| ++.+|+||+.|++|+|||+.+.........+ ..++.++.|-|+..+ |++++. -.+-.|++||++..- +
T Consensus 226 ~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 226 LNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIP 301 (839)
T ss_pred EeecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccc
Confidence 99999 4589999999999999999876654444433 458999999998765 555554 246779999998654 5
Q ss_pred eeeeccccCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCC
Q 001176 577 KRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 617 (1132)
..++..|.. .++.++|.. |...+.+++.||.|..-.++++
T Consensus 302 ~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 567778877 788899965 3456777888888776555543
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=1.1e-19 Score=178.82 Aligned_cols=296 Identities=17% Similarity=0.272 Sum_probs=215.6
Q ss_pred ceEEeec--CCCCeeEEEEcc----CCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCe
Q 001176 335 TVVRTLN--QGSNVMSMDFHP----QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 408 (1132)
Q Consensus 335 ~~~~~l~--h~~~V~~~~~sp----dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 408 (1132)
++...+. |+.+|..++|.+ +...++|+.+ .+.+.||+......+. -++...-..|...-
T Consensus 28 k~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esf 92 (385)
T KOG1034|consen 28 KYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--------------LLQSYADEDHDESF 92 (385)
T ss_pred EeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--------------eeeeccCCCCCcce
Confidence 3444444 889999999995 3334667665 4688999886543211 01111122477888
Q ss_pred EEEEEcCCC----CeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001176 409 NRCVWGPDG----LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 484 (1132)
Q Consensus 409 ~~v~~spdg----~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~ 484 (1132)
..++|+-|. .++|+|+.-|.|+|.|+.+++... .+.+|...|+.+.|.|+..+ +++++|.|.+|++|++++.
T Consensus 93 ytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 93 YTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred EEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCC
Confidence 899998753 378999999999999999988766 68899999999999999887 8999999999999999999
Q ss_pred eEEEEe---cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE----------------------------E
Q 001176 485 RKQYTF---EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----------------------------D 533 (1132)
Q Consensus 485 ~~~~~~---~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----------------------------~ 533 (1132)
.++..| .+|.+.|.++.|++++ .+|++++.|.++++|++...+-.. .
T Consensus 169 ~Cv~VfGG~egHrdeVLSvD~~~~g--d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 169 VCVAVFGGVEGHRDEVLSVDFSLDG--DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred eEEEEecccccccCcEEEEEEcCCC--CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 999877 4699999999998755 799999999999999987322110 0
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC-CCce-------------eeeeccccCCceEE--EEEeCCC
Q 001176 534 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAI-------------KRTYSGFRKRSLGV--VQFDTTR 597 (1132)
Q Consensus 534 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-------------~~~~~~~~~~~v~~--~~~~~~~ 597 (1132)
...|...|-|+.|- |+++++-+ .++.|..|... -++. +..+..... .+.- .+|.|-+
T Consensus 247 ~diHrnyVDCvrw~--gd~ilSks----cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~ 319 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF--GDFILSKS----CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQ 319 (385)
T ss_pred cccccchHHHHHHH--hhheeecc----cCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHH
Confidence 11222333344432 45666654 36689999872 1111 122222221 3333 4566777
Q ss_pred CEEEEEEcCCeEEEEECCCCee--EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 598 NRFLAAGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
+.|+.|...|.|++||++..++ ..++..+.....|...+|+.||..|+...+|++|.-||.
T Consensus 320 ~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 320 KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 8999999999999999987665 334444455568999999999999999999999999985
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.5e-21 Score=219.12 Aligned_cols=251 Identities=15% Similarity=0.271 Sum_probs=206.9
Q ss_pred CcCeEEEEEcCCCCe----EEEEeCCCeEEEEEecC---CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEE
Q 001176 405 AISVNRCVWGPDGLM----LGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 477 (1132)
Q Consensus 405 ~~~V~~v~~spdg~~----las~~~dg~i~iwd~~~---~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~ 477 (1132)
...-+.++|.+.|.. ||.|..||.|.+||... +...........|.+.|..+.|++...+ ++++|+.||.|.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~ 142 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEIL 142 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEE
Confidence 456788999998775 88899999999999876 4444444467789999999999999877 899999999999
Q ss_pred EEECCCCeEEEEec--CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--eEEEEEEcCCCC-E
Q 001176 478 VWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGT-R 552 (1132)
Q Consensus 478 vwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~-~ 552 (1132)
|||+.+-+.-.++. .....|.+++|+.. ..++|++++.+|.+.|||++..+.+..+..+.+ .+..++|+|+.. .
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 99998865544442 24578999999754 347899999999999999999988887766655 578999999875 4
Q ss_pred EEEEecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCC
Q 001176 553 LFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
+++++ +.|+...|.+||++. ...++.+++|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+.
T Consensus 222 l~~As-~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-- 297 (1049)
T KOG0307|consen 222 LLVAS-GDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN-- 297 (1049)
T ss_pred eeeec-CCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--
Confidence 55554 445688999999885 457788888887 79999999977 7888899999999999999999999987543
Q ss_pred CcceEEEcC-CCCEEEEEeCCCcEEEEEcCCc
Q 001176 631 ASPRLRFNK-EGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 631 ~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+..+.|+| +...+++++.||.|.|+.+.+.
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 789999999 4558999999999999998765
No 156
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=5.4e-19 Score=188.42 Aligned_cols=415 Identities=13% Similarity=0.155 Sum_probs=282.0
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1132)
.|..++|-|||..|+.+. +.++.+||.+.|..+.++++|.+ .|.+++|+.||+.+++|+.|..|.+|+..-...
T Consensus 14 ci~d~afkPDGsqL~lAA-----g~rlliyD~ndG~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----GSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-----CCEEEEEeCCCcccccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 788999999999888775 45699999999999999999998 899999999999999999999999998653222
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccc
Q 001176 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 699 (1132)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 699 (1132)
+. . .|...|.|+.|+|-...|++++-. ..-+|..... . + ..
T Consensus 88 Lk-Y---SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~-V---~K----------------------------- 128 (1081)
T KOG1538|consen 88 LK-Y---SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-S-V---SK----------------------------- 128 (1081)
T ss_pred ee-e---ccCCeeeEeecCchHHHhhhcchh-hccccChhhh-h-H---Hh-----------------------------
Confidence 22 1 234589999999988889888754 4556654322 0 0 00
Q ss_pred cccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEec
Q 001176 700 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 779 (1132)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 779 (1132)
.....++.+.+|+.
T Consensus 129 ------------------------------------------------------------------~kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 129 ------------------------------------------------------------------HKSSSRIICCSWTN 142 (1081)
T ss_pred ------------------------------------------------------------------hhhheeEEEeeecC
Confidence 01345688999999
Q ss_pred CCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC-----CEEEE
Q 001176 780 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND-----SYVMS 854 (1132)
Q Consensus 780 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg-----~~la~ 854 (1132)
||++++.|-.+|+|.+-+- .|+.........+. ..+|.+++|+|.. ..+++
T Consensus 143 DGqylalG~~nGTIsiRNk-----------------------~gEek~~I~Rpgg~-Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 143 DGQYLALGMFNGTISIRNK-----------------------NGEEKVKIERPGGS-NSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred CCcEEEEeccCceEEeecC-----------------------CCCcceEEeCCCCC-CCCceEEEecCCCCCCccceEEE
Confidence 9999999999999998632 22211111121224 7899999999954 35666
Q ss_pred ee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCC
Q 001176 855 AS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 933 (1132)
Q Consensus 855 ~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 933 (1132)
.+ ..++.+|.++ |+.+..-+.-.-...|+.+.+ +|.++..|+.|+.+.+|. ..|-.+.++-....-|+.++..|++
T Consensus 199 ~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNs 275 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNS 275 (1081)
T ss_pred EeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCC
Confidence 66 6677777774 555544444445567899999 999999999999999997 4566777777677889999999999
Q ss_pred CEEEEEcCCCcEEEEECCCccccc-------------ceeeeCCCCCC--------------------CCC--CCceeEE
Q 001176 934 NALVSSGADAQLCMWSIDKWEKLK-------------SRFIQAPAGRQ--------------------SPL--VGETKVQ 978 (1132)
Q Consensus 934 ~~l~s~~~D~~i~iwd~~~~~~~~-------------~~~~~~~~~~~--------------------~~~--~~v~~~~ 978 (1132)
++++.|+.||+|.-|++.....-. ...++.+.... ... ..|.--.
T Consensus 276 Q~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYe 355 (1081)
T KOG1538|consen 276 QYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYE 355 (1081)
T ss_pred ceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEe
Confidence 999999999999999875432100 00000000000 000 0000000
Q ss_pred EC-------------------------CCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEc--cCC-CEEE
Q 001176 979 FH-------------------------NDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYS--CDG-LLVY 1030 (1132)
Q Consensus 979 ~s-------------------------~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s--~dg-~~la 1030 (1132)
.+ --+.+++.+.+..+..+|..+-..+.|... +-|.-+... |-| .-|+
T Consensus 356 l~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~----S~iRYikV~GGP~gREgL~ 431 (1081)
T KOG1538|consen 356 LYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQME----SLIRYIKVIGGPPGREGLL 431 (1081)
T ss_pred ccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHH----HHHHhhhhhcCCCCcceeE
Confidence 00 013445556677777788766555555331 222222221 333 3588
Q ss_pred EEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccccCCCC
Q 001176 1031 AGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPS 1109 (1132)
Q Consensus 1031 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~~~~~ 1109 (1132)
.|..+|.|.-.=+++.-++-.. ..-..|.|+..+. ....|++-...++..++|+.++|-.++.|.-
T Consensus 432 vGlknGqV~kiF~dN~~PiLl~------------~~~tAvrClDINA-~R~kLAvVDD~~~c~v~DI~t~elL~QEpg~ 497 (1081)
T KOG1538|consen 432 VGLKNGQVLKIFVDNLFPILLL------------KQATAVRCLDINA-SRKKLAVVDDNDTCLVYDIDTKELLFQEPGA 497 (1081)
T ss_pred EEecCCcEEEEEecCCchhhee------------cccceeEEeeccC-CcceEEEEccCCeEEEEEccCCceEeecCCC
Confidence 8888887654444433222111 2235677888777 6678999999999999999999988877653
No 157
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.5e-21 Score=209.17 Aligned_cols=233 Identities=11% Similarity=0.220 Sum_probs=208.6
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
|...|.|+..-..++ .+++|+.|..+-+|.+..-..+. .+.+|+.+|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhhc
Confidence 777888888866666 79999999999999886544332 2678999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+|+.+|+|++||++.++.++ +|.+|...+..+.|+|-+. ++++|+.|+.+++||++...+.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999988776 7889999999999999999 789999999999999998889999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
|+|++ .+++.++.|.++++||...++....+..|.+.+.++.|+|..-.++.|+. |+++++||+++.+.+....
T Consensus 162 lsP~G--r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSPDG--RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ecCCC--ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 98854 89999999999999999999999999999999999999999888888875 7889999999988888777
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcC
Q 001176 582 GFRKRSLGVVQFDTTRNRFLAAGDE 606 (1132)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~d 606 (1132)
.... .|.+..|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7655 79999999999988887644
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=2.7e-19 Score=175.99 Aligned_cols=300 Identities=16% Similarity=0.206 Sum_probs=209.7
Q ss_pred cccceEEEEEec----CCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEE
Q 001176 768 AASKVVRLIYTN----SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 843 (1132)
Q Consensus 768 ~~~~i~~~~~s~----~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~ 843 (1132)
|...|..++|++ +...+++......+.+|...... .+ .++.. .....| +.....+
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~-----------~i--------r~lq~-y~D~d~-~Esfytc 95 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG-----------GI--------RLLQS-YADEDH-DESFYTC 95 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc-----------ce--------eeeee-ccCCCC-CcceEEE
Confidence 667788888873 33445666666678888765321 00 11111 111124 6677788
Q ss_pred EEeeCC----CEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeee-
Q 001176 844 ALSKND----SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL- 917 (1132)
Q Consensus 844 ~~s~dg----~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l- 917 (1132)
+|+-|- .++|+|+ -|.|+|.|+.++++...+.+|..+|+.|.|.|...++|++++.|.+|++|++++..++..+
T Consensus 96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 887643 3677777 7999999999999999999999999999999987899999999999999999999999886
Q ss_pred --ccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeC---CCCCCC--C---------------CCCce
Q 001176 918 --KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA---PAGRQS--P---------------LVGET 975 (1132)
Q Consensus 918 --~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~---~~~~~~--~---------------~~~v~ 975 (1132)
.+|.+.|.++.|+++|.+++|+|.|.++++|++...+......... .++... + ...|-
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 6899999999999999999999999999999998543221111100 000000 0 01111
Q ss_pred eEEECCCCcEEEE-EeCCeEEEEeC-CCCce-eecCCC----------CCCCCCeEEEEEc--cCCCEEEEEecCCcEEE
Q 001176 976 KVQFHNDQTHLLV-VHESQISVYDS-KLECS-RSWSPK----------DALPAPISSAIYS--CDGLLVYAGFCDGAIGV 1040 (1132)
Q Consensus 976 ~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~-~~~~~~----------~~h~~~i~~i~~s--~dg~~las~~~dg~i~v 1040 (1132)
++.| -|.++++ +.++.|..|.. +.+.- ....+. ..-...|.-+.|+ |-++.||.|.+.|.|++
T Consensus 256 Cvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 256 CVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 1111 1567777 77889999987 22111 111111 1113456666665 55889999999999999
Q ss_pred EeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1041 FDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1041 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
||++..+....- ....+.....|...+|+- |+.+|+..+.|+.|.=||..
T Consensus 334 wdL~~~ep~~~t-------tl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 334 WDLDNNEPPKCT-------TLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EECCCCCCccCc-------eEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 999987764221 122234456777888988 89999999999999999864
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.6e-19 Score=186.45 Aligned_cols=293 Identities=17% Similarity=0.257 Sum_probs=213.8
Q ss_pred cccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceE-EeecccceeEEEeeccccCCCCCcccccc
Q 001176 735 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSL-LALASNAVHKLWKWQRTERNPSGKATANV 813 (1132)
Q Consensus 735 ~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 813 (1132)
..++.....+++||+............+ ....+.++.|+.....+ +..+.|..+++|.-..
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g------------- 66 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDG------------- 66 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccC-------------
Confidence 3455566789999998755433332222 12237788887766432 3345578888885321
Q ss_pred ccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCC
Q 001176 814 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 892 (1132)
Q Consensus 814 ~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~ 892 (1132)
.++++......+ ...-.|++......|+++|+ .+.|+|||++...+.+.+++|...|+++.+.- ...
T Consensus 67 -------~~~~Vp~~~k~~----gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~De 134 (673)
T KOG4378|consen 67 -------KTPEVPRVRKLT----GDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDE 134 (673)
T ss_pred -------CCCccceeeccc----cchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccc
Confidence 122222221222 22445565555668999998 89999999998788888999999999999998 778
Q ss_pred eEEEEeCCCcEEEEEcccceeeeeeccccC-CeeEEEEcCCCCE-EEEEcCCCcEEEEECCCcccccceeeeCCCCCCCC
Q 001176 893 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQN-RITGLAFSPTLNA-LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 970 (1132)
Q Consensus 893 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~-l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 970 (1132)
+||+++..|.|.|..+.++.....|....+ .|.-+.|||..++ |.+++.+|.|.+||+..... .......|.
T Consensus 135 yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~Hs-- 208 (673)
T KOG4378|consen 135 YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHS-- 208 (673)
T ss_pred eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhcc--
Confidence 999999999999999999887777764434 4568899998765 66789999999999987442 223334444
Q ss_pred CCCceeEEECCCCcEEEE--EeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcce
Q 001176 971 LVGETKVQFHNDQTHLLV--VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1048 (1132)
Q Consensus 971 ~~~v~~~~~s~dg~~l~~--~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~ 1048 (1132)
.+...++|+|....|++ |.|+.|.+||+..+........ ..+.++++|+++|.+|++|+..|.|..||++..+.
T Consensus 209 -AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 209 -APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred -CCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 56788999998877666 6899999999943332222222 67899999999999999999999999999996543
Q ss_pred ecccCCCccccccccCCCCCCcEEEEeCC
Q 001176 1049 RCRIGPSAYIPTYAVSSNTAHPLVIAPHP 1077 (1132)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 1077 (1132)
|..+.+.|...|++++|-|
T Consensus 285 ----------Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 285 ----------PVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred ----------CceEeeecccceeEEEeee
Confidence 4445578899999999988
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=9.4e-17 Score=188.32 Aligned_cols=371 Identities=23% Similarity=0.406 Sum_probs=280.8
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCC-ceeeeeeeeccc-CCEEEEEE-ecCCCcEEEEE-EcCCCcE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHV-GGVNDIAF-AHPNKQLCIVT-CGDDKMI 476 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~-~~~~~~~l~~h~-~~v~~v~~-s~d~~~~~l~s-~~~dg~v 476 (1132)
...|...+.++.+.+++..++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ ++++.. .++. +..|+.+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 136 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTV 136 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcce-EEeccCCCCccE
Confidence 45689999999999999999999999999999999876 333 344433 36777777 777763 3344 4459999
Q ss_pred EEEECCC-CeEEEEecCCCCCeEEEEeeccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCC-EE
Q 001176 477 KVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT-RL 553 (1132)
Q Consensus 477 ~vwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 553 (1132)
.+||... ......+..|...|..++|++.. ..+++++. |+.+++|+.........+..|...+.+++|+|++. .+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 9999988 78888999999999999998866 57888875 99999999998778888888999999999999998 44
Q ss_pred EEEecCCCCCCeEEEEeCCCCceee-eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee-EEEEeCCCCCCC
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPA 631 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 631 (1132)
++++ .++.+++||...+.... .+.+|.. .. ...|++++..+++++.|+.+++|+...... +..+..| ...
T Consensus 215 ~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~ 286 (466)
T COG2319 215 ASGS----SDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSS 286 (466)
T ss_pred EEec----CCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC--Ccc
Confidence 4433 37789999988888877 6787776 33 338999998888999999999999987665 4444333 458
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCC
Q 001176 632 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 711 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 711 (1132)
+.++.|.|++..+++++.|+.+.+|+..+... .....
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~------------------------------------------ 323 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKL-LSSLT------------------------------------------ 323 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCce-EEEee------------------------------------------
Confidence 89999999888888898898899997765511 11000
Q ss_pred CCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccc
Q 001176 712 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 791 (1132)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 791 (1132)
..
T Consensus 324 -----------------------------------------------------~~------------------------- 325 (466)
T COG2319 324 -----------------------------------------------------LK------------------------- 325 (466)
T ss_pred -----------------------------------------------------ec-------------------------
Confidence 00
Q ss_pred eeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEe-e-CCeEEEEECCCCe
Q 001176 792 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA-S-GGKVSLFNMMTFK 869 (1132)
Q Consensus 792 ~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~-s-dg~i~vwd~~~~~ 869 (1132)
.| ...+..+.+.+++..++.+ . |+.+.+|+.....
T Consensus 326 ------------------------------------------~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 326 ------------------------------------------GH-EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred ------------------------------------------cc-CCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 01 2234455552222444444 3 6677778877666
Q ss_pred EEEEeeCCCCCeEEEEEeCCCCCeEEE-EeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEE
Q 001176 870 VMTMFMSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948 (1132)
Q Consensus 870 ~~~~~~~~~~~i~~l~~sp~~~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iw 948 (1132)
........ ..+..+.+.+ + ..+.. +..++.+.+|+............+...+....+++++..+++++.++.+++|
T Consensus 363 ~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (466)
T COG2319 363 PLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439 (466)
T ss_pred eeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEE
Confidence 22222222 2288899988 7 55554 7899999999999888777666554788999999999999999999999999
Q ss_pred ECCC
Q 001176 949 SIDK 952 (1132)
Q Consensus 949 d~~~ 952 (1132)
+...
T Consensus 440 ~~~~ 443 (466)
T COG2319 440 DLKT 443 (466)
T ss_pred eccC
Confidence 9987
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=5.5e-19 Score=173.22 Aligned_cols=289 Identities=13% Similarity=0.183 Sum_probs=211.3
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc-------CCC
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-------PDG 417 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------pdg 417 (1132)
-...+.|||||. .+.+-+.|..+.+|++...-.-....-. ...+.+..+--.....|...+|- |+.
T Consensus 51 f~kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 51 FLKGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGP------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred hhccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCc------cccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence 456789999999 5777789999999998642111000000 00011111111234567777774 577
Q ss_pred CeEEEEeCCCeEEEEEecCCCceeeeeeeecccC---CEEEEEEecCCCcEEEEEEcCCCcEEEEEC-CCCeEE--EEe-
Q 001176 418 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-VAGRKQ--YTF- 490 (1132)
Q Consensus 418 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~---~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~-~~~~~~--~~~- 490 (1132)
.++|+.+.+.-|++||.-+|+..... ....|.. ...+++|+|||. .|+. +..+.|+++|+ +.|+.- +.-
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeccccCceeeeeccccccccch-hhhhhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhh
Confidence 89999999999999999998754322 2223443 446899999999 5665 45789999998 555421 211
Q ss_pred ----cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001176 491 ----EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 566 (1132)
Q Consensus 491 ----~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1132)
.+..+-+.+++|+|... ..++.++...++-+|.-...++...+.+|.+.|+.++|.++|+.|.+++. .+..|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeE
Confidence 13467788999999754 68999999999999998989999999999999999999999999999985 46679
Q ss_pred EEEeCCC-CceeeeeccccCCceEE--EEEeCCCCEEEEEEcCCeEEEEECCC-CeeEEEEeCCCCCCCcceEEEcCCCC
Q 001176 567 VEWNESE-GAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGS 642 (1132)
Q Consensus 567 ~~wd~~~-~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1132)
..||++. +.++..+..|....-.. ....|++++|++|+.||.|++||+.+ +..+..+..+.. .++.++++|--.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mp 353 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMP 353 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccc
Confidence 9999985 55666666664422122 45578899999999999999999998 776777766644 799999999988
Q ss_pred EEEEEeCC
Q 001176 643 LLAVTTSD 650 (1132)
Q Consensus 643 ~l~~~~~d 650 (1132)
++++++..
T Consensus 354 ilatssGq 361 (406)
T KOG2919|consen 354 ILATSSGQ 361 (406)
T ss_pred eeeeccCc
Confidence 88877654
No 162
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=3.2e-16 Score=183.82 Aligned_cols=287 Identities=25% Similarity=0.444 Sum_probs=220.4
Q ss_pred cCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCc-cccccceeeeecccccccccccccCCCC-cCeEEEEE-cCCC
Q 001176 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVW-GPDG 417 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~-spdg 417 (1132)
.|...|.++.|.+.+. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ ++++
T Consensus 63 ~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 122 (466)
T COG2319 63 GHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSSPDG 122 (466)
T ss_pred eccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEECCCc
Confidence 4888999999999998 57888889999999998875 2221 22222 36777777 8888
Q ss_pred C-eEEEEeC-CCeEEEEEecC-CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC-CCcEEEEECCCCeEEEEecCC
Q 001176 418 L-MLGVAFS-KHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYTFEGH 493 (1132)
Q Consensus 418 ~-~las~~~-dg~i~iwd~~~-~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~h 493 (1132)
. .++..+. |+.+.+|+... ..... .+..|...|.+++|+|++. .+++++. |+.+++|++..++.+..+.+|
T Consensus 123 ~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (466)
T COG2319 123 NSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLAGH 197 (466)
T ss_pred ceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeeccC
Confidence 8 5555444 99999999997 43333 5778999999999999998 7888875 999999999999999999999
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 494 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
...|.+++|.|.+. ..+++++.|+.|++||...+.... .+..|.... ...|++++..+++++. ++.+++|+..
T Consensus 198 ~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~~~~~ 271 (466)
T COG2319 198 TDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRLWDLR 271 (466)
T ss_pred CCceEEEEEcCCcc-eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEEeeec
Confidence 99999999985442 255556999999999888666665 566676664 3389999988886654 7889999998
Q ss_pred CCce-eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe--CCCCCCCcceEEEcCCCCEEEEE-e
Q 001176 573 EGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD--ADGGLPASPRLRFNKEGSLLAVT-T 648 (1132)
Q Consensus 573 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~-~ 648 (1132)
.... ...+.+|.. .+.++.|.|++..+++++.|+.+.+|+..+........ .+.. .+..+.|.+++..++.+ .
T Consensus 272 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 348 (466)
T COG2319 272 SSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSLLVSGGS 348 (466)
T ss_pred CCCcEEEEEecCCc-cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCEEEEeec
Confidence 7664 444445544 89999999988888888888899999998887776665 4432 57888883332455555 5
Q ss_pred CCCcEEEEEcCCc
Q 001176 649 SDNGIKILANSDG 661 (1132)
Q Consensus 649 ~dg~i~iw~~~~~ 661 (1132)
.|+.+.+|+....
T Consensus 349 ~d~~~~~~~~~~~ 361 (466)
T COG2319 349 DDGTIRLWDLRTG 361 (466)
T ss_pred CCCcEEeeecCCC
Confidence 6777877876544
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=7e-19 Score=176.16 Aligned_cols=265 Identities=13% Similarity=0.192 Sum_probs=190.3
Q ss_pred cccceEEeecCCCCeeEEEEccCCC-eEEEEEcCCCcEEEEecCCCcc-ccccceeeeecccccccccccccCCCCcCeE
Q 001176 332 LTKTVVRTLNQGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRER-LAHKPFKVWDISAASMPLQNALLNDAAISVN 409 (1132)
Q Consensus 332 ~~~~~~~~l~h~~~V~~~~~spdg~-~lla~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 409 (1132)
.|.-....+.|.+.++.+.-++-|+ .+.|+=+..|.|.||++...-. +....+.+-+ ....+...+.+|.+.=+
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccce
Confidence 3444556667888999998888753 4566778899999999864211 1110110000 01111223678999999
Q ss_pred EEEEcCC-CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC---e
Q 001176 410 RCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---R 485 (1132)
Q Consensus 410 ~v~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~---~ 485 (1132)
.++|||- -..|++|.--+.|++|...++.-..-...+.+|+..|..++|||..+. +|+|||.||+|+|||++.+ .
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccc
Confidence 9999993 234778877788999999987654444467789999999999998877 8999999999999999988 3
Q ss_pred EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC
Q 001176 486 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 562 (1132)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1132)
++.+ +.|...|+.|.|+... .+|++|+.||+++|||++.- ..+..+..|..+|+++.|+|.....+.++. .
T Consensus 295 ~~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~ 368 (440)
T KOG0302|consen 295 AVST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---E 368 (440)
T ss_pred eeEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---C
Confidence 4444 7899999999997655 59999999999999999864 456788999999999999997655444432 3
Q ss_pred CCeEEEEeCCCCce----------------eeeeccc-cCCceEEEEEeCCC-CEEEEEEcCC
Q 001176 563 ESHLVEWNESEGAI----------------KRTYSGF-RKRSLGVVQFDTTR-NRFLAAGDEF 607 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~----------------~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg 607 (1132)
|.+|.+||+....- .+-+-.| .+..+.-+.|++.- .++++.+.||
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 78899999853211 0111122 22246667888765 4666677776
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=9.9e-20 Score=208.28 Aligned_cols=260 Identities=12% Similarity=0.154 Sum_probs=203.3
Q ss_pred eEEeecCCCCeeEEEEccCCCe---EEEEEcCCCcEEEEecCCC---ccccccceeeeecccccccccccccCCCCcCeE
Q 001176 336 VVRTLNQGSNVMSMDFHPQQQT---ILLVGTNVGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLNDAAISVN 409 (1132)
Q Consensus 336 ~~~~l~h~~~V~~~~~spdg~~---lla~g~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 409 (1132)
.+..+.-..+-+.++|.+.|.. ++|.|..||.|.+||...- .... .......|++.|.
T Consensus 57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~----------------~la~~~~h~G~V~ 120 (1049)
T KOG0307|consen 57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE----------------VLATKSKHTGPVL 120 (1049)
T ss_pred ccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchH----------------HHhhhcccCCcee
Confidence 3444555567889999998775 6999999999999998752 1111 0112567999999
Q ss_pred EEEEcCCCC-eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE
Q 001176 410 RCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 488 (1132)
Q Consensus 410 ~v~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~ 488 (1132)
.+.|++... +||+|+.||.|.|||+..-+...... -..-.+.|.+++|+..-.+ +|++++.+|.+.|||++..+.+-
T Consensus 121 gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 121 GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPII 198 (1049)
T ss_pred eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCccc
Confidence 999999655 99999999999999999754332111 1124568999999987776 79999999999999999998887
Q ss_pred EecCCCC--CeEEEEeeccCCccEEEEEecCC--eEEEEEcCCCCc-eEEecCCCCeEEEEEEcCCC-CEEEEEecCCCC
Q 001176 489 TFEGHEA--PVYSVCPHHKESIQFIFSTAIDG--KIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEG 562 (1132)
Q Consensus 489 ~~~~h~~--~v~~i~~~~~~~~~~l~s~s~dg--~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~ 562 (1132)
.+..|.+ .+..++|+|+...+++++...|+ .|.+||++.... ...+.+|...|.++.|++.+ .+|++++.
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk---- 274 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK---- 274 (1049)
T ss_pred ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----
Confidence 7766554 57789999987644444444443 499999987654 44667999999999999977 77778764
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCe
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 618 (1132)
|++|.+|+.++++.+..+....+ .+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 275 D~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 275 DNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 88899999999999999988554 899999999886 67778999999999987654
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.3e-18 Score=175.20 Aligned_cols=235 Identities=15% Similarity=0.241 Sum_probs=188.4
Q ss_pred ccCCCCcCeEEEEEcC-CCCeEEEEeCCCeEEEEEecCCCce----eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC
Q 001176 400 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 474 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~sp-dg~~las~~~dg~i~iwd~~~~~~~----~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg 474 (1132)
.+.||+++|..++|+| +...||+||.|.+|.||++..+... .....|.+|...|.-++|+|...+ .|+|++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4789999999999999 6778999999999999999876432 345578999999999999999887 789999999
Q ss_pred cEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-eEEEEEEcCCCCEE
Q 001176 475 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRL 553 (1132)
Q Consensus 475 ~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l 553 (1132)
+|.+||+.+|+.+.++. |.+.|++++|+. ||.++++++.|+.||+||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999987 999999999976 559999999999999999999988887766655 566777888998 6
Q ss_pred EEEecCCCCCCeEEEEeCCCCce---eeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCee-EEEEeCCCC
Q 001176 554 FSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM-LTTVDADGG 628 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~ 628 (1132)
++.+.++-.+.++-+||...-+. ...+.. ...|.--.+.++.+.++.+| .|+.||.|.+....+ +..+.....
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt--SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDT--SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEecc--CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 67777777889999999876442 233333 22466667888888888766 899999999987553 333333333
Q ss_pred CCCcceEEEcCCC
Q 001176 629 LPASPRLRFNKEG 641 (1132)
Q Consensus 629 ~~~v~~~~~s~~~ 641 (1132)
..+-..+.|.|..
T Consensus 309 ~epQRG~g~mPKR 321 (472)
T KOG0303|consen 309 KEPQRGMGFMPKR 321 (472)
T ss_pred CCccccccccccc
Confidence 3455677777743
No 166
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.82 E-value=1.8e-18 Score=169.80 Aligned_cols=409 Identities=12% Similarity=0.125 Sum_probs=256.7
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE
Q 001176 410 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 410 ~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 489 (1132)
-+.|||+|+++|+++.- .+.|-|.++-+..+. ..--..|..+.|..|... .|.....|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql----f~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL----FLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHH----HHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 47899999999999765 788888887554331 122457888999998875 566678899999999999998889
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001176 490 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 569 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 569 (1132)
+.....++.+++|+|++. .+|.+...|-.|.+|.+.+...... ......+..++|+|||++.+.++. +|-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeec-ccHHHHHHHH
Confidence 988899999999998754 6788888899999999987665443 223345688999999999998864 1111122222
Q ss_pred eCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001176 570 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 647 (1132)
.-..-.+++.+..... ..+.+.|+|||+.+++-. -+-.|+.|... -.+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEee
Confidence 2223344555555444 567799999999887643 23333333221 147889999999999999
Q ss_pred eCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCc
Q 001176 648 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 727 (1132)
Q Consensus 648 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1132)
+.|+.+|+.+--+- +.+..+- |...+.
T Consensus 229 syD~~lrvlnh~tW-k~f~efl-hl~s~~--------------------------------------------------- 255 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW-KPFGEFL-HLCSYH--------------------------------------------------- 255 (447)
T ss_pred ccchhhhhhceeee-eehhhhc-cchhcc---------------------------------------------------
Confidence 99999999875433 2111110 100000
Q ss_pred ccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCC
Q 001176 728 SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSG 807 (1132)
Q Consensus 728 ~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 807 (1132)
+... ..++. +. ... -.-...++.|.|..- ...+|....... +.
T Consensus 256 ----dp~~--------~~~~k-e~------~~~-------~ql~~~cLsf~p~~~---------~a~~~~~se~~Y--E~ 298 (447)
T KOG4497|consen 256 ----DPTL--------HLLEK-ET------FSI-------VQLLHHCLSFTPTDL---------EAHIWEESETIY--EQ 298 (447)
T ss_pred ----Cchh--------hhhhh-hh------cch-------hhhcccccccCCCcc---------ccCccccchhhh--hh
Confidence 0000 00000 00 000 000012333333221 001110000000 00
Q ss_pred ccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeC---CeEEEEECCCCeEEEEeeCCCCCeEEE
Q 001176 808 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG---GKVSLFNMMTFKVMTMFMSPPPAATFL 884 (1132)
Q Consensus 808 ~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sd---g~i~vwd~~~~~~~~~~~~~~~~i~~l 884 (1132)
..+ . + .....++... .+ ++ ...+.-++||+|..++|+-.| +.+.+||++..++...+. ...+|.+.
T Consensus 299 ~~~-p--v---~~~~lkp~tD-~p--nP-k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf 367 (447)
T KOG4497|consen 299 QMT-P--V---KVHKLKPPTD-FP--NP-KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAF 367 (447)
T ss_pred hhc-c--e---eeecccCCCC-CC--Cc-ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEE
Confidence 000 0 0 0000001110 11 12 456778999999999999985 569999998877655544 56789999
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcE
Q 001176 885 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 945 (1132)
Q Consensus 885 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i 945 (1132)
.|+| +...|+.......+++|.......+. ..+..-.|..+.|.-+|..++-.+.|...
T Consensus 368 ~WdP-~~prL~vctg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 368 EWDP-GRPRLVVCTGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred EeCC-CCceEEEEcCCceEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 9999 77777777777789999876534333 33344679999999999999999998743
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=4.1e-18 Score=172.75 Aligned_cols=300 Identities=18% Similarity=0.233 Sum_probs=216.8
Q ss_pred ccceEEEEEecCCc-eEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 769 ASKVVRLIYTNSGL-SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 769 ~~~i~~~~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
...+..+.|.+++. .+++++.|..|++|.+........... ......+.. | ...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~--------------V~y~s~Ls~--H-~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMK--------------VEYLSSLSR--H-TRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCcee--------------EEEeecccC--C-cceeEEEEEcC
Confidence 35688889988877 899999999999998875433211100 011112333 7 99999999999
Q ss_pred CCCEEEEee-CCeEEEEECC--------C--------CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc
Q 001176 848 NDSYVMSAS-GGKVSLFNMM--------T--------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 910 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~--------~--------~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 910 (1132)
+|..||+|+ +|.|.+|-.. + +...+.+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 999999999 6899999765 2 345667788999999999999 999999999999999999999
Q ss_pred ceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccccccee---eeCCCCCC------------CCCCCce
Q 001176 911 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF---IQAPAGRQ------------SPLVGET 975 (1132)
Q Consensus 911 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~---~~~~~~~~------------~~~~~v~ 975 (1132)
|+....+..|...|..++|.|-++++++-+.|...+.+.+.......... +....++. ....-..
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 99999999999999999999999999999999877777665433222111 01111110 0012344
Q ss_pred eEEECCCCcEEEE-E----eCCeE-----EEEeC-CC-CceeecCCCCCCCCCeEEEEEcc------------------C
Q 001176 976 KVQFHNDQTHLLV-V----HESQI-----SVYDS-KL-ECSRSWSPKDALPAPISSAIYSC------------------D 1025 (1132)
Q Consensus 976 ~~~~s~dg~~l~~-~----~d~~v-----~vwd~-~~-~~~~~~~~~~~h~~~i~~i~~s~------------------d 1025 (1132)
.++|+|||.++++ + .++.+ ++|+- .. .....+... ..+...+.|+| -
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~---~k~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP---KKPALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC---CcceEEEEeeeeEEEecccccccccccccc
Confidence 6889999999998 2 13333 44544 11 222222221 45666666665 1
Q ss_pred CCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1026 GLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1026 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
+-.+|.++ .+.|+|||.++..+++...- -|=..++.++|++ ||..|+.++.||-..+--++..|
T Consensus 312 rlvfaiAt-~~svyvydtq~~~P~~~v~n----------ihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 312 RLVFAIAT-KNSVYVYDTQTLEPLAVVDN----------IHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ceEEEEee-cceEEEeccccccceEEEee----------eeeeeecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 22344444 67899999999888877653 3446778999999 88999999999988887777766
No 168
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=2.2e-18 Score=177.09 Aligned_cols=310 Identities=12% Similarity=0.119 Sum_probs=225.4
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCeEEEEEEcCCC-CEEEE
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG----SRVDYDAPGNWCTMMAYSADG-TRLFS 555 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~-~~l~~ 555 (1132)
+.+-......+-+..+|++++|+|..+..++++|..-|.|-+||+.+.+ ....+..|..+|.++.|+|.. ..+++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 3333444556668899999999999988999999999999999996433 345778899999999999965 46666
Q ss_pred EecCCCCCCeEEEEeCCCCceeeeecc--ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee-EEEEeCCCCCCCc
Q 001176 556 CGTSKEGESHLVEWNESEGAIKRTYSG--FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPAS 632 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v 632 (1132)
.+. ||+|++-|++.+..-..+.. ... .+..+.|+.+...++.++.=|...+||.+++.. ...+..|.. .|
T Consensus 253 sSy----DGtiR~~D~~~~i~e~v~s~~~d~~-~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--KI 325 (498)
T KOG4328|consen 253 SSY----DGTIRLQDFEGNISEEVLSLDTDNI-WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--KI 325 (498)
T ss_pred ecc----CceeeeeeecchhhHHHhhcCccce-eeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--cc
Confidence 665 88999999987653333322 222 577788988888889988888999999998654 555555644 89
Q ss_pred ceEEEcC-CCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCC
Q 001176 633 PRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 711 (1132)
Q Consensus 633 ~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 711 (1132)
.+++++| ...+|++++.|++++|||++.-. +...+
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~-------~K~sp------------------------------------- 361 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLR-------GKASP------------------------------------- 361 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhc-------CCCCc-------------------------------------
Confidence 9999999 66789999999999999986431 10000
Q ss_pred CCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccc
Q 001176 712 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 791 (1132)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 791 (1132)
.+....|...|.++.|||++..|++.+.|.
T Consensus 362 --------------------------------------------------~lst~~HrrsV~sAyFSPs~gtl~TT~~D~ 391 (498)
T KOG4328|consen 362 --------------------------------------------------FLSTLPHRRSVNSAYFSPSGGTLLTTCQDN 391 (498)
T ss_pred --------------------------------------------------ceecccccceeeeeEEcCCCCceEeeccCC
Confidence 000012778899999999998899999999
Q ss_pred eeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeE
Q 001176 792 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV 870 (1132)
Q Consensus 792 ~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 870 (1132)
.|+|||... +.-|+...+.+......+ +| -.....+|.||..++++|. -..|-|+|-..++.
T Consensus 392 ~IRv~dss~--------------~sa~~~p~~~I~Hn~~t~-Rw--lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~ 454 (498)
T KOG4328|consen 392 EIRVFDSSC--------------ISAKDEPLGTIPHNNRTG-RW--LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQM 454 (498)
T ss_pred ceEEeeccc--------------ccccCCccceeeccCccc-cc--ccchhheeCCCccEEEEeccCcceeEEcCCCCEE
Confidence 999998631 112233333333221111 12 1234567999999999998 67899999999998
Q ss_pred EEEeeCCCC-CeEE-EEEeCCCCC-eEEEEeCCCcEEEEEcc
Q 001176 871 MTMFMSPPP-AATF-LAFHPQDNN-IIAIGMEDSSVQIYNVR 909 (1132)
Q Consensus 871 ~~~~~~~~~-~i~~-l~~sp~~~~-~lasg~~dg~v~iwd~~ 909 (1132)
+..+..+.. .|.+ ..|+| -+. ++|-++..|.|+||.-+
T Consensus 455 v~el~~P~~~tI~~vn~~HP-~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 455 VCELHDPESSTIPSVNEFHP-MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred eeeccCccccccccceeecc-cccceeccCCccceEEEEecC
Confidence 888766554 5665 48999 566 55555677889988643
No 169
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=174.18 Aligned_cols=245 Identities=18% Similarity=0.253 Sum_probs=191.8
Q ss_pred cCCCCcCeEEEEEcCCC--CeEEEEeCCCeEEEEEecCC-------------CceeeeeeeecccCCEEEEEEecCCCcE
Q 001176 401 LNDAAISVNRCVWGPDG--LMLGVAFSKHIVHLYTYNPT-------------GELRQHLEIDAHVGGVNDIAFAHPNKQL 465 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg--~~las~~~dg~i~iwd~~~~-------------~~~~~~~~l~~h~~~v~~v~~s~d~~~~ 465 (1132)
..+|.+.++.+.-++-| .+.|+-+..|.|.||++... ...+...++.+|.+.=..++|||-...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 45688888888888754 45666678999999998531 223455678899999999999994332
Q ss_pred EEEEEcCCCcEEEEECCCCeEE---EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCe
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNW 540 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~---~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~ 540 (1132)
.++||.--+.|++|...+|.-. ..|.+|...|..++|+|..+ ..|++||.||+|+|||++.+.. -...+.|.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 4889988899999999887654 35678999999999999877 6999999999999999998733 2344788899
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC---CceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCC
Q 001176 541 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 541 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 616 (1132)
|+.+.|+....+|++|+. +|++.|||++. ++++..|+.|.. +|+++.|+|.. ..|+++|.|..|.+||+..
T Consensus 305 VNVISWnr~~~lLasG~D----dGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGD----DGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeeEEccCCcceeeecCC----CceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999888888864 88999999985 668889998888 99999999976 5667788999999999853
Q ss_pred Cee----------------EEEEeCCCCCCCcceEEEcCC-CCEEEEEeCCCc
Q 001176 617 MNM----------------LTTVDADGGLPASPRLRFNKE-GSLLAVTTSDNG 652 (1132)
Q Consensus 617 ~~~----------------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~ 652 (1132)
..- -+.+-.|.+...+..+.|++. ..++++.+.||.
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 211 112223444557889999984 446777777753
No 170
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=3.3e-17 Score=171.13 Aligned_cols=499 Identities=11% Similarity=0.076 Sum_probs=296.6
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEE-e-----cCCCcEEEEEEcCCCcE
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-A-----HPNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~-s-----~d~~~~~l~s~~~dg~v 476 (1132)
.|...|.|+.|+.+...+.+++++..+.-||+.+.. .... .+ ....|....+ - ..+..-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 367778899999888877777555555555554432 2111 01 1111111111 0 01111167888899999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 477 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
.+-+ +.++..+.+..|.+.+.+-.|+|++ .-|++++.||.|++|.-. +..+..+......|+|++|.|+.+.++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 7888888899999999999998855 779999999999999743 33444455566789999999999888877
Q ss_pred ecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 557 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
. .+.+.+=.+.....+..++.|.+ -|.++.|++..+.+++||+|-..++||... ..+..-..|.. +|++++
T Consensus 164 ~-----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey--~ITSva 234 (737)
T KOG1524|consen 164 Q-----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEY--AITSVA 234 (737)
T ss_pred c-----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccC-cccccCChhcc--ceeeee
Confidence 4 45688888877777788888887 899999999999999999999999999764 44444444443 899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCC
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 716 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 716 (1132)
|+|+ +.++.++.. ++|+=.
T Consensus 235 ~npd-~~~~v~S~n-t~R~~~----------------------------------------------------------- 253 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARFSS----------------------------------------------------------- 253 (737)
T ss_pred eccc-cceeeeeee-eeeecC-----------------------------------------------------------
Confidence 9999 555655542 333100
Q ss_pred cccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEE
Q 001176 717 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 796 (1132)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw 796 (1132)
...+.|..++||+||..++.++..|.+.+-
T Consensus 254 --------------------------------------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 254 --------------------------------------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred --------------------------------------------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 033568899999999999999998877653
Q ss_pred eeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEee
Q 001176 797 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM 875 (1132)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~ 875 (1132)
..-.. | -+ -+.+=++.. ...|.+-|+.++.+ ..+.
T Consensus 284 ~~ieq---------------------------------~---l~-------~~n~~~t~~~r~~I~vrdV~~~v~-d~LE 319 (737)
T KOG1524|consen 284 YAIEQ---------------------------------Q---LV-------SGNLKATSKSRKSITVRDVATGVQ-DILE 319 (737)
T ss_pred eeehh---------------------------------h---hh-------hccceeEeeccceEEeehhhhhHH-HHhh
Confidence 21000 0 00 011111222 34466666665443 2222
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccc
Q 001176 876 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 955 (1132)
Q Consensus 876 ~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~ 955 (1132)
....|......- .+|+++.. ..|++|.-........+.+....+.-+.-+ ...+++ ....+|.++..+....
T Consensus 320 -~p~rv~k~sL~Y---~hLvvaTs-~qvyiys~knwntpiiidgre~tr~lieq~-ek~fli--~dgsSi~lytyegR~~ 391 (737)
T KOG1524|consen 320 -FPQRVVKFSLGY---GHLVVATS-LQVYIYSEKNWNTPIIIDGREDTRNLIEQG-EKYFLI--LDGSSIWLYTYEGRLH 391 (737)
T ss_pred -Cccceeeeeece---eEEEEEec-cEEEEEecCCccCcEEEeccccchhHhhhh-hhheEE--ecCcEEEEEEecCcee
Confidence 334555555543 24444333 257777655444333444444433222111 111222 2233455555544221
Q ss_pred ccceeeeCCCCCCCCCCCceeEEECCCCcEEEE--E-eCCeEEEEeC--CCCceeecCCCCCCCCCeEEEEEc----cCC
Q 001176 956 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV--V-HESQISVYDS--KLECSRSWSPKDALPAPISSAIYS----CDG 1026 (1132)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~-~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~i~~s----~dg 1026 (1132)
... .++|... ...+.-..|-....|+. . +...+.+||. +++....-. .-.|...|..++.. ++.
T Consensus 392 ~np----~~Pg~~~--dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk-~L~hk~~IveIAldqkG~tnD 464 (737)
T KOG1524|consen 392 LNP----RYPGSQI--DLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGK-SLRHKQQIVEIALDQKGLTND 464 (737)
T ss_pred cCC----CCCCccc--ccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCcc-ccchhhhHHHhHhhccCCCcc
Confidence 111 1111111 11111122323334444 2 2345778887 333322111 11235566666664 456
Q ss_pred CEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1027 LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1027 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
+.+|.-...+.++|=.+.....-.++- .-+.-|..++|.. ..-+++|-.|+++.||-..+-.
T Consensus 465 rkVAFiDknrdl~ItsvKrfgkee~I~-----------KiGTmVhtLawnd--ttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 465 RKVAFIDKNRDLFITSVKRFGKEEEIY-----------KIGTMVHTLAWND--TTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred ceEEEEecCCcEEEEeehhcCchhhhh-----------hhhhhhhhhhhcc--ccceeeeeccceEEEEEcCCcc
Confidence 678877777878876665422211111 1124456788874 4567889999999999987644
No 171
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.5e-18 Score=177.93 Aligned_cols=262 Identities=11% Similarity=0.143 Sum_probs=190.0
Q ss_pred CCeeEEEEccC-------CCeEEEEEcCCCcEEEEecCCCccccccceeeeeccccc------ccccccccCCCCcCeEE
Q 001176 344 SNVMSMDFHPQ-------QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAAS------MPLQNALLNDAAISVNR 410 (1132)
Q Consensus 344 ~~V~~~~~spd-------g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~h~~~V~~ 410 (1132)
.-..|++|... |+ ++|.|+.|..|.|||+.-...+. ....+.... .........+|+..|.+
T Consensus 174 afPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~ 248 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLA 248 (463)
T ss_pred CcchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHH
Confidence 34456666532 45 79999999999999986432221 000000000 00112234579999999
Q ss_pred EEEcCC-CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE-E
Q 001176 411 CVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-Y 488 (1132)
Q Consensus 411 v~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~-~ 488 (1132)
++|+.+ ...||+||.|.+|++||+.++++.. ++..|.+.|.++.|.|.... +|++|+.|++|.+.|.+..... .
T Consensus 249 Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 249 LSWNRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred HHhccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCc
Confidence 999986 4589999999999999999998765 56789999999999998776 8999999999999999853222 2
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
.+ ...+.|-.++|.+... ..++++..||+|+-+|++.. +++..+..|...|.++++++.-..+++.+. .++.+.
T Consensus 325 ~w-k~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vk 399 (463)
T KOG0270|consen 325 EW-KFDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVK 399 (463)
T ss_pred eE-EeccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEE
Confidence 22 2457799999988765 67888899999999999987 677899999999999999987765544332 488899
Q ss_pred EEeCCCCce--eeeeccccCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCeeE
Q 001176 568 EWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQIKFWDMDNMNML 620 (1132)
Q Consensus 568 ~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~ 620 (1132)
+|++..... +..-.-.-. ...|.++.|+-.+ ++.||..+.+++||+.+...+
T Consensus 400 lw~~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 400 LWKFDVDSPKSVKEHSFKLG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEeecCCCCccccccccccc-ceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999874332 221111111 4667777887655 455778888999999876544
No 172
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=2.6e-18 Score=177.55 Aligned_cols=285 Identities=12% Similarity=0.162 Sum_probs=215.0
Q ss_pred CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCe-EEEEeCCCeEEEEEecCCCc-eee
Q 001176 365 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM-LGVAFSKHIVHLYTYNPTGE-LRQ 442 (1132)
Q Consensus 365 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-las~~~dg~i~iwd~~~~~~-~~~ 442 (1132)
...++|||+...+.... + . -......+.++.|+....+ +|+.+.|..+++|.-..... +..
T Consensus 11 gd~~kl~D~s~~~~~~~--~---------~------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSE--Y---------V------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred CCceEEeecccccCccc--c---------c------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccce
Confidence 35899999876543321 0 0 0012234899999887652 33445688899997655311 111
Q ss_pred eeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001176 443 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 522 (1132)
Q Consensus 443 ~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~ 522 (1132)
...+.+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|...|+++.++... .+|++++..|.|.+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIII 147 (673)
T ss_pred eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEE
Confidence 1122222 333444444445 89999999999999999877888899999999999986544 89999999999999
Q ss_pred EEcCCCCceEEecCC-CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC-CEE
Q 001176 523 WLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRF 600 (1132)
Q Consensus 523 wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 600 (1132)
-.+.++.....+... +..|.-+.|++..+.+++... .+|.|.+||+....++..+...+..+...++|+|.. ..|
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 999888777777666 446779999999888775543 388999999998888777765555488889999976 456
Q ss_pred EEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccC
Q 001176 601 LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 678 (1132)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (1132)
++.|.|.+|++||....+....+... .+...++|+++|.+|+.|...|.|..||++..+..+..+..|...+..+
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRV 299 (673)
T ss_pred EEecccceEEEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEE
Confidence 77899999999999987777766542 2688999999999999999999999999998888888888888776654
No 173
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.7e-16 Score=173.00 Aligned_cols=537 Identities=13% Similarity=0.171 Sum_probs=307.4
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC----
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG---- 417 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg---- 417 (1132)
+...-.+++|+|.| ++|-|+. ..|.+-|..+-+.+.. +.-|...|+.+.|+|-.
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence 44557889999999 6787774 6888999888776654 55689999999998731
Q ss_pred --------CeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec---CCCcEEEEEEcCCCcEEEEECCCCeE
Q 001176 418 --------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRK 486 (1132)
Q Consensus 418 --------~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~---d~~~~~l~s~~~dg~v~vwd~~~~~~ 486 (1132)
-+||++...|.|.+||...+..+. .+..|..++.+++|-+ +.+. +|+.-....++.+|+..+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 267888889999999999876544 5778899999999976 3334 566666678999999999998
Q ss_pred EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC------CceEEecCC-CC--------------------
Q 001176 487 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL------GSRVDYDAP-GN-------------------- 539 (1132)
Q Consensus 487 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~------~~~~~~~~~-~~-------------------- 539 (1132)
............++.+.|-...++.+ -+..|.+.+.+.-.. +....+... ..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~-l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCV-LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEE-EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 88777666667778888775544444 444566555543211 111111111 00
Q ss_pred -----eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC--CEEEEEEcCCeEEEE
Q 001176 540 -----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFW 612 (1132)
Q Consensus 540 -----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iw 612 (1132)
....++|+|.-+.++.... ...+.++|++-..++....-... .+.-+.+-|++ ..+++...||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 0113456776555444443 44599999998777776655444 44456666665 678889999999999
Q ss_pred ECCCCeeE----------------EEEeCCCCCCCcceEEEcCC-CCEEEEEeCCCcEEEEEcCCcceeeeecccccccc
Q 001176 613 DMDNMNML----------------TTVDADGGLPASPRLRFNKE-GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 675 (1132)
Q Consensus 613 d~~~~~~~----------------~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 675 (1132)
-.+..... ..+..-... .....+..|. ...++.--.+|.+.+|.+.+| +..........+
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~-ri~~~~~s~~ie- 378 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNG-RIHLDYRSSSIE- 378 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcC-CcCccccccccc-
Confidence 76542211 111111111 1122222332 344444455677777777665 211110000000
Q ss_pred ccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCC
Q 001176 676 NRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDP 755 (1132)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~ 755 (1132)
T Consensus 379 -------------------------------------------------------------------------------- 378 (1062)
T KOG1912|consen 379 -------------------------------------------------------------------------------- 378 (1062)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceEEecCCcccccceEEEEEecC-----CceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccC
Q 001176 756 SQIKALRLPDSIAASKVVRLIYTNS-----GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDI 830 (1132)
Q Consensus 756 ~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 830 (1132)
-+..+.|+.+ ...++..+.||. .+.|...... ++..........
T Consensus 379 ---------------l~~pf~f~~~~~~v~k~~l~~LS~dg~-----------h~sGs~~~~~-----~p~p~~t~~~~~ 427 (1062)
T KOG1912|consen 379 ---------------LVLPFDFNLSTKLVGKTSLISLSDDGS-----------HSSGSTCVRM-----RPMPELTKVEND 427 (1062)
T ss_pred ---------------ccccccccCceeehhhccccchhhcCC-----------CCCCceeeec-----ccCcccceeecC
Confidence 0000000000 001111122210 0000000000 000000000000
Q ss_pred CCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEe---------CC
Q 001176 831 NESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM---------ED 900 (1132)
Q Consensus 831 ~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~---------~d 900 (1132)
++ +....+. -.++|.|. .|+|.++|+.++...+.+..|...|.++.|.. ..+++-.+. .-
T Consensus 428 p~-----~n~~~~~----~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~sg~vr 497 (1062)
T KOG1912|consen 428 PG-----GNTPAGT----VPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSASGGVR 497 (1062)
T ss_pred CC-----CCcccee----eeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeecccccccccee
Confidence 01 0000111 13677887 79999999999999999999999999999986 444443222 22
Q ss_pred CcEEEEEcccceee--eee-ccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeE
Q 001176 901 SSVQIYNVRVDEVK--TKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 977 (1132)
Q Consensus 901 g~v~iwd~~~~~~~--~~l-~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 977 (1132)
+.+.|-|+.+|... +.+ +....+|..+..|..|++|+..-.|.-+.+||+++......+-..- .-++.+
T Consensus 498 N~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~--------P~it~l 569 (1062)
T KOG1912|consen 498 NDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLAL--------PLITVL 569 (1062)
T ss_pred eeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcC--------CcEEEE
Confidence 35778889888432 222 2356689999999999999999999999999998755332211110 125667
Q ss_pred EEC-CCCc---------------EEEEEeCCeEEEEeCC--CCceeecCC---C-CCCCCCeEEEEEccCCCEEEEEecC
Q 001176 978 QFH-NDQT---------------HLLVVHESQISVYDSK--LECSRSWSP---K-DALPAPISSAIYSCDGLLVYAGFCD 1035 (1132)
Q Consensus 978 ~~s-~dg~---------------~l~~~~d~~v~vwd~~--~~~~~~~~~---~-~~h~~~i~~i~~s~dg~~las~~~d 1035 (1132)
.|+ |.-. ..++......+++.+. +........ . ......+-.|+| .+..|+.|..+
T Consensus 570 eWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~ 647 (1062)
T KOG1912|consen 570 EWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVE 647 (1062)
T ss_pred eecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeeccc
Confidence 776 3211 1111111223333331 111000000 0 000112233555 56689999999
Q ss_pred CcEEEEeCC
Q 001176 1036 GAIGVFDAE 1044 (1132)
Q Consensus 1036 g~i~vwd~~ 1044 (1132)
|.+.+||+.
T Consensus 648 GNl~~WDlg 656 (1062)
T KOG1912|consen 648 GNLVVWDLG 656 (1062)
T ss_pred CceeEEecc
Confidence 999999965
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=6.8e-18 Score=170.09 Aligned_cols=218 Identities=17% Similarity=0.251 Sum_probs=174.9
Q ss_pred eeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-------eEEEEecCCCCCeEEEEeeccCCccEEEEE
Q 001176 442 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFST 514 (1132)
Q Consensus 442 ~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~ 514 (1132)
....+.||+++|..++|+|-+.+ .|+|||.|.+|.||.+..+ +++..+.+|...|..++|+|... +.|+++
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsa 150 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSA 150 (472)
T ss_pred CCCCccCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhc
Confidence 33456799999999999998776 8999999999999998764 34678899999999999999865 799999
Q ss_pred ecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEe
Q 001176 515 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 594 (1132)
Q Consensus 515 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~ 594 (1132)
+.|.+|.+|++.+++....+. |...|+++.|+.||.+|++.+. |..|++||.++++.+..-.+|.+..-..+.|-
T Consensus 151 g~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl 225 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFL 225 (472)
T ss_pred cCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEe
Confidence 999999999999999999888 9999999999999999999875 77799999999999998888876555567788
Q ss_pred CCCCEEEEEE----cCCeEEEEECCCCeeEEEE-eCCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCcceeeeec
Q 001176 595 TTRNRFLAAG----DEFQIKFWDMDNMNMLTTV-DADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 595 ~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~ 668 (1132)
.++. +++.| .+..+-+||..+.+.-..+ .... ...|.---|.+|.++++.++ .|+.||.|.+.+....+..+
T Consensus 226 ~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 226 ASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred ccCc-eeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEe
Confidence 8888 55543 6788999998764432222 2222 22455556778888776555 59999999998874334333
No 175
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=5.2e-17 Score=169.63 Aligned_cols=271 Identities=15% Similarity=0.195 Sum_probs=188.5
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
|...|.|+.|+.... ++.+++ |..+.+|.-.+.+....-.. .+ ..++. ..|-++- +..=-...+.++
T Consensus 13 ~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~~~~~-----p~--df~pt---~~h~~~r-s~~~g~~~d~~~ 79 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVEVAKL-----PD--DFVPT---DMHLGGR-SSGGGKGSDTLL 79 (737)
T ss_pred cceeEEeecccccce-EEEecc-CceEEEeecccchhhhhhhC-----Cc--ccCCc---ccccccc-ccCCCCCcceEE
Confidence 666788999999887 566655 55555554433322211000 00 00000 0010000 000001234788
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
.++.||.+.|.+-... . ...+.+|.+.|.+-.|+|||. -|+|.+.||.|++|. ++|....++.....+|.|++
T Consensus 80 i~s~DGkf~il~k~~r-V---E~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 80 ICSNDGRFVILNKSAR-V---ERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred EEcCCceEEEecccch-h---hhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 8899999998875542 1 124678999999999999999 799999999999999 78877667766788999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
|.|+.+ +.+.+.+ +.+.+=-+.....+.....|.+-|.++.|++..+.++++|. |-...+||.. |..+..-.
T Consensus 153 W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~S~ 224 (737)
T KOG1524|consen 153 WAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFTSA 224 (737)
T ss_pred ECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-CcccccCC
Confidence 998865 4555544 44555556666778889999999999999999999999985 7889999965 66666666
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001176 582 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 656 (1132)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1132)
.|.- +|++++|.|+ ..++.++. .+++ +.. ...+.|..++|++||..+++|+..|.+.+=
T Consensus 225 ~~ey-~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 225 AEEY-AITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred hhcc-ceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 6665 8999999999 55555543 2333 211 123478999999999999999999887653
No 176
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.78 E-value=5e-17 Score=159.81 Aligned_cols=379 Identities=13% Similarity=0.149 Sum_probs=247.7
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEE-EEcCCeEEEEECCCCeeEE
Q 001176 543 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLT 621 (1132)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~ 621 (1132)
-.+|||+|++++++. +-++.+-|..+-+..+.|..-. .|..+.|..|..++++ ...++.|.+|++...+--.
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 357999999999997 4468888988877766666543 4667889988877776 4688899999999888888
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEE-EEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCcccc
Q 001176 622 TVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 700 (1132)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 700 (1132)
.+... ...+.++.|+|||+.+. +...+-.|.+|.+.+..-..-..
T Consensus 86 kIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-------------------------------- 131 (447)
T KOG4497|consen 86 KIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-------------------------------- 131 (447)
T ss_pred EeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--------------------------------
Confidence 77654 44789999999996554 55568899999987752111000
Q ss_pred ccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecC
Q 001176 701 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 780 (1132)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 780 (1132)
....+..++|+||
T Consensus 132 -------------------------------------------------------------------pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 132 -------------------------------------------------------------------PKTNVKGYAFHPD 144 (447)
T ss_pred -------------------------------------------------------------------cccCceeEEECCC
Confidence 1123477899999
Q ss_pred CceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee---C
Q 001176 781 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---G 857 (1132)
Q Consensus 781 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s---d 857 (1132)
|++.+..+.-...-.+.+. ..+-|. ++.. +.. . .-..+.+.|+|||..+|+-. +
T Consensus 145 g~f~ai~sRrDCkdyv~i~--------------~c~~W~-----ll~~-f~~--d-T~DltgieWsPdg~~laVwd~~Le 201 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQIS--------------SCKAWI-----LLKE-FKL--D-TIDLTGIEWSPDGNWLAVWDNVLE 201 (447)
T ss_pred CceeeeeecccHHHHHHHH--------------hhHHHH-----HHHh-cCC--C-cccccCceECCCCcEEEEecchhh
Confidence 9987766543111111000 001111 1111 111 1 45567899999999998764 3
Q ss_pred CeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCC--------------
Q 001176 858 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-------------- 923 (1132)
Q Consensus 858 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-------------- 923 (1132)
-+|..|.. .-.+..++|+| .+++|++|+.|+.+||.+--+.+....+- |-..
T Consensus 202 ykv~aYe~------------~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~ 267 (447)
T KOG4497|consen 202 YKVYAYER------------GLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETF 267 (447)
T ss_pred heeeeeee------------ccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhc
Confidence 44444432 23577899999 89999999999999998766655544331 2111
Q ss_pred ------eeEEEEcCCCCEEEEEcCCCcEEEEECCCcc------cccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeC
Q 001176 924 ------ITGLAFSPTLNALVSSGADAQLCMWSIDKWE------KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 991 (1132)
Q Consensus 924 ------V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 991 (1132)
..|+.|.|.. -...+|...... ......++.......|.-++..++||+|..++++-+|
T Consensus 268 ~~~ql~~~cLsf~p~~---------~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd 338 (447)
T KOG4497|consen 268 SIVQLLHHCLSFTPTD---------LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND 338 (447)
T ss_pred chhhhcccccccCCCc---------cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC
Confidence 2244444321 122333322110 0011112222223333467788999999999999554
Q ss_pred ---CeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCC
Q 001176 992 ---SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTA 1068 (1132)
Q Consensus 992 ---~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1132)
+.+-+||+....+...... ..+|.+..|.|....|+.+.....+++|.......++.- ..+-
T Consensus 339 ~~PnalW~Wdlq~l~l~avLiQ---k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP------------~~GF 403 (447)
T KOG4497|consen 339 KYPNALWLWDLQNLKLHAVLIQ---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP------------KKGF 403 (447)
T ss_pred CCCceEEEEechhhhhhhhhhh---ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC------------CCCc
Confidence 5799999944444433333 578999999999989998888888999998864443321 2335
Q ss_pred CcEEEEeCCCCCCeEEEEeCCCc
Q 001176 1069 HPLVIAPHPSEPNQIALGMSDGA 1091 (1132)
Q Consensus 1069 ~v~~~~~~p~~~~~l~s~~~Dg~ 1091 (1132)
.+..+.|.- +|..|+-.+.|.-
T Consensus 404 ~i~~l~W~~-~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 404 NIQKLQWLQ-PGEFIVLCGKDAF 425 (447)
T ss_pred eeeeEEecC-CCcEEEEEcCCce
Confidence 677899988 7788888888863
No 177
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=5e-17 Score=159.62 Aligned_cols=270 Identities=15% Similarity=0.234 Sum_probs=196.9
Q ss_pred ceeeecCCCCCCceeccCC---------------------cccceEEeecCCCCeeEEEEc-------cCCCeEEEEEcC
Q 001176 313 DEVSFAGVAHTPNVYSQDD---------------------LTKTVVRTLNQGSNVMSMDFH-------PQQQTILLVGTN 364 (1132)
Q Consensus 313 ~~~~~~~~g~~~~~~~~d~---------------------~~~~~~~~l~h~~~V~~~~~s-------pdg~~lla~g~~ 364 (1132)
..+.|+|||..+.+-+.|. .+............|...+|= |+.. ++|+.+.
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l~a~ssr 131 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-LFAVSSR 131 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-eeeeccc
Confidence 3467888888776665543 111222223356678887775 6676 7888899
Q ss_pred CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEe-cCCCceeee
Q 001176 365 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY-NPTGELRQH 443 (1132)
Q Consensus 365 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~-~~~~~~~~~ 443 (1132)
+.-|.+||.-+|+... +++.||..+ .-..-.+++|||||.+|.+| .+.+|+++|+ +.|......
T Consensus 132 ~~PIh~wdaftG~lra--Sy~~ydh~d------------e~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRA--SYRAYDHQD------------EYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred cCceeeeecccccccc--chhhhhhHH------------hhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcch
Confidence 9999999999998765 344343211 11234589999999999887 6778999999 444432222
Q ss_pred eee----ecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEec-CC
Q 001176 444 LEI----DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG 518 (1132)
Q Consensus 444 ~~l----~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg 518 (1132)
.++ .+..+-|.|++|+|-... .++.|+.-.++-|+.-..++++..+-+|.+.|+.++|.+++ +.|++|+. |-
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~-~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG--n~lfsGaRk~d 273 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSK-TLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG--NKLFSGARKDD 273 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCc-ceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc--CeecccccCCC
Confidence 111 234778999999997765 78999999999999988999999999999999999998865 67777765 78
Q ss_pred eEEEEEcCCCCceE-EecCCCC---eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEE
Q 001176 519 KIKAWLYDYLGSRV-DYDAPGN---WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQF 593 (1132)
Q Consensus 519 ~i~~wd~~~~~~~~-~~~~~~~---~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~ 593 (1132)
.|..||++..+... .+..|.. .-.-....|++++|++++. +|.|++||+++ |..+..+..+.. .++.+++
T Consensus 274 kIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t----dG~V~vwdlk~~gn~~sv~~~~sd-~vNgvsl 348 (406)
T KOG2919|consen 274 KILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT----DGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSL 348 (406)
T ss_pred eEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC----CccEEEEecCCCCCcccccccccc-cccceec
Confidence 89999998765433 3333332 2223445789999999854 88899999998 777777777776 7999999
Q ss_pred eCCCCEEEEEEcC
Q 001176 594 DTTRNRFLAAGDE 606 (1132)
Q Consensus 594 ~~~~~~l~~~~~d 606 (1132)
+|--..+++++..
T Consensus 349 nP~mpilatssGq 361 (406)
T KOG2919|consen 349 NPIMPILATSSGQ 361 (406)
T ss_pred CcccceeeeccCc
Confidence 9997777776644
No 178
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.4e-15 Score=166.04 Aligned_cols=563 Identities=15% Similarity=0.152 Sum_probs=320.7
Q ss_pred cCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCC----------CcEEEEEEcCCCc
Q 001176 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN----------KQLCIVTCGDDKM 475 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~----------~~~~l~s~~~dg~ 475 (1132)
..-.++.|+|.| +||.|+. ..|.+-|..+-+.+. .+.-|...|+.+.|.|.. ..++|+++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346678899876 6777754 458888887766554 677899999999998742 3468899999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEeeccCCc--cEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCC-CCE
Q 001176 476 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI--QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-GTR 552 (1132)
Q Consensus 476 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~ 552 (1132)
|.+||...+..+..+..|..++..++|.+..+. .+|++-....++.+|+..+++.............|+.+.|- .+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999999999999999999999887654 57788888899999999999998888777777778888873 344
Q ss_pred EEEEecCCCCCCeEEEEeCC-------CCceeeeeccccC----------------Cc--------eEEEEEeCCCCEEE
Q 001176 553 LFSCGTSKEGESHLVEWNES-------EGAIKRTYSGFRK----------------RS--------LGVVQFDTTRNRFL 601 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~-------~~~~~~~~~~~~~----------------~~--------v~~~~~~~~~~~l~ 601 (1132)
+..-+. .|.+.+-+.- .|+..+.-..|.+ .+ ...++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 433332 3333333321 1222221111111 00 01256788766666
Q ss_pred EEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCC--CCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCC
Q 001176 602 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE--GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 679 (1132)
Q Consensus 602 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 679 (1132)
.......+.++|++-..++.......+ .+.-+.+-|+ ...|++.-.||.+.+|--......++.-..+-..
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~----- 319 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSM----- 319 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhcc-----
Confidence 666788899999999999988887765 4555666665 4579999999999999754321111111000000
Q ss_pred CCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcce
Q 001176 680 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 759 (1132)
Q Consensus 680 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~ 759 (1132)
+ -...+.+-..-
T Consensus 320 ----------------------------d-------------------------------l~~Q~~~vr~m--------- 331 (1062)
T KOG1912|consen 320 ----------------------------D-------------------------------LGEQVHVVRPM--------- 331 (1062)
T ss_pred ----------------------------c-------------------------------cccceEEEeec---------
Confidence 0 00000000000
Q ss_pred EEecCCcccccceEEEEEecC-CceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCC
Q 001176 760 ALRLPDSIAASKVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 838 (1132)
Q Consensus 760 ~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~ 838 (1132)
....+...+..|. ...++..-++|.+.+|.+..+....+.......-..-+|....... -.
T Consensus 332 --------~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~----------v~ 393 (1062)
T KOG1912|consen 332 --------EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKL----------VG 393 (1062)
T ss_pred --------hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceee----------hh
Confidence 1111222223333 2223344445556666554322222111100000000000000000 00
Q ss_pred CeeEEEEeeCCCEEEEeeCCe--EEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee
Q 001176 839 SAACIALSKNDSYVMSASGGK--VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 916 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~sdg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 916 (1132)
.-.-+.+|.||. -+.|. +++--+.... .+.....+. +....-| ++|.|+..|+|.++|+.++...+.
T Consensus 394 k~~l~~LS~dg~----h~sGs~~~~~~p~p~~t--~~~~~p~~n-~~~~~~p----LvAvGT~sGTV~vvdvst~~v~~~ 462 (1062)
T KOG1912|consen 394 KTSLISLSDDGS----HSSGSTCVRMRPMPELT--KVENDPGGN-TPAGTVP----LVAVGTNSGTVDVVDVSTNAVAAS 462 (1062)
T ss_pred hccccchhhcCC----CCCCceeeecccCcccc--eeecCCCCC-ccceeee----eEEeecCCceEEEEEecchhhhhh
Confidence 000111222220 00111 1110011001 111111111 1112223 889999999999999999999999
Q ss_pred eccccCCeeEEEEcCCCCEEEEE----------cCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEE
Q 001176 917 LKGHQNRITGLAFSPTLNALVSS----------GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 986 (1132)
Q Consensus 917 l~~h~~~V~~l~~spdg~~l~s~----------~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 986 (1132)
+..|.+.|.++.|..... |++. +.-+.+.+-|+.+|.....+-++.... .+|..+..|..|+||
T Consensus 463 fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de-----spI~~irvS~~~~yL 536 (1062)
T KOG1912|consen 463 FSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE-----SPIRAIRVSSSGRYL 536 (1062)
T ss_pred hcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccccccccCCCCCc-----CcceeeeecccCceE
Confidence 999999999999965443 3332 233457788898876433222222221 679999999999999
Q ss_pred EEE-eCCeEEEEeC-CCCceeecCCCCCCCCC-eEEEEEc-cCCC----------------EEEEEecCCcEEEEeCCCc
Q 001176 987 LVV-HESQISVYDS-KLECSRSWSPKDALPAP-ISSAIYS-CDGL----------------LVYAGFCDGAIGVFDAETL 1046 (1132)
Q Consensus 987 ~~~-~d~~v~vwd~-~~~~~~~~~~~~~h~~~-i~~i~~s-~dg~----------------~las~~~dg~i~vwd~~~~ 1046 (1132)
++. .+.-+.+||+ +..+++.... .-+ |+.+.|+ |.-. ..++.+.| .+++.+...
T Consensus 537 ai~Fr~~plEiwd~kt~~~lr~mS~----a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~e--s~~~~~~~~ 610 (1062)
T KOG1912|consen 537 AILFRREPLEIWDLKTLRMLRLMSL----ALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVE--SRIYHITLS 610 (1062)
T ss_pred EEEecccchHHHhhccchHHHHHhh----cCCcEEEEeecccCCCCcccccchhhhhhhhceeeecccc--chheehhhh
Confidence 995 7888999999 4444443322 344 8999998 4322 23333322 223322111
Q ss_pred ce-ecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCC
Q 001176 1047 RF-RCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1100 (1132)
Q Consensus 1047 ~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~ 1100 (1132)
.. ...... -......-......++| .+..++.|..+|.+.+||+..-
T Consensus 611 a~~~sdgsq----~~~a~esfafal~~mAw---k~d~lv~GD~~GNl~~WDlg~R 658 (1062)
T KOG1912|consen 611 ALVVSDGSQ----VNTAWESFAFALCAMAW---KDDILVVGDVEGNLVVWDLGRR 658 (1062)
T ss_pred hhhhccccc----hhhHHHHHHHHHHhhhc---cCCeeEeecccCceeEEecccc
Confidence 11 000000 00001111223345778 4579999999999999997543
No 179
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.9e-17 Score=161.55 Aligned_cols=294 Identities=11% Similarity=0.125 Sum_probs=211.4
Q ss_pred cCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
.|.+-|.++.||.+++ +|++|+.|..+++|++..--.... - .|++. .-..|...|.|++|....++|
T Consensus 54 ~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~--~---------KPI~~-~~~~H~SNIF~L~F~~~N~~~ 120 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT--P---------KPIGV-MEHPHRSNIFSLEFDLENRFL 120 (609)
T ss_pred hhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC--C---------CCcee-ccCccccceEEEEEccCCeeE
Confidence 4889999999999998 799999999999999874322111 0 01110 123467899999999999999
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-E--EEEecCCCCCe
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-K--QYTFEGHEAPV 497 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~-~--~~~~~~h~~~v 497 (1132)
.+|+.+++|...|+++.+.+.... -....+.|..+..+|... .+++.+.++.|.+||.+... . ...+.......
T Consensus 121 ~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 121 YSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred ecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 999999999999999987665221 112344899999999977 89999999999999988654 2 12223344556
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE-------ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
.++-|+|... .+|++.+..+-+-+||.+....... +......-..+.|+|+|+.+++.-. ...-.+||
T Consensus 198 ~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~~~D 272 (609)
T KOG4227|consen 198 YTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPLYFD 272 (609)
T ss_pred eeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCEEee
Confidence 7788888765 7889999999999999987654321 1111223367889999999987643 22345678
Q ss_pred CCCCce-eeeecccc-----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe-----------------------eEE
Q 001176 571 ESEGAI-KRTYSGFR-----KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN-----------------------MLT 621 (1132)
Q Consensus 571 ~~~~~~-~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~ 621 (1132)
+-+.++ +..+.... ...+.+++|..+. .+++|+.+-.|++|.+.... .+.
T Consensus 273 ~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~ 351 (609)
T KOG4227|consen 273 FISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT 351 (609)
T ss_pred eecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence 766443 23332111 1146677887664 48899999999999875311 234
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 622 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
.+.+|.. -++.+.|+|...+|++.+-...+++|.-
T Consensus 352 VLrGHRS--v~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 352 VLRGHRS--VPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred EEecccc--cccceeecCCcceEeccchhhheecccc
Confidence 4555544 6899999999999999999999999964
No 180
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.9e-17 Score=171.02 Aligned_cols=240 Identities=14% Similarity=0.170 Sum_probs=165.4
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
.+.||++.|+|++|+.||.+|++|+.|-.+.|||.-..+.+.... .||...|.++.|-|.....+++||..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--cccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 378999999999999999999999999999999998766665433 489999999999997666589999999999999
Q ss_pred ECCCC----------eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eE---------EecCCCC
Q 001176 480 DVVAG----------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RV---------DYDAPGN 539 (1132)
Q Consensus 480 d~~~~----------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~---------~~~~~~~ 539 (1132)
|+... ...+.+..|...|..++..|.+. +.+.+++.||+|+-+|++.... .. .+....-
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99842 23445667889999998877654 7899999999999999986321 11 1111122
Q ss_pred eEEEEEEcCCCC-EEEEEecCCCCCCeEEEEeCCCCceeeeeccccC---C---ceEEE-EEeCCCCEEEEEEcCCeEEE
Q 001176 540 WCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK---R---SLGVV-QFDTTRNRFLAAGDEFQIKF 611 (1132)
Q Consensus 540 ~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~---~v~~~-~~~~~~~~l~~~~~dg~i~i 611 (1132)
...++..+|... +|++|+. +...++||.+.. +..+..... . ...|+ -|+|.+- ...+|
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~Rr~--lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~g---- 267 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRRRV--LKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQG---- 267 (758)
T ss_pred eeeeeeecCCCCceEEecCC----Cchhhhhhhhhh--ccCCCCCccccCCCCcccchhheecCccc----cCccc----
Confidence 567899999765 4555553 778999996421 122211110 0 01111 1222210 00111
Q ss_pred EECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 612 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
..... ...++-++|+|+|.-|++.-....|+++|+..++.....+
T Consensus 268 ------n~~~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 268 ------NLDRY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred ------ccccc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 11100 1135678999999877777777799999998885554444
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=2.3e-16 Score=152.83 Aligned_cols=291 Identities=15% Similarity=0.260 Sum_probs=210.1
Q ss_pred ceEEeecCCCCeeEEEEc--cCCCeEEEEEcC----CCcEEEEecC--CCccccccceeeeecccccccccccccCCCCc
Q 001176 335 TVVRTLNQGSNVMSMDFH--PQQQTILLVGTN----VGDISLWEVG--SRERLAHKPFKVWDISAASMPLQNALLNDAAI 406 (1132)
Q Consensus 335 ~~~~~l~h~~~V~~~~~s--pdg~~lla~g~~----dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 406 (1132)
+.+.+....-.++++.|| |+.+..||.|+. .+.|.|-.+. +++.+... -..|.-
T Consensus 36 ~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a------------------~fd~~Y 97 (364)
T KOG0290|consen 36 KEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA------------------NFDHPY 97 (364)
T ss_pred ceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC------------------CCCCCC
Confidence 335566666789999999 566667999873 3566665553 33333221 235999
Q ss_pred CeEEEEEcCCCC-----eEEEEeCCCeEEEEEecCCC-ceeeeee-----eecccCCEEEEEEecCCCcEEEEEEcCCCc
Q 001176 407 SVNRCVWGPDGL-----MLGVAFSKHIVHLYTYNPTG-ELRQHLE-----IDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 475 (1132)
Q Consensus 407 ~V~~v~~spdg~-----~las~~~dg~i~iwd~~~~~-~~~~~~~-----l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~ 475 (1132)
+++.+.|.||.+ +||+++ -.+|+|.+...+ .+..... -..+..++++..|+.-..+ +|.+++-|-+
T Consensus 98 P~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTT 174 (364)
T KOG0290|consen 98 PVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTT 174 (364)
T ss_pred CccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCe
Confidence 999999999863 666653 359999988422 1211111 1235679999999886665 8999999999
Q ss_pred EEEEECCCCeE---EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCC--CCeEEEEEEcCC
Q 001176 476 IKVWDVVAGRK---QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAP--GNWCTMMAYSAD 549 (1132)
Q Consensus 476 v~vwd~~~~~~---~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~--~~~v~~~~~s~~ 549 (1132)
..|||+++|.. ...+-+|...|..|+|.. +..+.+++.+.||.+|+||++..+.-.. +... ..+...++|+++
T Consensus 175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq 253 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ 253 (364)
T ss_pred EEEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC
Confidence 99999998733 456778999999999986 3448999999999999999998665332 2222 347788999885
Q ss_pred C-CEEEEEecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCee------E
Q 001176 550 G-TRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNM------L 620 (1132)
Q Consensus 550 ~-~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~------~ 620 (1132)
. +++++... ....|.+.|++. ..++..+.+|.. .|+.++|.|.. ..++++|.|..+.+||+...-. +
T Consensus 254 DpnymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 254 DPNYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred CchHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence 5 56665554 245699999986 567888999988 89999999975 6888999999999999976322 1
Q ss_pred EEEeCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEE
Q 001176 621 TTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 655 (1132)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 655 (1132)
.... ....|+.+.|++ .+..++.+... .+.+
T Consensus 330 lay~---a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 330 LAYT---AGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred hhhh---ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 1222 234799999997 67788777543 4443
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=6.1e-16 Score=145.89 Aligned_cols=278 Identities=18% Similarity=0.249 Sum_probs=193.2
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCC---ccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
.|.+-++||.++ +|++|+.+|+|.+..+.+- +....... ++. ...+|.++|+.++|. ..+|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~----------~iv--~eqahdgpiy~~~f~--d~~Ll 76 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKL----------KIV--PEQAHDGPIYYLAFH--DDFLL 76 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCCCCc----------cee--eccccCCCeeeeeee--hhhee
Confidence 577788999998 6999999999999998642 11111011 111 146899999999997 45777
Q ss_pred EEeCCCeEEEEEecCCCcee---eee--eeeccc-----CCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 422 VAFSKHIVHLYTYNPTGELR---QHL--EIDAHV-----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~---~~~--~l~~h~-----~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
+|+ ||.|+-|..+...... ... ...-|. -.|+++...|... -+++++.|+.++-||+++|+..++++
T Consensus 77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEc
Confidence 775 5999999887543210 000 111222 2688999998877 46666679999999999999999999
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC----------CCeEEEEEEcCCCCEEEEEecCCC
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP----------GNWCTMMAYSADGTRLFSCGTSKE 561 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1132)
||.+-|.++.-.... ..+++|+.||++|+||.++.+....+... +.+|.+++. +..++++++
T Consensus 154 GHtDYvH~vv~R~~~--~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg---- 225 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNAN--GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG---- 225 (325)
T ss_pred CCcceeeeeeecccC--cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC----
Confidence 999999999863332 57999999999999999999887755432 225555554 556888875
Q ss_pred CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCC
Q 001176 562 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 641 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1132)
...+.+|++++.++...|.-.. .+..+.|.. +.++++|+.+.|.-|.+. |.....++.... ...+..|+...
T Consensus 226 -Gp~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p 297 (325)
T KOG0649|consen 226 -GPKLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSP 297 (325)
T ss_pred -CCceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCc
Confidence 4459999999988888776433 466677764 568888888899999875 344333333222 34555554433
Q ss_pred -CEEEEEeCCCcEEEE
Q 001176 642 -SLLAVTTSDNGIKIL 656 (1132)
Q Consensus 642 -~~l~~~~~dg~i~iw 656 (1132)
+++-.++..+.+.++
T Consensus 298 ~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 298 IKFISIAGFSNKLHIL 313 (325)
T ss_pred eEEEEecccceeeeee
Confidence 344455556666554
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.1e-17 Score=176.86 Aligned_cols=251 Identities=14% Similarity=0.166 Sum_probs=190.2
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEec-----CCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-----PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 475 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~-----~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~ 475 (1132)
+..|...|..++|.|....|++|+.||+|.+|++. +...+.+..++.+|.++|.|++..+++. .+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence 56799999999999999999999999999999993 2344677889999999999999999999 8999999999
Q ss_pred EEEEECCCC----------eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCeEEE
Q 001176 476 IKVWDVVAG----------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTM 543 (1132)
Q Consensus 476 v~vwd~~~~----------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~ 543 (1132)
|+.|++... .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+.. ..+...+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 999965421 2335678999999999998877 6799999999999998876554 22222 2223334
Q ss_pred EEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 001176 544 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 544 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1132)
+.+......+..++. ..+.-.+++...+..+..+..... ..+..+.++|.+...+++.+|+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred EeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 444332211111111 122223344444444444432211 24667888999999999999999999999999
Q ss_pred eeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 618 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 618 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
..+.....|.. .++++++.|+|.+|++++.||.+++|.+...
T Consensus 522 ~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 522 KILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccchheeeccc--eecceeecCCCceEEeecCCceeehhhccch
Confidence 99998887744 8999999999999999999999999998655
No 184
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.5e-16 Score=144.62 Aligned_cols=288 Identities=13% Similarity=0.129 Sum_probs=194.5
Q ss_pred ceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCC
Q 001176 771 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 850 (1132)
Q Consensus 771 ~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~ 850 (1132)
.|.+-+++|.+++++++..+|.|.++.+....... . ...|+........ | +++++.++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s---a----------~~~gk~~iv~eqa--h-dgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS---A----------EPPGKLKIVPEQA--H-DGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc---c----------CCCCCcceeeccc--c-CCCeeeeeee--hh
Confidence 45566789999999999999999999876421100 0 1122222222333 7 9999999997 56
Q ss_pred EEEEeeCCeEEEEECCCCeE------EEEe-------eCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeee
Q 001176 851 YVMSASGGKVSLFNMMTFKV------MTMF-------MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 917 (1132)
Q Consensus 851 ~la~~sdg~i~vwd~~~~~~------~~~~-------~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 917 (1132)
+|++++||.|+-|....... +... ...-.+|+++-..|..+. +++++.|+.++-||+++|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEE
Confidence 88899999999988653211 1111 112356899999994444 445669999999999999999999
Q ss_pred ccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEE
Q 001176 918 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVY 997 (1132)
Q Consensus 918 ~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vw 997 (1132)
+||.+.|-++.--.....++||+.||++++||.++++...............|...-.-.+..-+..+++++....+.+|
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslw 232 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLW 232 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEE
Confidence 99999999998855556799999999999999999886543222111111111112222466677889999999999999
Q ss_pred eC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeC
Q 001176 998 DS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1076 (1132)
Q Consensus 998 d~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1076 (1132)
.+ ..++...+.. .+++..+.|-. ..++++++.+.|.-|.+. |.....+... .| ..+...|.
T Consensus 233 hLrsse~t~vfpi----pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~---------s~--~c~s~s~~ 294 (325)
T KOG0649|consen 233 HLRSSESTCVFPI----PARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVE---------ST--ACYSASWQ 294 (325)
T ss_pred eccCCCceEEEec----ccceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCC---------cc--ceeeeccc
Confidence 99 5555555543 56788888854 467888888899999987 5554444322 22 22223332
Q ss_pred CCCCCeEEEEeCCCcEEEE
Q 001176 1077 PSEPNQIALGMSDGAVHVV 1095 (1132)
Q Consensus 1077 p~~~~~l~s~~~Dg~i~vW 1095 (1132)
.+--++|-.++..+++.+.
T Consensus 295 ~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 295 TSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CCceEEEEecccceeeeee
Confidence 2113456666666766654
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.8e-17 Score=175.30 Aligned_cols=267 Identities=13% Similarity=0.211 Sum_probs=191.9
Q ss_pred eec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC
Q 001176 339 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 339 ~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
++. |.+.|.+++|.|... .|++++.||++.+|+++....-....+ .+...+.+|.++|.|+++++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~-----------epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDV-----------EPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccce-----------eeeEEEecccCceEEEEecCCc
Confidence 555 999999999999988 699999999999999943211111111 1112367899999999999999
Q ss_pred CeEEEEeCCCeEEEEEecCCCc-------eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe
Q 001176 418 LMLGVAFSKHIVHLYTYNPTGE-------LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 490 (1132)
Q Consensus 418 ~~las~~~dg~i~iwd~~~~~~-------~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 490 (1132)
..+.+|+.||+|+.|++..... ......+.||.+.|+.+++++... .|++|+.||+++.|+.....+ .+|
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-ccc
Confidence 9999999999999996653211 112235789999999999999888 799999999999999776655 444
Q ss_pred cCCC--CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCeEEEEEEcCCCCEEEEEecCCC
Q 001176 491 EGHE--APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSKE 561 (1132)
Q Consensus 491 ~~h~--~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1132)
.... +--.++.+..... ...++...-+.--++++........+... ...+..+.+.|.+...+++..
T Consensus 434 ~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he--- 509 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE--- 509 (577)
T ss_pred CCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc---
Confidence 3321 2223444322211 12222222222223333333333322211 125677888999988888864
Q ss_pred CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC
Q 001176 562 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 626 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1132)
++.|+++|..+++++.....|.. .++++++.|+|.+|++++.||.+++|.+....++.....|
T Consensus 510 -d~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 -DRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred -CCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 78899999999999999999888 8999999999999999999999999999877776665544
No 186
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=3.5e-17 Score=156.28 Aligned_cols=250 Identities=16% Similarity=0.199 Sum_probs=191.4
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccC-CCCcCeEEEEE
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVW 413 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~ 413 (1132)
+...|. |.+.|+|+.|-.+++ |.+|...|.|++|++.+...+.. +. .|...|+.+.-
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~ 64 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQS 64 (323)
T ss_pred CeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceee
Confidence 444555 889999999999986 78899999999999998765432 22 36778888888
Q ss_pred cCCCCeEEEEeCCCeEEEEEecCCCceee------------------------eee------------------------
Q 001176 414 GPDGLMLGVAFSKHIVHLYTYNPTGELRQ------------------------HLE------------------------ 445 (1132)
Q Consensus 414 spdg~~las~~~dg~i~iwd~~~~~~~~~------------------------~~~------------------------ 445 (1132)
-|+ ..+.+-+.|+.+.+|++..+..+.. ...
T Consensus 65 ~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 65 IPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred cCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC
Confidence 887 5677778999999999875211100 000
Q ss_pred --eecccCCEEEEEEe-cCCCcEEEEEEcCCCcEEEEECCCCe----------EEEEecCCCCCeEEEEeeccCCccEEE
Q 001176 446 --IDAHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGR----------KQYTFEGHEAPVYSVCPHHKESIQFIF 512 (1132)
Q Consensus 446 --l~~h~~~v~~v~~s-~d~~~~~l~s~~~dg~v~vwd~~~~~----------~~~~~~~h~~~v~~i~~~~~~~~~~l~ 512 (1132)
-.+..+.+.|..+. .++++++++.|.++|.|.+||+.++. .......|.++|.++.+.+.. ..=+
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~--~rGi 221 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC--DRGI 221 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh--cCCc
Confidence 00112344454432 34566688899999999999999983 333445799999999987654 3457
Q ss_pred EEecCCeEEEEEcCCCCc----eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCce
Q 001176 513 STAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 588 (1132)
Q Consensus 513 s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 588 (1132)
+|+.+..+..|.++.... ...+......|..+..-||++.++++|. |++|++|+.++..++..++.|.. .|
T Consensus 222 sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGW----D~RiRVyswrtl~pLAVLkyHsa-gv 296 (323)
T KOG0322|consen 222 SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGW----DHRIRVYSWRTLNPLAVLKYHSA-GV 296 (323)
T ss_pred CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeeccc----CCcEEEEEeccCCchhhhhhhhc-ce
Confidence 788888899998865422 2244445567888999999999999997 88899999999999999999986 89
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEEC
Q 001176 589 GVVQFDTTRNRFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1132)
.+++|+|+.+.+++++.|+.|.+|++
T Consensus 297 n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 297 NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999986
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=6.4e-17 Score=160.56 Aligned_cols=291 Identities=12% Similarity=0.136 Sum_probs=204.9
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe--cCCC-CeEE
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPG-NWCT 542 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~-~~v~ 542 (1132)
.++++-..|+|++||..+++.+..|+++...++.+.|........+.+++.||+|++||++.......+ ..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 678888899999999999999999999999999999987545588999999999999999987765543 3333 3667
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce-eeeec-cccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCe-
Q 001176 543 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYS-GFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN- 618 (1132)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~- 618 (1132)
+++....++.++++..-...+..+.+||++..+. ++.+. .|.+ .|+++.|+|.. +.|++|+.||.|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7777777888887765445577899999998766 66654 4555 89999999976 788999999999999997643
Q ss_pred ---eEEEEeCCCCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccC
Q 001176 619 ---MLTTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 694 (1132)
Q Consensus 619 ---~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 694 (1132)
++.++. ....|.++.|..++ +.|.+-+..++..+|+++.+.. ...+........
T Consensus 201 eDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~-~~~~~~~~~~~~------------------ 258 (376)
T KOG1188|consen 201 EDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE-ETWLENPDVSAD------------------ 258 (376)
T ss_pred hhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh-hhcccCccchhh------------------
Confidence 222232 12368899999877 4588888999999999998842 222211100000
Q ss_pred CCccccccccCCCCCCCCCCCCcccCccCcCCcc-cccccccccccc-cCceeeeecCCCCCCCcceEEecCCcccccce
Q 001176 695 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGS-RLVDVKPRVAED-VDKIKSWRIPDISDPSQIKALRLPDSIAASKV 772 (1132)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i 772 (1132)
..+.-. ...+-.+.. ....+-..+.+. -++..++.+..............+..+|..-|
T Consensus 259 --------d~r~~~-----------~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiV 319 (376)
T KOG1188|consen 259 --------DLRKED-----------NCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIV 319 (376)
T ss_pred --------hHHhhh-----------hhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHH
Confidence 000000 000011111 111122344444 37777777765444444444455556688889
Q ss_pred EEEEEecCCceEEeecccceeEEEee
Q 001176 773 VRLIYTNSGLSLLALASNAVHKLWKW 798 (1132)
Q Consensus 773 ~~~~~s~~g~~l~~~~~dg~i~vw~~ 798 (1132)
+++.|...+..+.+|+.||.+.+|..
T Consensus 320 R~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 320 RDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHHhhhcccceeeccCCCceEEEEec
Confidence 99999999999999999999999974
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.2e-16 Score=158.73 Aligned_cols=275 Identities=12% Similarity=0.152 Sum_probs=195.3
Q ss_pred EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC--CCCeEEEEeCCCeEEEEEec
Q 001176 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAFSKHIVHLYTYN 435 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~las~~~dg~i~iwd~~ 435 (1132)
.+|++-..|.|++||..+++.+.. ++++...++.+.|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 678888899999999999887764 678888999999987 46689999999999999999
Q ss_pred CCCceeeeeeeeccc-CCEEEEEEecCCCcEEEEEEc----CCCcEEEEECCCCeE-EEEe-cCCCCCeEEEEeeccCCc
Q 001176 436 PTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG----DDKMIKVWDVVAGRK-QYTF-EGHEAPVYSVCPHHKESI 508 (1132)
Q Consensus 436 ~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~----~dg~v~vwd~~~~~~-~~~~-~~h~~~v~~i~~~~~~~~ 508 (1132)
........ ...+|. .+..|++..-.+. .+++|. .|-.|.+||++..+. +..+ ..|.+.|++++|+|+..
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p- 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP- 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence 87665433 344555 4666666655555 666664 466899999998776 5544 46999999999999866
Q ss_pred cEEEEEecCCeEEEEEcCCCCc---eEEecCCCCeEEEEEEcCCC-CEEEEEecCCCCCCeEEEEeCCCCceeeeecccc
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 584 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1132)
++|++||.||.|.+||+..... +.....+...|.++.|..++ +.+.+-+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 8999999999999999976533 22334466789999998887 34555543 5669999999887655543321
Q ss_pred CC---------ceEEEE-EeC-CCCEEEEEEc-CCeEEEEECC---CC---eeEEEEeCCCCCCCcceEEEcCCCCEEEE
Q 001176 585 KR---------SLGVVQ-FDT-TRNRFLAAGD-EFQIKFWDMD---NM---NMLTTVDADGGLPASPRLRFNKEGSLLAV 646 (1132)
Q Consensus 585 ~~---------~v~~~~-~~~-~~~~l~~~~~-dg~i~iwd~~---~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1132)
-. .-+-+. .+| +...++.++. -++..++-+. ++ +.+..+.+ ++...|.++.|...+.++++
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 00 000111 223 3345555443 5555555443 22 23333333 23446888999989999999
Q ss_pred EeCCCcEEEEEcCC
Q 001176 647 TTSDNGIKILANSD 660 (1132)
Q Consensus 647 ~~~dg~i~iw~~~~ 660 (1132)
|+.||.+.+|....
T Consensus 334 GGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 334 GGEDGLLQAWKVED 347 (376)
T ss_pred cCCCceEEEEecCC
Confidence 99999999998643
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=8.7e-18 Score=184.29 Aligned_cols=277 Identities=16% Similarity=0.273 Sum_probs=214.3
Q ss_pred cCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
.|...|+|+.|...|+ ++++|+.|..|+||...++.++.. +.||++.|+.++.+.+..++
T Consensus 188 gH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n~~i 247 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNNTMI 247 (1113)
T ss_pred hhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhhhhh
Confidence 3889999999999998 699999999999999999988875 78999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE---ecC-CCCC
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FEG-HEAP 496 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~---~~~-h~~~ 496 (1132)
|+++.|..|++|.+.++..+. .+.+|++.|++++|+|- .+.+.||++++||.+=.-.+.. ++. ...-
T Consensus 248 aaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~ 318 (1113)
T KOG0644|consen 248 AAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDL 318 (1113)
T ss_pred hhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcccccc
Confidence 999999999999999988665 68899999999999984 3678899999999871111111 111 1234
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCC-EEEEEecCCCCCCeEEEEeCCCCc
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
+.++.|. .++..++|++.|+.-..|.+..... +...+.-+..+.+-. +.+++- .+..+.+|++.+|.
T Consensus 319 ~~s~~~~--~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl~~g~ 386 (1113)
T KOG0644|consen 319 VDSILFE--NNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNLYTGQ 386 (1113)
T ss_pred eeeeecc--ccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeeecccch
Confidence 5555553 3457789999999988886543211 111122222222322 222322 36678999999999
Q ss_pred eeeeeccccCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001176 576 IKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 654 (1132)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1132)
+.+.+.+|.. .+..+.++|-...+ .+++.||...|||+-.|.++...... ...+....|++||..++...+-|.+.
T Consensus 387 l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgql~ 463 (1113)
T KOG0644|consen 387 LLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQLY 463 (1113)
T ss_pred hhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCceE
Confidence 9999999988 88999999977655 45889999999999998888776633 23678889999999999988889999
Q ss_pred EEEcCCc
Q 001176 655 ILANSDG 661 (1132)
Q Consensus 655 iw~~~~~ 661 (1132)
|.....+
T Consensus 464 i~g~gqs 470 (1113)
T KOG0644|consen 464 ILGTGQS 470 (1113)
T ss_pred EeccCCC
Confidence 9876554
No 190
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.1e-17 Score=169.94 Aligned_cols=299 Identities=17% Similarity=0.253 Sum_probs=233.9
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
....|. |.+-|..|.|...|. +|++|+.|..|.+||+..+..... ...||...|..-.|-
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFi 194 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFI 194 (559)
T ss_pred hhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhcc
Confidence 344566 999999999999998 799999999999999998876543 256899999999998
Q ss_pred C--CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe--
Q 001176 415 P--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-- 490 (1132)
Q Consensus 415 p--dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-- 490 (1132)
| +.+.+++++.||.+++=.+...+.+.....+..|.++|.-++.-|+... -|.|++.|+.+.-.|++.+.+...+
T Consensus 195 P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~c 273 (559)
T KOG1334|consen 195 PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVC 273 (559)
T ss_pred CCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeee
Confidence 8 4568999999999999888766666555567789999999999999887 7999999999999999887654333
Q ss_pred -cCCCC---CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce------EEec------CCCCeEEEEEEcCCCCEEE
Q 001176 491 -EGHEA---PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR------VDYD------APGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 491 -~~h~~---~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~------~~~~------~~~~~v~~~~~s~~~~~l~ 554 (1132)
+.+.. ...+++.+|... ..+++++.|..+++||.+.-... ..+. ...-.|++++|+.++.-|+
T Consensus 274 r~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL 352 (559)
T KOG1334|consen 274 READEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL 352 (559)
T ss_pred eccCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee
Confidence 22333 567888887653 68999999999999998754332 1111 1233799999997665555
Q ss_pred EEecCCCCCCeEEEEeCCC--C----------ceee-eeccccCC-ceEEEE-EeCCCCEEEEEEcCCeEEEEECCCCee
Q 001176 555 SCGTSKEGESHLVEWNESE--G----------AIKR-TYSGFRKR-SLGVVQ-FDTTRNRFLAAGDEFQIKFWDMDNMNM 619 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~--~----------~~~~-~~~~~~~~-~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1132)
+... +-.|+++.-.. | ..+. .++||... .|..+- |.|...++++|+.-|.|.||+-.+++.
T Consensus 353 aSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 353 ASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred eeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence 5443 55588885432 2 2223 37888653 355554 578889999999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+..+.+..+ -|+|+.-+|.-..||+++-|..|+||...+.
T Consensus 429 i~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 429 IRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 999988766 7999999999999999999999999987444
No 191
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=9.5e-17 Score=153.39 Aligned_cols=305 Identities=13% Similarity=0.166 Sum_probs=193.1
Q ss_pred eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 578 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
..+..|.. .++++.|..++ +|++|..-|.|.+|++.+.+....+..++. ..|+.+..-|+ ..+.+-+.|+.+.+|+
T Consensus 8 fvLRp~~~-~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 8 FVLRPHSS-SVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred eEeccccc-hheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEEEEE
Confidence 44456665 78999998766 589999999999999999998888875443 37888888887 4678889999999999
Q ss_pred cCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccc
Q 001176 658 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 737 (1132)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1132)
+.-+ .. ...|+. ..+.+.++...+ .+.+... ...+.
T Consensus 84 ia~s-~~---i~i~Si-----~~nslgFCrfSl---------------~~~~k~~--------------------eqll~ 119 (323)
T KOG0322|consen 84 IAYS-AF---ISIHSI-----VVNSLGFCRFSL---------------VKKPKNS--------------------EQLLE 119 (323)
T ss_pred ccCc-ce---EEEeee-----ecccccccccee---------------ccCCCcc--------------------hhhee
Confidence 8764 11 111111 111111111111 1111000 00000
Q ss_pred ccccC--ceeeeecCCCCCCCcceEEecCCcccccceEEEEEec-CCc--eEEeecccceeEEEeeccccCCCCCccccc
Q 001176 738 AEDVD--KIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN-SGL--SLLALASNAVHKLWKWQRTERNPSGKATAN 812 (1132)
Q Consensus 738 ~~~~~--~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 812 (1132)
....+ .+.+-|.. ...+.....-+..+..+.+.+..+.. ++. .+++|..+|.+.+||+..+....
T Consensus 120 yp~rgsde~h~~D~g---~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~------- 189 (323)
T KOG0322|consen 120 YPSRGSDETHKQDGG---DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII------- 189 (323)
T ss_pred cCCcccchhhhhccC---ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee-------
Confidence 00000 00000100 01111111111133445566655332 232 35677889999999987642211
Q ss_pred cccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCC--CeE--EEEeeCCCCCeEEEEEe
Q 001176 813 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT--FKV--MTMFMSPPPAATFLAFH 887 (1132)
Q Consensus 813 ~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~s 887 (1132)
+......+..... .| ..+|.++.|.+.-..=++|+ +..+..|++.. +.+ -.+.......|..+.+-
T Consensus 190 ------~~~~~~kv~~~~a--sh-~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIR 260 (323)
T KOG0322|consen 190 ------QLPQSSKVESPNA--SH-KQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIR 260 (323)
T ss_pred ------ccccccccccchh--hc-cCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEc
Confidence 1111111111122 26 88999999987666666666 77888888763 322 22223334568889999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEEC
Q 001176 888 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 950 (1132)
Q Consensus 888 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~ 950 (1132)
| |++++|++++||.||||..++...+..++-|.+.|.+++|+||...+|.++.|+.|.+|++
T Consensus 261 p-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 261 P-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred c-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9 9999999999999999999999999999999999999999999999999999999999986
No 192
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=1.5e-16 Score=153.74 Aligned_cols=216 Identities=19% Similarity=0.342 Sum_probs=164.4
Q ss_pred ccceEEeec--CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEE
Q 001176 333 TKTVVRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 410 (1132)
Q Consensus 333 ~~~~~~~l~--h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 410 (1132)
+.+++..|. +-+.|.|+.|.|++..+++. .|+.|.+|++..+..+.. .+. ...-.+|....++
T Consensus 111 tlE~v~~Ldteavg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~va-ev~------------ss~s~e~~~~fts 175 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVA-EVL------------SSESAEMRHSFTS 175 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchhe-eec------------ccccccccceecc
Confidence 355666676 56799999999999874444 389999999998876421 110 0011236677888
Q ss_pred EEEcC--CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC-CeEE
Q 001176 411 CVWGP--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQ 487 (1132)
Q Consensus 411 v~~sp--dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~-~~~~ 487 (1132)
-+||| ||..+++. .|+++..||+++..+...+ -.+|...|.++.|+|+-+. +|+||+.||.|+|||.+. ..++
T Consensus 176 g~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv 251 (370)
T KOG1007|consen 176 GAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPV 251 (370)
T ss_pred cccCCCCccceEEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccc
Confidence 89999 88888887 6889999999987765432 3478889999999999876 899999999999999985 4578
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC-----------------------------CceEEecCCC
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----------------------------GSRVDYDAPG 538 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~-----------------------------~~~~~~~~~~ 538 (1132)
.++.+|...|+++.|+|..+ +++++++.|..|.+|...+- +.+..+..|.
T Consensus 252 ~el~~HsHWvW~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred cccCCCceEEEEEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence 89999999999999999876 89999999999999954321 1222456677
Q ss_pred CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeC
Q 001176 539 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 539 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
..|++++||.-..++++.-. -||++.|=.+
T Consensus 331 DSVY~~aWSsadPWiFASLS---YDGRviIs~V 360 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLS---YDGRVIISSV 360 (370)
T ss_pred cceEEEeeccCCCeeEEEec---cCceEEeecC
Confidence 89999999987777654331 2666766544
No 193
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=6.4e-17 Score=165.88 Aligned_cols=199 Identities=22% Similarity=0.220 Sum_probs=157.1
Q ss_pred EEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceee
Q 001176 882 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 961 (1132)
Q Consensus 882 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~ 961 (1132)
.+++|+. +|..|++|+.||++|||+.++...+.....|.+.|.+|.|||||++|++.+.| ..++|+..++.....
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~--- 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR--- 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh---
Confidence 7899999 89999999999999999998888888888899999999999999999999999 899999999853322
Q ss_pred eCCCCCCCCCCCceeEEECCCC---cE-EEE--EeCCeEEEEeC---CCCceeecCCCCCCCCCeEEEEEccCCCEEEEE
Q 001176 962 QAPAGRQSPLVGETKVQFHNDQ---TH-LLV--VHESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1032 (1132)
Q Consensus 962 ~~~~~~~~~~~~v~~~~~s~dg---~~-l~~--~~d~~v~vwd~---~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~ 1032 (1132)
.... ........+.|+.|+ .+ +++ ...+.|+.||+ .+.....+...-.....|++++.|+||+++|.|
T Consensus 223 --~t~~-~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 223 --KTPF-SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred --cCCc-ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 1111 111445678888887 33 333 24567888877 221111111111225689999999999999999
Q ss_pred ecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1033 FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1033 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
+.||.|.|++..+.+.+.-+. +.|...|+.+.|+| |.+++++-+.|.+..|-.+.-
T Consensus 300 T~dGsVai~~~~~lq~~~~vk----------~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVK----------EAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEeceeeeeEeeh----------hhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 999999999999988765442 58999999999999 889999999999999988866
No 194
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=8.8e-16 Score=148.59 Aligned_cols=268 Identities=15% Similarity=0.211 Sum_probs=195.7
Q ss_pred CCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCeEEEEeCC-------CeEEEEEec
Q 001176 364 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGVAFSK-------HIVHLYTYN 435 (1132)
Q Consensus 364 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~las~~~d-------g~i~iwd~~ 435 (1132)
.|+.|.+-++..+.. .+....+..|.+.|..++-+| |.+.|+++..+ ..+.||.+.
T Consensus 38 ~dNqVhll~~d~e~s----------------~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ip 101 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGS----------------ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIP 101 (370)
T ss_pred CcceeEEEEecCccc----------------hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecc
Confidence 356777766654432 222334667899999999999 66677777542 247899987
Q ss_pred CCCc------eeeeeeee-cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE-EEEec-----CCCCCeEEEEe
Q 001176 436 PTGE------LRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFE-----GHEAPVYSVCP 502 (1132)
Q Consensus 436 ~~~~------~~~~~~l~-~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~-----~h~~~v~~i~~ 502 (1132)
.... +.+...+. .+-+.|.|+.|.|++. .+++-. |..|.+|++..+.. +..+. +|....++-+|
T Consensus 102 e~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~--klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 102 EPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD--KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAW 178 (370)
T ss_pred cccCccccchhhHhhcCCHHHhCceeeEEEcCCCC--eeEEec-cCceEEEEcccCcchheeecccccccccceeccccc
Confidence 5422 12222333 4566899999999998 566665 88999999998766 33332 35667888899
Q ss_pred eccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCeEEEEEEcCCCCEEE-EEecCCCCCCeEEEEeCCC-Cceeee
Q 001176 503 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLF-SCGTSKEGESHLVEWNESE-GAIKRT 579 (1132)
Q Consensus 503 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~-~~~~~~~~~~~i~~wd~~~-~~~~~~ 579 (1132)
+|..+|+.+++. .|+++..||+++..+...+ ..|+..|..+.|+|+-++++ +|+ .|+.|++||.+. ..++..
T Consensus 179 spHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g----DdgyvriWD~R~tk~pv~e 253 (370)
T KOG1007|consen 179 SPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG----DDGYVRIWDTRKTKFPVQE 253 (370)
T ss_pred CCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC----CCccEEEEeccCCCccccc
Confidence 998888777665 5899999999988776654 56788999999999987654 554 388899999985 457888
Q ss_pred eccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCe-----------------------------eEEEEeCCCCC
Q 001176 580 YSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-----------------------------MLTTVDADGGL 629 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~ 629 (1132)
+.+|.. .+.++.|+|.. +.+++||.|..|.+|...+-. .+.++.. +.
T Consensus 254 l~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hE 330 (370)
T KOG1007|consen 254 LPGHSH-WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HE 330 (370)
T ss_pred cCCCce-EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc--cc
Confidence 888877 99999999976 556778999999999764321 1122333 34
Q ss_pred CCcceEEEcC-CCCEEEEEeCCCcEEEEEc
Q 001176 630 PASPRLRFNK-EGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 630 ~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~ 658 (1132)
..|++++|+. |.=.+|+-+-||.+.|=.+
T Consensus 331 DSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 5899999998 6667788889999987554
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=2.4e-15 Score=169.12 Aligned_cols=250 Identities=15% Similarity=0.136 Sum_probs=186.1
Q ss_pred CCcCeEEEEEcC-CCCeEEEEeCCCeEEEEEecCCCc--eeee-eeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 404 AAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE--LRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 404 h~~~V~~v~~sp-dg~~las~~~dg~i~iwd~~~~~~--~~~~-~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
-...|.|+.|+| +..++|.|..+|.|.+||+..+.. .... .....|..+++.+.|..+-.+.-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 567899999999 677888999999999999998765 2111 123468899999999876543358999999999999
Q ss_pred ECCCCeE------EEEec------CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc--------eEEecCCCC
Q 001176 480 DVVAGRK------QYTFE------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--------RVDYDAPGN 539 (1132)
Q Consensus 480 d~~~~~~------~~~~~------~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--------~~~~~~~~~ 539 (1132)
+++.-.. ..... .-...++++.|.+... ..++.|+.+|.|..-+...... ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 1234678888887654 7899999999998733322211 225667888
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC-CCceeeeeccccCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 617 (1132)
.|+++.++|-+..++..+ +|.++++|... ...++..+..+.+ .+++++|||... .|+++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~----gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSV----GDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeee----ccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 999999999886655443 28889999987 6677777776665 699999999874 5566778999999999754
Q ss_pred e--eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 618 N--MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 618 ~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
. ++.+.... ....+.+.|+++|+.|++|...|++.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 3 34443333 336678888999999999999999999998654
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=1.8e-15 Score=170.07 Aligned_cols=271 Identities=16% Similarity=0.209 Sum_probs=199.1
Q ss_pred ceeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCC
Q 001176 325 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 404 (1132)
Q Consensus 325 ~~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 404 (1132)
.+|..... ..+-..+.-...|+|++|+|....++|.|..+|.|.+||+..+..... .........|
T Consensus 225 ~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~sh 290 (555)
T KOG1587|consen 225 LVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVSH 290 (555)
T ss_pred EEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------cccccccccC
Confidence 34444443 677777888899999999998888999999999999999998765211 0011124569
Q ss_pred CcCeEEEEEcCCC--CeEEEEeCCCeEEEEEecCCCceeeeeeee---------cccCCEEEEEEecCCCcEEEEEEcCC
Q 001176 405 AISVNRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHPNKQLCIVTCGDD 473 (1132)
Q Consensus 405 ~~~V~~v~~spdg--~~las~~~dg~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~v~~s~d~~~~~l~s~~~d 473 (1132)
..+|+.+.|-.+- .-+++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+.+
T Consensus 291 ~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~ 369 (555)
T KOG1587|consen 291 SEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEE 369 (555)
T ss_pred CcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCC
Confidence 9999999998754 459999999999999887533211111111 11236899999987776 78999999
Q ss_pred CcEEEEECC---CCe-----EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCCCeEEEE
Q 001176 474 KMIKVWDVV---AGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTMM 544 (1132)
Q Consensus 474 g~v~vwd~~---~~~-----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~ 544 (1132)
|.|.--+-. .+. .+..+..|.++|.++.++|-.. ..+++++ |-++++|.-. ...+...+..+...++++
T Consensus 370 G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~v 447 (555)
T KOG1587|consen 370 GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDV 447 (555)
T ss_pred cEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeee
Confidence 998873322 222 2235566899999999988764 3444444 9999999887 556666777777789999
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEeCCCC--ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 001176 545 AYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1132)
+|||....++.+. +.+|.|.+||+... .++.+.... ....+.+.|++.|+.+++|...|.+++|++..
T Consensus 448 aWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 448 AWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999887776665 46899999998743 344444443 32677788999999999999999999999864
No 197
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=1.9e-14 Score=160.10 Aligned_cols=272 Identities=14% Similarity=0.179 Sum_probs=178.8
Q ss_pred EEEEEcCCCcEEEEecCCC-ccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe-CCCeEEEEEec
Q 001176 358 ILLVGTNVGDISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYN 435 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~-~dg~i~iwd~~ 435 (1132)
+.++...++.|.+|++.+. +...... + .+.+....++++||+++|++++ .++.|.+|+++
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence 4555577999999999743 2211111 1 1345677899999999987764 47889999997
Q ss_pred CCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc-CCCcEEEEECCC-Ce---EEEEecCCCCCeEEEEeeccCCccE
Q 001176 436 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVA-GR---KQYTFEGHEAPVYSVCPHHKESIQF 510 (1132)
Q Consensus 436 ~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~dg~v~vwd~~~-~~---~~~~~~~h~~~v~~i~~~~~~~~~~ 510 (1132)
....+....... ..+....++|+|+++ ++++++ .++.|.+|++.+ +. .+..+.+ ......++++|++ ++
T Consensus 66 ~~g~l~~~~~~~-~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g--~~ 139 (330)
T PRK11028 66 DDGALTFAAESP-LPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDN--RT 139 (330)
T ss_pred CCCceEEeeeec-CCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCC--CE
Confidence 433232222221 233567899999999 455544 588999999864 32 2333332 2345667787754 56
Q ss_pred E-EEEecCCeEEEEEcCCCCceEE-----e-cCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC--Cc--eeee
Q 001176 511 I-FSTAIDGKIKAWLYDYLGSRVD-----Y-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--GA--IKRT 579 (1132)
Q Consensus 511 l-~s~s~dg~i~~wd~~~~~~~~~-----~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~--~~~~ 579 (1132)
+ ++...++.|.+||+++.+.... . ...+.....++|+|+|++++++.. .++.|.+|++.. ++ .+..
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEEE
Confidence 6 5556679999999986433211 1 112345678999999999988763 478899999873 33 2333
Q ss_pred eccccC-----CceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCe----eEEEEeCCCCCCCcceEEEcCCCCEEEEEeC
Q 001176 580 YSGFRK-----RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 580 ~~~~~~-----~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
+..... .....+.++|++++++++. .++.|.+|++.... .+...... .....+.++|+|++|+++..
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEEc
Confidence 322111 1233588999999999975 47899999986432 22222221 14568999999999998776
Q ss_pred -CCcEEEEEcC
Q 001176 650 -DNGIKILANS 659 (1132)
Q Consensus 650 -dg~i~iw~~~ 659 (1132)
+++|.+|++.
T Consensus 294 ~~~~v~v~~~~ 304 (330)
T PRK11028 294 KSHHISVYEID 304 (330)
T ss_pred cCCcEEEEEEc
Confidence 8899999875
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.8e-15 Score=150.62 Aligned_cols=313 Identities=9% Similarity=0.056 Sum_probs=219.9
Q ss_pred cccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEE
Q 001176 766 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 845 (1132)
Q Consensus 766 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 845 (1132)
.+|.+.|..+.|+.++++|++++.|..+++|++...-. ..+.+++. +.+..| ...|.|++|
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~----------------~k~~KPI~--~~~~~H-~SNIF~L~F 113 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV----------------RKTPKPIG--VMEHPH-RSNIFSLEF 113 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHh----------------hcCCCCce--eccCcc-ccceEEEEE
Confidence 34889999999999999999999999999998753111 11222222 444456 899999999
Q ss_pred eeCCCEEEEee-CCeEEEEECCCCeEEEEeeCC--CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce-eeee--ecc
Q 001176 846 SKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTK--LKG 919 (1132)
Q Consensus 846 s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~~--l~~ 919 (1132)
...++++.+|. +++|.+.|+++.+.+..+... .+.|..+..+| ..+.+++.+.+|.|.+||....+ .+.. +..
T Consensus 114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 114 DLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred ccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 99999999998 899999999999888887632 25899999999 68899999999999999998654 2221 112
Q ss_pred ccCCeeEEEEcCCC-CEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEE
Q 001176 920 HQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVY 997 (1132)
Q Consensus 920 h~~~V~~l~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vw 997 (1132)
.......+.|+|.. .+|++.+.-+-+-+||.......... .....+-......-..+.|+|.|..+.+- ....-.+|
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~-~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~ 271 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ-RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYF 271 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHh-hhccccCcccchhhhheeeCCCCCeehhhhccCCCEEe
Confidence 33456778899876 56778888888999999764421110 01111111101233678899999988884 44455677
Q ss_pred eCCCCceeecCCCC-----CCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecc---cCCC-cccc--------c
Q 001176 998 DSKLECSRSWSPKD-----ALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCR---IGPS-AYIP--------T 1060 (1132)
Q Consensus 998 d~~~~~~~~~~~~~-----~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~---~~~~-~~~~--------~ 1060 (1132)
|+-.+....+...+ .....+.+++|-.|- .+++|+.+-.|++|.+.....-.- |... ..+| .
T Consensus 272 D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~ 350 (609)
T KOG4227|consen 272 DFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKEL 350 (609)
T ss_pred eeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheeccee
Confidence 87332222222211 124568889997664 499999999999999864333222 1110 0111 2
Q ss_pred cccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1061 YAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1061 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
.+..||...+-.+.|+| ..++|++++-...+++|.--...
T Consensus 351 ~VLrGHRSv~NQVRF~~-H~~~l~SSGVE~~~KlWS~~r~P 390 (609)
T KOG4227|consen 351 TVLRGHRSVPNQVRFSQ-HNNLLVSSGVENSFKLWSDHRLP 390 (609)
T ss_pred EEEecccccccceeecC-CcceEeccchhhheeccccccCC
Confidence 34569999999999999 77899999999999999876655
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=5.3e-14 Score=141.75 Aligned_cols=240 Identities=10% Similarity=0.103 Sum_probs=185.6
Q ss_pred CcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC--CcEEEEECC
Q 001176 405 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVV 482 (1132)
Q Consensus 405 ~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d--g~v~vwd~~ 482 (1132)
...+..+.|+.|...|..|+.|| -++|..+...... ........|.-+-|+.. ++|..+.+ +.+++.+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS----LvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS----LVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc----eeEEEecCCCceEEEEEcc
Confidence 34677788999999999999999 7888877644321 11112234555566543 44444433 459999999
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCCeEEEEEEcCCCCEEEEEecC
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
.+..+..+. ...+|.++.++. +.|+.+-.+. |.|||+++.+.+..+.. +...+.++++++.+.+++.-+.
T Consensus 77 k~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s- 149 (391)
T KOG2110|consen 77 KKTTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS- 149 (391)
T ss_pred cCceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-
Confidence 888887765 456788998843 5666665554 99999999888776544 3445777777777778887653
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCe-EEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRLRFN 638 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1132)
...|.|++||..+-+.+..+..|.+ .+.+++|+++|.+++++++.|+ ||++.+.+|+.+..+.-......|.+++|+
T Consensus 150 -~t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 150 -TTSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred -CCCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 2367799999999999999999888 9999999999999999998887 699999999999999765555678999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCc
Q 001176 639 KEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|++++|++.++.++|++|.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998654
No 200
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=4.4e-17 Score=178.85 Aligned_cols=237 Identities=17% Similarity=0.227 Sum_probs=185.9
Q ss_pred CCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccccee
Q 001176 835 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 913 (1132)
Q Consensus 835 h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 913 (1132)
| ...|+|+.|...|.++++|+ |..++||.+++..++....||.+.|+.++.+. +..++|+++.|..|++|.+.++.+
T Consensus 189 H-~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 189 H-RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred h-hhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCCCch
Confidence 7 88999999999999999999 67899999999999999999999999999998 889999999999999999999999
Q ss_pred eeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECC-CcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeC
Q 001176 914 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHE 991 (1132)
Q Consensus 914 ~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d 991 (1132)
+..+.+|.+.|++++|+|-. +.+.||++++||.. .............. ..-+..+.|-..+..+++ +.+
T Consensus 267 vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~-----~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTE-----KDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCccc-----ccceeeeeccccccccccccCC
Confidence 99999999999999999964 78899999999998 21111111111111 134566677777777777 456
Q ss_pred CeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCc
Q 001176 992 SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHP 1070 (1132)
Q Consensus 992 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg-~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 1070 (1132)
+.-..|...... .+...+.-+.++.|- .+.+++-.+..+++|++.+|.....+. +|+..+
T Consensus 338 ~ea~n~e~~~l~--------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-----------ghsd~~ 398 (1113)
T KOG0644|consen 338 GEARNHEFEQLA--------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-----------GHSDEV 398 (1113)
T ss_pred cccccchhhHhh--------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-----------ccccce
Confidence 666666651111 011112222223232 456667778899999999998775554 888999
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1071 LVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1071 ~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
..+.++|-+..+..+++.||...|||+-.|-
T Consensus 399 yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 399 YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred eeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 9999999888999999999999999998776
No 201
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=3.8e-14 Score=157.68 Aligned_cols=269 Identities=14% Similarity=0.184 Sum_probs=175.4
Q ss_pred CCCCCCceeccCC-cccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCC-Cccccccceeeeecccccccc
Q 001176 319 GVAHTPNVYSQDD-LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPL 396 (1132)
Q Consensus 319 ~~g~~~~~~~~d~-~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 396 (1132)
+.++.+.++..+. ...+.+.++.+.+....++++|+++++++++..++.|.+|++.. +.......
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~------------- 75 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE------------- 75 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee-------------
Confidence 3345555555532 22346677777778899999999996555556689999999973 32211000
Q ss_pred cccccCCCCcCeEEEEEcCCCCeEEEEeC-CCeEEEEEecCCCce-eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC
Q 001176 397 QNALLNDAAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 474 (1132)
Q Consensus 397 ~~~~~~~h~~~V~~v~~spdg~~las~~~-dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg 474 (1132)
....+....++|+|+|++|++++. ++.|.+|++++...+ .....+. +.....+++|+|+++. ++++...++
T Consensus 76 -----~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~-l~v~~~~~~ 148 (330)
T PRK11028 76 -----SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRT-LWVPCLKED 148 (330)
T ss_pred -----ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCE-EEEeeCCCC
Confidence 012234678999999999888764 889999999753322 2111222 2234677899999984 446666789
Q ss_pred cEEEEECCCCeEEE-------EecCCCCCeEEEEeeccCCccEEEEEec-CCeEEEEEcCCC--Cc--eEEecC------
Q 001176 475 MIKVWDVVAGRKQY-------TFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYL--GS--RVDYDA------ 536 (1132)
Q Consensus 475 ~v~vwd~~~~~~~~-------~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~~wd~~~~--~~--~~~~~~------ 536 (1132)
.|.+||+.+...+. ... .......++|+|+ +.+++++.. +++|.+|+++.. .. ...+..
T Consensus 149 ~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pd--g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 149 RIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPN--QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred EEEEEEECCCCcccccCCCceecC-CCCCCceEEECCC--CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 99999997633221 111 1233567888764 477777765 999999999742 21 112211
Q ss_pred CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc----eeeeeccccCCceEEEEEeCCCCEEEEEEc-CCeEEE
Q 001176 537 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EFQIKF 611 (1132)
Q Consensus 537 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 611 (1132)
.......+.++|++++++++.. +++.|.+|++.... .+...... .....+.++|+|++|+++.. ++.|.+
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~---~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDR---TASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISV 300 (330)
T ss_pred CCccceeEEECCCCCEEEEecC---CCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEE
Confidence 1123346889999999998743 46789999986433 22222221 13456899999999998774 899999
Q ss_pred EECC
Q 001176 612 WDMD 615 (1132)
Q Consensus 612 wd~~ 615 (1132)
|+++
T Consensus 301 ~~~~ 304 (330)
T PRK11028 301 YEID 304 (330)
T ss_pred EEEc
Confidence 9875
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=4e-15 Score=167.92 Aligned_cols=305 Identities=17% Similarity=0.290 Sum_probs=209.2
Q ss_pred CEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCC---CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC
Q 001176 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH---EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 528 (1132)
Q Consensus 452 ~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h---~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 528 (1132)
+-..+.|+|=.. .++++...-.|+|||.+.++.+..|..+ ...|+.+++-...|..++++++.||.||+|+--..
T Consensus 1066 ~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 456678888777 6888877779999999999998877654 35688898877778899999999999999953221
Q ss_pred CceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCe
Q 001176 529 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ 608 (1132)
Q Consensus 529 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 608 (1132)
.. ....|+++. ..-++. ..+..+.. ..+.|.....+|+++|+-..
T Consensus 1144 ~~------------------~~~eLVTaw------------~~Ls~~----~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1144 KW------------------KKPELVTAW------------SSLSDQ----LPGARGTG-LVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred cc------------------CCceeEEee------------cccccc----CccCCCCC-eeeehhhhCCeEEecCCeeE
Confidence 10 112334432 111111 11111111 33567777778888888899
Q ss_pred EEEEECCCCeeEEEEeCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCc
Q 001176 609 IKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 687 (1132)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1132)
|+|||.........+..... ..|+++.-+. .|+.+++|..||.|++||.+.....
T Consensus 1189 IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------------------- 1244 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------------------- 1244 (1387)
T ss_pred EEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc-----------------------
Confidence 99999998888888775543 3566666544 5799999999999999997654110
Q ss_pred ccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcc
Q 001176 688 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 767 (1132)
Q Consensus 688 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~ 767 (1132)
.-|..|.-
T Consensus 1245 ------------------------------------------------------s~v~~~R~------------------ 1252 (1387)
T KOG1517|consen 1245 ------------------------------------------------------SLVCVYRE------------------ 1252 (1387)
T ss_pred ------------------------------------------------------ccceeecc------------------
Confidence 01112211
Q ss_pred cccc--eEEEEEecCCce-EEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEE
Q 001176 768 AASK--VVRLIYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 844 (1132)
Q Consensus 768 ~~~~--i~~~~~s~~g~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~ 844 (1132)
|... |..+.+.++|-. |++++.+|.|++||+..... . . .... ...... .+..+++.
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e--~----------------~~~i-v~~~~y-Gs~lTal~ 1311 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-E--T----------------FLTI-VAHWEY-GSALTALT 1311 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-c--c----------------ccee-eecccc-Cccceeee
Confidence 2222 778888886654 99999999999999865210 0 0 0000 000000 23589999
Q ss_pred EeeCCCEEEEeeCCeEEEEECCCCeEEEEeeC-------CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce
Q 001176 845 LSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS-------PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 912 (1132)
Q Consensus 845 ~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~-------~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 912 (1132)
.+++...+|+|+.+.|.||++.. +.+..++. ..+.+.|++|+| -.-++|+|+.|.+|.||......
T Consensus 1312 VH~hapiiAsGs~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1312 VHEHAPIIASGSAQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eccCCCeeeecCcceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 99999999999999999999864 44343332 346689999999 78899999999999999876543
No 203
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=2.2e-14 Score=164.91 Aligned_cols=255 Identities=13% Similarity=0.089 Sum_probs=184.0
Q ss_pred cCCCCcCeEEEEEcCCC-CeEEEEeCCCeEEEEEecCC----CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc
Q 001176 401 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 475 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg-~~las~~~dg~i~iwd~~~~----~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~ 475 (1132)
+..|+..|..++.++.. .++++||.||+|++|+...- ...+...++..-..++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 66789999999988754 99999999999999998642 22333334444567899999999999 7889999999
Q ss_pred EEEEECCCC--eE-----EEEecC-CCCCeEEEE-eeccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCeEEEE
Q 001176 476 IKVWDVVAG--RK-----QYTFEG-HEAPVYSVC-PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMM 544 (1132)
Q Consensus 476 v~vwd~~~~--~~-----~~~~~~-h~~~v~~i~-~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~ 544 (1132)
|++.++... +. .+.... ..+.+.++. +........++.+..-+.|..||.++...... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998762 21 111112 234444443 33222223788889999999999988766553 44567799999
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC---CEEEEEE--cCCeEEEEECCCCee
Q 001176 545 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR---NRFLAAG--DEFQIKFWDMDNMNM 619 (1132)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~dg~i~iwd~~~~~~ 619 (1132)
+.+|.+.+++.|+. .|.+.+||++-+.++..+......++..+..+|-. ...++++ ..+.|.+|++.+|..
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999975 77899999999999888876555577777766643 4555544 578999999999877
Q ss_pred EEEEeCCCC-----------------CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 620 LTTVDADGG-----------------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 620 ~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
...+-.... ........+...+..+.+|+.|..||.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 666643211 011122333344568899999999999998776
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.4e-14 Score=163.63 Aligned_cols=261 Identities=18% Similarity=0.211 Sum_probs=179.7
Q ss_pred cceEEEEEec--CCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 770 SKVVRLIYTN--SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 770 ~~i~~~~~s~--~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
..|+.+.+-+ |...+++++.||.|+||+--.... .... -+.-|..-++..... .+.-.-+.|-.
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~--~~~e----LVTaw~~Ls~~~~~~--------r~~~~v~dWqQ 1175 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW--KKPE----LVTAWSSLSDQLPGA--------RGTGLVVDWQQ 1175 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEeccccccc--CCce----eEEeeccccccCccC--------CCCCeeeehhh
Confidence 3455565544 456788999999999996322110 0000 112233222222211 12224456666
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEEEeeC-CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc---eeeeeeccccC
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKGHQN 922 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~ 922 (1132)
...+|.+++ -..|+|||+..-.+...+.. ....|+++.-+-..|+++|.|..||.|++||.... ..+...+.|++
T Consensus 1176 ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~ 1255 (1387)
T KOG1517|consen 1176 QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND 1255 (1387)
T ss_pred hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCC
Confidence 555666655 57899999998777776654 33457777665546899999999999999998753 35677788988
Q ss_pred C--eeEEEEcCCCC-EEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC
Q 001176 923 R--ITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 999 (1132)
Q Consensus 923 ~--V~~l~~spdg~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~ 999 (1132)
. |..+.+-+.|- .|++|+.||.|++||+..........+.... ..+...+++..+++...+|+|+.+.|++|++
T Consensus 1256 ~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~---~yGs~lTal~VH~hapiiAsGs~q~ikIy~~ 1332 (1387)
T KOG1517|consen 1256 VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW---EYGSALTALTVHEHAPIIASGSAQLIKIYSL 1332 (1387)
T ss_pred cccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc---ccCccceeeeeccCCCeeeecCcceEEEEec
Confidence 8 99999988774 5999999999999999885322211111111 0013478999999999999987799999999
Q ss_pred CCCceeecCCCCC----CCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcc
Q 001176 1000 KLECSRSWSPKDA----LPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1047 (1132)
Q Consensus 1000 ~~~~~~~~~~~~~----h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~ 1047 (1132)
.++.+..+....+ ..+.+.+++|.|.--+||+|+.|.+|.||......
T Consensus 1333 ~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1333 SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 7777665543322 14568999999999999999999999999887654
No 205
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.66 E-value=7.7e-12 Score=129.69 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=106.0
Q ss_pred cceEEEEEecCCceEEeecccc-eeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeC
Q 001176 770 SKVVRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 848 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~d 848 (1132)
..|.-..+.-++..++.+..|| .+.+|+.. ++++-.. .. . -+.|.++..++|
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr~-e~---~-lg~I~av~vs~d 412 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKRI-EK---D-LGNIEAVKVSPD 412 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEEe-eC---C-ccceEEEEEcCC
Confidence 3455555666666788888887 78887653 3332221 11 2 567999999999
Q ss_pred CCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCC----cEEEEEcccceeeeeeccccCC
Q 001176 849 DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----SVQIYNVRVDEVKTKLKGHQNR 923 (1132)
Q Consensus 849 g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~ 923 (1132)
|++++++. ...+.+.|+++++....-+...+-|+.++|+| +++++|.+--+| .|++||+.+++...... ..+.
T Consensus 413 GK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~ 490 (668)
T COG4946 413 GKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAY 490 (668)
T ss_pred CcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cccc
Confidence 99999998 57899999999988766666778899999999 999999987776 68999999888665433 2233
Q ss_pred eeEEEEcCCCCEEEEEc
Q 001176 924 ITGLAFSPTLNALVSSG 940 (1132)
Q Consensus 924 V~~l~~spdg~~l~s~~ 940 (1132)
=.+-+|.||+++|.--+
T Consensus 491 DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 491 DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ccCcccCCCCcEEEEEe
Confidence 34678999999876544
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.1e-14 Score=166.82 Aligned_cols=235 Identities=11% Similarity=0.098 Sum_probs=163.8
Q ss_pred CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC---CeEEEEEecCCCcee
Q 001176 365 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELR 441 (1132)
Q Consensus 365 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d---g~i~iwd~~~~~~~~ 441 (1132)
+..|.|||........ +..|...+.+.+|||||+.||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 4689999987654221 45678889999999999999987653 479999998875322
Q ss_pred eeeeeecccCCEEEEEEecCCCcEEEEEE-cCCCcEEEE--ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEE-ecC
Q 001176 442 QHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVW--DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AID 517 (1132)
Q Consensus 442 ~~~~l~~h~~~v~~v~~s~d~~~~~l~s~-~~dg~v~vw--d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~-s~d 517 (1132)
...+.+| ...++|+|||+ .|+.+ +.+|.+.|| |+.+++ ...+..+...+....|+|++ ..|+.+ ..+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDG--QSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCC--CEEEEEECCC
Confidence 2233344 34689999999 45554 567765555 665555 45666777778889998854 655544 467
Q ss_pred CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC
Q 001176 518 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 597 (1132)
Q Consensus 518 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 597 (1132)
|...+|+++..........+.. ....|+|||++|+..+. ..+.+||+.+++........ ....+.|+|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG 383 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNG 383 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCC
Confidence 8889998765433222222332 46789999999988753 23777999988754333222 23457899999
Q ss_pred CEEEEEEcCCeEEEEEC--CCCeeEEEEeCCCCCCCcceEEEcCC
Q 001176 598 NRFLAAGDEFQIKFWDM--DNMNMLTTVDADGGLPASPRLRFNKE 640 (1132)
Q Consensus 598 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1132)
++++.++.++.+.+|.+ .+++.+..+..+.+ .+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 99999998888888875 35777777765543 6788899884
No 207
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=1.9e-14 Score=139.65 Aligned_cols=252 Identities=13% Similarity=0.239 Sum_probs=181.5
Q ss_pred eecCCCCeeEEEEccCCC----eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 339 TLNQGSNVMSMDFHPQQQ----TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 339 ~l~h~~~V~~~~~spdg~----~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
++.|.-+++.+.|.|+.. .+|||.+ ..+++|.+...+..... ...+....-..+..++++..|+
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~----------~~~L~~~kns~~~aPlTSFDWn 159 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL----------QSVLNNNKNSEFCAPLTSFDWN 159 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceeh----------hhhhccCcccccCCcccccccc
Confidence 356999999999999862 3677764 58999998743211100 0011111133477899999999
Q ss_pred C-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE---EEEe
Q 001176 415 P-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTF 490 (1132)
Q Consensus 415 p-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~---~~~~ 490 (1132)
. |-++|.+++-|.+..|||++++..-.....|-+|...|.+++|..++.+ ++++.|.||.|+++|++..+- +++-
T Consensus 160 e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~ 238 (364)
T KOG0290|consen 160 EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYED 238 (364)
T ss_pred cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecC
Confidence 8 7889999999999999999997543333467799999999999998877 899999999999999987543 2222
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecC-CeEEEEEcCCCCc-eEEecCCCCeEEEEEEcCCC-CEEEEEecCCCCCCeEE
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~ 567 (1132)
.....+...++|+... -+++++-..| ..|.+-|++.... ...+..|.+.|+.++|.|.. ..|.++|. |.++.
T Consensus 239 p~~~~pLlRLswnkqD-pnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD----D~qal 313 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNKQD-PNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD----DCQAL 313 (364)
T ss_pred CCCCCcceeeccCcCC-chHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC----cceEE
Confidence 2235677888887654 3677776655 4689999998765 55889999999999999975 56777764 88899
Q ss_pred EEeCCCCc------eeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEE
Q 001176 568 EWNESEGA------IKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKF 611 (1132)
Q Consensus 568 ~wd~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i 611 (1132)
+||+...- ++..+. ..+.|+.+.|++.. ..++.+. ++++.+
T Consensus 314 iWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 314 IWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred EEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 99997532 222233 22378999999654 5555554 444443
No 208
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.65 E-value=3.8e-12 Score=145.44 Aligned_cols=197 Identities=15% Similarity=0.192 Sum_probs=152.3
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCC---cCeEEEEEcCCCCeE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA---ISVNRCVWGPDGLML 420 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~V~~v~~spdg~~l 420 (1132)
+.|....+.-+.+ .++.++.++.+.|||...+..... +..+.. ....-+-++++.-++
T Consensus 88 ~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~------------------i~~~er~~l~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 88 DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK------------------IQSDERCTLYSSLIIGDSAEELYI 148 (967)
T ss_pred ccccccchhhhcc-eEEEEEcCceEEEEecccCceehh------------------cCCCceEEEEeEEEEeccCcEEEE
Confidence 4555566666666 477778889999999987765432 000111 112224467777799
Q ss_pred EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE-EecCCCCCeEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYS 499 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~ 499 (1132)
++|+.-+.|.+|+........ .+.+|.+.|.++.|+.||. ++++.|.|+++++|++++++... +.-+|...|+.
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred EeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 999999999999988332221 4789999999999999999 89999999999999999988776 66789999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 573 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1132)
+++.|. .+++++.|-+.++|+.+..... .+..| ...+..++..++...+++++. |+.+++||+..
T Consensus 224 ~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 224 CCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNG 289 (967)
T ss_pred EEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhc
Confidence 999874 8999999999999976644333 55555 447899999998888888875 88899999864
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2e-15 Score=154.97 Aligned_cols=197 Identities=13% Similarity=0.163 Sum_probs=156.9
Q ss_pred eEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecc
Q 001176 841 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 919 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 919 (1132)
..++|+.||..+++++ ||++|+|++.+...+.....|..+|.++.|+| ||++|++-+.| ..+||++.++..+.+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999998888888889999999999999 99999999999 999999999977776653
Q ss_pred c--cCCeeEEEEcCCC-----CEEEEEcCCCcEEEEECCCccccccee-eeCCCCCCCCCCCceeEEECCCCcEEEE-Ee
Q 001176 920 H--QNRITGLAFSPTL-----NALVSSGADAQLCMWSIDKWEKLKSRF-IQAPAGRQSPLVGETKVQFHNDQTHLLV-VH 990 (1132)
Q Consensus 920 h--~~~V~~l~~spdg-----~~l~s~~~D~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~ 990 (1132)
. ......+.|+.|+ ..++....-+.|+.|++..+..-.... .+....+ ..+++++.|+||++++. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 2 2236677888777 333444455678888876654321111 1111122 36899999999999999 57
Q ss_pred CCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 991 ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 991 d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
+|.|.+++. +.++..... +.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk--~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK--EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeeh--hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999 555554443 67799999999999999999999999999988764
No 210
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=4.2e-13 Score=147.90 Aligned_cols=322 Identities=12% Similarity=0.118 Sum_probs=199.8
Q ss_pred EEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceE
Q 001176 510 FIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 589 (1132)
Q Consensus 510 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 589 (1132)
++++-..++.|.+.|..+.+....+......-..+.++|||+++++++. ++.|.++|+.+++.+.++.... ...
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~--~~~ 81 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG--NPR 81 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS--EEE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC--Ccc
Confidence 3456667899999999998888888766555566889999999999864 6789999999999999987644 467
Q ss_pred EEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCC-----CCCCcceEEEcCCCCEEEEEeC-CCcEEEEEcCCcc
Q 001176 590 VVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADG-----GLPASPRLRFNKEGSLLAVTTS-DNGIKILANSDGV 662 (1132)
Q Consensus 590 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~ 662 (1132)
.+++++||++++++. .++.+.++|..+.+.+..+.... ....+.++..+|....++..-. .+.|.+.|..+..
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 799999999999875 78999999999999998886432 1235667777887775554444 4777777765541
Q ss_pred eeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccC
Q 001176 663 RLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVD 742 (1132)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1132)
.+....
T Consensus 162 ~~~~~~-------------------------------------------------------------------------- 167 (369)
T PF02239_consen 162 NLKVTT-------------------------------------------------------------------------- 167 (369)
T ss_dssp CEEEEE--------------------------------------------------------------------------
T ss_pred ccceee--------------------------------------------------------------------------
Confidence 111000
Q ss_pred ceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEee-cccceeEEEeeccccCCCCCccccccccccccCC
Q 001176 743 KIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL-ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPP 821 (1132)
Q Consensus 743 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~ 821 (1132)
+. .........|+|++++++++ ...+.+.++|....+.. ....
T Consensus 168 ------------------i~-----~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v-------------~~i~ 211 (369)
T PF02239_consen 168 ------------------IK-----VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV-------------ALID 211 (369)
T ss_dssp ------------------EE-------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE-------------EEEE
T ss_pred ------------------ec-----ccccccccccCcccceeeecccccceeEEEeeccceEE-------------EEee
Confidence 00 11234567899999887664 44577878876432210 0111
Q ss_pred CcCcccccCCCCCCCCCCeeEE---------EEeeCCCEEEE-eeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCC
Q 001176 822 SGTLMTNDINESKPTEESAACI---------ALSKNDSYVMS-ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 891 (1132)
Q Consensus 822 ~~~~~~~~~~~~~h~~~~v~~~---------~~s~dg~~la~-~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 891 (1132)
.|... | ..++..+ +.+..+...++ .+.+.+.+||..+++.++++....+. .-+.-+| ++
T Consensus 212 ~g~~p--------~-~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s 280 (369)
T PF02239_consen 212 TGKKP--------H-PGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DS 280 (369)
T ss_dssp -SSSB--------E-ETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-
T ss_pred ccccc--------c-ccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CC
Confidence 11111 1 1111111 11223333322 23556778999999999999987666 7788899 88
Q ss_pred CeEEEE----eCCCcEEEEEcccceeeeeecccc-CCeeEEEEcCCCCEEEEEc--CCCcEEEEECCCcccccc
Q 001176 892 NIIAIG----MEDSSVQIYNVRVDEVKTKLKGHQ-NRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKS 958 (1132)
Q Consensus 892 ~~lasg----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~s~~--~D~~i~iwd~~~~~~~~~ 958 (1132)
+++.+. ...++|.++|..+.+.+..+.... .++..+.|++||+.+..+. .++.|.+||..+.+....
T Consensus 281 ~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 281 RYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred ccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 888887 455899999999998877775333 3589999999999755444 334799999999875543
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1.2e-13 Score=139.15 Aligned_cols=240 Identities=13% Similarity=0.201 Sum_probs=182.1
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCC--cEEEEEcccceee
Q 001176 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYNVRVDEVK 914 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~ 914 (1132)
...+..+.|..|...|..|+....++|+.+..............|--+-|+. .++|..+.+. .+++++...+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4467778899999999999966678888776554333333344566777876 4777666553 5999999888877
Q ss_pred eeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-E--eC
Q 001176 915 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V--HE 991 (1132)
Q Consensus 915 ~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~--~d 991 (1132)
..+. ...+|.++.+.. ++|+.+-.+. |+|||+++-+.+.. ...-.+-...+.++.++..+.+++. + ..
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhT-----I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHT-----IETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehh-----hhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7765 456798998854 4666665554 99999998664332 2221111134666677777789999 3 46
Q ss_pred CeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCc-EEEEeCCCcceecccCCCccccccccCCCCCC
Q 001176 992 SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH 1069 (1132)
Q Consensus 992 ~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1132)
|.|.+||. +......+ ++|.+++.+++|++||.+|||+++.|+ |||+.+.+|+.+..|....+ ...
T Consensus 153 GdV~l~d~~nl~~v~~I---~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---------~~~ 220 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTI---NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---------PVS 220 (391)
T ss_pred ceEEEEEcccceeeeEE---EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---------eeE
Confidence 89999999 77766666 467999999999999999999999997 89999999999999986643 256
Q ss_pred cEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1070 PLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1070 v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
+..++|+| ++.+|.+.+..++|.++.++...
T Consensus 221 IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 221 IYSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 78999999 88999999999999999998866
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.62 E-value=4.1e-14 Score=139.63 Aligned_cols=238 Identities=13% Similarity=0.147 Sum_probs=181.9
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
-..+|+|.+|++|+. .+|++.....|.||.......-. ....+..|...|++|+|+|.++.|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 346899999999998 68888888999999987765211 1223778999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE----EEecCCCCCe
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ----YTFEGHEAPV 497 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~----~~~~~h~~~v 497 (1132)
+|+.|..-++|....+...+....+..|...++++.|+|.++ .|++|+..+.|.||=.+...-- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999977777777777888999999999999998 7999999999999987654422 1223467889
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEc-----CC-------------CCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLY-----DY-------------LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~-----~~-------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
+++.|+|++ -+|++|+.|+..|++.. +. +.....+...++.+..+.|+|+|..|+-.+.
T Consensus 150 ~sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 999999976 79999999999999853 11 1111233356779999999999999998875
Q ss_pred CCCCCeEEEEeCCCCc-eeeeeccccCCceEEEEEeCCCCEEEEEEcC
Q 001176 560 KEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 606 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 606 (1132)
|..+.+-|..... .+........ +..++.|-.+. .++.++.|
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred ---CCceEEeecCCCchhccchhhccC-CceeeEeecCC-ceeecCCC
Confidence 7778888876554 3333333333 56666665443 45555554
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=8.9e-14 Score=160.02 Aligned_cols=269 Identities=13% Similarity=0.191 Sum_probs=185.5
Q ss_pred cccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEE
Q 001176 332 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 410 (1132)
Q Consensus 332 ~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 410 (1132)
..|..+..|+ |...|..++.++....++++||.||+|++||...-..-. ..++ ....+...+..+.+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEK 1103 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEE
Confidence 4567788888 999999999998774489999999999999986532210 0000 00012235678999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEecCC--Ccee--eeeeeecc--cCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001176 411 CVWGPDGLMLGVAFSKHIVHLYTYNPT--GELR--QHLEIDAH--VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 484 (1132)
Q Consensus 411 v~~spdg~~las~~~dg~i~iwd~~~~--~~~~--~~~~l~~h--~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~ 484 (1132)
+.+.+.|+.+|+++.||.|++.+++.. .... +......+ ..-|..-+|....+...++.+..-+.|..||++..
T Consensus 1104 vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1104 VTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred EEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 999999999999999999999998862 1111 11111122 22344445554444336778888899999999887
Q ss_pred eEEEEecC--CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-CCeEEEEEEcC---CCCEEEEEec
Q 001176 485 RKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSA---DGTRLFSCGT 558 (1132)
Q Consensus 485 ~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~---~~~~l~~~~~ 558 (1132)
....+++. ..+.|++++.+|.. .++++|+..|.+.+||++-+..+..+... ..+++.+...| .....++++.
T Consensus 1184 ~~~w~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1184 HDAWRLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hhHHhhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 66555443 45789999998765 79999999999999999988777655432 34666666655 3456666654
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccccCC------------------ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGFRKR------------------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1132)
.+.+.|.+|++.+|.+...+...... ......+...+..+++|+.|..|+.||...
T Consensus 1262 --~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1262 --SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred --cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 24677999999998766665433110 111233344457888999999999999754
No 214
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=8.7e-12 Score=137.50 Aligned_cols=333 Identities=14% Similarity=0.167 Sum_probs=198.5
Q ss_pred cEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEE
Q 001176 464 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 543 (1132)
Q Consensus 464 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 543 (1132)
++++++-..++.|.+.|..+.+.+.++......-..+.+++ ||.++++++.||.|.++|+.+.+....+.. +.....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcce
Confidence 34567777899999999999999999986554444456655 558898899999999999999998777765 445678
Q ss_pred EEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCC
Q 001176 544 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDN 616 (1132)
Q Consensus 544 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 616 (1132)
+++|+||++++++.. ..+.+.++|.++.+.++.+.... ...+..+..+|....++..- +.+.|.+-|...
T Consensus 83 i~~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 999999999998764 46789999999999998876432 22466777888888666554 558888889877
Q ss_pred CeeEE--EEeCCCCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCccccccc
Q 001176 617 MNMLT--TVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINAL 693 (1132)
Q Consensus 617 ~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1132)
.+.+. .+... .......|+|++++++.+ ..++.|-++|..++ +....+...... ..
T Consensus 160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~p-~~---------------- 218 (369)
T PF02239_consen 160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKKP-HP---------------- 218 (369)
T ss_dssp SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSSB-EE----------------
T ss_pred ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccc-eEEEEeeccccc-cc----------------
Confidence 65443 33321 245788999999987665 45678999998887 333322210000 00
Q ss_pred CCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceE
Q 001176 694 GPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 773 (1132)
Q Consensus 694 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 773 (1132)
+ +... +.-+ ..+.+.
T Consensus 219 ------------------------------------------------~--~~~~------------~php---~~g~vw 233 (369)
T PF02239_consen 219 ------------------------------------------------G--PGAN------------FPHP---GFGPVW 233 (369)
T ss_dssp ------------------------------------------------T--TEEE------------EEET---TTEEEE
T ss_pred ------------------------------------------------c--cccc------------ccCC---CcceEE
Confidence 0 0000 0000 000000
Q ss_pred EEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEE
Q 001176 774 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 853 (1132)
Q Consensus 774 ~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la 853 (1132)
+....+...++.-....+ .+|+..+.+++...... ... .-+..+||++++.
T Consensus 234 --~~~~~~~~~~~~ig~~~v----------------------~v~d~~~wkvv~~I~~~----G~g-lFi~thP~s~~vw 284 (369)
T PF02239_consen 234 --ATSGLGYFAIPLIGTDPV----------------------SVHDDYAWKVVKTIPTQ----GGG-LFIKTHPDSRYVW 284 (369)
T ss_dssp --EEEBSSSSEEEEEE--TT----------------------T-STTTBTSEEEEEE-S----SSS---EE--TT-SEEE
T ss_pred --eeccccceecccccCCcc----------------------ccchhhcCeEEEEEECC----CCc-ceeecCCCCccEE
Confidence 011111212111111122 23344444444332211 223 6778899999999
Q ss_pred Ee---e--CCeEEEEECCCCeEEEEeeC-CCCCeEEEEEeCCCCCeEEEEeCC--CcEEEEEcccceeeeeec
Q 001176 854 SA---S--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMED--SSVQIYNVRVDEVKTKLK 918 (1132)
Q Consensus 854 ~~---s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~~~~~l~ 918 (1132)
+. + .++|.++|.++.+...++.. ....+..+.|++ +|+.+-...++ |.|.|||..+.+++.++.
T Consensus 285 vd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 285 VDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred eeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 98 3 37899999999988877753 223599999999 77755544443 369999999999988876
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.5e-13 Score=145.78 Aligned_cols=286 Identities=12% Similarity=0.145 Sum_probs=211.6
Q ss_pred ceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCC--CcCeEEEE
Q 001176 335 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA--AISVNRCV 412 (1132)
Q Consensus 335 ~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~ 412 (1132)
++++.|.+...-+.|..||||+|++|+|...-.|++||+..-..... .| ...|.-.-
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE---------------------RhlDae~V~fei 101 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE---------------------RHLDAEVVDFEI 101 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeee---------------------ecccccceeEEE
Confidence 44667778889999999999999999999999999999987554321 23 23455555
Q ss_pred EcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC
Q 001176 413 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 492 (1132)
Q Consensus 413 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 492 (1132)
+|-|-..++.-..|.+|.+-..-+ .... ..+ ...-.+++++.-... |+.++....|+-.+++.|+.+..|..
T Consensus 102 LsDD~SK~v~L~~DR~IefHak~G-~hy~--~RI---P~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 102 LSDDYSKSVFLQNDRTIEFHAKYG-RHYR--TRI---PKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred eccchhhheEeecCceeeehhhcC-eeee--eec---CcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccc
Confidence 666766677777788776654322 1110 011 112345555544443 44455566899999999999999988
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC------CCC-----eEEEEEEcCCCCEEEEEecCCC
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA------PGN-----WCTMMAYSADGTRLFSCGTSKE 561 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~------~~~-----~v~~~~~s~~~~~l~~~~~~~~ 561 (1132)
..+.++++.+++.. .+|++|+.+|.|.+||.++......+.. +.+ .|+++.|+.+|-.+++|+.
T Consensus 174 ~~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts--- 248 (703)
T KOG2321|consen 174 DSGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS--- 248 (703)
T ss_pred ccccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc---
Confidence 88999999998765 7999999999999999988766554332 222 5999999999999999875
Q ss_pred CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC--CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 562 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
.|.+.+||+++.+++..-.....-+|..+.|.+.+ +.+++. ....++|||-.+|+....+... ..++.+++-|
T Consensus 249 -~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p 323 (703)
T KOG2321|consen 249 -TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT---SDLNDFCFVP 323 (703)
T ss_pred -CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc---CCcCceeeec
Confidence 78899999999887765544344478889997763 445554 4668999999999999888654 3589999999
Q ss_pred CCCEEEEEeCCCcEEEEEcC
Q 001176 640 EGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~ 659 (1132)
++.+++++..++.+..|=+.
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred CCceEEEecCCCcceeEEcc
Confidence 99999999988887776543
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=7e-13 Score=132.91 Aligned_cols=285 Identities=15% Similarity=0.177 Sum_probs=190.8
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC-CCeEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLG 421 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~la 421 (1132)
...+..++|++.-. -+|++..|-.|++||-....... +-......|+|++|-|. ++.|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceee
Confidence 34688899999654 47788899999999976622111 01124558999999995 56788
Q ss_pred EEeCCCeEEEEEecCCCcee-----------eeeeeecccCCEEEEEEecCCCcEEEEEEcC-CCcEEEEECCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELR-----------QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~-----------~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-dg~v~vwd~~~~~~~~~ 489 (1132)
+|+..| |.+|..+...... +...-.+| .+|+++.|.+||. .+++++. |..|.|||+.++..+.-
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 888777 9999875321111 11123355 5899999999999 6777764 67999999999887655
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001176 490 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 569 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 569 (1132)
....-+.+.-+.|+|++ ++|++++-|+..++|.....-.........+.|...+|+|+|++|+.... +. -++|
T Consensus 234 ~~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gs--p~ly 306 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GS--PRLY 306 (445)
T ss_pred cccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CC--ceEE
Confidence 44456778899998865 89999999999999965443333334444559999999999998876553 12 2333
Q ss_pred eCCC----Cc-----------eeeee------cc--ccCCceEEEEEeCCCCEEEEEEcC--------CeEEEEECCCCe
Q 001176 570 NESE----GA-----------IKRTY------SG--FRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMN 618 (1132)
Q Consensus 570 d~~~----~~-----------~~~~~------~~--~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~ 618 (1132)
.+.. +. ++..+ .+ .-.+.+.+++|.|.|.++++.-.. ..|.+||.+..-
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 3211 00 00001 11 112367889999999999985432 346678776544
Q ss_pred eEEEEe--CCCCCCCcceEEEcC---CCCEEEEEeCCCcEEEEEcC
Q 001176 619 MLTTVD--ADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 619 ~~~~~~--~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~ 659 (1132)
.+.... ...+. .-..++|+| ++.+|.++-..|.+.-|.+.
T Consensus 387 ~vels~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 387 PVELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ceEEEecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 443331 11111 245677777 77888888888888888753
No 217
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.59 E-value=2.2e-10 Score=119.06 Aligned_cols=516 Identities=15% Similarity=0.158 Sum_probs=277.9
Q ss_pred cccceEEeecCCCCeeEEEEccCCCeEEEE------EcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCC
Q 001176 332 LTKTVVRTLNQGSNVMSMDFHPQQQTILLV------GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 405 (1132)
Q Consensus 332 ~~~~~~~~l~h~~~V~~~~~spdg~~lla~------g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 405 (1132)
..++..+...|-+-|+...|+|||+.++++ +...+.+.+.+.+.|+.... ..+ |
T Consensus 67 k~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-----------------Tyf-G-- 126 (668)
T COG4946 67 KDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-----------------TYF-G-- 126 (668)
T ss_pred ccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-----------------EEe-c--
Confidence 344555555577889999999999975552 22345677777777775431 012 2
Q ss_pred cCeEE-EEEcCCCCeEEEEeCCCe----EEEEEecCCCc-eeeeeeeecccCCEEEEEEecCCCcEEEEEE---------
Q 001176 406 ISVNR-CVWGPDGLMLGVAFSKHI----VHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC--------- 470 (1132)
Q Consensus 406 ~~V~~-v~~spdg~~las~~~dg~----i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~--------- 470 (1132)
..-+. .-|+|||+.|++...-.- -.+|.+..... .. .| .-++.+.+.+- ||. ++.|
T Consensus 127 r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~L--nlGpathiv~~-dg~---ivigRntydLP~W 197 (668)
T COG4946 127 RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---PL--NLGPATHIVIK-DGI---IVIGRNTYDLPHW 197 (668)
T ss_pred cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---ec--cCCceeeEEEe-CCE---EEEccCcccCccc
Confidence 23333 449999999988754322 23444433221 11 11 23455555553 343 3322
Q ss_pred -----cCCCcEEEEECCC-CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--eEE
Q 001176 471 -----GDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCT 542 (1132)
Q Consensus 471 -----~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~ 542 (1132)
+..| ++|--.. |+.-..+-...+.|.+-.+.. + ...+....||.=.+|..+-.+.-. ..|.. .-.
T Consensus 198 K~YkGGtrG--klWis~d~g~tFeK~vdl~~~vS~PmIV~--~-RvYFlsD~eG~GnlYSvdldGkDl--rrHTnFtdYY 270 (668)
T COG4946 198 KGYKGGTRG--KLWISSDGGKTFEKFVDLDGNVSSPMIVG--E-RVYFLSDHEGVGNLYSVDLDGKDL--RRHTNFTDYY 270 (668)
T ss_pred ccccCCccc--eEEEEecCCcceeeeeecCCCcCCceEEc--c-eEEEEecccCccceEEeccCCchh--hhcCCchhcc
Confidence 2222 3453222 222222222233333322211 1 233334455555555443322211 11211 233
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc---c---cCCc-eEE---E-EEeC-CCCEEEEEEcCCeEE
Q 001176 543 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG---F---RKRS-LGV---V-QFDT-TRNRFLAAGDEFQIK 610 (1132)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~~-v~~---~-~~~~-~~~~l~~~~~dg~i~ 610 (1132)
+-..+.||+.++... .|.|++||..+.+....--+ . .... +.- + .|++ +|++++..| -|+..
T Consensus 271 ~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaF 344 (668)
T COG4946 271 PRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAF 344 (668)
T ss_pred ccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEE
Confidence 344577999988753 45599999987654322111 1 1100 000 1 1332 567777776 46677
Q ss_pred EEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCC-cEEEEEcCCcceeeeeccccccccccCCCCCCCCCccc
Q 001176 611 FWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLT 689 (1132)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1132)
+.+...+-.++.-. ...|.-..+..+++-++.|..|| .+-++|..+++ .-+. ..
T Consensus 345 i~~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~-e~------------------- 399 (668)
T COG4946 345 IMRPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRI-EK------------------- 399 (668)
T ss_pred EECCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEe-eC-------------------
Confidence 77766665554322 22577777777888899999999 89999988772 1111 10
Q ss_pred ccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccc
Q 001176 690 INALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAA 769 (1132)
Q Consensus 690 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 769 (1132)
.-
T Consensus 400 ------------------------------------------------------------------------------~l 401 (668)
T COG4946 400 ------------------------------------------------------------------------------DL 401 (668)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 22
Q ss_pred cceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC
Q 001176 770 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 849 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg 849 (1132)
+.|.++..+++|+.++++.....+.+.|++ +|.+....-.. .+-|+.++|+|++
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vidid----------------------ngnv~~idkS~----~~lItdf~~~~ns 455 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDID----------------------NGNVRLIDKSE----YGLITDFDWHPNS 455 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEec----------------------CCCeeEecccc----cceeEEEEEcCCc
Confidence 457889999999999998888777777654 44433333332 6779999999999
Q ss_pred CEEEEee-C----CeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEe-------CCCcEEEEEcc--cceeee
Q 001176 850 SYVMSAS-G----GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-------EDSSVQIYNVR--VDEVKT 915 (1132)
Q Consensus 850 ~~la~~s-d----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~-------~dg~v~iwd~~--~~~~~~ 915 (1132)
+++|.+- + ..|+++|+.+++..... ...+.-.+-+|.| ++++|..-+ .|..+.=+... +...+.
T Consensus 456 r~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~-d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv 533 (668)
T COG4946 456 RWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDP-DGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLV 533 (668)
T ss_pred eeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCC-CCcEEEEEeccccCCCCCeeEEEEEEeeeccceEE
Confidence 9999986 4 35999999988765443 3445556788999 888876554 23222222211 111111
Q ss_pred eec-cccCCeeEEEEcCCCCEEEE-EcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEE------
Q 001176 916 KLK-GHQNRITGLAFSPTLNALVS-SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL------ 987 (1132)
Q Consensus 916 ~l~-~h~~~V~~l~~spdg~~l~s-~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~------ 987 (1132)
.+. +.. ||-.+..-. -+.++.+-+=++.... .++..-++ .-..++=-.+|+.+.
T Consensus 534 ~L~~g~~--------sP~~q~p~~~~~ea~e~dle~ie~r~----eP~pVee~------dY~sI~~lk~~killfs~pi~ 595 (668)
T COG4946 534 VLGRGYY--------SPFNQPPDEANSEAGEVDLEGIEDRV----EPFPVEEG------DYRSIAGLKNGKILLFSYPIH 595 (668)
T ss_pred EecCCCC--------ChhhcCchhcCccccceehhhhcccc----cccccCcc------ceeEeeecCCCeEEEEEeecc
Confidence 111 111 111111110 1122222222221100 01111111 001111111221111
Q ss_pred -----E--E--eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 988 -----V--V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 988 -----~--~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
. + .-|.+.+||++.+....+ ...++++..|+|++.+.. -.||.+++++++.
T Consensus 596 Gefs~yy~gq~~kG~l~~ydletkk~~e~------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 596 GEFSQYYWGQPEKGRLEKYDLETKKVEEY------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred chhhhhhcCCCccceEEEEecchhhHHHH------hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 1 1 236788999966655554 567999999999999988 7899999999986
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=4.4e-12 Score=125.59 Aligned_cols=238 Identities=13% Similarity=0.165 Sum_probs=169.9
Q ss_pred CeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCC--EEEEEEecCCCcEEEEEEcCC------CcEEE
Q 001176 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG--VNDIAFAHPNKQLCIVTCGDD------KMIKV 478 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~--v~~v~~s~d~~~~~l~s~~~d------g~v~v 478 (1132)
...+++|+.|...+++|..+| .+||+++--+.... -+-+.+. +.-+-| -.+. +.+.||.+ ..|.|
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~---r~~~~~G~~~veMLf--R~N~-laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS---RQFIDGGFKIVEMLF--RSNY-LALVGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhh---hccccCchhhhhHhh--hhce-EEEecCCCCCCCCCceEEE
Confidence 455699999999999998888 99999876332111 1112222 222222 2232 23334333 48999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCC--CeEEEEEEcCCCCEEEE
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPG--NWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~ 555 (1132)
||=...+++.++. ...+|.++.+.+ ..|++. ..+.|.+|... +.+....+.... ....+++-+.+..+|+.
T Consensus 80 WDD~k~~~i~el~-f~~~I~~V~l~r----~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 80 WDDLKERCIIELS-FNSEIKAVKLRR----DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred EecccCcEEEEEE-eccceeeEEEcC----CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEc
Confidence 9977777887775 678899999865 344443 57899999887 444444443322 23444444444445554
Q ss_pred EecCCCCCCeEEEEeCCCCce--eeeeccccCCceEEEEEeCCCCEEEEEEcCCe-EEEEECCCCeeEEEEeCCCCCCCc
Q 001176 556 CGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
-| ...|+|.+-|+...+. ...+..|.. .|.|++.+-+|..++++|..|+ |||||..+|+.+..+........|
T Consensus 154 Pg---~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 154 PG---FKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred CC---CccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 44 3578999999986655 466777777 8999999999999999998887 799999999999999866666689
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 633 PRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+++|||+..+|+++++.|+++++.+...
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999999998764
No 219
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.58 E-value=2e-13 Score=134.92 Aligned_cols=235 Identities=17% Similarity=0.180 Sum_probs=181.3
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC-
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV- 482 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~- 482 (1132)
-..+|+|.+|++|+..+|.+..+..|.||...+.+......++..|...|++++|+|... .|++|+.|..-+||...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346899999999999999999999999999999887777778999999999999999998 79999999999999984
Q ss_pred CCe--EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE----EecCCCCeEEEEEEcCCCCEEEEE
Q 001176 483 AGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 483 ~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
.++ +.-.+..+....+++.|+|.+ +.+++|+.-..|.+|-++....-. .-....+.|.++.|+|++-+|+++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 333 344566788999999999977 789999999999999887654321 223456689999999999999988
Q ss_pred ecCCCCCCeEEEEeCC-----C-------------CceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 557 GTSKEGESHLVEWNES-----E-------------GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~-----~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
+. |+..+++..- . |+++..+. ...+.+..+.|+|+|+.|+-.+.|..+.+-|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 75 6667777541 1 22333343 233479999999999999999999999999987664
Q ss_pred -eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 619 -MLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 619 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
.+...... .-+..++.|-.+...++ ++.|
T Consensus 240 ~~v~~~~~~--~lP~ls~~~ise~~vv~-ag~~ 269 (361)
T KOG1523|consen 240 ERVQSVATA--QLPLLSVSWISENSVVA-AGYD 269 (361)
T ss_pred hhccchhhc--cCCceeeEeecCCceee-cCCC
Confidence 23332221 13566777766554444 3344
No 220
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.58 E-value=1.1e-08 Score=125.50 Aligned_cols=534 Identities=10% Similarity=0.092 Sum_probs=298.1
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEE----EecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLY----TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iw----d~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
..+.|.++.|-++...++.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+..+.++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 55789999999999999999999999999 444422 22 1223466899999999999 67777778888775
Q ss_pred ECCCCeEE------------------------EEecC------------------------CCCCeEEEEeeccCCccEE
Q 001176 480 DVVAGRKQ------------------------YTFEG------------------------HEAPVYSVCPHHKESIQFI 511 (1132)
Q Consensus 480 d~~~~~~~------------------------~~~~~------------------------h~~~v~~i~~~~~~~~~~l 511 (1132)
+ .+...+ ..|+| +...-..|+| .+||.++
T Consensus 148 t-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~yF 224 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW--RGDGEYF 224 (928)
T ss_pred e-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE--CCCCcEE
Confidence 4 211111 11211 1112234455 6678999
Q ss_pred EEEec---C---CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc---
Q 001176 512 FSTAI---D---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG--- 582 (1132)
Q Consensus 512 ~s~s~---d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--- 582 (1132)
++.+. . +.+|+|+-+ +........-.+--.+++|-|.|+++++... ..+...|.+|. ++|-.-..|.-
T Consensus 225 AVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~ 301 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFD 301 (928)
T ss_pred EEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCC
Confidence 88875 2 579999865 3333333333344568899999999998865 23345577776 34444444433
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee--EEEEeCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEEEEcC
Q 001176 583 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 659 (1132)
.....|..+.|++++..|+..-.|. |.+|...+... .+.+..... ..+..+.|+| +...|...+.+|.+..++..
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 2333789999999999999977555 99999888653 334433322 2455699999 55667778877888776653
Q ss_pred CcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccccc
Q 001176 660 DGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAE 739 (1132)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1132)
-. ...+... ...|...++.-
T Consensus 380 ~~-----v~~s~~~-------------------------------------------------------~~~D~g~vaVI 399 (928)
T PF04762_consen 380 WD-----VSRSPGS-------------------------------------------------------SPNDNGTVAVI 399 (928)
T ss_pred EE-----EEecCCC-------------------------------------------------------CccCceEEEEE
Confidence 21 0000000 00011112222
Q ss_pred ccCceeeeecCCCCCCCcc--eEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccccccc
Q 001176 740 DVDKIKSWRIPDISDPSQI--KALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 817 (1132)
Q Consensus 740 ~~~~v~~w~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l 817 (1132)
...++.+-.+....-+..+ ..+.+ ...|..++|++++..+++...||.+.+|.+................+
T Consensus 400 DG~~lllTpf~~a~VPPPMs~~~l~~-----~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~-- 472 (928)
T PF04762_consen 400 DGNKLLLTPFRRAVVPPPMSSYELEL-----PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSI-- 472 (928)
T ss_pred eCCeEEEecccccCCCchHhceEEcC-----CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhc--
Confidence 2345555555543333332 33332 35799999999998899999999999998765332210000000000
Q ss_pred ccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-C---CeEEEEECCCCe---EEEEeeCCCCCeEEEEEeCCC
Q 001176 818 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFK---VMTMFMSPPPAATFLAFHPQD 890 (1132)
Q Consensus 818 ~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-d---g~i~vwd~~~~~---~~~~~~~~~~~i~~l~~sp~~ 890 (1132)
............ . ...+..++|..+..+++... + ..+.+++....+ .......-.+.+..+...+ .
T Consensus 473 ---~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 545 (928)
T PF04762_consen 473 ---SLDSMDISDSEL--P-LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-D 545 (928)
T ss_pred ---cccccccccccc--c-cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-C
Confidence 000000000000 1 45678888888888777765 3 468888874332 2333333344555555555 4
Q ss_pred CCeEEEEeCCCcEEEEEccccee-eeeeccccCCeeEEEEcCCC--CEEEEEcCCCcEEEEECCCcccccceeeeCCCCC
Q 001176 891 NNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPTL--NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR 967 (1132)
Q Consensus 891 ~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg--~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~ 967 (1132)
...++.-..+|.+...+...... +..+..-...+..+.+.... ..++.-+..|.+++ . +. .+.
T Consensus 546 ~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n-~~-----~la----- 611 (928)
T PF04762_consen 546 SGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---N-SR-----LLA----- 611 (928)
T ss_pred CcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---C-CE-----EEe-----
Confidence 44466677899888766554322 22333222222222222221 14444444554442 1 11 111
Q ss_pred CCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCC-CceeecCCC-C--CCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001176 968 QSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL-ECSRSWSPK-D--ALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042 (1132)
Q Consensus 968 ~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~-~~~~~~~~~-~--~h~~~i~~i~~s~dg~~las~~~dg~i~vwd 1042 (1132)
..++++++ .+.+|+. .....+++.++.. ..-...... . .+...++.+ ..|..|+++--...=-|..
T Consensus 612 ----~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~V---ERGsriVt~vp~~~~vVLQ 682 (928)
T PF04762_consen 612 ----SNCTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRV---ERGSRIVTAVPSDTSVVLQ 682 (928)
T ss_pred ----cCCceEEE--EcCEEEEEecCceEEEEECcCchhhcccccCccccccccccccC---ccCCEEEEEeCCCceEEEE
Confidence 23455555 3445555 5677788888751 111111000 0 011223333 4677887776555555666
Q ss_pred CCCcce
Q 001176 1043 AETLRF 1048 (1132)
Q Consensus 1043 ~~~~~~ 1048 (1132)
+.-|.+
T Consensus 683 mPRGNL 688 (928)
T PF04762_consen 683 MPRGNL 688 (928)
T ss_pred cCCCch
Confidence 665543
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=8.1e-15 Score=151.34 Aligned_cols=280 Identities=15% Similarity=0.172 Sum_probs=219.0
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
.-+.+.+.|+.+|++ ++.|+..|.|-.+|+.+++....- .-...|.++.|-.+..++|+
T Consensus 129 eFGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei--------------------~v~Etv~Dv~~LHneq~~AV 187 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEI--------------------NVMETVRDVTFLHNEQFFAV 187 (545)
T ss_pred ccCCeeeeecCCccE-EEecCCccceeeeecccceeeeee--------------------ehhhhhhhhhhhcchHHHHh
Confidence 346788999999996 666777899999999998875431 13347889999999999999
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEe
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 502 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~ 502 (1132)
+ ....+.|||-.+ ..+.+ ++.| ..|..+.|.|--- +|++++..|.++.-|+.+|+.+..+..-.+.+..++-
T Consensus 188 A-QK~y~yvYD~~G-tElHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 188 A-QKKYVYVYDNNG-TELHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred h-hhceEEEecCCC-cEEee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence 8 456699999664 44554 3333 4789999999866 8999999999999999999999999888889999988
Q ss_pred eccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc
Q 001176 503 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 582 (1132)
Q Consensus 503 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1132)
+|.+ ..+-+|...|+|.+|.....+++..+..|.++|.++++.++|+++++.|. |..+.|||++....+.++..
T Consensus 260 NP~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 260 NPYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CCcc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec
Confidence 8876 78999999999999999999999999999999999999999999999986 77899999998887777665
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCeEEEEE-CCC--CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 583 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD-MDN--MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
.. ....+++|..| +++.+....|.||. .-. +..-..+..|.....|..+.|.|-...|-+|...|.-.+.-..
T Consensus 334 p~--~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPG 409 (545)
T KOG1272|consen 334 PH--PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPG 409 (545)
T ss_pred CC--Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccC
Confidence 22 56678888765 55555666899994 222 1222222233334489999999987788877776655554333
Q ss_pred Cc
Q 001176 660 DG 661 (1132)
Q Consensus 660 ~~ 661 (1132)
.|
T Consensus 410 sG 411 (545)
T KOG1272|consen 410 SG 411 (545)
T ss_pred CC
Confidence 33
No 222
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.57 E-value=2.7e-11 Score=138.60 Aligned_cols=278 Identities=13% Similarity=0.128 Sum_probs=190.0
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCC--cCeEEEEEcCCCCeEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA--ISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~spdg~~la 421 (1132)
..+.+.++-. ++++| | ..-.|.+||+..+..+.. + .+...+..|. +.+. -.+-+++
T Consensus 8 ~~l~~~~~~~--~~lla-g-~gp~i~~yd~~s~~li~~--~-----------~~~~~~~~H~~e~~~~-----l~~~~~v 65 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLA-G-SGPEILVYDLSSGCLIRH--L-----------IQSKILEVHRGEGKVK-----LLSGKIV 65 (967)
T ss_pred ccccchhhcc--ceeee-c-CCCceEEeeCCchhHhhh--h-----------hhhcccccccccccce-----eccceEE
Confidence 3445555544 34444 3 246899999998876542 1 1111233340 0110 0233455
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCe--EE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV--YS 499 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v--~~ 499 (1132)
++..-+.+..=+..-. .+..-.+.|....+..+.+ .++.++.+..+.+||...+.....+...+... .+
T Consensus 66 ~~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~ 136 (967)
T KOG0974|consen 66 TCAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSS 136 (967)
T ss_pred EEEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeE
Confidence 5544333333222211 1112234455556666667 67888888999999998887766655332211 11
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee-
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR- 578 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~- 578 (1132)
+-+-...+.-++++|+.-+.|.+|+.........+.+|.+.|.++.++.||+++++++. |..+++|++.+++...
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCc
Confidence 11222333478999999999999999866666678999999999999999999999985 7789999999988776
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
+.-+|.. .+..++|.|+ .++++++|.+.++|+.+. ..+..+..|... .+..++..++...+++++.|+.+++|++
T Consensus 213 ~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g~-~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 213 TGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSGK-GIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ccccccc-eeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhhc-ceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 5667777 7888999987 899999999999997654 444477766543 6899999999999999999999999998
Q ss_pred CCc
Q 001176 659 SDG 661 (1132)
Q Consensus 659 ~~~ 661 (1132)
.+.
T Consensus 288 ~~r 290 (967)
T KOG0974|consen 288 NGR 290 (967)
T ss_pred hcc
Confidence 654
No 223
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.5e-13 Score=157.55 Aligned_cols=221 Identities=13% Similarity=0.131 Sum_probs=145.0
Q ss_pred Eeec-CCCCeeEEEEccCCCeEEEEEcC--CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 338 RTLN-QGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 338 ~~l~-h~~~V~~~~~spdg~~lla~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
+.+. +...+.+++|||||++++.++.. +..|++||+.+++..... .+.+| ..+++||
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~wS 256 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAFS 256 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeEC
Confidence 4444 77889999999999965444322 247999999887542210 02223 3468999
Q ss_pred CCCCeEEEEe-CCCeEEEE--EecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEe
Q 001176 415 PDGLMLGVAF-SKHIVHLY--TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTF 490 (1132)
Q Consensus 415 pdg~~las~~-~dg~i~iw--d~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~ 490 (1132)
|||++|+.++ .+|.+.|| |+.++. .. .+..+...+....|+|||+. ++++...++...||++... .....+
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGT-PS---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCC-eE---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe
Confidence 9999988865 67766665 555544 22 35567777889999999994 3344556788888876532 222333
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
.+.. ....|+|+ |..|+.++.++ +.+||+.++........ .....+.|+|||++|+.++. ++...+|+
T Consensus 332 -~~~~--~~~~~SpD--G~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~----~g~~~~l~ 399 (429)
T PRK01742 332 -GGRG--YSAQISAD--GKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST----QGLGKVLQ 399 (429)
T ss_pred -cCCC--CCccCCCC--CCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc----CCCceEEE
Confidence 3433 34667664 47887777765 55599987765432222 23356789999999999875 33345554
Q ss_pred C--CCCceeeeeccccCCceEEEEEeCC
Q 001176 571 E--SEGAIKRTYSGFRKRSLGVVQFDTT 596 (1132)
Q Consensus 571 ~--~~~~~~~~~~~~~~~~v~~~~~~~~ 596 (1132)
+ .+|+.++.+..+.. .+...+|+|-
T Consensus 400 ~~~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 400 LVSADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred EEECCCCceEEccCCCC-CCCCcccCCC
Confidence 3 35777888876665 6777888874
No 224
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=8.7e-12 Score=135.28 Aligned_cols=570 Identities=12% Similarity=0.111 Sum_probs=336.3
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
......|++|+.... ++|+|+.||.++|-.+.+...-... --+...+.-.....+.||.+.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~----~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNK----SGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccc----cccccccccchhhhhccCcceEEEEEecccccccc
Confidence 445789999999887 6999999999999998764321110 00011111111234889999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE-EEecCCCCCeEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHEAPVYSV 500 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~h~~~v~~i 500 (1132)
+...+|.|.+|-+-.|.-.... .-.....-|.+++|+.||. .+.....||.|.|=.+...+.- +.+++. ....+
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv 162 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHV 162 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccce
Confidence 9999999999999887543321 1123456789999999999 6777888998887665433221 223321 23356
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCC-------ceEE----ecCCCCeEEEEEEc--------CCCCEEEEEecCCC
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLG-------SRVD----YDAPGNWCTMMAYS--------ADGTRLFSCGTSKE 561 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-------~~~~----~~~~~~~v~~~~~s--------~~~~~l~~~~~~~~ 561 (1132)
.|+++. ..++.+-..|.+.+||....- +... +...+..+..+.|. ||-..|+.|..
T Consensus 163 ~ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~--- 237 (1189)
T KOG2041|consen 163 LWSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA--- 237 (1189)
T ss_pred eecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc---
Confidence 676654 677777788999999875321 1111 11122235555552 46678888864
Q ss_pred CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC---------CeEEEEECCCCeeEEEEeCCCCCCCc
Q 001176 562 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
+|++.+..-........+... -.+..+.|+++|..++++|.+ +.|.+|.. -|+.+.+++.++. .|
T Consensus 238 -nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 238 -NGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CI 311 (1189)
T ss_pred -CceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--ee
Confidence 555655543322222222211 156778999999999998743 25666654 4677777877655 79
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCC
Q 001176 633 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 712 (1132)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 712 (1132)
++++|-..|-.++.+ .|+.|.+=+++... ....+.....
T Consensus 312 t~lsWEg~gLriA~A-vdsfiyfanIRP~y-kWgy~e~TvV--------------------------------------- 350 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIA-VDSFIYFANIRPEY-KWGYIEETVV--------------------------------------- 350 (1189)
T ss_pred eeeEEcCCceEEEEE-ecceEEEEeecccc-eEEEeeeEEE---------------------------------------
Confidence 999998888777765 46688776665441 1111111000
Q ss_pred CCCCcccCccCcCCcccccccccccccc---cCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecc
Q 001176 713 GPPAVSISSLGTIDGSRLVDVKPRVAED---VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS 789 (1132)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 789 (1132)
++-... .-.|.+||..+....-+. -....++++..+--.|++-..
T Consensus 351 ----------------------y~y~~~e~p~y~i~Fwdtk~nek~vK~----------V~~~~~~a~~~ehCvL~~~~d 398 (1189)
T KOG2041|consen 351 ----------------------YVYQKEELPQYGIMFWDTKTNEKTVKT----------VTHFENMAFYREHCVLINRQD 398 (1189)
T ss_pred ----------------------EEEccCCCcceEEEEEecccChhhhhh----------hcceeehheecccEEEEeccc
Confidence 000001 135788888764332221 122345555555444555555
Q ss_pred cceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCe
Q 001176 790 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 869 (1132)
Q Consensus 790 dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~ 869 (1132)
+|.+.-++.-. .+ .......+-+ .-|..+.. . -..|.-.-..-++.+++.++...+.+|.....+
T Consensus 399 ~~~i~e~s~le-~~------~~~~~l~LCN-SIGT~lD~------k-ytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK 463 (1189)
T KOG2041|consen 399 DGVIPEYSTLE-NR------SRVYFLQLCN-SIGTSLDY------K-YTDIRPKFVCVNGICVVIASEERYFIWHYVLPK 463 (1189)
T ss_pred cCCCcchhhhh-cc------cceEEEeeec-ccCCcCCC------C-cceeeeeEEEecceEEEEeccccEEEEEEeccc
Confidence 55554331100 00 0000000000 00111100 0 112332333447888999998889999876654
Q ss_pred EEEEeeC---CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEE
Q 001176 870 VMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLC 946 (1132)
Q Consensus 870 ~~~~~~~---~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~ 946 (1132)
....+.+ |...- |+- ...-+|+.|+++. .. ..++.|..++|.+++.| .++|..+-..|.|.
T Consensus 464 ~~s~l~~~k~rkegr----~h~---Ddtp~ga~d~~l~---ys----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~ 527 (1189)
T KOG2041|consen 464 FNSVLAGVKIRKEGR----FHG---DDTPEGAQDRTLE---YS----TKTLLGSKDPICALCIS--DKFLMVARESGGIY 527 (1189)
T ss_pred hhhhhhhhhhccccc----ccC---CCCccchhhceee---cc----ceeeccCCCcceeeeec--ceEEEEEeccCceE
Confidence 4333332 21111 322 1223455665442 11 35677888999999885 57888888999999
Q ss_pred EEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC----CCCceeecCCCCCCCCCeEEEE
Q 001176 947 MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS----KLECSRSWSPKDALPAPISSAI 1021 (1132)
Q Consensus 947 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~----~~~~~~~~~~~~~h~~~i~~i~ 1021 (1132)
-|.+.+........+ ...+..++..-+..++++ -.-|.+.+.|+ ++..+..+.... ...|+.+.
T Consensus 528 rySl~nv~l~n~y~~---------n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~e--rrDVWd~~ 596 (1189)
T KOG2041|consen 528 RYSLNNVVLTNSYPV---------NPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSE--RRDVWDYE 596 (1189)
T ss_pred EEEecceeeeecccc---------CchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhh--hhhhhhhh
Confidence 999987543221111 135678888888888887 45677777776 444544333222 67789999
Q ss_pred EccCCCEEEEEecCCcEEEEeCCCcc
Q 001176 1022 YSCDGLLVYAGFCDGAIGVFDAETLR 1047 (1132)
Q Consensus 1022 ~s~dg~~las~~~dg~i~vwd~~~~~ 1047 (1132)
|..|...|++--+-..++|++-.+-+
T Consensus 597 Wa~dNp~llAlmeKtrmyifrgndpe 622 (1189)
T KOG2041|consen 597 WAQDNPNLLALMEKTRMYIFRGNDPE 622 (1189)
T ss_pred hccCCchHHhhhhhceEEEecCcCcc
Confidence 99888766655555667777765543
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.5e-12 Score=146.95 Aligned_cols=237 Identities=10% Similarity=0.103 Sum_probs=157.1
Q ss_pred cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC---CCeEEEEEecCCCceeee
Q 001176 367 DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQH 443 (1132)
Q Consensus 367 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~---dg~i~iwd~~~~~~~~~~ 443 (1132)
.|.+||.+...... +..+...+.+.+|||||+.||..+. +..|.+|++.+++...
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-- 237 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-- 237 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--
Confidence 68888877554321 3346678999999999999987643 4579999998875322
Q ss_pred eeeecccCCEEEEEEecCCCcEEEEEEcCCC--cEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEec-CCeE
Q 001176 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKI 520 (1132)
Q Consensus 444 ~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i 520 (1132)
+....+.+..++|+|||+. ++++.+.+| .|++||+.+++.. .+..+...+....|+|++ +.|+.++. ++..
T Consensus 238 --l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG--~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 --VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDS--QNLAYTSDQAGRP 311 (429)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCC--CEEEEEeCCCCCc
Confidence 2223334557899999995 233334454 5899999888764 444455567788898754 66766665 4444
Q ss_pred EEE--EcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCC
Q 001176 521 KAW--LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN 598 (1132)
Q Consensus 521 ~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1132)
.+| |+.++.. ..+...........|+|||++++..+.. ++...|++||+.+++... +.... ......|+|||+
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG~ 386 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNGT 386 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeEE-eCCCC--CCCCceECCCCC
Confidence 555 5554433 3344444456678999999999877642 235679999998876443 33221 234578999999
Q ss_pred EEEEEEcCCe---EEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 599 RFLAAGDEFQ---IKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 599 ~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
.++.++.++. ++++++. +.....+..+.+ .+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 9999886654 6777874 444555554433 577888886
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.9e-12 Score=128.52 Aligned_cols=261 Identities=13% Similarity=0.139 Sum_probs=161.2
Q ss_pred ccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeC
Q 001176 769 ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 848 (1132)
Q Consensus 769 ~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~d 848 (1132)
...|++++|-|.+...++.+-.+.|.+|.......... .++......+++ +.+.+ ...|+++.+.+|
T Consensus 140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r-------~~~~~s~~~~qv----l~~pg--h~pVtsmqwn~d 206 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR-------NIRMMSTHHLQV----LQDPG--HNPVTSMQWNED 206 (445)
T ss_pred hcceeEEEeccCCcceeeeeecceeEEEEcCccccccc-------ccccccccchhh----eeCCC--CceeeEEEEcCC
Confidence 35689999999776655555566789997653211000 000001111111 22212 478999999999
Q ss_pred CCEEEEee--CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeE
Q 001176 849 DSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 926 (1132)
Q Consensus 849 g~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 926 (1132)
|..+++++ |..|.|||.+++..+.......+.++-+.||| |+.+|..++-|+..++|......-..+...-.+.|..
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt 285 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT 285 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence 99999998 67899999999887666555667899999999 9999999999999999954433222222223458999
Q ss_pred EEEcCCCCEEEE-EcCCCcEEEEECCCccc--cc--------ceee------eCCCCCCCCCCCceeEEECCCCcEEEEE
Q 001176 927 LAFSPTLNALVS-SGADAQLCMWSIDKWEK--LK--------SRFI------QAPAGRQSPLVGETKVQFHNDQTHLLVV 989 (1132)
Q Consensus 927 l~~spdg~~l~s-~~~D~~i~iwd~~~~~~--~~--------~~~~------~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 989 (1132)
.+|+|+|++|.- ++... ++|.+.-..+ .. ...+ ....+......+..+++|.|.|.+|++.
T Consensus 286 acWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred eeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence 999999987654 43333 3343321110 00 0011 1112222223677899999999999995
Q ss_pred eC---------CeEEEEeC-CCCceeecCCCCCCCCCeEEEEEcc---CCCEEEEEecCCcEEEEeCCC
Q 001176 990 HE---------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSC---DGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 990 ~d---------~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~---dg~~las~~~dg~i~vwd~~~ 1045 (1132)
.. ..|..||. +.........+..-...-..++|+| +|.+|..+=..|.+.-|++.-
T Consensus 364 fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 364 FKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred EcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 32 23566777 2222221111111122244566765 677888887888888887763
No 227
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.7e-13 Score=142.70 Aligned_cols=298 Identities=15% Similarity=0.158 Sum_probs=212.1
Q ss_pred cccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEE
Q 001176 766 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 845 (1132)
Q Consensus 766 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 845 (1132)
..|.+.|..+.|+..|..|++++.|..+.+||+...+. ......+ | ...|....|
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~----------------------~l~f~SG--H-~~NvfQaKF 193 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP----------------------KLSFESG--H-CNNVFQAKF 193 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCc----------------------ccccccc--c-ccchhhhhc
Confidence 34889999999999999999999999999999864332 1111222 5 555655556
Q ss_pred ee--CCCEEEEee-CCeEEEEECCC-CeE--EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeee--
Q 001176 846 SK--NDSYVMSAS-GGKVSLFNMMT-FKV--MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-- 917 (1132)
Q Consensus 846 s~--dg~~la~~s-dg~i~vwd~~~-~~~--~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-- 917 (1132)
-| +.+-+++.+ ||.|++=.+.. +.+ ...+..|.++|.-++.-|+...-+.+++.|+.+.-+|+..+.....+
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c 273 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC 273 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee
Confidence 55 344566666 99999877643 332 34566799999999999977788899999999999999876433332
Q ss_pred -ccccC---CeeEEEEcCCCC-EEEEEcCCCcEEEEECCCcccc------cceeeeCCCCCCCCCCCceeEEECCCCcEE
Q 001176 918 -KGHQN---RITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKL------KSRFIQAPAGRQSPLVGETKVQFHNDQTHL 986 (1132)
Q Consensus 918 -~~h~~---~V~~l~~spdg~-~l~s~~~D~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 986 (1132)
..+.. ....++..|... .+++++.|..+++||...-... ...+-..+.. .....|++++|+.++.-|
T Consensus 274 r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~--d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 274 READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE--DDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc--cCcccceeEEecCCccce
Confidence 23333 467788888765 7999999999999998653322 1111111111 112678999999666555
Q ss_pred EE-EeCCeEEEEeC---CC----------CceeecCCCCCC--CCCeEEEEE-ccCCCEEEEEecCCcEEEEeCCCccee
Q 001176 987 LV-VHESQISVYDS---KL----------ECSRSWSPKDAL--PAPISSAIY-SCDGLLVYAGFCDGAIGVFDAETLRFR 1049 (1132)
Q Consensus 987 ~~-~~d~~v~vwd~---~~----------~~~~~~~~~~~h--~~~i~~i~~-s~dg~~las~~~dg~i~vwd~~~~~~~ 1049 (1132)
.+ -.|-.|+++.- .+ ..... ...+| ...|..+.| -|...++++|+..|.|.||+-.+++.+
T Consensus 352 LaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~--vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 352 LASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKR--VYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred eeeecccceEEeccccccCCCCCCCcchhhccch--hhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 55 68889999965 22 11111 12344 346888876 588999999999999999999999988
Q ss_pred cccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccc
Q 001176 1050 CRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1104 (1132)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~ 1104 (1132)
..+. +...-|-|+.-+|.. -+|+++|-|.-|+||-..+.++.+
T Consensus 430 ~~Me-----------gDr~VVNCLEpHP~~-PvLAsSGid~DVKIWTP~~~er~~ 472 (559)
T KOG1334|consen 430 RFME-----------GDRHVVNCLEPHPHL-PVLASSGIDHDVKIWTPLTAERAT 472 (559)
T ss_pred HHhh-----------cccceEeccCCCCCC-chhhccCCccceeeecCCcccccc
Confidence 7765 333466677777833 599999999999999997777544
No 228
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=2.1e-12 Score=127.83 Aligned_cols=242 Identities=17% Similarity=0.224 Sum_probs=170.2
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCC--eEEEEEeCCCCCeEE-EEeCC------CcEEEEE
Q 001176 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIA-IGMED------SSVQIYN 907 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~--i~~l~~sp~~~~~la-sg~~d------g~v~iwd 907 (1132)
+....+++|..|...+++|.|...+||+.+-.+.......+.+. +.-+-|- .++|| +|+.+ ..|.|||
T Consensus 5 ~~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 5 EPKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred cCceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEe
Confidence 34456799999999999999989999998865443332222222 3333332 23444 44433 4799999
Q ss_pred cccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCc-ccccceeeeCCCCCCCCCCCceeEEECCCCcEE
Q 001176 908 VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW-EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 986 (1132)
Q Consensus 908 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 986 (1132)
=....++.++. ...+|.++.++++ .++.+- .+.|++|..... +.+. .+...... .+..+++-+.+..+|
T Consensus 82 D~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~--~~et~~NP----kGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 82 DLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLH--VIETRSNP----KGLCSLCPTSNKSLL 151 (346)
T ss_pred cccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhhee--eeecccCC----CceEeecCCCCceEE
Confidence 66677777776 6788999999765 555554 567999999843 2221 22222211 123444444445566
Q ss_pred EE-E-eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCc-EEEEeCCCcceecccCCCcccccccc
Q 001176 987 LV-V-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAV 1063 (1132)
Q Consensus 987 ~~-~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~ 1063 (1132)
+. | .-|+|.+-|+..........-.+|.+.|.+++++-+|.+|||+|..|+ |||||..+|+.++.+...
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-------- 223 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-------- 223 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC--------
Confidence 66 4 469999999933322111112567999999999999999999999998 899999999999988744
Q ss_pred CCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1064 SSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1064 ~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
.....+.+++|+| +..+|+++|..|+|.++.+...+
T Consensus 224 -~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 224 -VDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred -CchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 3347789999999 88999999999999999998765
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=4.4e-13 Score=141.22 Aligned_cols=118 Identities=26% Similarity=0.431 Sum_probs=106.4
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeee
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 915 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 915 (1132)
...|...+|+|||++||+.+ ||.+||||..+.+++..++.--+...|++||| ||++|++|+.|--|.||.+..++.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 55788999999999999999 99999999999999888887788999999999 99999999999999999999999999
Q ss_pred eeccccCCeeEEEEcC-------------------------------C----C-------------CEEEEEcCCCcEEE
Q 001176 916 KLKGHQNRITGLAFSP-------------------------------T----L-------------NALVSSGADAQLCM 947 (1132)
Q Consensus 916 ~l~~h~~~V~~l~~sp-------------------------------d----g-------------~~l~s~~~D~~i~i 947 (1132)
+-++|.+-|..++|.| + + -.+.++|.|-.+++
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 0 1 24778899999999
Q ss_pred EECCCccc
Q 001176 948 WSIDKWEK 955 (1132)
Q Consensus 948 wd~~~~~~ 955 (1132)
||+.....
T Consensus 449 WDlteD~L 456 (636)
T KOG2394|consen 449 WDLTEDVL 456 (636)
T ss_pred Eecchhhc
Confidence 99987543
No 230
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1e-13 Score=145.75 Aligned_cols=242 Identities=11% Similarity=0.176 Sum_probs=166.1
Q ss_pred Eeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-
Q 001176 338 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP- 415 (1132)
Q Consensus 338 ~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 415 (1132)
..|. |.+-|.|++|+.||. +|++||.|-.+.|||.-..+.++. +-.||...|.++.|-|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~ 104 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPY 104 (758)
T ss_pred hhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeecc
Confidence 3455 999999999999998 899999999999999986665542 2468999999999999
Q ss_pred -CCCeEEEEeCCCeEEEEEecCCC-------ceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE-
Q 001176 416 -DGLMLGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK- 486 (1132)
Q Consensus 416 -dg~~las~~~dg~i~iwd~~~~~-------~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~- 486 (1132)
+.+.+++|..|..|+++|+...+ .......+..|...|..++-.|++.+ .+.+++.||+|+-+|++....
T Consensus 105 tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 105 TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccC
Confidence 56789999999999999998521 12223345679999999999999966 799999999999999986321
Q ss_pred ------EE---EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-----cCCCCeEEEEE-EcCCCC
Q 001176 487 ------QY---TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMA-YSADGT 551 (1132)
Q Consensus 487 ------~~---~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~~-~s~~~~ 551 (1132)
.. .+...--...++.++|... .+|+.|+.|-..++||.+...+...- ........|+. |+|.+-
T Consensus 184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 184 NPDEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL 262 (758)
T ss_pred CccccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence 11 1111123456778888755 79999999999999996432221110 00111111221 122211
Q ss_pred EEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEE
Q 001176 552 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 623 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1132)
+. .+ +.... .-..++-+.|+|+|..|++.-..-.|+++|+..++....+
T Consensus 263 ----kn----~~----------gn~~~-----~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 263 ----KN----SQ----------GNLDR-----YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ----cC----cc----------ccccc-----ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 00 00 10000 0003556889999977777555668999999987765544
No 231
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.3e-10 Score=126.46 Aligned_cols=521 Identities=11% Similarity=0.136 Sum_probs=311.3
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
.-++|+ |...|.-+.|+.+.+. |.++..+|.|.||-+-.|..... .+-...++-|.+++|+
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~EE-----------------MiNnRnKSvV~SmsWn 124 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCEE-----------------MINNRNKSVVVSMSWN 124 (1189)
T ss_pred hhhhhccCcceEEEEEecccccc-ccccCCCceEEEEeeecccHHHH-----------------HhhCcCccEEEEEEEc
Confidence 356677 9999999999999885 88999999999999988865432 0122356789999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-------eEE
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-------RKQ 487 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-------~~~ 487 (1132)
.||..++....||.|.+=.+++++.... .+++. -...+.|++|.+ .+..+-..|.+.++|-+.. .+.
T Consensus 125 ~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLkg~--~l~hv~ws~D~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~ 198 (1189)
T KOG2041|consen 125 LDGTKICIVYEDGAVIVGSVDGNRIWGK--ELKGQ--LLAHVLWSEDLE--QALFKKANGETHLYDNQGNFERKLEKDCE 198 (1189)
T ss_pred CCCcEEEEEEccCCEEEEeeccceecch--hcchh--eccceeecccHH--HHHhhhcCCcEEEecccccHHHhhhhceE
Confidence 9999999999999999998887654432 23332 234789999998 5667777899999995422 111
Q ss_pred EE----ecCCCCCeEEEEeecc------CCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001176 488 YT----FEGHEAPVYSVCPHHK------ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 488 ~~----~~~h~~~v~~i~~~~~------~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1132)
.. +......|..++|... ++...++.+-..|.+.+-.-.+......+.. +-.+....|+++|..|+.||
T Consensus 199 Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 199 VNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred EeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec-ccEeecceecCCCcEEEEcc
Confidence 11 1112233555655421 3557899999999999886665555554443 36788999999999999998
Q ss_pred cCCCC----C-CeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001176 558 TSKEG----E-SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 558 ~~~~~----~-~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
.+.+. + +.|.++. .-|+.+.+++.... .|++++|-..|-.++.+ .|+.|++=+++-.-.-..+.. .
T Consensus 278 ~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~-~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~-----T- 348 (1189)
T KOG2041|consen 278 NDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS-CITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEE-----T- 348 (1189)
T ss_pred CcccccCccccceEEEec-cchhheEEEecCCc-eeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeee-----E-
Confidence 74432 2 2455555 45788888887766 89999998877666655 588888877764322222210 1
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCC
Q 001176 633 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 712 (1132)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 712 (1132)
+.+-..+.- .-.-.|.+||..+.++.++.......- ..
T Consensus 349 --vVy~y~~~e----~p~y~i~Fwdtk~nek~vK~V~~~~~~-a~----------------------------------- 386 (1189)
T KOG2041|consen 349 --VVYVYQKEE----LPQYGIMFWDTKTNEKTVKTVTHFENM-AF----------------------------------- 386 (1189)
T ss_pred --EEEEEccCC----CcceEEEEEecccChhhhhhhcceeeh-he-----------------------------------
Confidence 111111100 012357889988886555544332110 00
Q ss_pred CCCCcccCccCcCCcccccccccccccc-cCceeeeecCCCCCCCcceEEec------CCcccccceEEEEEecCCceEE
Q 001176 713 GPPAVSISSLGTIDGSRLVDVKPRVAED-VDKIKSWRIPDISDPSQIKALRL------PDSIAASKVVRLIYTNSGLSLL 785 (1132)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~w~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~s~~g~~l~ 785 (1132)
..+.-.++... ++.+.-+. +.........+.+ +-...-..|.-.-..-++..++
T Consensus 387 -----------------~~ehCvL~~~~d~~~i~e~s--~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vv 447 (1189)
T KOG2041|consen 387 -----------------YREHCVLINRQDDGVIPEYS--TLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVV 447 (1189)
T ss_pred -----------------ecccEEEEeccccCCCcchh--hhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEE
Confidence 00000111111 12222110 0000000001111 0011112233333444666666
Q ss_pred eecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEE
Q 001176 786 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 864 (1132)
Q Consensus 786 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd 864 (1132)
.++.+ .+.+|.....++..... +...+ - .+. ..+...| +|+ |+++ +
T Consensus 448 iAS~e-~~~iWhy~~pK~~s~l~--------------~~k~r--k------egr-~h~Ddtp------~ga~d~~l---~ 494 (1189)
T KOG2041|consen 448 IASEE-RYFIWHYVLPKFNSVLA--------------GVKIR--K------EGR-FHGDDTP------EGAQDRTL---E 494 (1189)
T ss_pred Eeccc-cEEEEEEeccchhhhhh--------------hhhhc--c------ccc-ccCCCCc------cchhhcee---e
Confidence 66655 57788765443311100 00000 0 000 0111112 222 3322 2
Q ss_pred CCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCc
Q 001176 865 MMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 944 (1132)
Q Consensus 865 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~ 944 (1132)
.. ..++.|..++|.+++.+. ++|.++-..|.|.-|.+.+.-+..... -+..|+.++.+-+...+|.-.--|.
T Consensus 495 ys----~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv 566 (1189)
T KOG2041|consen 495 YS----TKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGV 566 (1189)
T ss_pred cc----ceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhce
Confidence 11 356777889999999975 689999999999999998877666554 4567889999888888888888888
Q ss_pred EEEEECCC---cccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeC
Q 001176 945 LCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS 999 (1132)
Q Consensus 945 i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~ 999 (1132)
+.+.|+.- +..+. .+-.... ..|..+.|..|+..+++- ....+.+++-
T Consensus 567 ~tf~dLd~d~~g~ql~--~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 567 VTFQDLDYDFDGDQLK--LIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred eeeeecccccCcceee--eeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecC
Confidence 88888872 22111 1111111 457788888887766663 4445666665
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=7.4e-12 Score=144.20 Aligned_cols=237 Identities=10% Similarity=0.026 Sum_probs=161.0
Q ss_pred CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC---CCeEEEEEecCCCceee
Q 001176 366 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQ 442 (1132)
Q Consensus 366 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~---dg~i~iwd~~~~~~~~~ 442 (1132)
..|.+||........ +..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 378888876543321 4467889999999999999988764 468999999887543
Q ss_pred eeeeecccCCEEEEEEecCCCcEEEEEEcCCCc--EEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEec-CC-
Q 001176 443 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG- 518 (1132)
Q Consensus 443 ~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg- 518 (1132)
.+..+.+.+.+.+|+|||+. ++++.+.++. |++||+.+++. ..+..+........|+|++ ..|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG--SQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCC--CEEEEEECCCCC
Confidence 24456667889999999995 3456666654 77789887765 4566666667778887754 66766653 33
Q ss_pred -eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC
Q 001176 519 -KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 597 (1132)
Q Consensus 519 -~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 597 (1132)
.|.+||+..+.. ..+......+....|+|||++|+..... .+...|.+||+..+.. +.+... . .+....|+|||
T Consensus 314 ~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG 388 (435)
T PRK05137 314 PQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNG 388 (435)
T ss_pred CeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCC
Confidence 577788765443 3333344556778999999999887642 2345799999865543 333321 1 35668899999
Q ss_pred CEEEEEEcC------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 598 NRFLAAGDE------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 598 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
+.++..+.+ ..++++|+.++.. ..+... ..+...+|+|
T Consensus 389 ~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~---~~~~~p~Wsp 432 (435)
T PRK05137 389 RVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP---GDASDPAWSP 432 (435)
T ss_pred CEEEEEEccCCCCCcceEEEEECCCCce-EEccCC---CCccCcccCC
Confidence 988775532 3688888876554 344322 1356677776
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=7e-14 Score=144.50 Aligned_cols=232 Identities=15% Similarity=0.179 Sum_probs=192.7
Q ss_pred CcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001176 405 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 484 (1132)
Q Consensus 405 ~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~ 484 (1132)
.-.-..+.++.+|+.|+.|+..|.|..+|+.++.... ++. -...|.++.|..+.+ ++|.+ ....++||| ..|
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD-~~G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYD-NNG 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHhh-hhceEEEec-CCC
Confidence 3356789999999999999999999999999976544 222 245799999998887 55554 578999999 889
Q ss_pred eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCC
Q 001176 485 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 564 (1132)
Q Consensus 485 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1132)
..++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+-.+-.|.. .|
T Consensus 201 tElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nG 273 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NG 273 (545)
T ss_pred cEEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cc
Confidence 999988865 568889998865 78899999999999999999999988888889999999998877777753 88
Q ss_pred eEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE
Q 001176 565 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 644 (1132)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1132)
+|.+|...+.+++..+.+|.. +|.++++.++|.+++++|.|..++|||++....+.++... .....+++|..| +|
T Consensus 274 tVSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkg-lL 348 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKG-LL 348 (545)
T ss_pred eEEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCcccccccccc-ce
Confidence 999999999999999999988 9999999999999999999999999999988776666542 256788888766 44
Q ss_pred EEEeCCCcEEEEE
Q 001176 645 AVTTSDNGIKILA 657 (1132)
Q Consensus 645 ~~~~~dg~i~iw~ 657 (1132)
|.+. ...|.+|.
T Consensus 349 A~~~-G~~v~iw~ 360 (545)
T KOG1272|consen 349 ALSY-GDHVQIWK 360 (545)
T ss_pred eeec-CCeeeeeh
Confidence 4443 44888995
No 234
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=2.3e-12 Score=135.92 Aligned_cols=253 Identities=10% Similarity=0.118 Sum_probs=169.0
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE-----cCCCC
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW-----GPDGL 418 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-----spdg~ 418 (1132)
..+....++-.|.++.+-- ...+++|+...+..+.. ++....+.+. ...|-+| .|++-
T Consensus 124 g~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~-------------pi~k~~y~gt--~P~cHdfn~~~a~~~g~ 186 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSK-------------PIDKREYKGT--SPTCHDFNSFTATPKGL 186 (636)
T ss_pred cceeeccccCCCCEEEEec--CCeEEEEEccCcchhcc-------------chhhhcccCC--CCceecccccccCCCCc
Confidence 3566677777788655543 35789999886544331 1122122222 2334444 34566
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeee--cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCC
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
-|..|-.-|.|.+.|....+..+ ..... -.+..|+|+.|-|.+.. .++..-.+|.++++|.. +...
T Consensus 187 dllIGf~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~ 254 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCG 254 (636)
T ss_pred ceEEeeccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------cccc
Confidence 78888888999999876532211 11111 12468999999998876 56677789999999961 1112
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 576 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1132)
.+..++..-.++..+.....-+. .+..++..+....+.|...+|+|||++|++.+. |+.++|+|..+.++
T Consensus 255 ~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQEL 324 (636)
T ss_pred CCCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHH
Confidence 22222222223333332211110 111334444445568999999999999999985 89999999999988
Q ss_pred eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001176 577 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 638 (1132)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1132)
+..++..-. ...|++|+|||+++++||+|-.|.||.+...+.+..-.+| ...|..++|.
T Consensus 325 lg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH--kSWVs~VaFD 383 (636)
T KOG2394|consen 325 LGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH--KSWVSVVAFD 383 (636)
T ss_pred HHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc--ccceeeEeec
Confidence 888877776 7999999999999999999999999999999888775555 5588999987
No 235
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=4.7e-12 Score=144.65 Aligned_cols=236 Identities=9% Similarity=0.034 Sum_probs=151.9
Q ss_pred eeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEc--CCCcEEEEecCCCccccccceeeeecccccccccccccCC
Q 001176 326 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 326 ~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
+|..|...........+...+.+.+|||||+.++.+.. .+..|.+|++.+++... +..
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~ 240 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VAS 240 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccC
Confidence 44444333333333346678999999999997555432 34579999998876432 112
Q ss_pred CCcCeEEEEEcCCCCeEEEE-eCCC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC-CC--cEE
Q 001176 404 AAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DK--MIK 477 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-dg--~v~ 477 (1132)
..+.+..++|||||+.|+.. +.+| .|.+||+++++... +..+...+....|+|||+ .|+..+. ++ .|.
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVY 314 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCC--EEEEEeCCCCCceEE
Confidence 23345568999999988865 3444 58899998875432 334455678899999999 5554443 44 455
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 478 vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
++|+.+++. ..+..+........|+|++ ..|+..+.+ ..|.+||+.++.... +.. ........|+|||++|+
T Consensus 315 ~~d~~~g~~-~~lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~ 389 (429)
T PRK03629 315 KVNINGGAP-QRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVI 389 (429)
T ss_pred EEECCCCCe-EEeecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEE
Confidence 557766654 3444444445667787754 677665543 358889988765433 332 22344678999999999
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
..+.++ +...+.++++. |.....+.++.. .+...+|+|
T Consensus 390 ~~s~~~-~~~~l~~~~~~-G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 390 YSSSQG-MGSVLNLVSTD-GRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEEcCC-CceEEEEEECC-CCCeEECccCCC-CcCCcccCC
Confidence 887633 24458888874 555666766554 677788876
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.6e-12 Score=146.50 Aligned_cols=238 Identities=13% Similarity=0.090 Sum_probs=158.0
Q ss_pred CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC---CeEEEEEecCCCceee
Q 001176 366 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQ 442 (1132)
Q Consensus 366 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d---g~i~iwd~~~~~~~~~ 442 (1132)
..|.+||...+.... +..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 468888886543221 34567789999999999999987643 469999998876432
Q ss_pred eeeeecccCCEEEEEEecCCCcEEEEEEcCCC--cEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe-cCCe
Q 001176 443 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGK 519 (1132)
Q Consensus 443 ~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~ 519 (1132)
+..+.+...+++|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|+|++ ..|+.++ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDG--KSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCC
Confidence 3334445568899999995 334555555 699999988875 4555565556678887754 6666665 4455
Q ss_pred --EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC
Q 001176 520 --IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 597 (1132)
Q Consensus 520 --i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 597 (1132)
|.++|+.+++. ..+..........+|+|||++++....+ ++...|.+||+.+++......+. ......|+|||
T Consensus 316 ~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~~Lt~~~---~~~~p~~spdG 390 (433)
T PRK04922 316 PQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVRTLTPGS---LDESPSFAPNG 390 (433)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeEECCCCC---CCCCceECCCC
Confidence 55566655443 3333334445578999999999877542 23457999999887755322221 23457899999
Q ss_pred CEEEEEEc---CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 598 NRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 598 ~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
++++..+. .+.|++++... .....+..+. ..+...+|+|
T Consensus 391 ~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 391 SMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred CEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 98887664 34688888854 3444444332 2466677776
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=4e-12 Score=129.33 Aligned_cols=272 Identities=11% Similarity=0.143 Sum_probs=192.9
Q ss_pred CCCeeEEEEccCCCe-EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 343 GSNVMSMDFHPQQQT-ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~-lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
...|++++|--|++. ++...+.|..+............. .|+++. ......+|..++.. | ..|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~-d-g~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA-D-GTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc-C-CEEE
Confidence 357888888776653 333333666666666665554332 133222 23345566666653 3 3577
Q ss_pred EEeCCCeEEEEEecCCCcee-eeeeeecccCCEEEEEEecCCCcEEEEEEcCC--CcEEEEECCCCeEEEEecC------
Q 001176 422 VAFSKHIVHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEG------ 492 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d--g~v~vwd~~~~~~~~~~~~------ 492 (1132)
+|-.+|.+.+|..+.+..-. ....+..+ ..+..|.-++.... ++++||.. ..+.+||++..+.+.+-+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 77889999999998543110 11123223 46777777777665 67779998 8999999999876654332
Q ss_pred -C--CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 493 -H--EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 493 -h--~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
- .-+++++.|.+..+...+++++.-+.+|+||.+.++. +..+.....+++++...|+|++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1 2245667787765568999999999999999987665 4477778889999999999999999854 677999
Q ss_pred EeCCCCceeee-eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC
Q 001176 569 WNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 569 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
+|++.++.... +.+..+ .++++..+|.+++++++|-|+.|||+|+.+.+++....... ..+++-+.+
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 99999998877 666555 89999999999999999999999999999977766554332 345555543
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=6.5e-12 Score=143.79 Aligned_cols=223 Identities=13% Similarity=0.095 Sum_probs=146.4
Q ss_pred CCCCcCeEEEEEcCCCCeEEEEeCC---CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 402 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...|
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~I 266 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQI 266 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCceE
Confidence 3467789999999999999887643 469999999876432 3333455678999999994 3346677887666
Q ss_pred EE--CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEcCCC-CceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 479 WD--VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 479 wd--~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
|. +..+. ...+..+........|+|++ ..|+..+ .+|...+|.++.. +....+..........+|+|||++|+
T Consensus 267 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 267 YTVNADGSG-LRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEECCCCC-cEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 65 44443 55666666666777887754 6666555 3566777765432 22222333333445678999999998
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeeEEEEeCCCCCCC
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVDADGGLPA 631 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1132)
..+..+ +...|++||+.+++....... . ......|+|+|+.|+.++.++ .+++.+. ++.....+..+.+ .
T Consensus 344 ~~s~~~-g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~ 416 (427)
T PRK02889 344 YISRVG-GAFKLYVQDLATGQVTALTDT-T--RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--D 416 (427)
T ss_pred EEEccC-CcEEEEEEECCCCCeEEccCC-C--CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--C
Confidence 776422 244799999988875443322 1 235678999999988876433 3566666 3555555544332 5
Q ss_pred cceEEEcC
Q 001176 632 SPRLRFNK 639 (1132)
Q Consensus 632 v~~~~~s~ 639 (1132)
+...+|+|
T Consensus 417 ~~~p~wsp 424 (427)
T PRK02889 417 VREPSWGP 424 (427)
T ss_pred CCCCccCC
Confidence 66777876
No 239
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=9e-11 Score=125.37 Aligned_cols=229 Identities=14% Similarity=0.204 Sum_probs=159.8
Q ss_pred eEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCC--CCeEEE-----EeCCCcEEEEEccccee
Q 001176 841 ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD--NNIIAI-----GMEDSSVQIYNVRVDEV 913 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~--~~~las-----g~~dg~v~iwd~~~~~~ 913 (1132)
++..|+.|..+.|--..+.+.+|+..+.+.+.. +-|...|+.+.+|| + ...||+ ++.-+.|+||.+.-...
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecC-CCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 689999999887766789999999987443222 22678899999999 5 344554 34556899998863221
Q ss_pred eeee---ccccCCeeEEEEcCCCCE---EEEEcCC---------CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEE
Q 001176 914 KTKL---KGHQNRITGLAFSPTLNA---LVSSGAD---------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ 978 (1132)
Q Consensus 914 ~~~l---~~h~~~V~~l~~spdg~~---l~s~~~D---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 978 (1132)
-..+ .-....=..+.|.+-|.- |++...| .++++.++++.. +...+... ++|.++.
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-----~~V~L~k~----GPVhdv~ 277 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-----VSVPLLKE----GPVHDVT 277 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce-----EEEecCCC----CCceEEE
Confidence 1111 001112234778877753 2333333 368888887322 11111111 6899999
Q ss_pred ECCCCcEEEEEe---CCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEe---cCCcEEEEeCCCcceeccc
Q 001176 979 FHNDQTHLLVVH---ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF---CDGAIGVFDAETLRFRCRI 1052 (1132)
Q Consensus 979 ~s~dg~~l~~~~---d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~---~dg~i~vwd~~~~~~~~~~ 1052 (1132)
|+|+|+-+++.. -..+.+||++++.+..+. .++-+++.|+|.|++|+.++ ..|.|.|||+.+.+++..+
T Consensus 278 W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 278 WSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred ECCCCCEEEEEEecccceEEEEcCCCCEeEeCC-----CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 999999888843 578999999998887764 56788999999999988765 4578999999998888776
Q ss_pred CCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeC------CCcEEEEecCC
Q 001176 1053 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMS------DGAVHVVEPSD 1099 (1132)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------Dg~i~vW~~~~ 1099 (1132)
.. ...+-+.|+| ||.+++|++. |+.++||+..-
T Consensus 353 ~a-------------~~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 353 KA-------------ANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred cc-------------CCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecC
Confidence 52 2345789999 8888887764 68899999854
No 240
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=5.9e-12 Score=144.73 Aligned_cols=236 Identities=12% Similarity=0.109 Sum_probs=150.9
Q ss_pred eeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcC--CCcEEEEecCCCccccccceeeeecccccccccccccCC
Q 001176 326 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 326 ~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
++.+|...........+...+.+.+|||||+.++.+... +..|.+||+.+++... +..
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~ 245 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VAS 245 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------ecc
Confidence 444554333333333477889999999999965544422 3469999998876432 222
Q ss_pred CCcCeEEEEEcCCCCeEEE-EeCCC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc-CCCc--EE
Q 001176 404 AAISVNRCVWGPDGLMLGV-AFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKM--IK 477 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las-~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~dg~--v~ 477 (1132)
+.+...+++|||||+.|+. .+.+| .|.+||+.+++.. .+..+.......+|+|||+ .|+..+ .+|. |+
T Consensus 246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy 319 (433)
T PRK04922 246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIY 319 (433)
T ss_pred CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceEE
Confidence 3445567899999998764 45555 5999999887633 2445555567889999999 455444 4444 77
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 478 vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
++|+.+++.. .+..+.......+|+|++ +.|+..+.++ .|.+||+.++... .+. +........|+|||++++
T Consensus 320 ~~dl~~g~~~-~lt~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~ 394 (433)
T PRK04922 320 RVAASGGSAE-RLTFQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVL 394 (433)
T ss_pred EEECCCCCeE-EeecCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEE
Confidence 7787776643 332233344567887754 6776655433 6999999776544 333 223445679999999988
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
..+.. .+...|+++++. +.....+..+.. .+...+|+|
T Consensus 395 ~~s~~-~g~~~L~~~~~~-g~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 395 YATRE-GGRGVLAAVSTD-GRVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEec-CCceEEEEEECC-CCceEEcccCCC-CCCCCccCC
Confidence 77643 345679999885 444455544332 455566765
No 241
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.47 E-value=6.7e-12 Score=125.31 Aligned_cols=341 Identities=13% Similarity=0.236 Sum_probs=218.4
Q ss_pred eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEEC-CCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001176 576 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM-DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 654 (1132)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1132)
.++.++|+.+ .++....-|..+-+++.+.|.++++|-- +.++.-..+... ...+++++.+.++...|++|-..|++.
T Consensus 16 ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 16 LLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-MPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-CCCCceEeeeeccceEEEEEEecceEE
Confidence 4566777776 7777777788888999999999999954 445544444322 234788999999999999999999988
Q ss_pred EEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccc
Q 001176 655 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 734 (1132)
Q Consensus 655 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1132)
-+.+...-......+
T Consensus 94 efs~sedfnkm~~~r----------------------------------------------------------------- 108 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLK----------------------------------------------------------------- 108 (404)
T ss_pred EEEhhhhhhhcchhh-----------------------------------------------------------------
Confidence 876643311110000
Q ss_pred cccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccc
Q 001176 735 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVA 814 (1132)
Q Consensus 735 ~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 814 (1132)
.| ..|...+..+.|+..-..+++.+.|..+. |...
T Consensus 109 -----------~~------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~--------------- 143 (404)
T KOG1409|consen 109 -----------DY------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCT--------------- 143 (404)
T ss_pred -----------hh------------------hhhhcceeeEEecCCceeEEEeccccceE-EEee---------------
Confidence 00 12667788888888888888888886654 3221
Q ss_pred cccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEEC--CCCeEEEEeeCCCCCeEEEEEeCCCC
Q 001176 815 PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM--MTFKVMTMFMSPPPAATFLAFHPQDN 891 (1132)
Q Consensus 815 ~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~--~~~~~~~~~~~~~~~i~~l~~sp~~~ 891 (1132)
+.+.-+..... ....+++.+.-. +...|. .|.|.+-.+ ....++.++.+|.+.+++++|.| ..
T Consensus 144 ------e~~~~lg~Y~~-----~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~ 209 (404)
T KOG1409|consen 144 ------ESGNRLGGYNF-----ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQ 209 (404)
T ss_pred ------ccCCcccceEe-----eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CC
Confidence 11111110000 111112222111 444554 455544433 45678899999999999999999 88
Q ss_pred CeEEEEeCCCcEEEEEcccce-eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeC-------
Q 001176 892 NIIAIGMEDSSVQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA------- 963 (1132)
Q Consensus 892 ~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~------- 963 (1132)
++|.+|..|..+.+||+..++ ....+.+|.+.|..+...+--+.|++++.||.|.+|+++.........+..
T Consensus 210 ~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~ 289 (404)
T KOG1409|consen 210 RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCN 289 (404)
T ss_pred cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhC
Confidence 999999999999999997654 345688999999999998888999999999999999998654322111110
Q ss_pred -----------------CCCCC-C-CCCCceeEEECCCCcEEEEEeCCeEEEEeC--------CCCceeecCCCCCCCCC
Q 001176 964 -----------------PAGRQ-S-PLVGETKVQFHNDQTHLLVVHESQISVYDS--------KLECSRSWSPKDALPAP 1016 (1132)
Q Consensus 964 -----------------~~~~~-~-~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~--------~~~~~~~~~~~~~h~~~ 1016 (1132)
..-|. . ....+...+-+.-..+...+..-.+++-|. +...++.+ +.-...
T Consensus 290 qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~p---hei~tg 366 (404)
T KOG1409|consen 290 QPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIP---HEIKTG 366 (404)
T ss_pred chHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccc---cccccc
Confidence 00000 0 001111112111222222244445665554 12112221 222457
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 1017 ISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 1017 i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
|++|.+-.+-.+|+|++.|..|+|||+..
T Consensus 367 ItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 367 ITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred eeEEEhhhhccceeecCCceEEEEEechh
Confidence 99999988888999999999999999975
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=8.3e-12 Score=142.89 Aligned_cols=238 Identities=15% Similarity=0.147 Sum_probs=148.9
Q ss_pred CceeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCC--CcEEEEecCCCccccccceeeeeccccccccccccc
Q 001176 324 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 401 (1132)
Q Consensus 324 ~~~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1132)
..++..|...........+...+.+.+|||||+.++++...+ ..|.+||+.+++... +
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l 235 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------V 235 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------e
Confidence 344555543333333345778899999999999655544322 469999998886432 2
Q ss_pred CCCCcCeEEEEEcCCCCeEEE-EeCCCeEEEEEec--CCCceeeeeeeecccCCEEEEEEecCCCcEEEE-EEcCCCcEE
Q 001176 402 NDAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV-TCGDDKMIK 477 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las-~~~dg~i~iwd~~--~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~-s~~~dg~v~ 477 (1132)
....+.+.+.+|||||+.|+. .+.+|...||.++ ++. .. .+..+...+....|+|||+. |+ +...++...
T Consensus 236 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~--l~f~s~~~g~~~ 309 (427)
T PRK02889 236 ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS--IYFTSDRGGAPQ 309 (427)
T ss_pred ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE--EEEEecCCCCcE
Confidence 223445678999999998874 5678876777654 333 22 34445556677899999994 44 444456666
Q ss_pred EEEC--CCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001176 478 VWDV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 552 (1132)
Q Consensus 478 vwd~--~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 552 (1132)
+|.+ .+++.. .+..+.......+|+|+ |++|+..+.++ .|.+||+.+++.... .. ........|+|||+.
T Consensus 310 Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpD--G~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg~~ 384 (427)
T PRK02889 310 IYRMPASGGAAQ-RVTFTGSYNTSPRISPD--GKLLAYISRVGGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNGRY 384 (427)
T ss_pred EEEEECCCCceE-EEecCCCCcCceEECCC--CCEEEEEEccCCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCCCE
Confidence 6654 444432 22222233445678774 47787766554 699999987664432 22 233467899999999
Q ss_pred EEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC
Q 001176 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
|+..+..+ +...+++.+. ++.....+..+.. .+...+|+|
T Consensus 385 l~~~~~~~-g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 385 ILYATQQG-GRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred EEEEEecC-CCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 99887533 3455777777 4555555544333 456667776
No 243
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.46 E-value=7.1e-08 Score=118.47 Aligned_cols=516 Identities=14% Similarity=0.161 Sum_probs=288.7
Q ss_pred cCeEEEEEcCCCCeEEE--EeCCC--eEEEEEecCCCceeeeeeee-----cccCCEEEEEEecCCCcEEEEEEcCCCcE
Q 001176 406 ISVNRCVWGPDGLMLGV--AFSKH--IVHLYTYNPTGELRQHLEID-----AHVGGVNDIAFAHPNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las--~~~dg--~i~iwd~~~~~~~~~~~~l~-----~h~~~v~~v~~s~d~~~~~l~s~~~dg~v 476 (1132)
..+...+|.+..+.+.. +.... .|.+..............+. ...+.|.++.|.+|.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 35777788776554433 32222 34444444333222222332 2346899999999998 57777788999
Q ss_pred EEE----ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcC---------------C--------CC
Q 001176 477 KVW----DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD---------------Y--------LG 529 (1132)
Q Consensus 477 ~vw----d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~---------------~--------~~ 529 (1132)
.+. |..+... .....-...|.+++|+|+. .+|+.++.++++.+-..+ . ++
T Consensus 100 ~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~--Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 100 ILVREDPDPDEDEI-EIVGSVDSGILAASWSPDE--ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEEEccCCCCCcee-EEEEEEcCcEEEEEECCCc--CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence 998 5444332 2222346789999999866 788888888888765311 0 00
Q ss_pred ceEEecC------------------------CCCeEEEEEEcCCCCEEEEEecCCC-C-CCeEEEEeCCCCceeeeeccc
Q 001176 530 SRVDYDA------------------------PGNWCTMMAYSADGTRLFSCGTSKE-G-ESHLVEWNESEGAIKRTYSGF 583 (1132)
Q Consensus 530 ~~~~~~~------------------------~~~~v~~~~~s~~~~~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~ 583 (1132)
+...+.+ ....-..++|-.||.++++.+.+.. + .+.+++|+-+ |.+..+-. .
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~ 254 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-P 254 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-c
Confidence 0000100 2224568899999999998876332 2 5789999965 66544443 2
Q ss_pred cCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCeeEEEEeCC--CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 584 RKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
..+--.+++|-|.|+.+++... ...|.+|.-+. -.-..+... .....|..+.|++|+..||....| .|.+|-.
T Consensus 255 v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~ 332 (928)
T PF04762_consen 255 VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTR 332 (928)
T ss_pred CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEe
Confidence 2223456899999999988653 45677777544 222233322 233478999999999999998766 4999987
Q ss_pred CCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccc
Q 001176 659 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 738 (1132)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1132)
.+- .......-
T Consensus 333 ~NY-HWYLKqei-------------------------------------------------------------------- 343 (928)
T PF04762_consen 333 SNY-HWYLKQEI-------------------------------------------------------------------- 343 (928)
T ss_pred eCC-EEEEEEEE--------------------------------------------------------------------
Confidence 665 22111100
Q ss_pred cccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecC-CceEEeecccceeEEEeeccccCCCCCcccccccccc
Q 001176 739 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 817 (1132)
Q Consensus 739 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l 817 (1132)
.++ ....+..+.|+|. ...|...+.+|.+..+++.
T Consensus 344 -----------------------~~~---~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------ 379 (928)
T PF04762_consen 344 -----------------------RFS---SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA------------------ 379 (928)
T ss_pred -----------------------Ecc---CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE------------------
Confidence 000 0111222555553 2335555555666665542
Q ss_pred ccCCCcCcccccCCCCCCCCCCeeEEEEee-CCCEEEEeeCCeEEEEECCCCeE---E--EEeeCCCCCeEEEEEeCCCC
Q 001176 818 WQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSASGGKVSLFNMMTFKV---M--TMFMSPPPAATFLAFHPQDN 891 (1132)
Q Consensus 818 ~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~-dg~~la~~sdg~i~vwd~~~~~~---~--~~~~~~~~~i~~l~~sp~~~ 891 (1132)
|+...+.. .+| |...+++.+..++.+-.+...-. + ..+. -...|.+++|++ ++
T Consensus 380 ~~v~~s~~-------------------~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~ 438 (928)
T PF04762_consen 380 WDVSRSPG-------------------SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SN 438 (928)
T ss_pred EEEEecCC-------------------CCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CC
Confidence 11111100 011 23344555555677766654321 1 2222 346799999999 67
Q ss_pred CeEEEEeCCCcEEEEEcccceee--------eeec----------cccCCeeEEEEcCCCCEEEEEcCC---CcEEEEEC
Q 001176 892 NIIAIGMEDSSVQIYNVRVDEVK--------TKLK----------GHQNRITGLAFSPTLNALVSSGAD---AQLCMWSI 950 (1132)
Q Consensus 892 ~~lasg~~dg~v~iwd~~~~~~~--------~~l~----------~h~~~V~~l~~spdg~~l~s~~~D---~~i~iwd~ 950 (1132)
..+|+-..||.|.+|........ ..+. .-...+..++|..+...++....+ ..+.++++
T Consensus 439 ~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI 518 (928)
T ss_pred CeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence 66889999999999986543211 1111 123357788888777766665554 57888887
Q ss_pred CCcccc-cceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCCCcee--ecCCCCCCCCCeEEEEEccCC
Q 001176 951 DKWEKL-KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSR--SWSPKDALPAPISSAIYSCDG 1026 (1132)
Q Consensus 951 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~--~~~~~~~h~~~i~~i~~s~dg 1026 (1132)
...+.. ......... ..+..+...++...++. ..+|.+..++..+.... .+.. .-+...+....+.
T Consensus 519 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~----~c~~~~~~~~~~~ 588 (928)
T PF04762_consen 519 DDSENSASVESSTEVD------GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ----PCPWMEVCQINGS 588 (928)
T ss_pred ccCCCceeEEEEeccC------ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC----CCcEEEEEEECCc
Confidence 443211 111111111 23444454555553444 77898887776333222 2211 2222333333333
Q ss_pred C---EEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1027 L---LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1027 ~---~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
. .++.-+..|.+++ ++..++ ..++++..+ +.+|+-.+....+++.++.
T Consensus 589 ~~~~~~~GLs~~~~Ly~----n~~~la-----------------~~~tSF~v~---~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 589 EDKRVLFGLSSNGRLYA----NSRLLA-----------------SNCTSFAVT---DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred cceeEEEEECCCCEEEE----CCEEEe-----------------cCCceEEEE---cCEEEEEecCceEEEEECc
Confidence 3 3333344454543 233321 234455554 3567667778889999998
No 244
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=9.4e-11 Score=125.23 Aligned_cols=335 Identities=15% Similarity=0.177 Sum_probs=206.4
Q ss_pred CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEE-----Ec-----CC
Q 001176 538 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-----GD-----EF 607 (1132)
Q Consensus 538 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----dg 607 (1132)
.......++|++|++++.+. +..+.|++..++..+.+.... .+..+.|+|.+.+|.+- .. .-
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCC
Confidence 33467889999999999885 556999999888644444433 47789999999988762 12 23
Q ss_pred eEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCc
Q 001176 608 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 687 (1132)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1132)
.+.+|++.++.....+..... .-++..|+.|..+.+ --..+.+.+|++.+-......+.....
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q--~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i-------------- 168 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQ--NGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGI-------------- 168 (566)
T ss_pred ceeeeeeccceehhheehhhh--cCcccccccchhhhh-hhhcceEEEEecCCccceeeeeeccce--------------
Confidence 477999999666666554332 226888998876543 233568999998764333333322111
Q ss_pred ccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCC--CCcceEEecCC
Q 001176 688 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISD--PSQIKALRLPD 765 (1132)
Q Consensus 688 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~--~~~~~~~~~~~ 765 (1132)
..+.++|.++.. +...+ .+ -.-|.-..+++|....... ....+.+.
T Consensus 169 -------------~~f~lSpgp~~~-----~vAvy-------vP----e~kGaPa~vri~~~~~~~~~~~~a~ksFF--- 216 (566)
T KOG2315|consen 169 -------------TMLSLSPGPEPP-----FVAVY-------VP----EKKGAPASVRIYKYPEEGQHQPVANKSFF--- 216 (566)
T ss_pred -------------eeEEecCCCCCc-----eEEEE-------cc----CCCCCCcEEEEeccccccccchhhhcccc---
Confidence 122333332100 00000 00 0012236788888773221 11112211
Q ss_pred cccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEE
Q 001176 766 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 845 (1132)
Q Consensus 766 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 845 (1132)
...=..+.|++-|.-|++.... |++.... ..-...++.+.+.. |.-....+.. .++|.++.|
T Consensus 217 ---kadkvqm~WN~~gt~LLvLast------dVDktn~----SYYGEq~Lyll~t~-g~s~~V~L~k----~GPVhdv~W 278 (566)
T KOG2315|consen 217 ---KADKVQMKWNKLGTALLVLAST------DVDKTNA----SYYGEQTLYLLATQ-GESVSVPLLK----EGPVHDVTW 278 (566)
T ss_pred ---ccceeEEEeccCCceEEEEEEE------eecCCCc----cccccceEEEEEec-CceEEEecCC----CCCceEEEE
Confidence 1222456677777655433221 0100000 00011112223333 4334444554 789999999
Q ss_pred eeCCCEEEEee---CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCC---CcEEEEEcccceeeeeecc
Q 001176 846 SKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRVDEVKTKLKG 919 (1132)
Q Consensus 846 s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d---g~v~iwd~~~~~~~~~l~~ 919 (1132)
+|+|+-++++. -.++.|||+. +.++..+ ..++-+++-|+| .|++|+.++-+ |.|-|||+.+.+++..+..
T Consensus 279 ~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a 354 (566)
T KOG2315|consen 279 SPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA 354 (566)
T ss_pred CCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhcccccc
Confidence 99999887775 4789999985 5555544 467788999999 88988887754 8999999999999988876
Q ss_pred ccCCeeEEEEcCCCCEEEEEcC------CCcEEEEECCCc
Q 001176 920 HQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDKW 953 (1132)
Q Consensus 920 h~~~V~~l~~spdg~~l~s~~~------D~~i~iwd~~~~ 953 (1132)
-.. +-..|+|||.+++|+.. |+.++||+....
T Consensus 355 ~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 355 ANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 554 44799999999998874 678999999763
No 245
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=2.2e-13 Score=150.68 Aligned_cols=219 Identities=15% Similarity=0.169 Sum_probs=153.6
Q ss_pred EEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 337 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 337 ~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
.+++. |...-+|++||-+.+ .|++|+..|.|+++++.+|..... ..+|..+|+.+.=|.
T Consensus 1094 w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~ 1153 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSV 1153 (1516)
T ss_pred chhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccC
Confidence 45566 788999999999998 699999999999999999987654 678999999999999
Q ss_pred CCCeEEEEeCCC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe-cC
Q 001176 416 DGLMLGVAFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EG 492 (1132)
Q Consensus 416 dg~~las~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~ 492 (1132)
||..+.+.+.-. ...+|++.+-. ...+.+. .-.++.|+..... . +.|.....+.+||++++..+.++ .+
T Consensus 1154 dgs~~Ltsss~S~PlsaLW~~~s~~--~~~Hsf~----ed~~vkFsn~~q~-r-~~gt~~d~a~~YDvqT~~~l~tylt~ 1225 (1516)
T KOG1832|consen 1154 DGSTQLTSSSSSSPLSALWDASSTG--GPRHSFD----EDKAVKFSNSLQF-R-ALGTEADDALLYDVQTCSPLQTYLTD 1225 (1516)
T ss_pred CcceeeeeccccCchHHHhcccccc--Ccccccc----ccceeehhhhHHH-H-HhcccccceEEEecccCcHHHHhcCc
Confidence 999877665433 47899987622 2222222 3467899876553 2 33444457899999999877663 22
Q ss_pred ---CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001176 493 ---HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 569 (1132)
Q Consensus 493 ---h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 569 (1132)
....-+...|+|.. .+++- || .+||++..+.+..+..-. .--.-.|+|.|..++..+ .+|
T Consensus 1226 ~~~~~y~~n~a~FsP~D--~LIln---dG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS---------EIw 1288 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSPCD--TLILN---DG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS---------EIW 1288 (1516)
T ss_pred chhhhhhccccccCCCc--ceEee---Cc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec---------hhh
Confidence 22223566677764 44442 33 479999876665544322 112335899999998864 479
Q ss_pred eCCCCceeeeeccccCCceEEEEEeCCCCEEEEE
Q 001176 570 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 603 (1132)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1132)
|+++.+.+++...-.+ ..+.|+..|+.++..
T Consensus 1289 D~RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1289 DMRTFKLLHSVPSLDQ---CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred hhHHHHHHhcCccccc---eEEEeccCccchhhh
Confidence 9999988877765543 457788888776653
No 246
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1e-10 Score=123.97 Aligned_cols=318 Identities=12% Similarity=0.177 Sum_probs=204.5
Q ss_pred cceeeecCCCCCCceecc------CCcccceEEeecCCCCeeEEEEccCCCeEEEEEcC-----------CCcEEEEecC
Q 001176 312 SDEVSFAGVAHTPNVYSQ------DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN-----------VGDISLWEVG 374 (1132)
Q Consensus 312 v~~~~~~~~g~~~~~~~~------d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~-----------dg~v~iwd~~ 374 (1132)
-.-|.|||-|.++++... +......++.+-|. .|.-+.|||+.++ |+|=+. ...++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccce-EEEecCCccccCcccCCCceEEEEEcc
Confidence 345889999999887643 34444555566665 7999999999995 666432 2579999999
Q ss_pred CCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEE
Q 001176 375 SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVN 454 (1132)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~ 454 (1132)
+|..... |.+. .+....-.-+.||.|++++|--..+ .|.||+..+-..+.. ..+ .-..|.
T Consensus 291 tG~lkrs--F~~~--------------~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ksl--ki~gIr 350 (698)
T KOG2314|consen 291 TGLLKRS--FPVI--------------KSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KSL--KISGIR 350 (698)
T ss_pred ccchhcc--eecc--------------CCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecc-ccc--CCcccc
Confidence 9987653 2211 1111112236899999999987665 499999876433221 111 234688
Q ss_pred EEEEecCCCcEEEEEEcC-----CCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEE----------ecCCe
Q 001176 455 DIAFAHPNKQLCIVTCGD-----DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST----------AIDGK 519 (1132)
Q Consensus 455 ~v~~s~d~~~~~l~s~~~-----dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~----------s~dg~ 519 (1132)
...|+|.+. +||--.. -..+.+-.+.+++.+++-.-|. |..+..+-..+|.+|+.- +.-..
T Consensus 351 ~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n 426 (698)
T KOG2314|consen 351 DFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN 426 (698)
T ss_pred CcccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEee
Confidence 999999988 6654332 2356677777777776654443 444444445566676543 12223
Q ss_pred EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-C---ceeeeeccccCCceEEEEEeC
Q 001176 520 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-G---AIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 520 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
+.|+.++........-.-...|...+|-|.|+.+++.+.. +...++.+|.+++ . +++..+.. ...+.+.|+|
T Consensus 427 ~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsP 502 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSP 502 (698)
T ss_pred EEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc---cccceEEEcC
Confidence 5566666554444333345578899999999988766532 3466788888773 2 23334433 2567799999
Q ss_pred CCCEEEEE---EcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC------CCcEEEEEcCCc
Q 001176 596 TRNRFLAA---GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSDG 661 (1132)
Q Consensus 596 ~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~ 661 (1132)
.|++++.+ |..|.+.++|..-.....+- ...+ ...+.+.|.|.|+++++++. |..-++|+....
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhhhhhcc-Cccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 99998885 46789999998743322221 1122 24678999999999999876 445566766543
No 247
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.2e-10 Score=134.26 Aligned_cols=218 Identities=10% Similarity=0.059 Sum_probs=150.1
Q ss_pred CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc---CCCcEEEEECCCCeEEEEecCCCCCeEEEEee
Q 001176 427 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503 (1132)
Q Consensus 427 g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~---~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~ 503 (1132)
..|.+||.++... + .+..|...+.+.+|+|||+ .|+..+ .+..|.+||+.+++. ..+..+.+.+...+|+
T Consensus 182 ~~l~~~d~dg~~~-~---~lt~~~~~v~~p~wSpDG~--~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQDGANV-R---YLTDGSSLVLTPRFSPNRQ--EITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFS 254 (435)
T ss_pred eEEEEECCCCCCc-E---EEecCCCCeEeeEECCCCC--EEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEEC
Confidence 4788888866432 2 3556888999999999999 455443 346899999988875 3455566677788898
Q ss_pred ccCCccEE-EEEecCCe--EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeee
Q 001176 504 HKESIQFI-FSTAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 580 (1132)
Q Consensus 504 ~~~~~~~l-~s~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1132)
|++ ..| ++.+.++. |.+||+.++.. ..+..+.......+|+|||+.|+..+. .++...|+++|+.+++.....
T Consensus 255 PDG--~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~-~~g~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 255 PDG--RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESD-RSGSPQLYVMNADGSNPRRIS 330 (435)
T ss_pred CCC--CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEEC-CCCCCeEEEEECCCCCeEEee
Confidence 755 544 56666665 66778776544 344545556678999999999987763 344567999998776554333
Q ss_pred ccccCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC------C
Q 001176 581 SGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD------N 651 (1132)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g 651 (1132)
. ... .+....|+|+|+.++..+.+ ..|.+||+.++.. ..+... . .+....|+|||+.|+..+.+ .
T Consensus 331 ~-~~~-~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~-~--~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 331 F-GGG-RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG-F--LVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred c-CCC-cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC-C--CCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 2 222 45668899999999886533 3688899866543 333321 1 46788999999998876553 2
Q ss_pred cEEEEEcCCc
Q 001176 652 GIKILANSDG 661 (1132)
Q Consensus 652 ~i~iw~~~~~ 661 (1132)
.+.++++..+
T Consensus 405 ~L~~~dl~g~ 414 (435)
T PRK05137 405 KLYTVDLTGR 414 (435)
T ss_pred eEEEEECCCC
Confidence 5777777554
No 248
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=4.1e-11 Score=127.56 Aligned_cols=201 Identities=18% Similarity=0.196 Sum_probs=138.1
Q ss_pred cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCC-CCCeEEEEeeccCCccEEEEEecCCeEEEEEcC
Q 001176 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526 (1132)
Q Consensus 448 ~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~ 526 (1132)
.|...-+.|..+|||++ +++||...-.|++||+.+-... |..| ...+..+.+. +.|-..++.-..|.+|.+-..-
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe-ccchhhheEeecCceeeehhhc
Confidence 46677889999999997 7899999999999998876543 3333 2333333222 1122344555566666554211
Q ss_pred CCCceEEecCCCCeEEEEEEcC-CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEc
Q 001176 527 YLGSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 605 (1132)
Q Consensus 527 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 605 (1132)
.......+.. .-..++++. ...+++.++ ...|+-+++..|+.+..|..... .++++..++....|++|+.
T Consensus 125 G~hy~~RIP~---~GRDm~y~~~scDly~~gs-----g~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 125 GRHYRTRIPK---FGRDMKYHKPSCDLYLVGS-----GSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTE 195 (703)
T ss_pred CeeeeeecCc---CCccccccCCCccEEEeec-----CcceEEEEccccccccccccccc-cceeeeecCccceEEeccc
Confidence 1101111111 123444443 334444443 23499999999999998887665 8999999999999999999
Q ss_pred CCeEEEEECCCCeeEEEEeCCC---------CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 606 EFQIKFWDMDNMNMLTTVDADG---------GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 606 dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+|.|.+||.+....+..+.... ....|+++.|+.+|-.+++|+.+|.+.|||+.+.
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 9999999999887776665322 2345899999999999999999999999999776
No 249
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.40 E-value=4.9e-10 Score=118.18 Aligned_cols=360 Identities=13% Similarity=0.156 Sum_probs=222.4
Q ss_pred EEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEE
Q 001176 521 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF 600 (1132)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1132)
.+|...+......+....-++..+++||.|.+|++... ..|.+|+...+..+..+... .|..+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~-----~~V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHA-----AGVECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhc-----cceEEccccchhheeeeecC---CceecccCccccee
Confidence 34544444444444445668889999999999998753 34999998877655555432 58889999999999
Q ss_pred EEEEcCC---------------eEEEEECCCCeeEEEEeCCCCCCCcc-eEEEcCCCCEEEEEeCCCcEEEEEcCCccee
Q 001176 601 LAAGDEF---------------QIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGSLLAVTTSDNGIKILANSDGVRL 664 (1132)
Q Consensus 601 ~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 664 (1132)
.+-+..+ .+.+||..++..+..+.......... -+.|+-+..++|-. ....+.++++ ++.-.
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~ 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc
Confidence 9876443 49999999999998887654421233 67888888777655 3347888886 33110
Q ss_pred eeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCce
Q 001176 665 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 744 (1132)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 744 (1132)
.+... .+
T Consensus 165 -----~~p~~--------------~l------------------------------------------------------ 171 (561)
T COG5354 165 -----EHPFK--------------NL------------------------------------------------------ 171 (561)
T ss_pred -----cCchh--------------hc------------------------------------------------------
Confidence 11000 00
Q ss_pred eeeecCCCCCCCcceEEecCCcccccceEEEEEecCCc--eEEe-----ecccceeEEEeeccccCCCCCcccccccccc
Q 001176 745 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL--SLLA-----LASNAVHKLWKWQRTERNPSGKATANVAPQL 817 (1132)
Q Consensus 745 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~-----~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l 817 (1132)
....|....++|.|. .|+. .+..+.+++|.+.....
T Consensus 172 -----------------------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~-------------- 214 (561)
T COG5354 172 -----------------------RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV-------------- 214 (561)
T ss_pred -----------------------cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe--------------
Confidence 011233333333321 1111 12344555554431110
Q ss_pred ccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEe------------eCCeEEEEECCCCeEEEEeeCCCCCeEEEE
Q 001176 818 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA------------SGGKVSLFNMMTFKVMTMFMSPPPAATFLA 885 (1132)
Q Consensus 818 ~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~------------sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 885 (1132)
+....+. .-.-..+.|.+.|+++..- +...+.|+++....+ .....-.++|...+
T Consensus 215 -------l~tk~lf-----k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~ 281 (561)
T COG5354 215 -------LVTKNLF-----KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFT 281 (561)
T ss_pred -------eeeeeeE-----eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeee
Confidence 0000000 1111345566666655432 124588888874333 33335678999999
Q ss_pred EeCCCCCeEEE--EeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCC---CcEEEEECCCccccccee
Q 001176 886 FHPQDNNIIAI--GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---AQLCMWSIDKWEKLKSRF 960 (1132)
Q Consensus 886 ~sp~~~~~las--g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D---~~i~iwd~~~~~~~~~~~ 960 (1132)
|.| .++.+++ |-.+-.+.++|+... +...+ ....=..+.|||.+++++.++-| |.+.+||....-. +
T Consensus 282 W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~----~ 353 (561)
T COG5354 282 WEP-LSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK----V 353 (561)
T ss_pred ecc-cCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceE----E
Confidence 999 4444433 457788999998765 33332 33444668999999999998876 6799999987543 2
Q ss_pred eeCCCCCCCCCCCceeEEECCCCcEEEEE-------eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001176 961 IQAPAGRQSPLVGETKVQFHNDQTHLLVV-------HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1033 (1132)
Q Consensus 961 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-------~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~ 1033 (1132)
+....+ ...+-+.|+|||+++.+. .|..+.+||+.+.... ..+.+.|.|.|++.-+.+
T Consensus 354 ~~~~~~-----~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----------el~~~~W~p~~~~~ttsS 418 (561)
T COG5354 354 AGAFNG-----LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----------ELTNITWDPSGQYVTTSS 418 (561)
T ss_pred EEEeec-----CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------hhhhccccCCcccceeec
Confidence 323333 234667899999998883 2678999999665532 456678888888877777
Q ss_pred cCC
Q 001176 1034 CDG 1036 (1132)
Q Consensus 1034 ~dg 1036 (1132)
.+.
T Consensus 419 s~~ 421 (561)
T COG5354 419 SCP 421 (561)
T ss_pred cCC
Confidence 655
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=1.5e-09 Score=110.92 Aligned_cols=278 Identities=11% Similarity=0.114 Sum_probs=183.2
Q ss_pred cCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeeccc---ceeEEEeeccccCCCCCcccccccccc
Q 001176 741 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGKATANVAPQL 817 (1132)
Q Consensus 741 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~l 817 (1132)
+..|.+|++.+........ .+ .......+-++++|+++.|.++..+ |.+..|.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~--~~--v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------- 71 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL--QL--VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------- 71 (346)
T ss_pred CCceEEEEEeCcccccchh--hh--ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence 5789999998432211111 11 2255678899999999998887654 66666655
Q ss_pred ccCCCcCccc---ccCCCCCCCCCCeeEEEEeeCCCEEEEee--CCeEEEEECCC-CeEEEE--eeCCCCC---------
Q 001176 818 WQPPSGTLMT---NDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMT-FKVMTM--FMSPPPA--------- 880 (1132)
Q Consensus 818 ~~~~~~~~~~---~~~~~~~h~~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~-~~~~~~--~~~~~~~--------- 880 (1132)
|.++|.+.. ..+. ..+-+-++++++|++|+++. .|.|.++-++. |.+... ...|.+.
T Consensus 72 -D~~~G~Lt~ln~~~~~-----g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~ 145 (346)
T COG2706 72 -DPDDGRLTFLNRQTLP-----GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESP 145 (346)
T ss_pred -cCCCCeEEEeeccccC-----CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCC
Confidence 334443221 1122 22337899999999999998 68999999965 433222 2224444
Q ss_pred -eEEEEEeCCCCCeEEEEeC-CCcEEEEEcccceeeeeec---cccCCeeEEEEcCCCCEEEEEc-CCCcEEEEECCCc-
Q 001176 881 -ATFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVKTKLK---GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDKW- 953 (1132)
Q Consensus 881 -i~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~~-~D~~i~iwd~~~~- 953 (1132)
+.+..|.| ++++|++.+- --.|.+|++..|++...-. .....-..|.|+|++++..... -+++|.+|..+..
T Consensus 146 h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~ 224 (346)
T COG2706 146 HVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV 224 (346)
T ss_pred ccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC
Confidence 78899999 8888887642 2379999999876543211 2344568899999999877665 5899999999874
Q ss_pred -ccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeC--CeEEEEeC--CCCceeecCCCCCCCCCeEEEEEccCCCE
Q 001176 954 -EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--SQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLL 1028 (1132)
Q Consensus 954 -~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d--~~v~vwd~--~~~~~~~~~~~~~h~~~i~~i~~s~dg~~ 1028 (1132)
+......+..++..-.......++.+++||++|.+++. ..|.+|.+ .+..+........+...-+...|+++|++
T Consensus 225 g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~ 304 (346)
T COG2706 225 GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRF 304 (346)
T ss_pred ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCE
Confidence 32222222222222222356678999999999999853 46888888 44444443333333455678899999999
Q ss_pred EEEEecCC-cEEEEeC--CCcce
Q 001176 1029 VYAGFCDG-AIGVFDA--ETLRF 1048 (1132)
Q Consensus 1029 las~~~dg-~i~vwd~--~~~~~ 1048 (1132)
|+++.+++ .|.+|.. ++|++
T Consensus 305 Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 305 LIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred EEEEccCCCcEEEEEEcCCCceE
Confidence 99888765 4777765 45554
No 251
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=1.7e-09 Score=110.37 Aligned_cols=256 Identities=14% Similarity=0.189 Sum_probs=173.8
Q ss_pred CCCeeEEEEeeCCCEEEEee----CCeEEEEECCC--CeE--EEEeeCCCCCeEEEEEeCCCCCeEEEEeCC-CcEEEEE
Q 001176 837 EESAACIALSKNDSYVMSAS----GGKVSLFNMMT--FKV--MTMFMSPPPAATFLAFHPQDNNIIAIGMED-SSVQIYN 907 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s----dg~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~sp~~~~~lasg~~d-g~v~iwd 907 (1132)
....+-++++|++++|.++. +|.|..|.++. |++ +........+-+.+++++ ++++|+++... |.|.++-
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEEE
Confidence 66778899999999998885 36688877764 543 222233334458899999 89999988754 7899999
Q ss_pred ccc-ceeeee--eccccCC----------eeEEEEcCCCCEEEEEc--CCCcEEEEECCCcccccceeeeCCCCCCCCCC
Q 001176 908 VRV-DEVKTK--LKGHQNR----------ITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 972 (1132)
Q Consensus 908 ~~~-~~~~~~--l~~h~~~----------V~~l~~spdg~~l~s~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 972 (1132)
+.. |.+... +..|.+. +-...+.|++++|++.. .| .|.+|++..+.......... .+..
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v-----~~G~ 191 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEV-----KPGA 191 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCcccccccccc-----CCCC
Confidence 865 432221 2235444 77889999999999875 45 49999999776444333333 2336
Q ss_pred CceeEEECCCCcEEEEE--eCCeEEEEeCCC--CceeecCCC------CCCCCCeEEEEEccCCCEEEEEec-CCcEEEE
Q 001176 973 GETKVQFHNDQTHLLVV--HESQISVYDSKL--ECSRSWSPK------DALPAPISSAIYSCDGLLVYAGFC-DGAIGVF 1041 (1132)
Q Consensus 973 ~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~--~~~~~~~~~------~~h~~~i~~i~~s~dg~~las~~~-dg~i~vw 1041 (1132)
+...++|+|++++..+. -+++|.+|..+. ..+..+... -.-.....+|.+++||++|.++.. ...|.+|
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 78999999999998884 379999999833 333322111 111456778999999999988753 3468888
Q ss_pred eCCCcc-eecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCC-CcEEEEecCCCcccccCCC
Q 001176 1042 DAETLR-FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEPSDAELKWGGTP 1108 (1132)
Q Consensus 1042 d~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~D-g~i~vW~~~~~~~~~~~~~ 1108 (1132)
.+.... .+..+. ....+...+..+.+.| ++++|++++.| ..|.++.+....+.+....
T Consensus 272 ~V~~~~g~L~~~~--------~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 272 SVDPDGGKLELVG--------ITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred EEcCCCCEEEEEE--------EeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence 775432 222211 1224455678899999 77888777766 4899998877665555443
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.37 E-value=2.6e-10 Score=113.99 Aligned_cols=190 Identities=14% Similarity=0.274 Sum_probs=123.0
Q ss_pred cCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-----EEEEecCCC------------CCeEEEEeeccCCccEEE
Q 001176 450 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHE------------APVYSVCPHHKESIQFIF 512 (1132)
Q Consensus 450 ~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~h~------------~~v~~i~~~~~~~~~~l~ 512 (1132)
..-|.++.|...|. +|+||..+|.|.++.-.... ....++.|. ..|..+.|.+.++...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45689999999999 89999999999999643221 223344443 457888999888888999
Q ss_pred EEecCCeEEEEEcCCCCceEE-----ecCCCCeEEEEEE---cCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc
Q 001176 513 STAIDGKIKAWLYDYLGSRVD-----YDAPGNWCTMMAY---SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 584 (1132)
Q Consensus 513 s~s~dg~i~~wd~~~~~~~~~-----~~~~~~~v~~~~~---s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1132)
..+.|.+|++|.+........ .......++++.. .+....+ . ..+.+.+...+
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~v-e------------------a~prRv~aNaH 163 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEV-E------------------ASPRRVYANAH 163 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccccee-e------------------eeeeeeccccc
Confidence 999999999998876544330 1111112222221 1111000 0 12233443333
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-eeEE--EEeCCC---CCCCcceEEEcC-CCCEEEEEeCCCcEEEEE
Q 001176 585 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLT--TVDADG---GLPASPRLRFNK-EGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~--~~~~~~---~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~ 657 (1132)
.--|++++++.|...++++ .|=.|.+|++.-. +... .++.+. -..-|++..|+| .-++++..+..|+|++-|
T Consensus 164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 3368999999999988887 4778999998632 2222 222211 012478889999 556788888899999999
Q ss_pred cCCc
Q 001176 658 NSDG 661 (1132)
Q Consensus 658 ~~~~ 661 (1132)
++..
T Consensus 243 mR~~ 246 (433)
T KOG1354|consen 243 MRQS 246 (433)
T ss_pred chhh
Confidence 8644
No 253
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=8.5e-11 Score=119.87 Aligned_cols=247 Identities=10% Similarity=0.128 Sum_probs=180.5
Q ss_pred CCcCeEEEEEcCCCC--eEEEEeCCCeEEEEEecCCCceeee---eeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 404 AAISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNPTGELRQH---LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 404 h~~~V~~v~~spdg~--~las~~~dg~i~iwd~~~~~~~~~~---~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
....|..++|.-|++ .+...+.+..+..+.+......... .......++|..++.. |+ .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 445788888877654 4444446667777777665543321 1223345677777664 44 4889999999999
Q ss_pred EECCCCe----EEEEecCCCCCeEEEEeeccCCccEEEEEecC--CeEEEEEcCCCCceEEecCCC---------CeEEE
Q 001176 479 WDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDYLGSRVDYDAPG---------NWCTM 543 (1132)
Q Consensus 479 wd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d--g~i~~wd~~~~~~~~~~~~~~---------~~v~~ 543 (1132)
|....+. .+..+..+ ..+..+.-++.. -.++++|+.. ..+.+||+...+++..-..-. -+++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~-p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTD-PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCC-CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9987433 22333322 345555444332 2677889999 889999999875555332211 16788
Q ss_pred EEEcCC--CCEEEEEecCCCCCCeEEEEeCCCCc-eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeE
Q 001176 544 MAYSAD--GTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 620 (1132)
Q Consensus 544 ~~~s~~--~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1132)
+.|.+. ...+++++. -+++++||.+.++ ++..|..... ++.++...|+++++++|..-|.+..+|.++++..
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceee
Confidence 999887 788999874 7789999998764 6666766555 8999999999999999999999999999999888
Q ss_pred EE-EeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcce
Q 001176 621 TT-VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVR 663 (1132)
Q Consensus 621 ~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 663 (1132)
.. +.+.. +.|.++..+|.++++++++-|..|||+|+.+.+.
T Consensus 283 g~~~kg~t--Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 283 GCGLKGIT--GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ccccCCcc--CCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 76 55543 4899999999999999999999999999998633
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=1.3e-08 Score=112.99 Aligned_cols=231 Identities=12% Similarity=0.165 Sum_probs=147.1
Q ss_pred EEEEeCC----CeEEEEEecCC-CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC----CCcEEEEECCCC--eE--
Q 001176 420 LGVAFSK----HIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----DKMIKVWDVVAG--RK-- 486 (1132)
Q Consensus 420 las~~~d----g~i~iwd~~~~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~----dg~v~vwd~~~~--~~-- 486 (1132)
+++|+.. +.|.+|+++.. ..+...... .-......++++|+++ +|++... ++.|..|++... ++
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~--~LY~~~e~~~~~g~v~~~~i~~~~g~L~~ 78 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGR--RLYVVNEGSGDSGGVSSYRIDPDTGTLTL 78 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSS--EEEEEETTSSTTTEEEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCC--EEEEEEccccCCCCEEEEEECCCcceeEE
Confidence 3455554 68999988332 333322222 2344567899999999 5665554 679999988763 43
Q ss_pred EEEecCCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEcCCCCceEEe---c-----------CCCCeEEEEEEcCCCC
Q 001176 487 QYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGSRVDY---D-----------APGNWCTMMAYSADGT 551 (1132)
Q Consensus 487 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~---~-----------~~~~~v~~~~~s~~~~ 551 (1132)
+.+..........+++++++ .+|+++. .+|.|.++++.....+... . .......++.++|+|+
T Consensus 79 ~~~~~~~g~~p~~i~~~~~g--~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 79 LNSVPSGGSSPCHIAVDPDG--RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp EEEEEESSSCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred eeeeccCCCCcEEEEEecCC--CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 33333234445667776654 6776665 5999999999875443321 1 1234678999999999
Q ss_pred EEEEEecCCCCCCeEEEEeCCCCc--e--eeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC--CCe--eEEE
Q 001176 552 RLFSCGTSKEGESHLVEWNESEGA--I--KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMD--NMN--MLTT 622 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~~--~~~~ 622 (1132)
++++... +...|++|++.... + ...+........+.+.|+|+++++++.. .++.|.++++. ++. .+..
T Consensus 157 ~v~v~dl---G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 157 FVYVPDL---GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp EEEEEET---TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEec---CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 9998764 45579999987654 3 2334444444688899999999988866 67889999988 443 2333
Q ss_pred EeCC----CCCCCcceEEEcCCCCEEEEEeC-CCcEEEEEc
Q 001176 623 VDAD----GGLPASPRLRFNKEGSLLAVTTS-DNGIKILAN 658 (1132)
Q Consensus 623 ~~~~----~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~ 658 (1132)
+... ........++++|||++|+++.. ++.|.+|++
T Consensus 234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 3221 11124568999999999887764 556777776
No 255
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.35 E-value=6.6e-11 Score=118.21 Aligned_cols=111 Identities=19% Similarity=0.308 Sum_probs=91.5
Q ss_pred CCCeeEEEEeeCCCEEEEee---CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCC---CcEEEEEccc
Q 001176 837 EESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRV 910 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d---g~v~iwd~~~ 910 (1132)
.++|.+++|+|+|+.+|+.. +..|.+||++ ++.+..+. ...+..+.|+| +|++|++|+.+ |.|.+||+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 55799999999999887653 5789999996 66666664 56788999999 89999988744 6799999998
Q ss_pred ceeeeeeccccCCeeEEEEcCCCCEEEEEcC------CCcEEEEECCCc
Q 001176 911 DEVKTKLKGHQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDKW 953 (1132)
Q Consensus 911 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~------D~~i~iwd~~~~ 953 (1132)
.+.+.... |. .++.++|||||+++++++. |..++||+....
T Consensus 135 ~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 135 KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 88887765 33 4789999999999999874 788999999753
No 256
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.35 E-value=9e-10 Score=116.25 Aligned_cols=314 Identities=10% Similarity=0.071 Sum_probs=205.5
Q ss_pred CcceeeecCCCCCCceecc------CCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCC---------------cEE
Q 001176 311 QSDEVSFAGVAHTPNVYSQ------DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG---------------DIS 369 (1132)
Q Consensus 311 ~v~~~~~~~~g~~~~~~~~------d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg---------------~v~ 369 (1132)
++..+.+||.|.+++.... +......+..+.| ..|..+.|||.++ +|.+-+..+ .+.
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~-~~V~~~~fSP~~k-YL~tw~~~pi~~pe~e~sp~~~~n~~~ 111 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRH-PDVKYLDFSPNEK-YLVTWSREPIIEPEIEISPFTSKNNVF 111 (561)
T ss_pred chhheeecCcchheehhhccceEEccccchhheeeeec-CCceecccCcccc-eeeeeccCCccChhhccCCccccCcee
Confidence 5667899999998876533 2233334444444 4799999999999 587765433 488
Q ss_pred EEecCCCccccccceeeeecccccccccccccCCCCcC--eE-EEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeee
Q 001176 370 LWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS--VN-RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI 446 (1132)
Q Consensus 370 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~-~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l 446 (1132)
+||..+|..+.... +-..+ .+ -+.|+-|.+++|=- ....++|+++...-.......+
T Consensus 112 vwd~~sg~iv~sf~-------------------~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~l 171 (561)
T COG5354 112 VWDIASGMIVFSFN-------------------GISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNL 171 (561)
T ss_pred EEeccCceeEeecc-------------------ccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhc
Confidence 99998887765421 11112 33 57899998887755 3346999997322222222222
Q ss_pred ecccCCEEEEEEecCCCcEEEEE-----EcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEE-------
Q 001176 447 DAHVGGVNDIAFAHPNKQLCIVT-----CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST------- 514 (1132)
Q Consensus 447 ~~h~~~v~~v~~s~d~~~~~l~s-----~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~------- 514 (1132)
. ...|....|+|.+..-.|+. .+.++++++|.+..++.+.+-.-....-..+.|.+.+ .+|+.-
T Consensus 172 r--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g--~~ll~l~~t~~ks 247 (561)
T COG5354 172 R--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG--KYLLVLVMTHTKS 247 (561)
T ss_pred c--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC--ceEEEEEEEeeec
Confidence 2 35688999999865423443 4678899999998777665433222333445565544 333221
Q ss_pred ----ecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEE
Q 001176 515 ----AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV 590 (1132)
Q Consensus 515 ----s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 590 (1132)
-....+.++++......... ...++|...+|+|.++.+++++. -....+.++|++.. ....+.. + .-+.
T Consensus 248 nKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g--~~pa~~s~~~lr~N-l~~~~Pe--~-~rNT 320 (561)
T COG5354 248 NKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISG--YMPASVSVFDLRGN-LRFYFPE--Q-KRNT 320 (561)
T ss_pred ccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEec--ccccceeecccccc-eEEecCC--c-cccc
Confidence 12355778887744444433 55779999999999999887763 24667889998855 3333322 2 2345
Q ss_pred EEEeCCCCEEEEEEc---CCeEEEEECCCCeeEE-EEeCCCCCCCcceEEEcCCCCEEEEEeC------CCcEEEEEcCC
Q 001176 591 VQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSD 660 (1132)
Q Consensus 591 ~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~~ 660 (1132)
+.|+|.+++++.++- .|.+-+||..+..... .+.+. ...-+.|+||++++.+... |..+.+|++..
T Consensus 321 ~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 321 IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred ccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC----CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 779999999999874 4789999988755444 55543 3456789999999887753 77899999865
Q ss_pred c
Q 001176 661 G 661 (1132)
Q Consensus 661 ~ 661 (1132)
.
T Consensus 397 ~ 397 (561)
T COG5354 397 A 397 (561)
T ss_pred c
Confidence 4
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=3.7e-10 Score=128.37 Aligned_cols=226 Identities=10% Similarity=0.047 Sum_probs=141.0
Q ss_pred CCCCeeEEEEccCCCe--EEEEEcCCC--cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC
Q 001176 342 QGSNVMSMDFHPQQQT--ILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~--lla~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
....+.+-+|||||+. ++++...+| .|.+.++.+++... +....+.....+|||||
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPRK 242 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCCC
Confidence 5566788899999975 333554443 57777887775432 22234455678999999
Q ss_pred CeEEEEeC-CC----eEEEEEecCCC--ceeeeeeeecccCCEEEEEEecCCCcEEEEE-EcCCCcEEEE--ECCC-CeE
Q 001176 418 LMLGVAFS-KH----IVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT-CGDDKMIKVW--DVVA-GRK 486 (1132)
Q Consensus 418 ~~las~~~-dg----~i~iwd~~~~~--~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s-~~~dg~v~vw--d~~~-~~~ 486 (1132)
+.||..+. +| .+.+|++.++. .... ...++.+.....+|+|||+. |+. ...+|...+| ++.. +..
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~--Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR--LVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE--EEEEECCCCCceEEEEECcccccc
Confidence 99887653 22 34457776532 2221 12222334567899999994 444 3456655555 4432 333
Q ss_pred EEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 487 QYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 487 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
...+..+...+....|+|++ +.|+..+.+ ..|.+||+.+++.... ......+....|+|||+.|+..... .+.
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~-~g~ 394 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGN-SNE 394 (428)
T ss_pred eEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECC-CCC
Confidence 45555555667788898765 667665443 4689999987765443 3333456789999999998865532 346
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEeCCC
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 597 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 597 (1132)
..|+++|+..++........ . .+...+|+|-.
T Consensus 395 ~~L~~vdl~~g~~~~Lt~~~-g-~~~~p~Ws~~~ 426 (428)
T PRK01029 395 SELYLISLITKKTRKIVIGS-G-EKRFPSWGAFP 426 (428)
T ss_pred ceEEEEECCCCCEEEeecCC-C-cccCceecCCC
Confidence 77999999887755444322 1 45567777643
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=9e-10 Score=125.24 Aligned_cols=226 Identities=11% Similarity=0.071 Sum_probs=141.1
Q ss_pred CCCcCeEEEEEcCCCCeEE---EEeCCC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC----C
Q 001176 403 DAAISVNRCVWGPDGLMLG---VAFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----D 473 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~la---s~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~----d 473 (1132)
.....+.+-+|||||+.++ +...+| .|.+.++.+++... +....+.....+|+|||+. ++++... |
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~~d 256 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL-LAFISDRYGNPD 256 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 3455667889999998532 343343 57788888775433 2233445567899999995 2333322 3
Q ss_pred CcEEEEECCCC---eEEEEecCCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEc--CC-CCceEEecCCCCeEEEEEE
Q 001176 474 KMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLY--DY-LGSRVDYDAPGNWCTMMAY 546 (1132)
Q Consensus 474 g~v~vwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~~wd~--~~-~~~~~~~~~~~~~v~~~~~ 546 (1132)
..+.+|++..+ +......++.......+|+|++ ..|+..+ .+|...+|.+ .. +.....+......+....|
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w 334 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW 334 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE
Confidence 34455777653 3333332333344667887754 6666554 5676566644 32 2334445445556778999
Q ss_pred cCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE---cCCeEEEEECCCCeeEEEE
Q 001176 547 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLTTV 623 (1132)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~ 623 (1132)
||||+.|+..+.. ++...|++||+.+++....... .. .+....|+|||+.|+... ....|+++|+.+++.....
T Consensus 335 SPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~~-~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 335 SPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-PE-NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-CC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 9999999877642 2456799999998876543332 22 456789999999887644 2467899999887765544
Q ss_pred eCCCCCCCcceEEEcCCC
Q 001176 624 DADGGLPASPRLRFNKEG 641 (1132)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~ 641 (1132)
... ..+...+|+|-.
T Consensus 412 ~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 412 IGS---GEKRFPSWGAFP 426 (428)
T ss_pred cCC---CcccCceecCCC
Confidence 322 245677888743
No 259
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.32 E-value=1.6e-10 Score=115.47 Aligned_cols=162 Identities=18% Similarity=0.327 Sum_probs=114.8
Q ss_pred EEEEEcCCCCeEEEEeC----------CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 409 NRCVWGPDGLMLGVAFS----------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 409 ~~v~~spdg~~las~~~----------dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
..+.|+|+|++|+.-.. -+...+|.++..........+. ..++|.+++|+|+|+.+.+++|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46889999998776432 2346667664433222222232 345799999999999755666777889999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
||++ ++.+..+. ...++.+.|+|.+ ++|++++.+ |.|.+||.++.+.+.... ...++.++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 9986 77777764 5678899998865 888888754 679999999666555443 335789999999999998
Q ss_pred EecC--CCCCCeEEEEeCCCCceeee
Q 001176 556 CGTS--KEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 556 ~~~~--~~~~~~i~~wd~~~~~~~~~ 579 (1132)
+... ...++.++||+.. |+.+..
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEe
Confidence 8742 1235668999975 555544
No 260
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.32 E-value=1.1e-08 Score=113.65 Aligned_cols=247 Identities=15% Similarity=0.182 Sum_probs=163.0
Q ss_pred CcCeEEEEEcCCCCeEEEEeC----CCeEEEEEecCC-CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 405 AISVNRCVWGPDGLMLGVAFS----KHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 405 ~~~V~~v~~spdg~~las~~~----dg~i~iwd~~~~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
......++++|++++|.+... ++.|..|++... ..+...............++++|+++. ++++...+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence 345667999999999988866 579999999875 444443344333445678999999994 34444569999999
Q ss_pred ECCC-CeEEEE---ec----------CCCCCeEEEEeeccCCccEEEEE-ecCCeEEEEEcCCCCc-e---EEe-cCCCC
Q 001176 480 DVVA-GRKQYT---FE----------GHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGS-R---VDY-DAPGN 539 (1132)
Q Consensus 480 d~~~-~~~~~~---~~----------~h~~~v~~i~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~-~---~~~-~~~~~ 539 (1132)
++.. |..... +. .......++.++|++ +++++. -....|.+|+++.... + ..+ ...+.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9987 544322 21 123456788887754 655554 3456899999987662 2 122 23455
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC--CCce--eeeeccc----cC-CceEEEEEeCCCCEEEEEE-cCCeE
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAI--KRTYSGF----RK-RSLGVVQFDTTRNRFLAAG-DEFQI 609 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~--~~~~~~~----~~-~~v~~~~~~~~~~~l~~~~-~dg~i 609 (1132)
..+.++|+|+++++++... ..+.|.++++. ++.. +...... .. .....+.++|||++|+++. ..+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 7889999999999988764 57789999887 4432 2222211 11 1467799999999988865 67889
Q ss_pred EEEECC--CCe--eEEEEeCCCCCCCcceEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 001176 610 KFWDMD--NMN--MLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANS 659 (1132)
Q Consensus 610 ~iwd~~--~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~ 659 (1132)
.+|+++ +++ .+..+...+. ....++++|+|++|+++.. ++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999984 233 3334433222 4689999999999998874 6789998764
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=6.6e-10 Score=127.54 Aligned_cols=222 Identities=13% Similarity=0.068 Sum_probs=141.0
Q ss_pred CCCCcCeEEEEEcCCCCeEEEEeCC---CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc--E
Q 001176 402 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--I 476 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~--v 476 (1132)
..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++. |
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~I 288 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPEI 288 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeEE
Confidence 3466788999999999999876543 358889998875422 2222233457899999995 3344566664 7
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe-cCCe--EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEE
Q 001176 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 553 (1132)
Q Consensus 477 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 553 (1132)
++||+.+++. ..+..+.......+|+|++ ..|+..+ .++. |.++|+.+++.. .+..........+|+|||++|
T Consensus 289 y~~dl~tg~~-~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 289 YVVDIATKAL-TRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEE
Confidence 8889887764 4555565566778888754 5565544 3444 555666655433 232233334567899999999
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEc-CC--eEEEEECCCCeeEEEEeCCCCCC
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
+..+.. .+...|.++|+.+++........ ......|+|+|+.++..+. ++ .+++++. ++.....+..+.+
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g-- 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG-- 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC--
Confidence 887642 23446788898887653322221 1223579999998877553 33 4777787 4555555554322
Q ss_pred CcceEEEcC
Q 001176 631 ASPRLRFNK 639 (1132)
Q Consensus 631 ~v~~~~~s~ 639 (1132)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 466777876
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1e-09 Score=126.91 Aligned_cols=222 Identities=12% Similarity=0.079 Sum_probs=142.5
Q ss_pred CCCCcCeEEEEEcCCCCeEEEEeCC---CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC--cE
Q 001176 402 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MI 476 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--~v 476 (1132)
..+...+...+|||||+.|+..+.+ ..|.+|++.+++... +....+.+...+|+|||+. ++++.+.++ .|
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~I 269 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEI 269 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCceE
Confidence 3467789999999999999877643 369999998875432 2233345567899999995 333555555 68
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe-cCC--eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEE
Q 001176 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 553 (1132)
Q Consensus 477 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 553 (1132)
++||+.+++. ..+..+........|+|++ ..++..+ .+| .|.++|+.+++... +...........|+|||+++
T Consensus 270 y~~d~~~~~~-~~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 270 YVMDLASRQL-SRVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEECCCCCe-EEcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 8889988765 3455566566677887754 5555444 344 46677776655332 22223334467899999999
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeeEEEEeCCCCCC
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
+..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..+++++.... ....+..+. .
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~--g 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQ--G 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCC--C
Confidence 877642 23446899999887653322221 12245899999998876633 35777777543 333444332 2
Q ss_pred CcceEEEcC
Q 001176 631 ASPRLRFNK 639 (1132)
Q Consensus 631 ~v~~~~~s~ 639 (1132)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 456667776
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=4.5e-10 Score=129.88 Aligned_cols=237 Identities=13% Similarity=0.087 Sum_probs=145.8
Q ss_pred eeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCC--CcEEEEecCCCccccccceeeeecccccccccccccCC
Q 001176 326 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 326 ~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
++..|...........+...+...+|||||++++++...+ ..|.+||+.+++... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 3333433333333445778899999999999766655433 368899998876432 222
Q ss_pred CCcCeEEEEEcCCCCeEEE-EeCCC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC--cEEE
Q 001176 404 AAISVNRCVWGPDGLMLGV-AFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKV 478 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las-~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--~v~v 478 (1132)
..+.+...+|||||+.|+. .+.+| .|.+||+.++... .+..+........|+|||+. ++++...++ .|++
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYK 315 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEE
Confidence 3344557899999998875 44444 6888899886533 24445556677899999995 233333333 6778
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEec-CC--eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
+|+.+++... +...........|+|++ ..++..+. ++ .|.+||+.++..... .. ........|+|||+.++.
T Consensus 316 ~d~~~g~~~~-lt~~~~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~-~~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 316 VNVNGGRAER-VTFVGNYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSVRIL-TD-TSLDESPSVAPNGTMLIY 390 (430)
T ss_pred EECCCCCEEE-eecCCCCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCEEEc-cC-CCCCCCceECCCCCEEEE
Confidence 8888776433 22122223345677654 66666554 33 578889887654332 22 222235689999999987
Q ss_pred EecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC
Q 001176 556 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
.+.. .+...+++++.. +.....+..... .+...+|+|
T Consensus 391 ~~~~-~g~~~l~~~~~~-g~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 391 ATRQ-QGRGVLMLVSIN-GRVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEec-CCceEEEEEECC-CCceEECcCCCC-CcCCCccCC
Confidence 7642 235568888875 333344443322 455566665
No 264
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.30 E-value=4.7e-09 Score=112.55 Aligned_cols=239 Identities=11% Similarity=0.050 Sum_probs=151.1
Q ss_pred EeeCCCEEEEeeC-----------CeEEEEECCCCeEEEEeeCCCC-------CeEEEEEeCCCCCeEEEEe-C-CCcEE
Q 001176 845 LSKNDSYVMSASG-----------GKVSLFNMMTFKVMTMFMSPPP-------AATFLAFHPQDNNIIAIGM-E-DSSVQ 904 (1132)
Q Consensus 845 ~s~dg~~la~~sd-----------g~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~sp~~~~~lasg~-~-dg~v~ 904 (1132)
+||||+.++++.. +.|.+||..+++.+..+..... ....++++| +|++|.+.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 9999998877643 6799999999999988875332 234789999 888887665 3 68999
Q ss_pred EEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECC-CC
Q 001176 905 IYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN-DQ 983 (1132)
Q Consensus 905 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg 983 (1132)
+.|+.+++.+..+.--. ...-...+. ...++- +.||......+.+.............+...+.. ..-.|++ ||
T Consensus 132 VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~~~-~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~--~rP~~~~~dg 206 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFFMH-CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLI--NHPAYSNKSG 206 (352)
T ss_pred EEECCCCcEEEEEeCCC-CcEEEEecC-CccEEE-eecCceEEEEecCCCceEEeeeeeecCCccccc--cCCceEcCCC
Confidence 99999999988876422 111122222 222222 234444443333222111111111111000000 0114455 89
Q ss_pred cEEEEEeCCeEEEEeCCCC------ceeecCCC----CCCCCCeEEEEEccCCCEEEEEe----------cCCcEEEEeC
Q 001176 984 THLLVVHESQISVYDSKLE------CSRSWSPK----DALPAPISSAIYSCDGLLVYAGF----------CDGAIGVFDA 1043 (1132)
Q Consensus 984 ~~l~~~~d~~v~vwd~~~~------~~~~~~~~----~~h~~~i~~i~~s~dg~~las~~----------~dg~i~vwd~ 1043 (1132)
+++.++..|.|.+.|+.+. ....+... .-..+.+.-+++++|++++++.. ..+.|.++|.
T Consensus 207 ~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 207 RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 9999988899999996221 11111111 01233445599999999988743 2257999999
Q ss_pred CCcceecccCCCccccccccCCCCCCcEEEEeCCCCCC-eEEEEe-CCCcEEEEecCCCcc
Q 001176 1044 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPSDAEL 1102 (1132)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~-~Dg~i~vW~~~~~~~ 1102 (1132)
.+++.+.++... ..+..++++| |++ +|++.. .++.|.+.|+.+++.
T Consensus 287 ~t~kvi~~i~vG------------~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 287 KTGKRLRKIELG------------HEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CCCeEEEEEeCC------------CceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 999999887522 4677899999 666 777655 688999999999873
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.29 E-value=2e-08 Score=107.86 Aligned_cols=203 Identities=15% Similarity=0.113 Sum_probs=121.4
Q ss_pred eEEEEeeCCCEEEEee---CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc-ceee-e
Q 001176 841 ACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVK-T 915 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~-~ 915 (1132)
..++++|||+++++.. +..|.+.|+.+++.+.++.... ...-...++ +..+ +-+.||......+.+ |+.. .
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEe
Confidence 3567788888777664 5778888888888877776533 111122222 2221 123344433333221 1111 1
Q ss_pred ---eeccccCCee-EEEEcC-CCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCC----CCCCCceeEEECCCCcEE
Q 001176 916 ---KLKGHQNRIT-GLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ----SPLVGETKVQFHNDQTHL 986 (1132)
Q Consensus 916 ---~l~~h~~~V~-~l~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~dg~~l 986 (1132)
.+.+-..++. .-.|++ ||+++..... |+|.+-|+...+.............. -.......++++++|+++
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 1111001100 003455 8887776666 99999997654432222222111100 011344459999999999
Q ss_pred EEEe---C--------CeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEeCCCcceeccc
Q 001176 987 LVVH---E--------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAGF-CDGAIGVFDAETLRFRCRI 1052 (1132)
Q Consensus 987 ~~~~---d--------~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~-~las~~-~dg~i~vwd~~~~~~~~~~ 1052 (1132)
.+.. . +.|.++|. +.+.+..+.. ...+..++|+|||+ +|++.+ .++.|.++|+.+++.+..+
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 8832 1 57999999 6677776654 45899999999999 888766 5788999999999998887
No 266
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=4.1e-10 Score=129.21 Aligned_cols=223 Identities=13% Similarity=0.101 Sum_probs=137.3
Q ss_pred ecCCCCeeEEEEccCCCeEEEEEcCCC--cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC
Q 001176 340 LNQGSNVMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 340 l~h~~~V~~~~~spdg~~lla~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
..+...+.+..|||||++++.+...++ .|.+||+.+++... +....+.....+|||||
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wSPDG 273 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFSPDG 273 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeECCCC
Confidence 346778999999999997665544443 58888988776432 11122234468999999
Q ss_pred CeEEE-EeCCCe--EEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC--cEEEEECCCCeEEEEecC
Q 001176 418 LMLGV-AFSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEG 492 (1132)
Q Consensus 418 ~~las-~~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~ 492 (1132)
+.|+. .+.+|. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|+++|+.+++... +..
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~ 347 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR-LTF 347 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-Eec
Confidence 98875 455664 777788776532 24445556778899999995 333443344 56777887776533 222
Q ss_pred CCCCeEEEEeeccCCccEEEEEec-CCe--EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 569 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 569 (1132)
........+|+|++ +.|+..+. ++. |.++|+.++.... +... .......|+|||+.|+..... ++...++++
T Consensus 348 ~g~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~~l~~~ 422 (448)
T PRK04792 348 EGEQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQVLAAV 422 (448)
T ss_pred CCCCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCceEEEEE
Confidence 22223446777754 56655544 443 5556766654432 2221 122345899999998876642 345568888
Q ss_pred eCCCCceeeeeccccCCceEEEEEeC
Q 001176 570 NESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
+. +|.....+..... .+...+|+|
T Consensus 423 ~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 423 SI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EC-CCCceEECcCCCC-CcCCCccCC
Confidence 87 4665566654433 456677776
No 267
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=1.2e-09 Score=126.53 Aligned_cols=210 Identities=13% Similarity=0.055 Sum_probs=139.4
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCC---CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC--c
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--M 475 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--~ 475 (1132)
+..+...+.+.+|||||++||.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 33466678999999999999987654 479999999875432 3345566778999999985 334555444 5
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEec-CC--eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001176 476 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 552 (1132)
Q Consensus 476 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 552 (1132)
|++||+.++.. ..+..+........|++ ++..|+.++. ++ .|.++|+.+++. ..+..+......+.|+|+|++
T Consensus 260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQL-TRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCE-EECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence 88999887764 34444555555667876 4466665554 33 577777765543 344445566778899999999
Q ss_pred EEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeeEEEEe
Q 001176 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 624 (1132)
++.+..+. +...|.+||+.++.... +.... ......|+|++++|+..+.++ .+++.+.. ++....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGERV-LTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 98876532 24479999998765432 22221 234468999999988876543 45555544 44444444
No 268
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=5.5e-10 Score=111.74 Aligned_cols=263 Identities=12% Similarity=0.176 Sum_probs=174.9
Q ss_pred cCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeee---cccccccccccccCCCCcCeEEEEEcCCC
Q 001176 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWD---ISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
...+-|.++.|...|. +||||..+|.|.++.-..... . .++.+. ..++...+... -.-...|..+.|.+++
T Consensus 23 teadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~--ey~~~t~fqshepEFDYLkS--leieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-G--EYNFQTEFQSHEPEFDYLKS--LEIEEKINKIRWLDDG 96 (433)
T ss_pred chhcceeeEEeecccc-eEeecCCCCeEEEeecccccc-c--ceeeeeeeeccCcccchhhh--hhhhhhhhhceecCCC
Confidence 3456899999999999 699999999999997543321 0 111110 00000000000 0134578899999976
Q ss_pred C--eEEEEeCCCeEEEEEecCCCcee--------------------------------eee-eeecccCCEEEEEEecCC
Q 001176 418 L--MLGVAFSKHIVHLYTYNPTGELR--------------------------------QHL-EIDAHVGGVNDIAFAHPN 462 (1132)
Q Consensus 418 ~--~las~~~dg~i~iwd~~~~~~~~--------------------------------~~~-~l~~h~~~v~~v~~s~d~ 462 (1132)
. .+...+.|.+|++|.+....... +.. --.+|.--|+++.++.|+
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 5 55666789999999986432110 001 123677789999999999
Q ss_pred CcEEEEEEcCCCcEEEEECCCCeE---EEEecCC-----CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc----
Q 001176 463 KQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGH-----EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---- 530 (1132)
Q Consensus 463 ~~~~l~s~~~dg~v~vwd~~~~~~---~~~~~~h-----~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---- 530 (1132)
. .++++ .|=.|.+|+++--.. +..++.+ ..-|++..|+|... ..++-.+..|+|++.|++....
T Consensus 177 E--t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 177 E--TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred c--eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcch
Confidence 8 56665 488999999874322 2223332 24577888988755 6888888999999999984221
Q ss_pred --eEE----------ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC-CCceeeeeccccCC-----------
Q 001176 531 --RVD----------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKR----------- 586 (1132)
Q Consensus 531 --~~~----------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~----------- 586 (1132)
... +..--..|..+.|+.+|+++++-. --+|.+||+. ..+++.+++.|..-
T Consensus 253 sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD 327 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND 327 (433)
T ss_pred hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence 111 111123688999999999999863 4679999994 56677776655321
Q ss_pred c---eEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 587 S---LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 587 ~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
. -..++|+.++.++++|+....+++++...|.
T Consensus 328 ~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 328 AIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred chhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 1 2347899999999999999999999965443
No 269
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.25 E-value=1.2e-09 Score=126.53 Aligned_cols=223 Identities=13% Similarity=0.094 Sum_probs=142.0
Q ss_pred eeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCC--CcEEEEecCCCccccccceeeeecccccccccccccCC
Q 001176 326 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 326 ~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
++..|.........+.+...+.+.+|||||++++++...+ ..|++||+.+++... +..
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~ 231 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VAS 231 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eec
Confidence 3344433333333344677899999999999655444322 579999998875432 223
Q ss_pred CCcCeEEEEEcCCCCeEEEE-eCCC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc-CCC--cEE
Q 001176 404 AAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK--MIK 477 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~dg--~v~ 477 (1132)
+.+.+.+++|+|||+.|+.. +.++ .|.+||+.++... .+..+........|+|||+ .|+..+ .++ .|+
T Consensus 232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~--~l~~~s~~~g~~~iy 305 (417)
T TIGR02800 232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGK--SIAFTSDRGGSPQIY 305 (417)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCC--EEEEEECCCCCceEE
Confidence 45567789999999987654 4444 5888898876532 2334555556789999999 454443 333 688
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 478 vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
++|+.+++. ..+..+...+....|+|++ .+++.++.++ .|.+||+.++... .+.. .......+|+|||++|+
T Consensus 306 ~~d~~~~~~-~~l~~~~~~~~~~~~spdg--~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 306 MMDADGGEV-RRLTFRGGYNASPSWSPDG--DLIAFVHREGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAPNGRMIL 380 (417)
T ss_pred EEECCCCCE-EEeecCCCCccCeEECCCC--CEEEEEEccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECCCCCEEE
Confidence 888877764 3444455566777887754 7787777765 7888998774433 2222 22334568999999998
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
...... +...+++.+.. ++....+.
T Consensus 381 ~~~~~~-~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 381 YATTRG-GRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEeCC-CcEEEEEEECC-CceeeECC
Confidence 877532 33456666643 44444443
No 270
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.24 E-value=1.1e-09 Score=107.47 Aligned_cols=254 Identities=14% Similarity=0.101 Sum_probs=167.3
Q ss_pred CCCCeeEEEEcc---CCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCC
Q 001176 342 QGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 418 (1132)
Q Consensus 342 h~~~V~~~~~sp---dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 418 (1132)
.++.+..+.|.- +|...++-+-.+|.|.++.......... ++ ++.. ..-....-.++.|++-+.
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~ls~--~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------GLSS--KKISVVEALSLDISTSGT 134 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------ccch--hhhhheeeeEEEeeccCc
Confidence 456778888873 4543566667788999887654432211 00 0000 000111345788999999
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC-CCeEEEE-ecCCCCC
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYT-FEGHEAP 496 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~-~~~~~~~-~~~h~~~ 496 (1132)
.++++..+|.+.+-+.... .+....++++|.-+++...|+....+ ++++|+.|+.+..||++ .++.+.. .+-|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 9999999999985544332 23444468899999999999977766 89999999999999998 4445443 4568999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCC--CEEEEEecCCCCCCeEEEEeCCCC
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--TRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
|.+|.-+|. ...++++|+.|-.|++||.++..+...-..-.+.|..+.++|.- +.|++|-.++ ..+-+...+
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEeccc
Confidence 999987765 44899999999999999999877766656667899999999854 3455554311 444544432
Q ss_pred --c---eeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEE-EEECCCC
Q 001176 575 --A---IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIK-FWDMDNM 617 (1132)
Q Consensus 575 --~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-iwd~~~~ 617 (1132)
+ .....+.|.. -.....|......+++++ .|+.++ +|-..++
T Consensus 287 ~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 2 2233444443 333444543335677755 566644 6654443
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=7e-10 Score=119.81 Aligned_cols=193 Identities=13% Similarity=0.159 Sum_probs=154.9
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEe------c------------CCCcEEEEEEcCCCcE
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA------H------------PNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s------~------------d~~~~~l~s~~~dg~v 476 (1132)
|-+.++|....||.+++|+...++....+.....-.+..++..|. | .+...+++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456789999999999999999887544333222234445555552 1 1112378889999999
Q ss_pred EEEECCCCeEEEEec--CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 477 KVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 477 ~vwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
.++++..|+....+. .|.+.|.++.++..- ..|.+++.|+.+..|+................+.+++.+|||..++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 999999999988886 499999999876543 7899999999999999998888888888888999999999999999
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCC-----CCEEEEE-EcCCeEEEEECCC
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-----RNRFLAA-GDEFQIKFWDMDN 616 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~~dg~i~iwd~~~ 616 (1132)
+++ ++|.+||+++++.+..|.||.. +|++++|..+ |.+++++ ..+..+.+|-+..
T Consensus 161 ~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 885 4699999999999999999988 9999999877 6777764 4566677886554
No 272
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.2e-09 Score=114.22 Aligned_cols=326 Identities=12% Similarity=0.121 Sum_probs=210.6
Q ss_pred ccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCC
Q 001176 728 SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSG 807 (1132)
Q Consensus 728 ~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 807 (1132)
..+|.|.++++-....|.+|--.+ -..++++. ...|.-+.|||+.++|++-+..-...-|+
T Consensus 217 ~wSP~GTYL~t~Hk~GI~lWGG~~---f~r~~RF~------Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~---------- 277 (698)
T KOG2314|consen 217 RWSPKGTYLVTFHKQGIALWGGES---FDRIQRFY------HPGVQFIDFSPNEKYLVTYSPEPIIVEED---------- 277 (698)
T ss_pred EecCCceEEEEEeccceeeecCcc---HHHHHhcc------CCCceeeecCCccceEEEecCCccccCcc----------
Confidence 345566778888888888886553 22233332 24588899999999999987643332222
Q ss_pred ccccccccccccCCCcCcccccCCCCCCCCCCe-eEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEE
Q 001176 808 KATANVAPQLWQPPSGTLMTNDINESKPTEESA-ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAF 886 (1132)
Q Consensus 808 ~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v-~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 886 (1132)
......+.+||+.+|.+.+...... . ...+ .-+.||.|++|+|-....+|.||+..+..++-.-.--...|....|
T Consensus 278 -d~e~~~l~IWDI~tG~lkrsF~~~~-~-~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~Fsw 354 (698)
T KOG2314|consen 278 -DNEGQQLIIWDIATGLLKRSFPVIK-S-PYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSW 354 (698)
T ss_pred -cCCCceEEEEEccccchhcceeccC-C-CccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCccc
Confidence 0111235677888887766543310 1 2223 3468999999999888899999998876554333333567889999
Q ss_pred eCCCCCeEEEEeCC-----CcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEE----------cCCCcEEEEECC
Q 001176 887 HPQDNNIIAIGMED-----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS----------GADAQLCMWSID 951 (1132)
Q Consensus 887 sp~~~~~lasg~~d-----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~----------~~D~~i~iwd~~ 951 (1132)
+| .+.+||.-+.. ..+.+-.+.+++.+++-.-|.-.=..|-|-.+|.+|+.- |.=..+.|+.+.
T Consensus 355 sP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir 433 (698)
T KOG2314|consen 355 SP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR 433 (698)
T ss_pred CC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence 99 89999875433 357888888888887766665544567788888888742 122235566666
Q ss_pred CcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE--Ee--CCeEEEEeCC--CCceeecCCCCCCCCCeEEEEEccC
Q 001176 952 KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV--VH--ESQISVYDSK--LECSRSWSPKDALPAPISSAIYSCD 1025 (1132)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~--d~~v~vwd~~--~~~~~~~~~~~~h~~~i~~i~~s~d 1025 (1132)
..+.... ...+. ..+...+|-|.|..+++ ++ ..++.+|.+. ........... ....+.+.|||.
T Consensus 434 eKdIpve--~velk------e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPk 503 (698)
T KOG2314|consen 434 EKDIPVE--VVELK------ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPK 503 (698)
T ss_pred ccCCCce--eeecc------hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCC
Confidence 5432111 11111 46788999999999888 33 3568899883 22222222222 456788999999
Q ss_pred CCEEEEE---ecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeC------CCcEEEEe
Q 001176 1026 GLLVYAG---FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMS------DGAVHVVE 1096 (1132)
Q Consensus 1026 g~~las~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------Dg~i~vW~ 1096 (1132)
|++++.+ |..|.+.++|..-......-.+ .| -..+.+-|.| .|++++++++ |...++|+
T Consensus 504 G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~----------eh-~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~t 571 (698)
T KOG2314|consen 504 GRFVVVAALVSRRGDLEFYDTDYADLKDTASP----------EH-FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFT 571 (698)
T ss_pred CcEEEEEEecccccceEEEecchhhhhhccCc----------cc-cccccceECC-CCCEEEEeeehhhhccccceEEEE
Confidence 9998775 4578899999985332211111 22 3345789999 8899999875 45566777
Q ss_pred cC
Q 001176 1097 PS 1098 (1132)
Q Consensus 1097 ~~ 1098 (1132)
+.
T Consensus 572 fq 573 (698)
T KOG2314|consen 572 FQ 573 (698)
T ss_pred ee
Confidence 63
No 273
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.18 E-value=2.5e-10 Score=110.25 Aligned_cols=169 Identities=17% Similarity=0.232 Sum_probs=125.3
Q ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHHcCCCcc---------HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHH
Q 001176 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIF 73 (1132)
Q Consensus 3 ~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~ 73 (1132)
..+.|+.|||+.||-..||.++|+.+.+|+|+..+ -.++|.+|..|+-++|+..+.++....-+. ...+.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~-n~~l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT-NRELF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc-chhHH
Confidence 35689999999999999999999999999999872 457899999999999999999985443222 33489
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhc---ccCccchhhhcccCCchhHHHHHHHHHHhh
Q 001176 74 FEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT---LDNFRQNEQLSKYGDTKSARNIMLVELKKL 150 (1132)
Q Consensus 74 ~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~ 150 (1132)
|.+.+|+++||+..+..++|+.|++.++.|+...++..++.|...|. .+..+..+.... -....|.++...+.+.
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l--~~~s~R~kvA~~vN~a 180 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAEL--LSQSLRQKVASEVNSA 180 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHH--HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998777777777776554 332222221110 1344577888777776
Q ss_pred cccCcccccccCCCCCcchHHHHHHHHHHHHH
Q 001176 151 IEANPLFRDKLSFPSFKSSRLRTLINQSLNWQ 182 (1132)
Q Consensus 151 ~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q 182 (1132)
|-...- . --..+|..||+.-+..|
T Consensus 181 iL~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 181 ILASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHhc---c-----cccchHHHHHHHHHHHH
Confidence 632110 0 01447888886655555
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.16 E-value=2.4e-08 Score=113.51 Aligned_cols=305 Identities=11% Similarity=0.044 Sum_probs=180.7
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCce
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 588 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 588 (1132)
..+++++.+|.+..+|..+++...............+ .++..++.++. ++.++.+|..+|+.+....... .+
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~--~~ 137 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTE----KGEVIALDAEDGKELWRAKLSS--EV 137 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcC----CCEEEEEECCCCcEeeeeccCc--ee
Confidence 6788888999999999988887776655443222222 24566666653 6789999999999887665432 22
Q ss_pred EE-EEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCC---cceEEEcCCCCEEEEEeCCCcEEEEEcCCccee
Q 001176 589 GV-VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA---SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL 664 (1132)
Q Consensus 589 ~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 664 (1132)
.+ ... .+..++.++.++.++.||..+++.+........... ..+... .+..++.+..+|.+..+|..+|...
T Consensus 138 ~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEe
Confidence 21 112 245777788899999999999998877654322100 011111 1346778888899999999888432
Q ss_pred eeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCce
Q 001176 665 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 744 (1132)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 744 (1132)
...-........ ..-
T Consensus 214 W~~~~~~~~g~~-----------------------------------------------------------------~~~ 228 (377)
T TIGR03300 214 WEQRVALPKGRT-----------------------------------------------------------------ELE 228 (377)
T ss_pred eeeccccCCCCC-----------------------------------------------------------------chh
Confidence 211000000000 000
Q ss_pred eeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcC
Q 001176 745 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 824 (1132)
Q Consensus 745 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 824 (1132)
++.+.. ....+ .+..+++++.+|.+..||....+ .+|....
T Consensus 229 ~~~~~~----------------------~~p~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~-- 269 (377)
T TIGR03300 229 RLVDVD----------------------GDPVV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDA-- 269 (377)
T ss_pred hhhccC----------------------CccEE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeecc--
Confidence 000000 00011 13346666677777777653221 1232210
Q ss_pred cccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCC-CCeEEEEEeCCCCCeEEEEeCCCc
Q 001176 825 LMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSS 902 (1132)
Q Consensus 825 ~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~lasg~~dg~ 902 (1132)
.. ....+ .++..+++++ +|.+..+|..+++.+....... ....+... .+..|++++.+|.
T Consensus 270 ------------~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~ 331 (377)
T TIGR03300 270 ------------SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGY 331 (377)
T ss_pred ------------CC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCE
Confidence 00 11111 2455666665 8999999999998876653222 22233333 2357888999999
Q ss_pred EEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEE
Q 001176 903 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948 (1132)
Q Consensus 903 v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iw 948 (1132)
|+++|..+|+.+.+++.+...+..--...+ ..|+.++.||.|+.+
T Consensus 332 l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 332 LHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 999999999999988876654433222224 357788899988765
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.13 E-value=8.5e-08 Score=108.98 Aligned_cols=184 Identities=11% Similarity=0.035 Sum_probs=118.2
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEE
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 545 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1132)
.++.++.++.|..+|..+|+.+..+.-.......... ++..++.++.++.+..+|..+++.+..............
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5788888999999999999988766543322222222 336788889999999999998888776554332211112
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCce-----EEEEEeCCCCEEEEEEcCCeEEEEECCCCeeE
Q 001176 546 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 620 (1132)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1132)
. .+..++.+. .++.++.||.++|+.+..+..... .+ .+.... +..++.+..++.+..+|..+|+.+
T Consensus 143 v--~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 143 V--ANGLVVVRT----NDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred E--ECCEEEEEC----CCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 2 234555554 377899999999998877654322 11 111122 246777888899999999999877
Q ss_pred EEEeCCCCC--CC---cceEEEcC--CCCEEEEEeCCCcEEEEEcCCcc
Q 001176 621 TTVDADGGL--PA---SPRLRFNK--EGSLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 621 ~~~~~~~~~--~~---v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
......... .. ...+.-+| .+..+++++.+|.+..||..+++
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR 262 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc
Confidence 654321100 00 00111111 35578888889999999998883
No 276
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.2e-08 Score=110.36 Aligned_cols=190 Identities=18% Similarity=0.283 Sum_probs=147.7
Q ss_pred eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc--------------------CC
Q 001176 357 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG--------------------PD 416 (1132)
Q Consensus 357 ~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--------------------pd 416 (1132)
.++|....||.++||+...++.... |. |.. .-++..++..|. -|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e--~~---------p~~-----~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQE--FA---------PIA-----SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeee--ec---------cch-----hccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 3688889999999999998875432 10 110 122233333332 23
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCC
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
-..++-|...|.|.+|++..++.-... .-..|.+.|.++.++.+-. .|.|++.|+.+..|+..+++.++.+++....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 446778888999999999998754432 3357999999999998887 8999999999999999999999999999999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCC-----CCEEEEEecCCCCCCeEEEEeC
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-----GTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
+.+++++|+ +..+++++ +.|++||+++.+....+.+|.++|.+++|..+ |.++++... .+.-+.+|-.
T Consensus 147 ~~sl~is~D--~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~~w~v 219 (541)
T KOG4547|consen 147 VSSLCISPD--GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGITVWVV 219 (541)
T ss_pred cceEEEcCC--CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---cccceeEEEE
Confidence 999999875 57888776 68999999999999999999999999999877 778776542 2344666655
Q ss_pred C
Q 001176 572 S 572 (1132)
Q Consensus 572 ~ 572 (1132)
.
T Consensus 220 ~ 220 (541)
T KOG4547|consen 220 E 220 (541)
T ss_pred E
Confidence 4
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.12 E-value=4.2e-09 Score=105.71 Aligned_cols=214 Identities=15% Similarity=0.234 Sum_probs=140.2
Q ss_pred eeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEEC-CCCeEEEEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001176 445 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-VAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 522 (1132)
Q Consensus 445 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~-~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~ 522 (1132)
.++||.+.|++...-|-.. -+++.+.|.+++||-- ..++.-..+. ....+++++.+.... ..|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEecceEEE
Confidence 5778999999888888777 5899999999999943 3344333332 134567777766544 78999999999988
Q ss_pred EEcC----CCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe-CCCCceeeeeccccCCceEEEEEeCCC
Q 001176 523 WLYD----YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN-ESEGAIKRTYSGFRKRSLGVVQFDTTR 597 (1132)
Q Consensus 523 wd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 597 (1132)
+.+. ..........|...+..+.|+-...++++++. |..+ .|. .+.+..+..+.-.. ...+..+.-.
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~-~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~- 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQF-AWHCTESGNRLGGYNFET--PASALQFDAL- 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccce-EEEeeccCCcccceEeec--cCCCCceeeE-
Confidence 8553 33444566778889999999999999999875 2223 333 23333332221110 0111111111
Q ss_pred CEEEEEEcCCeEEEEEC--CCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecccccc
Q 001176 598 NRFLAAGDEFQIKFWDM--DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAM 673 (1132)
Q Consensus 598 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 673 (1132)
+.+.|...|.|.+-.+ ..-.++.++.+| ...+.+++|.+...+|++|..|..+.+||+.-.......+.+|..
T Consensus 167 -~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 167 -YAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND 241 (404)
T ss_pred -EEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh
Confidence 4444555566555443 345566666666 458999999999999999999999999998766444444444443
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=8.7e-08 Score=120.24 Aligned_cols=257 Identities=14% Similarity=0.186 Sum_probs=162.7
Q ss_pred eEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEEeeC--C------------CCCeEEEEEeCCCCCeEEEE-eCCCcE
Q 001176 841 ACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS--P------------PPAATFLAFHPQDNNIIAIG-MEDSSV 903 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~--~------------~~~i~~l~~sp~~~~~lasg-~~dg~v 903 (1132)
..+++++++..+++++ ++.|++||... +.+..+.+ . -.....+++++ +++.|.++ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 5688988655454444 68899999864 44444332 1 12357899999 66655444 455789
Q ss_pred EEEEcccceeeeeeccc-----------------cCCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCcccccce---eee
Q 001176 904 QIYNVRVDEVKTKLKGH-----------------QNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSR---FIQ 962 (1132)
Q Consensus 904 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~---~~~ 962 (1132)
+++|..++. +.++.+- -..-++++|+| ++..+++.+.++.|++||..++...... ...
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999987765 3333110 11246799999 5677788888899999999876432100 000
Q ss_pred CCCCCC---CCCCCceeEEECCCCcEEEEE--eCCeEEEEeCCCCceeecCC------------C--C-----CCCCCeE
Q 001176 963 APAGRQ---SPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLECSRSWSP------------K--D-----ALPAPIS 1018 (1132)
Q Consensus 963 ~~~~~~---~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~~~~~~~~------------~--~-----~h~~~i~ 1018 (1132)
...+.. ........++++|+|+.|+++ .++.|++||+.......... + . .....-.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 011110 011345789999999866663 57899999984322111100 0 0 0011245
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCc--cccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 001176 1019 SAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA--YIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1096 (1132)
Q Consensus 1019 ~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~ 1096 (1132)
.++++++|.++++-+.++.|++||..++.......... +.-.....+.-..+..+++++ +|+++++.+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 89999999988888899999999999876653322110 000001123345688999999 778999999999999999
Q ss_pred cCCCc
Q 001176 1097 PSDAE 1101 (1132)
Q Consensus 1097 ~~~~~ 1101 (1132)
+.+++
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 99876
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=1.4e-09 Score=130.38 Aligned_cols=201 Identities=14% Similarity=0.236 Sum_probs=162.8
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
++.+-..|.++.=+|...+.++|+.||.|++|....++.+.+..+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 3445668889999999999999999999999999998887766543 33 7899999999999 678888899999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe---cCCeEEEEEcCCCCc-eEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
+. .++....+.|........|-. ..+++++ .++.+.+||..-... -.....|.+.++++++.|..+.|++|
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 65 666777888998888888754 4566653 578899999654332 22347899999999999999999999
Q ss_pred ecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeC
Q 001176 557 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1132)
|. +|.|++||++..++.++++. +. ...++++|+..|.++||++.....+..++.
T Consensus 2355 gr----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GR----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CC----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 85 77899999998887776654 33 467899999999999999998877777653
No 280
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.02 E-value=4.3e-08 Score=96.61 Aligned_cols=249 Identities=13% Similarity=0.079 Sum_probs=159.1
Q ss_pred CCcCeEEEEEcC---CCC-eEEEEeCCCeEEEEEecCCCceeeeeeeecccC---CEEEEEEecCCCcEEEEEEcCCCcE
Q 001176 404 AAISVNRCVWGP---DGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 404 h~~~V~~v~~sp---dg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~---~v~~v~~s~d~~~~~l~s~~~dg~v 476 (1132)
....+..+.|+. +|. .++-+-.+|.|.++.............+..-.- ...++.|++.+. -++++-.+|.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~ 145 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSI 145 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcE
Confidence 345677777764 555 566677889999998765443322222222111 245778899888 58888889999
Q ss_pred EEEECCCCeEEE--EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eEE-ecCCCCeEEEEEEcC-CCC
Q 001176 477 KVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVD-YDAPGNWCTMMAYSA-DGT 551 (1132)
Q Consensus 477 ~vwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~-~~~~~~~v~~~~~s~-~~~ 551 (1132)
.+-+........ .++.|+.+.+...|+...+ +++.+|+.|+.+..||++..+. +.. ...|...|.++.-+| .+.
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~ 224 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPT 224 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeecccCCC-ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCc
Confidence 976655555443 7899999999999986654 8999999999999999995443 222 455777899998886 567
Q ss_pred EEEEEecCCCCCCeEEEEeCC-CCceeeeeccccCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCeeE--EEEeCC-
Q 001176 552 RLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMNML--TTVDAD- 626 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~- 626 (1132)
++++|+. |-.|++||.+ -++++..-. ..+.|..+..+|.-. .++.++.-+-.+|-+...+... ..+..+
T Consensus 225 ~I~TGsY----De~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~ 298 (339)
T KOG0280|consen 225 YIATGSY----DECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDK 298 (339)
T ss_pred eEEEecc----ccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccc
Confidence 8899887 5679999998 466654433 334788899988643 2333333344566665543222 111111
Q ss_pred CCCCCcceEEEcCCCCEEEEEeC-CCcEE-EEEcCCc
Q 001176 627 GGLPASPRLRFNKEGSLLAVTTS-DNGIK-ILANSDG 661 (1132)
Q Consensus 627 ~~~~~v~~~~~s~~~~~l~~~~~-dg~i~-iw~~~~~ 661 (1132)
.+.+-+..-.|......|++++. |..++ +|-..++
T Consensus 299 ~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 299 IHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 11112333334333356777654 55544 6655444
No 281
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=3.2e-09 Score=116.48 Aligned_cols=283 Identities=16% Similarity=0.219 Sum_probs=193.6
Q ss_pred CCcceeeecCCCCCCceeccC-------CcccceEEeecCC--CCeeEEEEccCCC-eEEEEEcCCCcEEEEecCCCccc
Q 001176 310 GQSDEVSFAGVAHTPNVYSQD-------DLTKTVVRTLNQG--SNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERL 379 (1132)
Q Consensus 310 ~~v~~~~~~~~g~~~~~~~~d-------~~~~~~~~~l~h~--~~V~~~~~spdg~-~lla~g~~dg~v~iwd~~~~~~~ 379 (1132)
.++..++++|-|+.++.++.- +.|..+.+-|.|- -.|-.+.|||.-. .+-++........||++......
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~ 104 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN 104 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCcc
Confidence 467788899999888876543 3577777777754 4688899998532 24455555677788988654322
Q ss_pred cccceeeeecccccccccccccCCCCcCeEEEEEcCC-CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEE
Q 001176 380 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF 458 (1132)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~ 458 (1132)
. ..-++.||+..|+.+.|.|. ...+|+++.|..+..||+.+..... .....-......|+|
T Consensus 105 a----------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~--ys~~~w~s~asqVkw 166 (1081)
T KOG0309|consen 105 A----------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF--YSTSSWRSAASQVKW 166 (1081)
T ss_pred c----------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce--eeeecccccCceeee
Confidence 1 11237899999999999995 5689999999999999999865322 223333446678999
Q ss_pred ecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE-ecC
Q 001176 459 AHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDA 536 (1132)
Q Consensus 459 s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~ 536 (1132)
+.... .+...+..+.|.+||.+.| .++..+++|...|+++.|..... ..+.+.+.||+|++||.+....... ...
T Consensus 167 nyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vt 243 (1081)
T KOG0309|consen 167 NYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVT 243 (1081)
T ss_pred cccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceecc
Confidence 87666 4555667889999999875 46788999999999998865433 5688999999999999876554432 222
Q ss_pred CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE---------EeCCC-CceeeeeccccCCceEEEEEeCC----------
Q 001176 537 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVE---------WNESE-GAIKRTYSGFRKRSLGVVQFDTT---------- 596 (1132)
Q Consensus 537 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~---------wd~~~-~~~~~~~~~~~~~~v~~~~~~~~---------- 596 (1132)
...+|..-.+.|-|+-...--. .|+..+.+ |+..+ .+++.+|.||.+ .|....|-..
T Consensus 244 t~~piw~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~r 320 (1081)
T KOG0309|consen 244 TNFPIWRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSR 320 (1081)
T ss_pred ccCcceeccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCcc
Confidence 3446666677775543332211 11223333 33332 457889999987 4443333221
Q ss_pred CCEEEEEEcCCeEEEEECCC
Q 001176 597 RNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 597 ~~~l~~~~~dg~i~iwd~~~ 616 (1132)
.-.|++-+.|..+++|-+.+
T Consensus 321 dfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 321 DFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ceeEEEeecCCceEeeeccH
Confidence 23689999999999998764
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=2.5e-09 Score=112.99 Aligned_cols=246 Identities=14% Similarity=0.185 Sum_probs=172.4
Q ss_pred ccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCC-c---eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC
Q 001176 398 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-E---LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 473 (1132)
Q Consensus 398 ~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~-~---~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d 473 (1132)
...+.||...|..++--.+.+-+++++.|.+|++|.++... . ..+..++..|+.+|.++.|..+-+ .++++ |
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D 803 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--D 803 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--c
Confidence 34478999999999888888889999999999999987532 1 225557889999999999999987 66655 8
Q ss_pred CcEEEEECCCCeEEEEecC--CCCCeEEEEeeccCCccEEEEE-ecCCeEEEEEcCCCCceEEe-----cCCCCeEEEEE
Q 001176 474 KMIKVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMA 545 (1132)
Q Consensus 474 g~v~vwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~~ 545 (1132)
|-|.+||.--|+++..+.. ..+.+..+...++-+..+++.+ +...+|+++|.+..+....+ .+....+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 8999999888887654321 2233333333344444566555 78999999999887755433 33445789999
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEE-EECCCCeeEEEEe
Q 001176 546 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF-WDMDNMNMLTTVD 624 (1132)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~ 624 (1132)
..+.|++++++-. .|.|.+.|.++|+.+..+..-.- ....++ .|..+.++....|..+.+ |...++......+
T Consensus 884 Va~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 884 VADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred eccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 9999999998864 77899999999998877654322 222222 344566676667888888 9887776655544
Q ss_pred CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 625 ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
.+.. +.. -.-.-|.-|+++.....+.+|.
T Consensus 958 pppe--pah--flqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 958 PPPE--PAH--FLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred CCCc--chh--hhhccCceeEEeccCcEEEEEe
Confidence 3221 100 0112366677777777778875
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.97 E-value=7e-07 Score=112.25 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=59.5
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeee-------------ccccCCeeEEEEcCCCCEEEEEcCCCcEEE
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-------------KGHQNRITGLAFSPTLNALVSSGADAQLCM 947 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-------------~~h~~~V~~l~~spdg~~l~s~~~D~~i~i 947 (1132)
...++|++ +|+++++-+.++.|++||..++...... .++-....+|+++++|+.+++-+.++.|++
T Consensus 806 P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 806 PLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 46899999 8888888889999999999877654322 112235778999999999999999999999
Q ss_pred EECCCccc
Q 001176 948 WSIDKWEK 955 (1132)
Q Consensus 948 wd~~~~~~ 955 (1132)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99998764
No 284
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.97 E-value=5.2e-09 Score=125.78 Aligned_cols=145 Identities=15% Similarity=0.316 Sum_probs=112.7
Q ss_pred cceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC
Q 001176 770 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 849 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg 849 (1132)
.+++.+.|+.+|....++..||.+.+|.... ++ .+....| ......+.|-.
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-----------------------k~---~~s~qch-nk~~~Df~Fi~-- 2302 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-----------------------KP---YTSWQCH-NKALSDFRFIG-- 2302 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccCC-----------------------cc---eeccccC-Cccccceeeee--
Confidence 6788889999999999999999999996531 00 1222236 77777777765
Q ss_pred CEEEEee----CCeEEEEECCC---CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccC
Q 001176 850 SYVMSAS----GGKVSLFNMMT---FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 922 (1132)
Q Consensus 850 ~~la~~s----dg~i~vwd~~~---~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 922 (1132)
..+++++ ++.+.+||.-- ..++. ..|.+.++++++.| ..++|++|+.+|.|++||+...++++.++.
T Consensus 2303 s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~--- 2376 (2439)
T KOG1064|consen 2303 SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA--- 2376 (2439)
T ss_pred hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh---
Confidence 6677664 47799999643 12333 77999999999999 899999999999999999998888777764
Q ss_pred CeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccc
Q 001176 923 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 956 (1132)
Q Consensus 923 ~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~ 956 (1132)
+. ...++++++..|.++||++.+...+
T Consensus 2377 ------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2377 ------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred ------hh-hhheeeccCcccceEEEEccccchh
Confidence 33 4578999999999999999986543
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=2.9e-07 Score=103.92 Aligned_cols=197 Identities=12% Similarity=0.023 Sum_probs=122.8
Q ss_pred CCeeEEEEccCCCeEEE-EEcC--CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 344 SNVMSMDFHPQQQTILL-VGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla-~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
..+....|||||+++++ +... +..|.++|+.+++... +....+.+...+|||||+.|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 37889999999986344 3332 3578899998876543 22245556678899999977
Q ss_pred EEE-eC--CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC--cEEEEECCCCeEEEEecCCCC
Q 001176 421 GVA-FS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 421 as~-~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
+.. +. +..|.++|+.++.. .. +..+........|+|||+.+++. ....+ .|.+.|+.+++..+.... ..
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~-~~---LT~~~~~d~~p~~SPDG~~I~F~-Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~ 321 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTL-TQ---ITNYPGIDVNGNFVEDDKRIVFV-SDRLGYPNIFMKKLNSGSVEQVVFH-GK 321 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcE-EE---cccCCCccCccEECCCCCEEEEE-ECCCCCceEEEEECCCCCeEeCccC-CC
Confidence 654 32 34688888877653 22 33333334456899999963333 33333 688889888776433221 11
Q ss_pred CeEEEEeeccCCccEEEEEecC---------CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001176 496 PVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 566 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1132)
. ...|+|++ ..|+..+.. ..|.+.|+.++... .+... .......|+|||+.++..... .+...+
T Consensus 322 ~--~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~-~~~~~L 394 (419)
T PRK04043 322 N--NSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYL-GNQSAL 394 (419)
T ss_pred c--CceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEcc-CCcEEE
Confidence 1 23677654 666555543 36777888766543 33322 233468899999998877643 234457
Q ss_pred EEEeCCC
Q 001176 567 VEWNESE 573 (1132)
Q Consensus 567 ~~wd~~~ 573 (1132)
.+.++..
T Consensus 395 ~~~~l~g 401 (419)
T PRK04043 395 GIIRLNY 401 (419)
T ss_pred EEEecCC
Confidence 7777754
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.89 E-value=8.1e-07 Score=88.46 Aligned_cols=189 Identities=14% Similarity=0.170 Sum_probs=119.0
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeC-------CCCCeEEEEEeCCC-----CCeEEEEeCCCcE
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS-------PPPAATFLAFHPQD-----NNIIAIGMEDSSV 903 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~-------~~~~i~~l~~sp~~-----~~~lasg~~dg~v 903 (1132)
...-+.++||||+.+||.+. .|+|++||+....+ ..+.. -...|..+.|.+-. ...|.+-..+|.+
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred CchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 34567899999999999997 89999999986443 33322 12456777776521 2245667788888
Q ss_pred EEEEcccc-----eeeeeec---cccCCeeEEEEcCCCCEEEEEcCCCc-----------EEEEECCCcccccceeeeCC
Q 001176 904 QIYNVRVD-----EVKTKLK---GHQNRITGLAFSPTLNALVSSGADAQ-----------LCMWSIDKWEKLKSRFIQAP 964 (1132)
Q Consensus 904 ~iwd~~~~-----~~~~~l~---~h~~~V~~l~~spdg~~l~s~~~D~~-----------i~iwd~~~~~~~~~~~~~~~ 964 (1132)
+=|-+..+ +....+. .+...|.++.++|..++|+.||.... +..|.+-++
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~----------- 190 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD----------- 190 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC-----------
Confidence 88876432 2333332 24668999999999888887764321 233333221
Q ss_pred CCCCCCCCCceeEEECCCCcEEEEEeCC------eEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 001176 965 AGRQSPLVGETKVQFHNDQTHLLVVHES------QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA 1037 (1132)
Q Consensus 965 ~~~~~~~~~v~~~~~s~dg~~l~~~~d~------~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~ 1037 (1132)
+|..+.+....++ +-.+|.+ +.+... .. ......|..|..||||++||+...+|.
T Consensus 191 ---------------~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~--~~~~d~i~kmSlSPdg~~La~ih~sG~ 252 (282)
T PF15492_consen 191 ---------------SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS-RQ--GQEQDGIFKMSLSPDGSLLACIHFSGS 252 (282)
T ss_pred ---------------CCcEEEccccCccccccccccceeeccceeeee-cc--ccCCCceEEEEECCCCCEEEEEEcCCe
Confidence 1222221111111 1123333 111111 11 112678999999999999999999999
Q ss_pred EEEEeCCCcceecccCCC
Q 001176 1038 IGVFDAETLRFRCRIGPS 1055 (1132)
Q Consensus 1038 i~vwd~~~~~~~~~~~~~ 1055 (1132)
|.+|++.+.+++..+..+
T Consensus 253 lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 253 LSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEEEecCcchhhcccchh
Confidence 999999999988777543
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=4.5e-07 Score=88.25 Aligned_cols=148 Identities=9% Similarity=-0.035 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE
Q 001176 408 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 408 V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~ 487 (1132)
+.++++|+|++++++.+....|..|.++..............++.=.+..|+.... .+|++..||++.|||++.-...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 88999999999999999999999999987654332223334455567889998887 7999999999999999865433
Q ss_pred E-----EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--------CeEEEEEEcCCCCEEE
Q 001176 488 Y-----TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG--------NWCTMMAYSADGTRLF 554 (1132)
Q Consensus 488 ~-----~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~ 554 (1132)
. +-..|.+.+..+.|++.+.-++|+..-.-+.+.+.|+++......+.... ..|..-.|+.++..+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 2 22358899999999987766788888888899999999877655433222 2356666666665555
Q ss_pred EEe
Q 001176 555 SCG 557 (1132)
Q Consensus 555 ~~~ 557 (1132)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 443
No 288
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.82 E-value=7.6e-08 Score=105.95 Aligned_cols=300 Identities=10% Similarity=0.146 Sum_probs=192.0
Q ss_pred cccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCC--CcCeE
Q 001176 332 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA--AISVN 409 (1132)
Q Consensus 332 ~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~ 409 (1132)
.+...-..++-.+++.++..+|.|+- +|.++.-| +.+-|+...-.... .-.| .-.|.
T Consensus 13 ~tf~kslsl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~ppr-------------------~l~h~tpw~va 71 (1081)
T KOG0309|consen 13 PTFGKSLSLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPPR-------------------WLHHITPWQVA 71 (1081)
T ss_pred CccCceeEEEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCce-------------------eeeccCcchhc
Confidence 33333445556678999999999986 66665433 45556554321110 0112 22467
Q ss_pred EEEEcCCCC--eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-E
Q 001176 410 RCVWGPDGL--MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-K 486 (1132)
Q Consensus 410 ~v~~spdg~--~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~-~ 486 (1132)
.+.|||... +-++......-.+|++.....-.....+.+|...|+.+-|.|.... .+++++.|-.+..||+++.. +
T Consensus 72 d~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p 150 (1081)
T KOG0309|consen 72 DVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRP 150 (1081)
T ss_pred ceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcc
Confidence 788888543 3444445556778998765544444568899999999999998877 89999999999999998754 4
Q ss_pred EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce-EEecCCCCeEEEEEEcCC-CCEEEEEecCCCCCC
Q 001176 487 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDAPGNWCTMMAYSAD-GTRLFSCGTSKEGES 564 (1132)
Q Consensus 487 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~ 564 (1132)
+..+..-...-..++|+... ..+.+.+..+.|++||.+.+... ..++++...|+.+.|..- ...+.+++ .|+
T Consensus 151 ~ys~~~w~s~asqVkwnyk~--p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~----~d~ 224 (1081)
T KOG0309|consen 151 FYSTSSWRSAASQVKWNYKD--PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS----NDG 224 (1081)
T ss_pred eeeeecccccCceeeecccC--cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC----CCC
Confidence 56665555667788887654 34556677788999999987654 467777778888888653 23445554 488
Q ss_pred eEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEE--EEcCCeEEEE---------ECCC-CeeEEEEeCCCCCCCc
Q 001176 565 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AGDEFQIKFW---------DMDN-MNMLTTVDADGGLPAS 632 (1132)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iw---------d~~~-~~~~~~~~~~~~~~~v 632 (1132)
+|..||................++..-.+.|-|.-.+. --.+..+.++ +..+ .+++..+.+|.. .|
T Consensus 225 tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V 302 (1081)
T KOG0309|consen 225 TVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VV 302 (1081)
T ss_pred ceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HH
Confidence 99999987543222222222225555566665533322 1112234443 3332 456777877754 45
Q ss_pred ceEEEcCCC----------CEEEEEeCCCcEEEEEcCCc
Q 001176 633 PRLRFNKEG----------SLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 633 ~~~~~s~~~----------~~l~~~~~dg~i~iw~~~~~ 661 (1132)
...-|-..+ -.|++-+.|.++++|-+.+.
T Consensus 303 ~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 303 LEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred HHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 544443322 26899999999999988653
No 289
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.78 E-value=7.6e-06 Score=93.33 Aligned_cols=188 Identities=13% Similarity=0.072 Sum_probs=115.1
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCC-Ce-E-----EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-PV-Y-----SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG 538 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~-~v-~-----~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 538 (1132)
.++.++.++.+.-+|..+|+.+.+..-... .. . .+.-.|.-.+..++.++.+|.+..+|.++++.+.......
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 577778889999999999998766542210 00 0 0000111123567788899999999999998887766543
Q ss_pred CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCce-----EEEEEeCCCCEEEEEEcCCeEEEEE
Q 001176 539 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWD 613 (1132)
Q Consensus 539 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd 613 (1132)
....+.... + ..++.+. .++.++.+|.++|+.+..+..... .+ .+... .+..++.++.+|.+..+|
T Consensus 151 ~~~ssP~v~-~-~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 151 EALSRPVVS-D-GLVLVHT----SNGMLQALNESDGAVKWTVNLDVP-SLTLRGESAPAT--AFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ceecCCEEE-C-CEEEEEC----CCCEEEEEEccCCCEeeeecCCCC-cccccCCCCCEE--ECCEEEEEcCCCEEEEEE
Confidence 322222221 3 3455443 367899999999998887764321 10 11111 134577778899999999
Q ss_pred CCCCeeEEEEeCCCCC--CC---cceEEEcC--CCCEEEEEeCCCcEEEEEcCCcc
Q 001176 614 MDNMNMLTTVDADGGL--PA---SPRLRFNK--EGSLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 614 ~~~~~~~~~~~~~~~~--~~---v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
..+|+.+......... .. ...+..+| .+..+++++.+|.+..+|..+|+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 9999877654321110 00 11111223 35567778888999999998884
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.78 E-value=5.7e-08 Score=100.36 Aligned_cols=165 Identities=16% Similarity=0.113 Sum_probs=113.5
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE-
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA- 423 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~- 423 (1132)
.++.+..+|.++ ++|++..+....++++..... ..+.++.. .-...-+++.|-.+...+..+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~------------~v~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS------------CVPKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe------------ecccCcceeeeeeccceEEEEe
Confidence 456667777887 788887777777777665443 11122110 011122344444444444444
Q ss_pred --eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe-cCCCCCeEEE
Q 001176 424 --FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYSV 500 (1132)
Q Consensus 424 --~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~~~v~~i 500 (1132)
+....+.+|....+.+. .+-||-..+++|+|+||++ +|+|+.+|..|+|-....-..+..| -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44555666666654333 3568999999999999998 8999999999999877665555554 4799999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 535 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 535 (1132)
+..++ ..|+++|.|+++++||+.+++.+..+.
T Consensus 201 sl~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTDN---YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeccC---ceeeecCCCCcEEEEecccCCcccccc
Confidence 98654 579999999999999999988775443
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.78 E-value=4.8e-06 Score=94.95 Aligned_cols=309 Identities=11% Similarity=0.049 Sum_probs=168.5
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCC--eEE-----EEEEc--CCCCEEEEEecCCCCCCeEEEEeCCCCceeee
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCT-----MMAYS--ADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~-----~~~~s--~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
..+++++.+|.+.-+|..+++.+........ ... .+.-. -++..++.++ .++.++.+|.++|+.+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~----~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS----EKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc----CCCEEEEEECCCCCCccc
Confidence 4667777777888888877776665443321 000 00001 1344555554 367899999999998877
Q ss_pred eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC--CCCEEEEEeCCCcEEEEE
Q 001176 580 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK--EGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~ 657 (1132)
...... ...+.... +..++.+..++.++.+|..+|+.+.............. .-+| .+..++.++.+|.+..+|
T Consensus 146 ~~~~~~-~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVAGE-ALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG-ESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCCCc-eecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC-CCCCEEECCEEEEEcCCCEEEEEE
Confidence 764332 11111222 45677788899999999999999887764321000000 0112 234577788899999999
Q ss_pred cCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccc
Q 001176 658 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 737 (1132)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1132)
..+|+...+ ..... |.+
T Consensus 222 ~~~G~~~W~-~~~~~----------------------------------~~~---------------------------- 238 (394)
T PRK11138 222 MEQGQLIWQ-QRISQ----------------------------------PTG---------------------------- 238 (394)
T ss_pred ccCChhhhe-ecccc----------------------------------CCC----------------------------
Confidence 988833221 11000 000
Q ss_pred ccccCce-eeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccc
Q 001176 738 AEDVDKI-KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 816 (1132)
Q Consensus 738 ~~~~~~v-~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 816 (1132)
...+ +++++. ... .+ .+..+++++.+|.+..+|..
T Consensus 239 ---~~~~~~~~~~~------------------~sP----~v--~~~~vy~~~~~g~l~ald~~----------------- 274 (394)
T PRK11138 239 ---ATEIDRLVDVD------------------TTP----VV--VGGVVYALAYNGNLVALDLR----------------- 274 (394)
T ss_pred ---ccchhcccccC------------------CCc----EE--ECCEEEEEEcCCeEEEEECC-----------------
Confidence 0000 000000 000 01 12335555556666665543
Q ss_pred cccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCC-CCeEEEEEeCCCCCeE
Q 001176 817 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNII 894 (1132)
Q Consensus 817 l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~l 894 (1132)
+|+++.....+ . ...+. .++..+..++ +|.+..+|..+++.+....... ....+..+. +..|
T Consensus 275 -----tG~~~W~~~~~----~--~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~---~g~l 338 (394)
T PRK11138 275 -----SGQIVWKREYG----S--VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY---NGYL 338 (394)
T ss_pred -----CCCEEEeecCC----C--ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE---CCEE
Confidence 22222111000 0 11112 2344555555 8999999999998765443211 122333332 2467
Q ss_pred EEEeCCCcEEEEEcccceeeeeeccccCCeeE-EEEcCCCCEEEEEcCCCcEEEEEC
Q 001176 895 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG-LAFSPTLNALVSSGADAQLCMWSI 950 (1132)
Q Consensus 895 asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~spdg~~l~s~~~D~~i~iwd~ 950 (1132)
+.++.||.|+..|..+|+.+.+.+-....+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 339 ~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 339 VVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 78899999999999999988877544333332 222 2457888899998887654
No 292
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=1.6e-06 Score=97.18 Aligned_cols=222 Identities=14% Similarity=0.176 Sum_probs=131.1
Q ss_pred EEEEcCCCCeEEEEeC----CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001176 410 RCVWGPDGLMLGVAFS----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 485 (1132)
Q Consensus 410 ~v~~spdg~~las~~~----dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~ 485 (1132)
-.+|+|...++|+++. .|.|.||- ++|+.-+ ..+..- .+++++|+|..- .|+.|-.-|.+.+|...+.+
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-~Vt~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-DVTYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-ccccce---ehhhhccChHHH--HHhhccccceeEEEecCCce
Confidence 3568888888888764 57788875 3444221 112222 356799999876 88999889999999987777
Q ss_pred EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC--C--CC--eEEEEEEcCCCCE---EEEE
Q 001176 486 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--P--GN--WCTMMAYSADGTR---LFSC 556 (1132)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~--~~--~v~~~~~s~~~~~---l~~~ 556 (1132)
.-.....|..+|..+.|++++ ..++++..-|.+.+|..+-.+....... | +. ...|...++++.- ++-+
T Consensus 93 ~htv~~th~a~i~~l~wS~~G--~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKa 170 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSHDG--TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKA 170 (1416)
T ss_pred eeeeccCCCCCceeEEecCCC--CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhh
Confidence 666666799999999998755 8999999999999998875444332111 1 11 2334445666432 1111
Q ss_pred ecCCCCCC--eEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcce
Q 001176 557 GTSKEGES--HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 634 (1132)
Q Consensus 557 ~~~~~~~~--~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1132)
.-.+|... ...-|..++.. +... -.-.|+|..++.++.+|+|+--|-. |+.....+... -..
T Consensus 171 aVtgDe~alD~~fnwk~~~a~--rs~~---------ksgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS----~vQ 234 (1416)
T KOG3617|consen 171 AVTGDESALDEPFNWKESLAE--RSDE---------KSGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDS----EVQ 234 (1416)
T ss_pred hccCchhhhcccccCccchhh--cccc---------ccCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEccc----hHH
Confidence 11112111 12222211111 0000 1125778888889999999888743 44544444332 134
Q ss_pred EEEcCCCCEEEEEeCCCcEEEE
Q 001176 635 LRFNKEGSLLAVTTSDNGIKIL 656 (1132)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iw 656 (1132)
+-|.+...-+++...+-++.++
T Consensus 235 mLf~~~~eai~~i~e~lr~~l~ 256 (1416)
T KOG3617|consen 235 MLFMGYCEAISIIIEFLRDCLI 256 (1416)
T ss_pred HHHhcccceEEEEeeeceeeEE
Confidence 5555544444444444444443
No 293
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.77 E-value=0.0012 Score=76.97 Aligned_cols=285 Identities=11% Similarity=0.098 Sum_probs=146.8
Q ss_pred eEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCccccc--CCCCCCCCCCeeEEEEeeC-
Q 001176 772 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND--INESKPTEESAACIALSKN- 848 (1132)
Q Consensus 772 i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~h~~~~v~~~~~s~d- 848 (1132)
|.-..+-.|..+|.++..||.+.-|.++. .+|..-... .-| ..++.--.|+..
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~--------------------~tg~lsd~Kk~~lG----t~P~~Lr~f~sk~ 641 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDI--------------------NTGQLSDRKKVTLG----TQPISLRTFSSKS 641 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEc--------------------ccceEccccccccC----CCCcEEEEEeeCC
Confidence 44445555678899999999998876643 232221111 112 334444445443
Q ss_pred CCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEE-EEEeC-CCCCeEEEEeCCCcEEEEEcccce--eeeeeccccCCe
Q 001176 849 DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATF-LAFHP-QDNNIIAIGMEDSSVQIYNVRVDE--VKTKLKGHQNRI 924 (1132)
Q Consensus 849 g~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~-l~~sp-~~~~~lasg~~dg~v~iwd~~~~~--~~~~l~~h~~~V 924 (1132)
+..+.+++|.-..+|... +++..+-- .-..+.. ..|+. ..+..|+++.. +.+++.-++.-+ .++++.-+ ...
T Consensus 642 ~t~vfa~sdrP~viY~~n-~kLv~spl-s~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~-~~p 717 (1096)
T KOG1897|consen 642 RTAVFALSDRPTVIYSSN-GKLVYSPL-SLKEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVPLG-ESP 717 (1096)
T ss_pred ceEEEEeCCCCEEEEecC-CcEEEecc-chHHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeecCC-CCh
Confidence 334555555555555433 22222110 0111111 12222 12345555433 456666554322 12223222 334
Q ss_pred eEEEEcCCCCEEEEEcC-----------C---CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC-CcEEEEE
Q 001176 925 TGLAFSPTLNALVSSGA-----------D---AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-QTHLLVV 989 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~-----------D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~~ 989 (1132)
..+++.+....+++.+. . ..++++|-.+.+..........+.. ..+..+.|..| +.++++|
T Consensus 718 rrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~----~Si~s~~~~~d~~t~~vVG 793 (1096)
T KOG1897|consen 718 RRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETA----LSIISCKFTDDPNTYYVVG 793 (1096)
T ss_pred hheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecccccccee----eeeeeeeecCCCceEEEEE
Confidence 55666654444433321 1 2367777777664443333322221 34556678888 7788875
Q ss_pred e-----------CCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCcc
Q 001176 990 H-----------ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY 1057 (1132)
Q Consensus 990 ~-----------d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~ 1057 (1132)
. .|.|.+|.. ..+.+...... --.+.+.++.. -+|++||.- ...|++|+..+.+.++.-.
T Consensus 794 T~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~---- 865 (1096)
T KOG1897|consen 794 TGLVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIEC---- 865 (1096)
T ss_pred EEeeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeehhh-hCCeEEEec--CcEEEEEEccccceehhhh----
Confidence 2 377888888 43444333211 11344444432 367777754 4689999999885553321
Q ss_pred ccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccc
Q 001176 1058 IPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1104 (1132)
Q Consensus 1058 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~ 1104 (1132)
.+...++.+...- .++.|++|..=+++.+-.....|..+
T Consensus 866 -------~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~f 904 (1096)
T KOG1897|consen 866 -------NISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGNF 904 (1096)
T ss_pred -------cccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCce
Confidence 3334444554444 67899999888888887776666444
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.73 E-value=4.7e-06 Score=83.16 Aligned_cols=233 Identities=15% Similarity=0.178 Sum_probs=138.0
Q ss_pred EEEeeCCCEEEEeeCCeEEEEECCCC--eEEEEeeC---CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeee
Q 001176 843 IALSKNDSYVMSASGGKVSLFNMMTF--KVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 917 (1132)
Q Consensus 843 ~~~s~dg~~la~~sdg~i~vwd~~~~--~~~~~~~~---~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 917 (1132)
++.+.||+.||+.-|..|.|=...+. ..+..... ....=..++||| |+.+||.+...|+|++||+...++ ..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 67789999999999988888766542 22233222 334467899999 999999999999999999975443 333
Q ss_pred cc-------ccCCeeEEEEcCCC------CEEEEEcCCCcEEEEECCCcc--ccc-ceeeeCCCCCCCCCCCceeEEECC
Q 001176 918 KG-------HQNRITGLAFSPTL------NALVSSGADAQLCMWSIDKWE--KLK-SRFIQAPAGRQSPLVGETKVQFHN 981 (1132)
Q Consensus 918 ~~-------h~~~V~~l~~spdg------~~l~s~~~D~~i~iwd~~~~~--~~~-~~~~~~~~~~~~~~~~v~~~~~s~ 981 (1132)
.. -...|.+|.|-+-. ..|+...-+|.++-|-+..+. .-. .........+. .+|.++.++|
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~p 157 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYHP 157 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEcC
Confidence 22 12456777774321 245566677777777664321 111 11111111111 6789999999
Q ss_pred CCcEEEEEe--CCeEEEEeCCCCceeecCCCCCCCCCeEEEEE---ccCCCEEEEEecCCc------EEEEeCCCcceec
Q 001176 982 DQTHLLVVH--ESQISVYDSKLECSRSWSPKDALPAPISSAIY---SCDGLLVYAGFCDGA------IGVFDAETLRFRC 1050 (1132)
Q Consensus 982 dg~~l~~~~--d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~---s~dg~~las~~~dg~------i~vwd~~~~~~~~ 1050 (1132)
..++|++++ ...-..+... ...+++=.. +|..+. ++...|+. -.+|.+-+.+...
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~-------------~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKAS-------------SCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFS 223 (282)
T ss_pred CCCEEEEeccCCCCCcccccc-------------ccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeee
Confidence 999888842 1110001110 112222222 122222 22222222 2344444433322
Q ss_pred ccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc--ccccC
Q 001176 1051 RIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE--LKWGG 1106 (1132)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~--~~~~~ 1106 (1132)
+.. .....+..+.-|| |+..||+...+|+|.+|++..-. +.|..
T Consensus 224 ~~~-----------~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 224 RQG-----------QEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ccc-----------cCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 211 2346788999999 99999999999999999998754 55655
No 295
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.72 E-value=6.9e-06 Score=92.93 Aligned_cols=197 Identities=11% Similarity=0.082 Sum_probs=125.7
Q ss_pred CEEEEEEecCCCcEEEEEEc--CCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecC--CeEEEEEcCC
Q 001176 452 GVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDY 527 (1132)
Q Consensus 452 ~v~~v~~s~d~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d--g~i~~wd~~~ 527 (1132)
.+....|+|||+.+.+++.. .+..|.++|+.+|+..... ...+......|+|++. .++++.+.+ ..|.++|+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~-~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS-KLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC-EEEEEEccCCCcEEEEEECCC
Confidence 77889999999852232222 2467999999888764433 3455566677877553 344444444 4577778766
Q ss_pred CCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC-
Q 001176 528 LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE- 606 (1132)
Q Consensus 528 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 606 (1132)
+.. ..+...........|+|||+.|+..+. +.+...|+++|+.+++..+...... . ...|+|+|++++..+..
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~rlt~~g~---~-~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVEQVVFHGK---N-NSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEeCccCCC---c-CceECCCCCEEEEEEcCC
Confidence 553 333333333445689999999888763 3345679999998887644332211 1 24899999998876533
Q ss_pred --------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCC---cEEEEEcCC
Q 001176 607 --------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN---GIKILANSD 660 (1132)
Q Consensus 607 --------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iw~~~~ 660 (1132)
..|++.|+.++... .+.... ......|+|||+.++..+.++ .+.+.++..
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~-~LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIR-RLTANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeE-ECCCCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 36888898887653 333221 234689999999888776532 344555543
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.70 E-value=3.3e-06 Score=82.37 Aligned_cols=238 Identities=13% Similarity=0.075 Sum_probs=148.3
Q ss_pred CCEEEEee-CCeEEEEECCCCeE-EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccC--Ce
Q 001176 849 DSYVMSAS-GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN--RI 924 (1132)
Q Consensus 849 g~~la~~s-dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~--~V 924 (1132)
-.+||.|+ .|...+|...+.+. +.....|...|+-+.=--+...-+..++.|.++++.++..+.....+ |.. .+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~~~~~~ 161 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HNQNLTQ 161 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--eccccce
Confidence 34777776 79999999986543 33344454443322111112234556788888999888755432222 333 37
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CCC
Q 001176 925 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLE 1002 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~ 1002 (1132)
.++++++|++++++.+....|..|.++............... +.-.+..|+.....+|+ ..||.+.+||+ ...
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-----D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-----DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-----CCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 889999999999999999999999997644322221111111 34468899998888888 58999999999 222
Q ss_pred c-eee-cCCCCCCCCCeEEEEEccCCC--EEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCC-cEEEEeCC
Q 001176 1003 C-SRS-WSPKDALPAPISSAIYSCDGL--LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH-PLVIAPHP 1077 (1132)
Q Consensus 1003 ~-~~~-~~~~~~h~~~i~~i~~s~dg~--~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p 1077 (1132)
. .+. -.....|.+.+..+.|++-|. +|+..-.-+.+.|-|++++.....+.... .....|... +..-.|..
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~----d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD----DVERKHNTQHIFGTNFNN 312 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc----cccccccccccccccccC
Confidence 1 111 112234799999999998665 34444446789999999998877665332 112233322 55666665
Q ss_pred CCCCeEEEEeCCCcEEEEecCC
Q 001176 1078 SEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1078 ~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
++.-+.+.+.+ .+.-|++..
T Consensus 313 -~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 313 -ENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred -CCcccccccch-hhheeeccc
Confidence 44444444333 334566654
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.69 E-value=2.9e-07 Score=89.19 Aligned_cols=209 Identities=13% Similarity=0.229 Sum_probs=127.9
Q ss_pred eeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC
Q 001176 346 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 425 (1132)
Q Consensus 346 V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~ 425 (1132)
|+.+.|+-+- .|+++..++.+.......+.+.. .|+-.....++. .+..|.++-.+-+.+--++.+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~--~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFK--VLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCcee--eeeccCCCCCcccccccCCceEecCC
Confidence 7777777764 58888888887777666554432 122211111111 12235544444455556788999999
Q ss_pred CCeEEEEEecCCCceeeeeeeec-ccCCEEEEEEecCCCcEEEEEEc-----CCCcEEEEECCCCeEEEEecCCCCCeEE
Q 001176 426 KHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCG-----DDKMIKVWDVVAGRKQYTFEGHEAPVYS 499 (1132)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~-----~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 499 (1132)
||.+.+.+.+.-..+. ..+.. |.+ --+.++...+. .+.++. .-+..+.|+++..+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999987622211 11111 221 12223333444 333322 2234556665543322111112234999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCeEEEEEEcC-CCCEEEEEecCCCCCCeEEEEeCCC
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESE 573 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1132)
++-+|... +.+++|+.||.+-+||++....+. .+..|..++..+-|+| ++..|++++. +|.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 99888765 789999999999999999875443 5677888999999998 5678888874 78899999764
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.69 E-value=2.1e-05 Score=83.22 Aligned_cols=219 Identities=18% Similarity=0.182 Sum_probs=142.8
Q ss_pred EEEEcC-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEe-cCCCcEEEEEEcCCCcEEEEECCCCeEE
Q 001176 410 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 410 ~v~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s-~d~~~~~l~s~~~dg~v~vwd~~~~~~~ 487 (1132)
++.|.+ ++.++++.-..+.|..|+..++.... +.. . ....+++. +++. ++.+... .+.++|+.+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~-~-~~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDL-P-GPNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EES-S-SEEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----Eec-C-CCceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 577888 77777777778999999998864322 211 1 26777887 6654 4555544 4556699998654
Q ss_pred EEecC-----CCCCeEEEEeeccCCccEEEEEecC--------CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 488 YTFEG-----HEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 488 ~~~~~-----h~~~v~~i~~~~~~~~~~l~s~s~d--------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
..... .....+.+++.++ |.+.++.... |.|..++.. .........-...+.++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 33322 3456778888764 4666666543 456666665 33333333345678999999999887
Q ss_pred EEecCCCCCCeEEEEeCCCCce----eeeeccccC--CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC
Q 001176 555 SCGTSKEGESHLVEWNESEGAI----KRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 628 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1132)
.+.. ..+.|..+++..... .+.+..... +....+++..+|+..++....+.|.+++.+ |+.+..+.....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence 6543 467799998863221 122211111 136779999999988887789999999988 888888887633
Q ss_pred CCCcceEEEc-CCCCEEEEEe
Q 001176 629 LPASPRLRFN-KEGSLLAVTT 648 (1132)
Q Consensus 629 ~~~v~~~~~s-~~~~~l~~~~ 648 (1132)
.+++++|. ++.+.|++.+
T Consensus 226 --~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 --RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SEEEEEEESTTSSEEEEEE
T ss_pred --CEEEEEEECCCCCEEEEEe
Confidence 68999994 6766666554
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.69 E-value=5.2e-07 Score=89.37 Aligned_cols=252 Identities=17% Similarity=0.204 Sum_probs=155.6
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCC--ceeeeeeeeccc------------CCEEEEEEecCCCcEEEEE
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHV------------GGVNDIAFAHPNKQLCIVT 469 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~------------~~v~~v~~s~d~~~~~l~s 469 (1132)
...-|+++.|...|.||++|...|+|.+|.-+... ..+...++++|. ..|..+.|..++.+-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45579999999999999999999999999866532 122233455664 3678888887765546667
Q ss_pred EcCCCcEEEEECCCCeEEEE--------ec-CCCCCeEEEEeeccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCC
Q 001176 470 CGDDKMIKVWDVVAGRKQYT--------FE-GHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGN 539 (1132)
Q Consensus 470 ~~~dg~v~vwd~~~~~~~~~--------~~-~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~ 539 (1132)
.+.|++|++|.+........ +. ...+++++..- -.+--.+. |..|... .++..-..|.-
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~------l~lprls~hd~iiaa~-----p~rvyaNaH~y 173 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKE------LLLPRLSEHDEIIAAK-----PCRVYANAHPY 173 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHH------hhcccccccceEEEec-----cceecccccee
Confidence 77899999999876532111 00 01223322210 00000000 1111111 11222245677
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce---eeeeccccC----CceEEEEEeCCC-CEEEEEEcCCeEEE
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRK----RSLGVVQFDTTR-NRFLAAGDEFQIKF 611 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~----~~v~~~~~~~~~-~~l~~~~~dg~i~i 611 (1132)
.+.++.++.|...++++- +-+|.+|++.--.. +..++.|.- ..|++..|+|.. ..+.-.+..|.|++
T Consensus 174 hiNSiS~NsD~et~lSaD-----dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 174 HINSISFNSDKETLLSAD-----DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred EeeeeeecCchheeeecc-----ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 899999999999999873 67799999864221 122222221 157788899976 44555678999999
Q ss_pred EECCCCee------EEEEeCC--------CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccc
Q 001176 612 WDMDNMNM------LTTVDAD--------GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 672 (1132)
Q Consensus 612 wd~~~~~~------~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 672 (1132)
-|++...+ +...... .-...|..+.|+++|+++++-+- -+|++||++..+.++.++..|.
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence 99984221 1111110 11246788999999999886544 5999999988777666665443
No 300
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.68 E-value=1.3e-05 Score=82.86 Aligned_cols=209 Identities=17% Similarity=0.167 Sum_probs=143.5
Q ss_pred CeeEEEEee-CCCEEEEee-CC-eEEEEECCCCeEEEEeeCCCCCe--EEEEEeCCCCCeEEEEeC-----CCcEEEEEc
Q 001176 839 SAACIALSK-NDSYVMSAS-GG-KVSLFNMMTFKVMTMFMSPPPAA--TFLAFHPQDNNIIAIGME-----DSSVQIYNV 908 (1132)
Q Consensus 839 ~v~~~~~s~-dg~~la~~s-dg-~i~vwd~~~~~~~~~~~~~~~~i--~~l~~sp~~~~~lasg~~-----dg~v~iwd~ 908 (1132)
....++.+| ++..++.+- -| ...+||..+++....+....+.- -.-+||+ ||++|.+.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 345788889 555666666 45 48999999999988877655543 2578999 8888887643 478999999
Q ss_pred c-cceeeeeeccccCCeeEEEEcCCCCEEEEEcC------------------CCcEEEEECCCcccccceeeeCCCCCCC
Q 001176 909 R-VDEVKTKLKGHQNRITGLAFSPTLNALVSSGA------------------DAQLCMWSIDKWEKLKSRFIQAPAGRQS 969 (1132)
Q Consensus 909 ~-~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~------------------D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 969 (1132)
. +.+.+..+..|.-.--.+.+.|||+.|+.+-. +..+..-|..+++.+.+..+.... |.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~-~~- 162 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL-HQ- 162 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc-cc-
Confidence 9 66788888888777778899999987776521 234666667777755443332111 11
Q ss_pred CCCCceeEEECCCCcEEEEEe-CC-------eEEEEeCCCCceeecCCC----CCCCCCeEEEEEccCCCEEEEE-ecCC
Q 001176 970 PLVGETKVQFHNDQTHLLVVH-ES-------QISVYDSKLECSRSWSPK----DALPAPISSAIYSCDGLLVYAG-FCDG 1036 (1132)
Q Consensus 970 ~~~~v~~~~~s~dg~~l~~~~-d~-------~v~vwd~~~~~~~~~~~~----~~h~~~i~~i~~s~dg~~las~-~~dg 1036 (1132)
..+..+++.++|..++... .+ -+.+++.... +..+... ......|-+|+++++|.++++. =.-|
T Consensus 163 --lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 163 --LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred --cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 4688999999998777642 11 1444444221 2222111 1225789999999999877554 4677
Q ss_pred cEEEEeCCCcceecccC
Q 001176 1037 AIGVFDAETLRFRCRIG 1053 (1132)
Q Consensus 1037 ~i~vwd~~~~~~~~~~~ 1053 (1132)
.+.+||..+|+.+....
T Consensus 240 ~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEEECCCCCEeeccc
Confidence 89999999999987664
No 301
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.68 E-value=3.1e-07 Score=95.05 Aligned_cols=159 Identities=11% Similarity=0.062 Sum_probs=107.7
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE----eCCeEEEEeC
Q 001176 924 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV----HESQISVYDS 999 (1132)
Q Consensus 924 V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~----~d~~v~vwd~ 999 (1132)
...+..+++++++|.+..+....++++..... ...++...... ...+++.|-.+...+.++ +...+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP----KRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc----cCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 34456677888888888777777777765443 12222222221 122455555555444442 3345555555
Q ss_pred CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCC
Q 001176 1000 KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSE 1079 (1132)
Q Consensus 1000 ~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 1079 (1132)
...+ ....-+|-+.++.+++|||+++++++..|..|+|-.+..--.+..+ .-||...|..++..+
T Consensus 140 ~~~~---~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf----------clGH~eFVS~isl~~-- 204 (390)
T KOG3914|consen 140 DSGR---CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF----------CLGHKEFVSTISLTD-- 204 (390)
T ss_pred cccC---cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh----------ccccHhheeeeeecc--
Confidence 3222 2223567899999999999999999999999999888764444333 248888999888875
Q ss_pred CCeEEEEeCCCcEEEEecCCCcc
Q 001176 1080 PNQIALGMSDGAVHVVEPSDAEL 1102 (1132)
Q Consensus 1080 ~~~l~s~~~Dg~i~vW~~~~~~~ 1102 (1132)
++.|++||.|++|++||+.+|..
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred CceeeecCCCCcEEEEecccCCc
Confidence 56799999999999999999983
No 302
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=1.9e-07 Score=99.26 Aligned_cols=272 Identities=17% Similarity=0.199 Sum_probs=173.5
Q ss_pred ccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcc
Q 001176 730 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 809 (1132)
Q Consensus 730 ~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 809 (1132)
.....++.++.|++|++|.+............++.-..|...|.++.|-.+-++++++ ||.+.+||-
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDP----------- 811 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDP----------- 811 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecc-----------
Confidence 3345667778899999999987555444333334445589999999999998877654 677888863
Q ss_pred ccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee--CCCEEEEe-e-CCeEEEEECCCCeEEEEee-----CCCCC
Q 001176 810 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK--NDSYVMSA-S-GGKVSLFNMMTFKVMTMFM-----SPPPA 880 (1132)
Q Consensus 810 ~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~--dg~~la~~-s-dg~i~vwd~~~~~~~~~~~-----~~~~~ 880 (1132)
--|.++........ .+.+..+..-+ |...+..| + ..+|+++|...++-...++ ++..-
T Consensus 812 -----------Figr~Laq~~dapk--~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 812 -----------FIGRLLAQMEDAPK--EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred -----------cccchhHhhhcCcc--cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 23333222111111 22222232223 44455555 4 6899999999877655554 44566
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEE-EECCCcccccce
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM-WSIDKWEKLKSR 959 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~i-wd~~~~~~~~~~ 959 (1132)
+.++++.+ .|+.+|.|-.+|.|.+.|..+|+.+..++.-......++ .|..+.|+....|.++.+ |..-.+..
T Consensus 879 ~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgim---- 952 (1034)
T KOG4190|consen 879 TRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM---- 952 (1034)
T ss_pred eeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCee----
Confidence 89999999 899999999999999999999999988877666666665 467788888888999988 97765432
Q ss_pred eeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeCCC-----CceeecCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001176 960 FIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKL-----ECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1033 (1132)
Q Consensus 960 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~-----~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~ 1033 (1132)
.++..... .+.. -...-|.-|++. ....+.||--.. ..+..+++ +...+..++++--|=..-+..|+
T Consensus 953 h~q~kppp----epah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~-d~f~G~lTala~LPLN~afLaGn 1025 (1034)
T KOG4190|consen 953 HLQDKPPP----EPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRP-DEFPGTLTALAPLPLNCAFLAGN 1025 (1034)
T ss_pred eeccCCCC----cchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccc-cccCCccceeeeccccchhhccC
Confidence 11111100 0100 012234445554 444566775411 11112222 22366788888888777677788
Q ss_pred cCCcEEE
Q 001176 1034 CDGAIGV 1040 (1132)
Q Consensus 1034 ~dg~i~v 1040 (1132)
+.|.|.+
T Consensus 1026 e~G~IaL 1032 (1034)
T KOG4190|consen 1026 EHGAIAL 1032 (1034)
T ss_pred CCCceee
Confidence 8888875
No 303
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.64 E-value=5.8e-05 Score=73.69 Aligned_cols=143 Identities=8% Similarity=0.041 Sum_probs=92.8
Q ss_pred EccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEE
Q 001176 351 FHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVH 430 (1132)
Q Consensus 351 ~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~ 430 (1132)
.-+|.+.+++.|+..+.+.--|..+|+..- +. --+..|-+-+.- -|++++.|+..|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~W-------e~-------------ilg~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIW-------EA-------------ILGVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEe-------eh-------------hhCceeeeeeEE-ECCEEEEEEccCcEE
Confidence 344556789999999999999999887642 21 012233332222 578899999999999
Q ss_pred EEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccE
Q 001176 431 LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQF 510 (1132)
Q Consensus 431 iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~ 510 (1132)
+.+.++|+.......+..- .+ .....+++. ++..|+.|++.+.-|..+..++...+-....-.+-++.+. + ..
T Consensus 77 fl~~~tGs~~w~f~~~~~v--k~-~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~s 149 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILETV--KV-RAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-GS 149 (354)
T ss_pred EEEecchhheeeeeehhhh--cc-ceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-ce
Confidence 9999999776544333221 11 223456777 8999999999999999999998886643333333334332 2 23
Q ss_pred EEEEecCCeEE
Q 001176 511 IFSTAIDGKIK 521 (1132)
Q Consensus 511 l~s~s~dg~i~ 521 (1132)
|..+...|.+.
T Consensus 150 ly~a~t~G~vl 160 (354)
T KOG4649|consen 150 LYAAITAGAVL 160 (354)
T ss_pred EEEEeccceEE
Confidence 44444444443
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=2.3e-08 Score=111.94 Aligned_cols=216 Identities=14% Similarity=0.212 Sum_probs=157.7
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEE-cCCC-cEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDK-MIKV 478 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~-~~dg-~v~v 478 (1132)
+..|...-+|++||-+.+.|+.|+..|.|+++++.+|.... ...+|..+|+.+.=+.||. ..++. +... -..+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs--~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGS--TQLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcc--eeeeeccccCchHHH
Confidence 66788999999999999999999999999999999998665 5678999999999999998 44443 3333 5679
Q ss_pred EECCC-CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCC---CCeEEEEEEcCCCCEE
Q 001176 479 WDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAP---GNWCTMMAYSADGTRL 553 (1132)
Q Consensus 479 wd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~---~~~v~~~~~s~~~~~l 553 (1132)
|++.+ +...++|.+ -.++.|+... ..-+.|..-....+||+.+.....++ ... ...-.+..|+|+.+++
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99764 444555543 3455665432 33445555567889999988776542 221 2234678899999888
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 633 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1132)
+-- | .+||.+..+.++.|..... ...-.|+|.|..++.-++ |||+++.+.+...+.- .-.
T Consensus 1246 lnd-------G--vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L----dqc 1305 (1516)
T KOG1832|consen 1246 LND-------G--VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL----DQC 1305 (1516)
T ss_pred eeC-------c--eeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCccc----cce
Confidence 753 2 5799998888777765542 223569999999988765 8999999888776543 236
Q ss_pred eEEEcCCCCEEEEE
Q 001176 634 RLRFNKEGSLLAVT 647 (1132)
Q Consensus 634 ~~~~s~~~~~l~~~ 647 (1132)
.+.|+..|..++..
T Consensus 1306 ~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYAM 1319 (1516)
T ss_pred EEEeccCccchhhh
Confidence 78888888766543
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.3e-06 Score=89.49 Aligned_cols=214 Identities=10% Similarity=0.152 Sum_probs=145.6
Q ss_pred cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC--C-eEEEEecCCCCCeEEEEeeccCCccEEEEEec-CCeEEEE
Q 001176 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--G-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAW 523 (1132)
Q Consensus 448 ~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~--~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~~w 523 (1132)
-|...|+.+.-+.. + ++.+++.||.++.|--.. | +.+..+..|-..|.+++.+. ++.++.|.+. |..++++
T Consensus 7 mhrd~i~hv~~tka-~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~--dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-K--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY--DGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeehh-h--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc--cceeEeeccCcccceeEE
Confidence 37777877766543 4 799999999999997432 1 23455677888888888765 4478888777 9999999
Q ss_pred EcCCCCceEEecC--CCCeEEEEEEcCC-CCEEEEEecCCCCCCeEEEEeCCCCc-eeeeeccccCCceEEEEEeCCCCE
Q 001176 524 LYDYLGSRVDYDA--PGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNR 599 (1132)
Q Consensus 524 d~~~~~~~~~~~~--~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~ 599 (1132)
|+.+-...-.+.. ..+.+.. ..++. -..+++.+. -.++.+.++|-.... ...-+.+.+..+|.++.+.+.+..
T Consensus 82 DvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred EeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 9887554422221 1222222 12222 222333332 247789999976543 445555555558999999999999
Q ss_pred EEEEEcCCeEEEEECCC------CeeEEEEeC-------CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeee
Q 001176 600 FLAAGDEFQIKFWDMDN------MNMLTTVDA-------DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 666 (1132)
Q Consensus 600 l~~~~~dg~i~iwd~~~------~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1132)
+++....|.|.-|.... .+....++. ........++.|+|+|..+.+-+.|..|++++..++ ++.+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvq 237 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQ 237 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhh
Confidence 99999999999998873 111111111 122345689999999999999999999999999998 6665
Q ss_pred eccc
Q 001176 667 MLEG 670 (1132)
Q Consensus 667 ~~~~ 670 (1132)
.+..
T Consensus 238 eiDE 241 (558)
T KOG0882|consen 238 EIDE 241 (558)
T ss_pred hhhc
Confidence 5543
No 306
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.61 E-value=8.1e-06 Score=86.25 Aligned_cols=224 Identities=16% Similarity=0.151 Sum_probs=135.9
Q ss_pred CCeEEEEECCCCeEEEEeeCC--CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCC
Q 001176 857 GGKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 934 (1132)
Q Consensus 857 dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 934 (1132)
+|+|..||..+|+.+....-- .....+..+ + ++..+++++.++.|+.||..+|+.+.++.. .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 588999999999998887531 122222233 2 345666778999999999999998888765 33322222 22455
Q ss_pred EEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeC-CCCceeecCCCCC
Q 001176 935 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSWSPKDA 1012 (1132)
Q Consensus 935 ~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~-~~~~~~~~~~~~~ 1012 (1132)
.++.++.|+.++.+|..+++..-.......... ..........++..++++ .++.+..+|. +++.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 666666888999999999886443211111110 011112222236667775 4899999998 6766555543221
Q ss_pred CC-CC------eEEEEEccCCCEEEEEecCCc-EEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEE
Q 001176 1013 LP-AP------ISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIA 1084 (1132)
Q Consensus 1013 h~-~~------i~~i~~s~dg~~las~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 1084 (1132)
.. .. +..-....++ .++.++.+|. +.+ |+.+++.+-... . + .+.. ...+ .+..|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~----------~--~~~~-~~~~-~~~~l~ 216 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-I----------S--GIYS-LPSV-DGGTLY 216 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-S----------S---ECE-CEEC-CCTEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-C----------C--CccC-Ccee-eCCEEE
Confidence 11 11 1222222345 7777777885 555 999998653221 1 0 0111 1223 567788
Q ss_pred EEeCCCcEEEEecCCCccccc
Q 001176 1085 LGMSDGAVHVVEPSDAELKWG 1105 (1132)
Q Consensus 1085 s~~~Dg~i~vW~~~~~~~~~~ 1105 (1132)
.++.|+.|..||+.+++..|.
T Consensus 217 ~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 217 VTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEETTTEEEEEETTTTEEEEE
T ss_pred EEeCCCEEEEEECCCCCEEeE
Confidence 777999999999999998884
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.60 E-value=9.7e-05 Score=78.18 Aligned_cols=221 Identities=14% Similarity=0.121 Sum_probs=144.1
Q ss_pred EEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc-CCCCeEEEEeCC
Q 001176 348 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-PDGLMLGVAFSK 426 (1132)
Q Consensus 348 ~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~las~~~d 426 (1132)
++.|.+....|+++....+.|..|+..++..... .......+++. +++.++ .+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~----------------------~~~~~~G~~~~~~~g~l~-v~~~~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI----------------------DLPGPNGMAFDRPDGRLY-VADSG 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE----------------------ESSSEEEEEEECTTSEEE-EEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE----------------------ecCCCceEEEEccCCEEE-EEEcC
Confidence 6788984444788888889999999988764321 11126677787 665554 44455
Q ss_pred CeEEEEEecCCCceeeeeeee--c-ccCCEEEEEEecCCCcEEEEEEcCC--------CcEEEEECCCCeEEEEecCCCC
Q 001176 427 HIVHLYTYNPTGELRQHLEID--A-HVGGVNDIAFAHPNKQLCIVTCGDD--------KMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 427 g~i~iwd~~~~~~~~~~~~l~--~-h~~~v~~v~~s~d~~~~~l~s~~~d--------g~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
+ +.++|..+++.. ...... . .....+++++.|+|+ +.++.... |.|..++.. ++...... .-.
T Consensus 61 ~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~ 134 (246)
T PF08450_consen 61 G-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLG 134 (246)
T ss_dssp C-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EES
T ss_pred c-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Ccc
Confidence 5 566698887433 332332 1 345788999999998 56665433 557777766 55443333 345
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-e---E---EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-R---V---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~---~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
..+.|+|++++. .++++-+..+.|..++++.... . . .+....+..-.+++..+|+..++.. ..+.|.+
T Consensus 135 ~pNGi~~s~dg~-~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~----~~~~I~~ 209 (246)
T PF08450_consen 135 FPNGIAFSPDGK-TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW----GGGRIVV 209 (246)
T ss_dssp SEEEEEEETTSS-EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE----TTTEEEE
T ss_pred cccceEECCcch-heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc----CCCEEEE
Confidence 678999988652 3456778889999999875443 1 1 1222233588899999998777654 3677999
Q ss_pred EeCCCCceeeeeccccCCceEEEEEe-CCCCEEEEEE
Q 001176 569 WNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 604 (1132)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 604 (1132)
+|.+ |+.+..+..... .+++++|. ++.+.|+..+
T Consensus 210 ~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 210 FDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred ECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 9988 888888877644 78889994 6666666543
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.1e-05 Score=83.62 Aligned_cols=249 Identities=13% Similarity=0.155 Sum_probs=148.2
Q ss_pred ccCCCCcCeEEEEEcCCCC-eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 400 LLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
++.+|...|..++|||..+ ++..++.+..|.|.|+++...+. .+..| ..+++++|.-|..+ +|+.|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5778999999999999877 78889999999999999976554 34556 78999999999876 8999999999999
Q ss_pred EECCCCeE-EEEecC--CCCCeEEEEeeccC----CccEEEEEecCCeEEEEEcCCCC--ceEEecC-CCCeEEEEEEcC
Q 001176 479 WDVVAGRK-QYTFEG--HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLG--SRVDYDA-PGNWCTMMAYSA 548 (1132)
Q Consensus 479 wd~~~~~~-~~~~~~--h~~~v~~i~~~~~~----~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~-~~~~v~~~~~s~ 548 (1132)
+|++..+- +..+.+ ...+|..++..+.. .|.+++..+.+ +..|.+.... ....... ..+...++++.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986542 223322 23445444422211 12444444433 3455543222 2222222 234555666666
Q ss_pred CCCEEEEEecCCCCCCeEEE----EeCCCCceeeeec-cc---cCCc---eEEEEEeCCCCEEEE-EEcCCeEEEEECCC
Q 001176 549 DGTRLFSCGTSKEGESHLVE----WNESEGAIKRTYS-GF---RKRS---LGVVQFDTTRNRFLA-AGDEFQIKFWDMDN 616 (1132)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~----wd~~~~~~~~~~~-~~---~~~~---v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 616 (1132)
-.+.++....++.+-.+++. -|-.+|..+..-+ ++ .... -..+.-.++.++++. ++..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 55666555443211111111 1222333222111 11 1000 111222445566665 55778999999999
Q ss_pred CeeEEEEeCCCCCCCcceEEEcC-CC-CEEEEEeCCCcEEEEEcC
Q 001176 617 MNMLTTVDADGGLPASPRLRFNK-EG-SLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~-~~-~~l~~~~~dg~i~iw~~~ 659 (1132)
++.++++... .+|..++... +| .+|+.-+ |..++||..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999998765 2566666544 33 4555544 5588888654
No 309
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.58 E-value=1.6e-06 Score=86.12 Aligned_cols=255 Identities=15% Similarity=0.216 Sum_probs=162.7
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCcccccc---ceeeeecccccccccccccC--CCCcCeEEEEEcCC
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHK---PFKVWDISAASMPLQNALLN--DAAISVNRCVWGPD 416 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~spd 416 (1132)
..+.|++|.|...|. +|++|...|.|.++.-.....-..+ .|...++. -..++ .-...|..+.|..+
T Consensus 25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E-------FDYLkSleieEKin~I~w~~~ 96 (460)
T COG5170 25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE-------FDYLKSLEIEEKINAIEWFDD 96 (460)
T ss_pred ccceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccc-------hhhhhhccHHHHhhheeeecC
Confidence 457899999999998 6999998899999986543210000 01100000 00011 12346888888876
Q ss_pred CC--eEEEEeCCCeEEEEEecCC------------------C-ce--------------------e-eeeeeecccCCEE
Q 001176 417 GL--MLGVAFSKHIVHLYTYNPT------------------G-EL--------------------R-QHLEIDAHVGGVN 454 (1132)
Q Consensus 417 g~--~las~~~dg~i~iwd~~~~------------------~-~~--------------------~-~~~~l~~h~~~v~ 454 (1132)
+. .++..+.|.+|++|.+... + .+ . +...-..|.--|.
T Consensus 97 t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 54 4555568999999997542 0 00 0 0001245777789
Q ss_pred EEEEecCCCcEEEEEEcCCCcEEEEECCCCeE---EEEecCCC-----CCeEEEEeeccCCccEEEEEecCCeEEEEEcC
Q 001176 455 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHE-----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526 (1132)
Q Consensus 455 ~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~---~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~ 526 (1132)
++.|..|.. .++++ .|-.|.+|++.-... +..++.|. .-|++..|+|... ..+.-.+..|.|++-|++
T Consensus 177 SiS~NsD~e--t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 177 SISFNSDKE--TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeecCchh--eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhh
Confidence 999999887 56655 578899999764322 23334443 3477788888754 566777788999999998
Q ss_pred CCC------ceE--E--------ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC-ceeeeeccccC----
Q 001176 527 YLG------SRV--D--------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRK---- 585 (1132)
Q Consensus 527 ~~~------~~~--~--------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~---- 585 (1132)
... ... . +..-...|..+.|+++|+++++-. -.++.+||.+.. .++.++.-|..
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~ 327 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHH
Confidence 321 111 1 111233688899999999999864 457999999854 46666543321
Q ss_pred -------Cce---EEEEEeCCCCEEEEEEcCCeEEEEE
Q 001176 586 -------RSL---GVVQFDTTRNRFLAAGDEFQIKFWD 613 (1132)
Q Consensus 586 -------~~v---~~~~~~~~~~~l~~~~~dg~i~iwd 613 (1132)
..| ..+.|+.|...+++|+..+..-++-
T Consensus 328 l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 122 2377888888888888776666664
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.55 E-value=1.9e-05 Score=83.36 Aligned_cols=221 Identities=14% Similarity=0.112 Sum_probs=138.6
Q ss_pred CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeecc
Q 001176 426 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505 (1132)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~ 505 (1132)
+|+|..||..+|+.+-.. .+..-.....+. ..+++. .+++++.++.|..||..+|+.+.++.. ...+.... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~---~ 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY-DLGPGIGGPVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP---V 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEE-ECSSSCSSEEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE---E
T ss_pred CCEEEEEECCCCCEEEEE-ECCCCCCCccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee---e
Confidence 688999999888766543 221111122221 333455 577778899999999999999877764 22211111 1
Q ss_pred CCccEEEEEecCCeEEEEEcCCCCceEEe-cCCC---CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPG---NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 506 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
..+..++.++.++.++.+|..+++..... .... ..........++..++++.. ++.|+.+|+++|+.+....
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 12256777778899999999999888773 3221 11122233333777777753 6779999999999988876
Q ss_pred cccCCc---------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001176 582 GFRKRS---------LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 652 (1132)
Q Consensus 582 ~~~~~~---------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1132)
...... +..-....++ .++.++.++.+..+|..+++.+.... .. .+.. ....++..|++++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTTE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCCE
Confidence 643211 1122222234 77777777754444999999765333 11 2222 13467788888889999
Q ss_pred EEEEEcCCccee
Q 001176 653 IKILANSDGVRL 664 (1132)
Q Consensus 653 i~iw~~~~~~~~ 664 (1132)
|..||+.+++..
T Consensus 224 l~~~d~~tG~~~ 235 (238)
T PF13360_consen 224 LYALDLKTGKVV 235 (238)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCCEE
Confidence 999999999543
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.55 E-value=8.9e-05 Score=76.87 Aligned_cols=230 Identities=13% Similarity=0.089 Sum_probs=150.6
Q ss_pred EEEEEcC-CCCeEEEEeCCCe-EEEEEecCCCceeeeeeeecccC--CEEEEEEecCCCcEEEEEE-----cCCCcEEEE
Q 001176 409 NRCVWGP-DGLMLGVAFSKHI-VHLYTYNPTGELRQHLEIDAHVG--GVNDIAFAHPNKQLCIVTC-----GDDKMIKVW 479 (1132)
Q Consensus 409 ~~v~~sp-dg~~las~~~dg~-i~iwd~~~~~~~~~~~~l~~h~~--~v~~v~~s~d~~~~~l~s~-----~~dg~v~vw 479 (1132)
..++.+| ++..++.+-.-|+ ..+||..+++..... ....+ ---.-+||+||+ +|++. +..|.|-||
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~---~a~~gRHFyGHg~fs~dG~--~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL---WAPPGRHFYGHGVFSPDGR--LLYTTENDYETGRGVIGVY 82 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE---cCCCCCEEecCEEEcCCCC--EEEEeccccCCCcEEEEEE
Confidence 3578888 5667777877765 789999998766532 11111 122468999999 66665 335799999
Q ss_pred ECC-CCeEEEEecCCCCCeEEEEeeccCCccEEEEEe------------------cCCeEEEEEcCCCCceEE--e--cC
Q 001176 480 DVV-AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA------------------IDGKIKAWLYDYLGSRVD--Y--DA 536 (1132)
Q Consensus 480 d~~-~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s------------------~dg~i~~wd~~~~~~~~~--~--~~ 536 (1132)
|.. +.+.+.++..|.-.-..+.+.|++ ..|+.+- .+-.+..-|..+++.+.. + ..
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG--~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDG--ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCC--CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence 998 667788888777666677776654 4555541 223344556666665554 3 23
Q ss_pred CCCeEEEEEEcCCCCEEEEEecCCC---CCCeEEEEeCCCCceeeeeccc------cCCceEEEEEeCCCCEEEEEE-cC
Q 001176 537 PGNWCTMMAYSADGTRLFSCGTSKE---GESHLVEWNESEGAIKRTYSGF------RKRSLGVVQFDTTRNRFLAAG-DE 606 (1132)
Q Consensus 537 ~~~~v~~~~~s~~~~~l~~~~~~~~---~~~~i~~wd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~-~d 606 (1132)
+...+..+++.++|..++..-..++ .-.-+.+++. ++.+..+... -.+.+-+|++++++..+++.+ ..
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 5568999999999988776654322 1223444443 3323322211 123688999999998887766 77
Q ss_pred CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001176 607 FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 653 (1132)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1132)
+.+.+||..+++.+...... .+..++..+++ ++++.+ .|.+
T Consensus 239 g~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred CEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCC-CccE
Confidence 89999999999999887654 45677777777 455443 4443
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.3e-06 Score=89.50 Aligned_cols=255 Identities=13% Similarity=0.065 Sum_probs=175.9
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC-CCcEEEEECC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVV 482 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-dg~v~vwd~~ 482 (1132)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.....+..|.+.|.+++.+-|+. ++.|.+. |..++++|++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 77777776654 567899999999999998655333444445678999999999999998 8899777 9999999998
Q ss_pred CCeEEEEec--CCCCCeEEEEeeccCCc--cEEEEEecCCeEEEEEcCCCCceE--EecCCCCeEEEEEEcCCCCEEEEE
Q 001176 483 AGRKQYTFE--GHEAPVYSVCPHHKESI--QFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 483 ~~~~~~~~~--~h~~~v~~i~~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
+-..+.-++ .-.+.+..+. ..++- .+-++.-.++.+.++|-....+.. .-..|..+|..+.+++-+..+++.
T Consensus 85 n~DminmiKL~~lPg~a~wv~--skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVT--SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred ccchhhhcccccCCCceEEec--CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 765443222 1122222221 11111 233444568889999987665433 445678899999999999998887
Q ss_pred ecCCCCCCeEEEEeCCC------Cceeeeecc--------ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEE
Q 001176 557 GTSKEGESHLVEWNESE------GAIKRTYSG--------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 622 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~------~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (1132)
+..|.|..|.... .+....++. .......++.|+|++..+.+-+.|..|++++..+++.++.
T Consensus 163 ----D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 163 ----DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred ----cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 3478899998762 111111111 0112567899999999999999999999999999887654
Q ss_pred EeCCC-------------------------------CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecc
Q 001176 623 VDADG-------------------------------GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 623 ~~~~~-------------------------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
+.... +...-..+.|...|++|+.++-= .|++.++.++ ...+.+.
T Consensus 239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn-~v~ri~g 314 (558)
T KOG0882|consen 239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTN-TVVRILG 314 (558)
T ss_pred hhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecC-eEEEEec
Confidence 43110 01123457788888998888765 5788899888 6666553
No 313
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.52 E-value=0.00048 Score=67.51 Aligned_cols=140 Identities=9% Similarity=-0.049 Sum_probs=92.8
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCce
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 588 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 588 (1132)
.+++.|+..+.+.--|..++........ +.++.+-+.- -|++++.+.. .+.+++.+.++|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhh-hc
Confidence 5677777777777777777665553322 2233333322 4667777775 66699999999988887765443 11
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 589 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
......+++..+..|+.|+..+..|..+...+...+..+. ...+-+..|-...|+.+...|.+..-.
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVLAVT 163 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceEEEEc
Confidence 2245678899999999999999999999999988776554 334445566223444455555554433
No 314
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=1.4e-06 Score=89.37 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=98.6
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHcCCC--------ccHHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHH
Q 001176 5 SRELVFLILQFLDEEKFKETVHKLEQESGFF--------FNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEI 76 (1132)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1132)
+.-+.|+|..||..+||.++|..|-++|.+. .++...++++++|+...|+.-...-...- .+....+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~L-kK~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVEL-KKEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-HhccchhhhHH
Confidence 3457899999999999999999999999985 23778899999999888876554321110 02233478999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCcc
Q 001176 77 RKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFR 125 (1132)
Q Consensus 77 ~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 125 (1132)
..|.|+||+..+++.+|+.+.++++.|....+.++++....++.++...
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t 242 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYT 242 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcccc
Confidence 9999999999999999999999999999888999999999999886443
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.49 E-value=2.1e-05 Score=89.02 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=75.9
Q ss_pred EeeCCCEEEEeeCCeEEEEECCC-----CeEEEEeeCCCCCeEEEEEeCCCCCeEEE-EeCCCcEEEEEccccee-----
Q 001176 845 LSKNDSYVMSASGGKVSLFNMMT-----FKVMTMFMSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRVDEV----- 913 (1132)
Q Consensus 845 ~s~dg~~la~~sdg~i~vwd~~~-----~~~~~~~~~~~~~i~~l~~sp~~~~~las-g~~dg~v~iwd~~~~~~----- 913 (1132)
+.+||++... .+++|.+.|..+ .+.+..+. -......++++| ||+++++ +..+.+|.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457887665 467899999988 34555554 445678899999 6766554 55689999999987542
Q ss_pred -------eeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCC
Q 001176 914 -------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 914 -------~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~ 952 (1132)
..+..- ...-...+|.++|....|...|..|..|++..
T Consensus 361 ~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333332 22334678999999888999999999999986
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=4.3e-07 Score=91.58 Aligned_cols=166 Identities=14% Similarity=0.094 Sum_probs=124.5
Q ss_pred EEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCC
Q 001176 348 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 427 (1132)
Q Consensus 348 ~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg 427 (1132)
.++||-+-.-+-++.+.+..|-+-|+++|-... + ..++.|.++.|...+.++..|+.+|
T Consensus 216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRng 274 (425)
T KOG2695|consen 216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRNG 274 (425)
T ss_pred hhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccCC
Confidence 337775432223444557889999999885432 2 2677899999999999999999999
Q ss_pred eEEEEEecCCCc--eeeeeeeecccCCEEEEEEec-CCCcEEEEEEcCCCcEEEEECCCCeE---EEEecCCCCCeEEEE
Q 001176 428 IVHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYSVC 501 (1132)
Q Consensus 428 ~i~iwd~~~~~~--~~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~dg~v~vwd~~~~~~---~~~~~~h~~~v~~i~ 501 (1132)
.|..+|++.+.. ..+...+ .|...|+++.... +++ +|++.+.+|.|++||.+--++ +.++.||-..-.-+-
T Consensus 275 eI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~ 351 (425)
T KOG2695|consen 275 EIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLP 351 (425)
T ss_pred cEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccc
Confidence 999999987521 1111122 4889999998877 555 788888999999999987666 889999977666665
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 537 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 537 (1132)
++-++....+++++.|...|+|.++.+.....+...
T Consensus 352 ~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 352 AHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 555555578999999999999999988776665543
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.48 E-value=8.4e-05 Score=77.93 Aligned_cols=285 Identities=10% Similarity=0.107 Sum_probs=162.7
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE----------cCCeEEEEECCCCeeEEEEeCCCC-----
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMDNMNMLTTVDADGG----- 628 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~----- 628 (1132)
++++++|..+++.+-.+.... ...+..+|+++.+++++ ..-.|.+||..+..+...+..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 469999999999887776543 23366899999988753 234689999999998887765532
Q ss_pred CCCcceEEEcCCCCEEEEEeC--CCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCC
Q 001176 629 LPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 706 (1132)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 706 (1132)
.......+++.||+++++... ...|.+.|+..+ +....+...... .
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~PGC~----------------------------~--- 141 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTPGCW----------------------------L--- 141 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGTSEE----------------------------E---
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCCCEE----------------------------E---
Confidence 123456778888888776544 457788888776 444444322110 0
Q ss_pred CCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEe
Q 001176 707 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA 786 (1132)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 786 (1132)
.....+..+...++||.+....++.......... ..-......-+..-++...+..++-
T Consensus 142 --------------------iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~~F~~~~dp~f~~~~~~~~~~~~~F 200 (342)
T PF06433_consen 142 --------------------IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST-KVFDPDDDPLFEHPAYSRDGGRLYF 200 (342)
T ss_dssp --------------------EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE-EESSTTTS-B-S--EEETTTTEEEE
T ss_pred --------------------EEecCCCceEEEecCCceEEEEECCCCCEeEeec-cccCCCCcccccccceECCCCeEEE
Confidence 1112234566777888888888875333221111 1111112222334445555555555
Q ss_pred ecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee----CC----
Q 001176 787 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GG---- 858 (1132)
Q Consensus 787 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s----dg---- 858 (1132)
.+-+|.|+--++........ .-|.+.+...... +.. .+.-.-+++++..+.|.+.- ++
T Consensus 201 ~Sy~G~v~~~dlsg~~~~~~---------~~~~~~t~~e~~~---~Wr--PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKd 266 (342)
T PF06433_consen 201 VSYEGNVYSADLSGDSAKFG---------KPWSLLTDAEKAD---GWR--PGGWQLIAYHAASGRLYVLMHQGGEGSHKD 266 (342)
T ss_dssp EBTTSEEEEEEETTSSEEEE---------EEEESS-HHHHHT---TEE--E-SSS-EEEETTTTEEEEEEEE--TT-TTS
T ss_pred EecCCEEEEEeccCCccccc---------CcccccCcccccc---CcC--CcceeeeeeccccCeEEEEecCCCCCCccC
Confidence 66777777776654332111 1122111110000 000 12233466766555444431 12
Q ss_pred ---eEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEEcccceeeeeecc
Q 001176 859 ---KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKG 919 (1132)
Q Consensus 859 ---~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~ 919 (1132)
.|.++|+.+++.+..+.. ..++.+|+++.++..+|...+ .++.+.+||..+|+.+++++.
T Consensus 267 pgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 267 PGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp -EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 399999999999999873 346789999996665665544 578999999999999988764
No 318
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.47 E-value=6.3e-05 Score=84.05 Aligned_cols=268 Identities=15% Similarity=0.209 Sum_probs=147.0
Q ss_pred ccCCCeEEEEE--------cCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 352 HPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 352 spdg~~lla~g--------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
|||++++|+.- +..+.+.|||+.+++... +......+....|||||+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 68888655522 224678889988876543 12225678899999999999998
Q ss_pred eCCCeEEEEEecCCCceeeeeeeec-------c---------cCCEEEEEEecCCCcEEEEEEc-CCCcE----------
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDA-------H---------VGGVNDIAFAHPNKQLCIVTCG-DDKMI---------- 476 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~-------h---------~~~v~~v~~s~d~~~~~l~s~~-~dg~v---------- 476 (1132)
. ++.|.+++..++...+. +..| - -+.-..+.||||+++ |+... .+..|
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCC
Confidence 4 57899998877643321 1222 0 112357889999995 43322 12222
Q ss_pred -------------------------EEEECCCCeEEE-E-e---cCCCCCeEEEEeeccCCccEEEEEecCC---eEEEE
Q 001176 477 -------------------------KVWDVVAGRKQY-T-F---EGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAW 523 (1132)
Q Consensus 477 -------------------------~vwd~~~~~~~~-~-~---~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~~w 523 (1132)
.|+|+.+++... . . ..-..-+..+.|.+++..-.+.....+. .+.++
T Consensus 136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~ 215 (353)
T PF00930_consen 136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLC 215 (353)
T ss_dssp STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEE
T ss_pred ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEE
Confidence 234444443211 0 0 1123345566666554211222222222 35566
Q ss_pred EcCCCCceEEecC-CCCeE---EEEEEc-CCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCce-EEEEEeCCC
Q 001176 524 LYDYLGSRVDYDA-PGNWC---TMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-GVVQFDTTR 597 (1132)
Q Consensus 524 d~~~~~~~~~~~~-~~~~v---~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-~~~~~~~~~ 597 (1132)
|..++........ ..+.| ....+. +++..++..+. +++-.+|++++...+.......+.- .| ..+.+++++
T Consensus 216 d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G~~--~V~~i~~~d~~~ 292 (353)
T PF00930_consen 216 DASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSGDW--EVTSILGWDEDN 292 (353)
T ss_dssp EECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-SSS---EEEEEEEECTS
T ss_pred ECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccCce--eecccceEcCCC
Confidence 7766555443322 22222 244554 78877776665 6778889999988777443333322 45 457888888
Q ss_pred CEEEEEE-c----CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC
Q 001176 598 NRFLAAG-D----EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 598 ~~l~~~~-~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
+.++..+ . ...|+.-++..+.....+...... ...+.|||+|++++....
T Consensus 293 ~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 293 NRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 7776543 3 335666677633444555544332 158999999998876543
No 319
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.41 E-value=2.1e-06 Score=83.42 Aligned_cols=198 Identities=17% Similarity=0.168 Sum_probs=118.3
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEEcccce------------eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEE
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE------------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~------------~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iw 948 (1132)
++.+.|+. ...|+++..++.+......++. ....+..|.++-.+=+.+--++.+++++.||.+.+.
T Consensus 39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 44455543 3455555555554444333222 223333344433333334456789999999999999
Q ss_pred ECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeC------CeEEEEeCCCCceeecCCCCCCCCCeEEEEE
Q 001176 949 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE------SQISVYDSKLECSRSWSPKDALPAPISSAIY 1022 (1132)
Q Consensus 949 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d------~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~ 1022 (1132)
+.+.-..... +....+ ..-...+.-..+.++.++.- +..+.|+... ...+.....-...|++++-
T Consensus 117 s~~~~~~~~~---~i~~~~----~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p--~~t~~~~~~~~~~v~~l~~ 187 (319)
T KOG4714|consen 117 STDKDLALMS---RIPSIH----SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDP--IKTLIPSKKALDAVTALCS 187 (319)
T ss_pred echHHHhhhh---hccccc----ccccccceeecccEEecCCcceEeeccceeeecccc--cccccccccccccchhhhC
Confidence 9876221111 111111 11122233344555555332 3345555522 2222221111345899988
Q ss_pred ccCCC-EEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1023 SCDGL-LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1023 s~dg~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
.|..+ .+++|+.||.+.+||++...... .....|...+..+-|+|.++..|++++.||.+..||.++
T Consensus 188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p~----------S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 188 HPAQQHLVCCGTDDGIVGLWDARNVAMPV----------SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CcccccEEEEecCCCeEEEEEcccccchH----------HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 88655 67788999999999999875433 333577888899999999999999999999999999986
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.40 E-value=8.5e-05 Score=88.06 Aligned_cols=278 Identities=11% Similarity=0.171 Sum_probs=159.1
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
+.|.++.|.-++.. ++.+..+|.|.+-|..+..... ...-.+.|.+++||||++.++..
T Consensus 69 ~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLALI 127 (1265)
T ss_pred cceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEEE
Confidence 58999999999985 6667788999999887765432 23456789999999999999999
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecc---cCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEecCCCCCeEE
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDAH---VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYS 499 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~h---~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~ 499 (1132)
+..+++.+-+.. -..+.. ..+... .+..-.+-|-....+ +-|+ .|....-+.... +.+... ...+.=++
T Consensus 128 T~~~tll~mT~~-f~~i~E-~~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~-~~~~~~~~ 200 (1265)
T KOG1920|consen 128 TGRQTLLFMTKD-FEPIAE-KPLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQI-EQDDHKTS 200 (1265)
T ss_pred eCCcEEEEEecc-ccchhc-cccccccccccccceeccccccee---eecc-hhhhcccccccccccccch-hhccCCce
Confidence 888877765432 111110 011000 111222333222221 1111 111111110000 000000 11222345
Q ss_pred EEeeccCCccEEEEE-----ecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-
Q 001176 500 VCPHHKESIQFIFST-----AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE- 573 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~-----s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~- 573 (1132)
|+| .+||.++++. ...+.|++||.+ +.....-....+.-.+++|-|.|..+++..... .++.|.++.-+.
T Consensus 201 IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~-sd~~IvffErNGL 276 (1265)
T KOG1920|consen 201 ISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKT-SDSDIVFFERNGL 276 (1265)
T ss_pred EEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecC-CCCcEEEEecCCc
Confidence 677 4566888773 333789999876 322222223334556899999999998876544 355788887542
Q ss_pred --CceeeeeccccCCceEEEEEeCCCCEEEE---EEcCCeEEEEECCCCee--EEEEeCCCCCCCcceEEEcCC-CCEEE
Q 001176 574 --GAIKRTYSGFRKRSLGVVQFDTTRNRFLA---AGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNKE-GSLLA 645 (1132)
Q Consensus 574 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~-~~~l~ 645 (1132)
|+....+..... .+..++|+.++..|++ ......|++|-..+... .+.+..... .-+.|+|. ...|.
T Consensus 277 ~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L~ 351 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTLH 351 (1265)
T ss_pred cccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeEE
Confidence 222222222222 3888999999998888 44666699999887553 333333322 22788883 33444
Q ss_pred EEeCCCcEEEEEc
Q 001176 646 VTTSDNGIKILAN 658 (1132)
Q Consensus 646 ~~~~dg~i~iw~~ 658 (1132)
+-..+|...+++.
T Consensus 352 v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 352 VLRESGQRLVRDF 364 (1265)
T ss_pred EEecCCcEEEEEE
Confidence 4446776666654
No 321
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.39 E-value=4.8e-06 Score=94.78 Aligned_cols=181 Identities=17% Similarity=0.183 Sum_probs=133.8
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeE
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 926 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 926 (1132)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.++++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 455666666 788999999999888887766666776665 6689999999999999999999999999999999976
Q ss_pred EEEcCCCCEEEEEcC---------CCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC--CcEEEEEeCCeEE
Q 001176 927 LAFSPTLNALVSSGA---------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND--QTHLLVVHESQIS 995 (1132)
Q Consensus 927 l~~spdg~~l~s~~~---------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~~~~d~~v~ 995 (1132)
+.. .|+.|+|||. |.-|++||+..-+.+. +++...+ ..-+.|.|. .+.++++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence 655 7899999984 5568999998755433 2222222 234566664 3344447889999
Q ss_pred EEeC--CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001176 996 VYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042 (1132)
Q Consensus 996 vwd~--~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd 1042 (1132)
+-|. -.+........+..+..++++.+|++|..+|.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8885 1222111111122256699999999999999999999999998
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.37 E-value=1e-06 Score=62.04 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=37.1
Q ss_pred ceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001176 911 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949 (1132)
Q Consensus 911 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd 949 (1132)
++++.++.+|.+.|++|+|+|++.+|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.37 E-value=0.00075 Score=80.41 Aligned_cols=275 Identities=14% Similarity=0.145 Sum_probs=152.8
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeee
Q 001176 587 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 666 (1132)
Q Consensus 587 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1132)
.|.++.|..+.+.++.+...|.|.+-|..+......-... ..|.+++|+||+..++..+..+++.+-...-..-..+
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 6888899999999999999999999988776543332222 3689999999999999999988887654211100001
Q ss_pred eccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceee
Q 001176 667 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 746 (1132)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 746 (1132)
.+ + +.....++++-.|+...-.-
T Consensus 147 ~L--~-------------------------------------------------------~d~~~~sk~v~VGwGrkeTq 169 (1265)
T KOG1920|consen 147 PL--D-------------------------------------------------------ADDERKSKFVNVGWGRKETQ 169 (1265)
T ss_pred cc--c-------------------------------------------------------cccccccccceeccccccee
Confidence 11 0 00011112222222211111
Q ss_pred eecCCCCCCCcceEE--e-cCCcccccceEEEEEecCCceEEeec-----ccceeEEEeeccccCCCCCccccccccccc
Q 001176 747 WRIPDISDPSQIKAL--R-LPDSIAASKVVRLIYTNSGLSLLALA-----SNAVHKLWKWQRTERNPSGKATANVAPQLW 818 (1132)
Q Consensus 747 w~~~~~~~~~~~~~~--~-~~~~~~~~~i~~~~~s~~g~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~ 818 (1132)
+.-..+......... . .......+.=+++.|--||+++++.. ....++|||.+
T Consensus 170 frgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE------------------- 230 (1265)
T KOG1920|consen 170 FRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE------------------- 230 (1265)
T ss_pred eecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-------------------
Confidence 111110000000000 0 00001223345688999999887732 22678888653
Q ss_pred cCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee----CCeEEEEECCCC---eEEEEeeCCCCCeEEEEEeCCCC
Q 001176 819 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GGKVSLFNMMTF---KVMTMFMSPPPAATFLAFHPQDN 891 (1132)
Q Consensus 819 ~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s----dg~i~vwd~~~~---~~~~~~~~~~~~i~~l~~sp~~~ 891 (1132)
|.+.....+. .+.-.+++|-|.|..+|+.. |+.|.+|.-... +....+.....+|..++|+. ++
T Consensus 231 ----g~Lns~se~~----~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~s 301 (1265)
T KOG1920|consen 231 ----GALNSTSEPV----EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NS 301 (1265)
T ss_pred ----chhhcccCcc----cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CC
Confidence 2211111111 33345799999999999874 567999986532 22222333344589999999 89
Q ss_pred CeEEE---EeCCCcEEEEEcccce--eeeeeccccCCeeEEEEcCCC-CEEEEEcCCCcEEEEECC
Q 001176 892 NIIAI---GMEDSSVQIYNVRVDE--VKTKLKGHQNRITGLAFSPTL-NALVSSGADAQLCMWSID 951 (1132)
Q Consensus 892 ~~las---g~~dg~v~iwd~~~~~--~~~~l~~h~~~V~~l~~spdg-~~l~s~~~D~~i~iwd~~ 951 (1132)
.+||+ ......|++|-+.+.. +...+.-..... +.|+|-. ..|..-..+|...++++.
T Consensus 302 diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred CceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 99998 4444559999887643 222232222222 7888843 233333356666666554
No 324
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=1.2e-06 Score=88.45 Aligned_cols=163 Identities=13% Similarity=0.199 Sum_probs=122.6
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC----Cce
Q 001176 456 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL----GSR 531 (1132)
Q Consensus 456 v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~----~~~ 531 (1132)
++|+-+-.... ++.+.+..|-+-|+++|... .|. ....|.++.|.... +++..|...|.|..+|++.. ...
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCcc
Confidence 36664433324 55566778889998887642 343 56778888887654 79999999999999999876 344
Q ss_pred EEecCCCCeEEEEEEcC-CCCEEEEEecCCCCCCeEEEEeCCCCce---eeeeccccCCc-eEEEEEeCCCCEEEEEEcC
Q 001176 532 VDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRS-LGVVQFDTTRNRFLAAGDE 606 (1132)
Q Consensus 532 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d 606 (1132)
.....|+..|+++..-. ++++|++.+. ++.|.+||.+.-++ +.++.||.... ..-+...+....++++|.|
T Consensus 292 a~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 292 AQRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred eEEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 45556888899988777 6777777654 78899999987666 89999986522 2224456677889999999
Q ss_pred CeEEEEECCCCeeEEEEeCCC
Q 001176 607 FQIKFWDMDNMNMLTTVDADG 627 (1132)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~ 627 (1132)
...|||.++.+.++.+++...
T Consensus 368 cytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eEEEEEecccCceeeccCCCC
Confidence 999999999999999987553
No 325
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.37 E-value=0.013 Score=68.74 Aligned_cols=229 Identities=11% Similarity=0.100 Sum_probs=130.4
Q ss_pred CCEEEEeeCCeEEEEECCCCeE--EEEeeCCCCCeEEEEEeCCCCCeEEEEeC-----------C---CcEEEEEcccce
Q 001176 849 DSYVMSASGGKVSLFNMMTFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGME-----------D---SSVQIYNVRVDE 912 (1132)
Q Consensus 849 g~~la~~sdg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~~~~~lasg~~-----------d---g~v~iwd~~~~~ 912 (1132)
+..++.+..+.+++.-++.-+. +++.. -......+++.+ ....+++.+. . ..++++|-.+.+
T Consensus 684 ~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~ 761 (1096)
T KOG1897|consen 684 PDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE 761 (1096)
T ss_pred CceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence 3466777777777766654322 23332 223455666665 3444443321 1 246677766655
Q ss_pred eeeeecccc----CCeeEEEEcCC-CCEEEEEc----------CCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeE
Q 001176 913 VKTKLKGHQ----NRITGLAFSPT-LNALVSSG----------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 977 (1132)
Q Consensus 913 ~~~~l~~h~----~~V~~l~~spd-g~~l~s~~----------~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 977 (1132)
.+...+-.. ..|.+..|..| +.+++.|. ..|.|.++.+.....+....-....| ...
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G--------av~ 833 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG--------AVY 833 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc--------cee
Confidence 444322111 13455568777 56666664 24778888877633222211111111 122
Q ss_pred EECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCC--CcceecccCCC
Q 001176 978 QFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE--TLRFRCRIGPS 1055 (1132)
Q Consensus 978 ~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~--~~~~~~~~~~~ 1055 (1132)
+.---...++++-+..|++|+.+.+..... ...|..++..+...-.|..+++|..-++|.+.... .|...-.-.
T Consensus 834 aL~~fngkllA~In~~vrLye~t~~~eLr~--e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr-- 909 (1096)
T KOG1897|consen 834 ALVEFNGKLLAGINQSVRLYEWTTERELRI--ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR-- 909 (1096)
T ss_pred ehhhhCCeEEEecCcEEEEEEccccceehh--hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh--
Confidence 333334456667788999999955522222 23457889999999999999999988888775544 433432211
Q ss_pred ccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1056 AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1056 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
. -++.+.+++.+- +++.++.+..+|.+.+-...+..
T Consensus 910 D--------~~p~Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~ 945 (1096)
T KOG1897|consen 910 D--------YNPNWMTAVEIL--DDDTYLGAENSGNLFTVRKDSDA 945 (1096)
T ss_pred h--------hCccceeeEEEe--cCceEEeecccccEEEEEecCCC
Confidence 1 334566677666 45677777888988887776533
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=1.3e-05 Score=90.11 Aligned_cols=335 Identities=12% Similarity=0.116 Sum_probs=180.5
Q ss_pred EEEEEeCCCCEEEEEE----cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCccee
Q 001176 589 GVVQFDTTRNRFLAAG----DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL 664 (1132)
Q Consensus 589 ~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 664 (1132)
+..+|+|...++++++ ..|.|.|| .++|++.....-+- .+.+++|+|..-.|+.|-.-|.+.+|...+. +.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~-e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-ET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccce---ehhhhccChHHHHHhhccccceeEEEecCCc-ee
Confidence 3467899888888876 56788888 35666554443322 3678999999999999999999999987654 11
Q ss_pred eeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCce
Q 001176 665 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 744 (1132)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 744 (1132)
....
T Consensus 94 htv~---------------------------------------------------------------------------- 97 (1416)
T KOG3617|consen 94 HTVV---------------------------------------------------------------------------- 97 (1416)
T ss_pred eeec----------------------------------------------------------------------------
Confidence 1110
Q ss_pred eeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcC
Q 001176 745 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 824 (1132)
Q Consensus 745 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 824 (1132)
..|...|..+.||++|..++++..-|.+.+|.+.... . +.+..
T Consensus 98 ---------------------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g-----~-----------~q~~~ 140 (1416)
T KOG3617|consen 98 ---------------------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG-----E-----------IQTSN 140 (1416)
T ss_pred ---------------------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc-----c-----------cccch
Confidence 1166788999999999999999999999999875211 0 11111
Q ss_pred cccccCCCCCCCCCCeeEEEEeeCCC------EEEEee-CCeEE-EEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEE
Q 001176 825 LMTNDINESKPTEESAACIALSKNDS------YVMSAS-GGKVS-LFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 896 (1132)
Q Consensus 825 ~~~~~~~~~~h~~~~v~~~~~s~dg~------~la~~s-dg~i~-vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~las 896 (1132)
++...+.. .-...|..+++++. ..++.+ +..+- .++......-+... |.+ .| +|..+..
T Consensus 141 ~~~hel~~----~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-ksg-------v~-~g~~F~~ 207 (1416)
T KOG3617|consen 141 IMQHELND----QLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-KSG-------VP-KGTEFLF 207 (1416)
T ss_pred hhhhHhhc----eeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-ccC-------CC-CCcEEEE
Confidence 22222222 22334555666643 223333 33332 44433111111111 111 25 6777778
Q ss_pred EeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCcee
Q 001176 897 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 976 (1132)
Q Consensus 897 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 976 (1132)
++.+|+|+-.|- .|+.....+.. +. ..+-|.+-...++..-.+-.+.++-+.........+.....|....
T Consensus 208 ~~~~GtVyyvdq-~g~~~~V~k~d-S~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Gg------ 278 (1416)
T KOG3617|consen 208 AGKSGTVYYVDQ-NGRQRTVHKLD-SE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGG------ 278 (1416)
T ss_pred EcCCceEEEEcC-CCcEEEEEEcc-ch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCC------
Confidence 889999887773 44444443322 11 2344555444455454555555554432221111111112222110
Q ss_pred EEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCc
Q 001176 977 VQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA 1056 (1132)
Q Consensus 977 ~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~ 1056 (1132)
..|. ++++.... |...+.+ + +......+++++++..+..|+.|...|.+.+|--....++..-....
T Consensus 279 ----rqGg-iA~sEssG--vLr~~eK----y--g~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~ 345 (1416)
T KOG3617|consen 279 ----RQGG-IACSESSG--VLRKSEK----Y--GLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDV 345 (1416)
T ss_pred ----ccCc-cccccccc--cccCCcc----h--hhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcce
Confidence 0121 33321111 1100000 0 11115689999999999999999999999999644332222111111
Q ss_pred cccccccCCCCCCcEEEEeCC
Q 001176 1057 YIPTYAVSSNTAHPLVIAPHP 1077 (1132)
Q Consensus 1057 ~~~~~~~~~~~~~v~~~~~~p 1077 (1132)
+. ..-...-...+..+.|.|
T Consensus 346 w~-l~~~~e~~g~I~~i~Wg~ 365 (1416)
T KOG3617|consen 346 WT-LNGKRESLGKISLIRWGP 365 (1416)
T ss_pred EE-ecCchhhccceEEEEecc
Confidence 10 011112335678888988
No 327
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.34 E-value=0.00037 Score=73.20 Aligned_cols=205 Identities=19% Similarity=0.196 Sum_probs=125.2
Q ss_pred eEEEEeeCCCEEEEee---CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcc-cceeeee
Q 001176 841 ACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTK 916 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~ 916 (1132)
..+++|.||+++.+.. .-+|.|.|+..++.+.++..+. +..+- |.+.+-+.+.+.||++.-..+. .|+...+
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iy--P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIY--PSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEE--EEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEE--ecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 3467888999888876 4679999999999988887432 22222 2233557788899999988887 4554322
Q ss_pred ----eccccCCe-eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCC----CCCCCCceeEEECCCCcEEE
Q 001176 917 ----LKGHQNRI-TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR----QSPLVGETKVQFHNDQTHLL 987 (1132)
Q Consensus 917 ----l~~h~~~V-~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~dg~~l~ 987 (1132)
|..-.+++ ..-+++..+..++-.+-+|.|+--|+......-.......... .-.+..-..+++++..++|.
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 22222222 2334555556666677888888888876553222222211100 00013445688888776666
Q ss_pred EE-e---C-----C--eEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCC-EEEEE-ecCCcEEEEeCCCcceecccC
Q 001176 988 VV-H---E-----S--QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAG-FCDGAIGVFDAETLRFRCRIG 1053 (1132)
Q Consensus 988 ~~-~---d-----~--~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~-~las~-~~dg~i~vwd~~~~~~~~~~~ 1053 (1132)
+. + + + .|-+||+ +.+.+..+.. ..++.+|+.+.|.+ +|++. ..++.+.+||..+|+.++.+.
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 62 2 2 2 3667777 6777777654 34688999998877 55544 457999999999999998875
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.33 E-value=0.00015 Score=82.42 Aligned_cols=183 Identities=13% Similarity=0.027 Sum_probs=115.7
Q ss_pred EEEeeCCCEEEEee--CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCC----cEEEEEcccceeeee
Q 001176 843 IALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----SVQIYNVRVDEVKTK 916 (1132)
Q Consensus 843 ~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg----~v~iwd~~~~~~~~~ 916 (1132)
+=++|||+.+...+ .+.+.+.|.++.+...++.... ....++++| +++++.+.+.+. ++..-+..+...+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 34577998776555 5789999999988877766433 456789999 788887775332 233332222221111
Q ss_pred eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCC----cccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE--e
Q 001176 917 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK----WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--H 990 (1132)
Q Consensus 917 l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~ 990 (1132)
+.-. .+ -++.++|++... .++.|.+.|..+ +.... ..+. .+ .....+.+||||++++++ -
T Consensus 276 fni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~-~yIP--VG-----KsPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 276 FNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALT-RYVP--VP-----KNPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred EchH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceE-EEEE--CC-----CCccceEECCCCCEEEEeCCC
Confidence 1100 01 133457776654 367899999887 22111 1122 22 235789999999999995 4
Q ss_pred CCeEEEEeC-CCCc------------eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 991 ESQISVYDS-KLEC------------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 991 d~~v~vwd~-~~~~------------~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
+.+|.|+|+ +.+. ...... ...-...+|.++|....+-..|..|..||+.+
T Consensus 342 S~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 342 SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 789999999 3332 222222 22334578999999888889999999999986
No 329
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.32 E-value=2.7e-06 Score=81.17 Aligned_cols=133 Identities=20% Similarity=0.217 Sum_probs=98.9
Q ss_pred HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001176 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQ 117 (1132)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1132)
...++++|++|+++.|+..+......-... ...+.|.|+.|+|+|+|..++..+|+.+.|+.+.|......++++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 467899999999999999998764332222 2348999999999999999999999999999997774446788999999
Q ss_pred hhcccCccc--hhhhcccCCchhHHHHHHHHHHhhcccCcccccccCCCCCc-chHHHHHHHHHHHH
Q 001176 118 LLTLDNFRQ--NEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFK-SSRLRTLINQSLNW 181 (1132)
Q Consensus 118 l~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~q~~~~ 181 (1132)
+|...+..+ ...+...-+ ...|+.+.+.+.+.+-...- +| .+.|..++++....
T Consensus 84 lL~~~~~~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~ 140 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLS-PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSA 140 (145)
T ss_pred HHHcCCcccccchHHHHHhC-hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHH
Confidence 998876654 233333323 37789999988887654221 33 45688888776543
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.32 E-value=7.8e-05 Score=83.34 Aligned_cols=284 Identities=12% Similarity=0.060 Sum_probs=162.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+...|.--+++..++ +++.|+.-|.+++|+-.+++....+ ..+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence 445666667777787 6999999999999999888765421 223455677788999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeee--e-eecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe----EEEEecCCC
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHL--E-IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR----KQYTFEGHE 494 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~--~-l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~----~~~~~~~h~ 494 (1132)
.|+..|.|.++-+..+....... . -..|...|+|++|++|+. .+++|...|.|..-.+.... ..+.+-...
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 99999999999988744322111 1 123778999999999999 79999999999998877621 112333345
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CCC-eEEEEEEcCC----CCEEEEEecCCCCCCeEEE
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGN-WCTMMAYSAD----GTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~-~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~ 568 (1132)
..|..+... ++.+|++.. -+. .+++.+...-...-+. ..+ .-...+|-|. .+-.+.|+.. -.++
T Consensus 171 s~IVQlD~~---q~~LLVStl-~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRP-----G~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QSYLLVSTL-TRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARP-----GLRL 240 (726)
T ss_pred cceEEeecc---cceehHhhh-hhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecC-----CCce
Confidence 666666543 213333332 222 2333332221110000 111 1223344332 3334444432 2678
Q ss_pred EeCC-CCceeeeeccccC----------------C------------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee
Q 001176 569 WNES-EGAIKRTYSGFRK----------------R------------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619 (1132)
Q Consensus 569 wd~~-~~~~~~~~~~~~~----------------~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1132)
|..+ .|+.+++..-... . ....+.+- .+..+++-++-| |+|+|.++.+.
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l-~~~~vLa~te~G-iyv~d~~~~~v 318 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTL-HSDRVLAWTEVG-IYVFDSNNSQV 318 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEe-ecceEEEeecce-EEEEEeccceE
Confidence 8765 2444443221100 0 00011111 123445544444 88888877665
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcce
Q 001176 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVR 663 (1132)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 663 (1132)
+.-.... ..|..+ +..|+-|++-..|+.+++..+.+..+
T Consensus 319 ~l~se~~---~DI~dV--s~~~neiFvL~~d~~l~~~sv~s~qr 357 (726)
T KOG3621|consen 319 YLWSEGG---HDILDV--SHCGNEIFVLNLDRGLKVESVASRQR 357 (726)
T ss_pred EEeecCC---CceeEE--eecCceEEEEecCCceeEEEeehhHH
Confidence 5443222 134333 34466677777788788877766543
No 331
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.26 E-value=3.4e-06 Score=59.31 Aligned_cols=39 Identities=23% Similarity=0.494 Sum_probs=36.9
Q ss_pred CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEE
Q 001176 868 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 907 (1132)
Q Consensus 868 ~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd 907 (1132)
++++.++.+|.+.|++++|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467899999999999999999 899999999999999997
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.00014 Score=82.99 Aligned_cols=198 Identities=16% Similarity=0.171 Sum_probs=136.3
Q ss_pred EEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCC-eEEEEEeCCCCCeEEEEeCCC-----cEEEEEcccc----
Q 001176 843 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMEDS-----SVQIYNVRVD---- 911 (1132)
Q Consensus 843 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~---- 911 (1132)
-++++.+..++.|+ +|.|.+.+- +.+.++.+..+... |+.+.... +..+|++.+.|+ .|+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 45678889999998 899988884 45666788887777 55555544 556888777665 4899998743
Q ss_pred --eee--eeecc-----ccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC
Q 001176 912 --EVK--TKLKG-----HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 982 (1132)
Q Consensus 912 --~~~--~~l~~-----h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 982 (1132)
+++ .++.. ...++.+++.|.+-+.+|.|-.+|.|..+.-+--.....+..-...+ ..+|+.+++-.|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~----~~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG----KEPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC----CCCceeeEEecC
Confidence 223 12222 24568899999999999999999999988654322222212112222 268999999999
Q ss_pred CcE-EEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcce
Q 001176 983 QTH-LLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1048 (1132)
Q Consensus 983 g~~-l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~ 1048 (1132)
++- ++++.-..|.+|.++++. ........|+.++.+-.|++.-.-+++++ +..+.+|+......
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGP 247 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcce
Confidence 987 555778899999997665 22222355688899998887554355444 46799999985444
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=9.5e-05 Score=84.38 Aligned_cols=205 Identities=14% Similarity=0.121 Sum_probs=133.4
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCC-eeEEEEcCCCCEEEEEcCCCc-----EEEEECCCccccc-
Q 001176 885 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALVSSGADAQ-----LCMWSIDKWEKLK- 957 (1132)
Q Consensus 885 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s~~~D~~-----i~iwd~~~~~~~~- 957 (1132)
+|++ ++..+|.|+.+|.|.+++- .-+.+..++++... |+.+-...+..+|++.+.|+. |++|+++.-+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4567 7789999999999988873 34555778888777 544444444478999887754 9999997654333
Q ss_pred ceee--eCCCCCCCC--CCCceeEEECCCCcEEEEE-eCCeEEEEeC-----CCCceeecCCCCCCCCCeEEEEEccCCC
Q 001176 958 SRFI--QAPAGRQSP--LVGETKVQFHNDQTHLLVV-HESQISVYDS-----KLECSRSWSPKDALPAPISSAIYSCDGL 1027 (1132)
Q Consensus 958 ~~~~--~~~~~~~~~--~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~-----~~~~~~~~~~~~~h~~~i~~i~~s~dg~ 1027 (1132)
..++ ....++..+ ..+++.++.|.+-+.+|+| .+|.|..+.- .+...... +.-..+||.++|-.|++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~---~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS---HRGKEPITGLALRSDGK 184 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee---ccCCCCceeeEEecCCc
Confidence 2233 011111111 3678899999998889987 6888988865 12221211 22278999999999998
Q ss_pred EEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccccC
Q 001176 1028 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1106 (1132)
Q Consensus 1028 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~~ 1106 (1132)
-++.+.....|.+|.+. |+.... .+...|+...-|.++++..+.+++ + .+..|.+|+...-++-|..
T Consensus 185 s~lFv~Tt~~V~~y~l~-gr~p~~---------~~ld~~G~~lnCss~~~~t~qfIc-a-~~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLS-GRTPSL---------KVLDNNGISLNCSSFSDGTYQFIC-A-GSEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred eeEEEEecceeEEEEec-CCCcce---------eeeccCCccceeeecCCCCccEEE-e-cCceEEEEcCCCcceeeee
Confidence 74444456789999998 443111 012366777778888874443444 3 3667888888765554444
No 334
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.20 E-value=0.00048 Score=77.03 Aligned_cols=296 Identities=13% Similarity=0.087 Sum_probs=153.6
Q ss_pred cCCCCEEEEEecC-----CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 001176 547 SADGTRLFSCGTS-----KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 621 (1132)
Q Consensus 547 s~~~~~l~~~~~~-----~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1132)
|||+++++..... .+..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|++++..++...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 5788877764320 01245689999999776554444 22677899999999998885 6789999988874443
Q ss_pred EEeCCCC----------------CCCcceEEEcCCCCEEEEEeC-CCcEEEEEcCC---cce---eeeeccccccccccC
Q 001176 622 TVDADGG----------------LPASPRLRFNKEGSLLAVTTS-DNGIKILANSD---GVR---LLRMLEGRAMDKNRC 678 (1132)
Q Consensus 622 ~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~---~~~---~~~~~~~~~~~~~~~ 678 (1132)
+...+. ...-..+.|||||++|+.... +..|..+.+.. ... ....++
T Consensus 78 -lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~--------- 147 (353)
T PF00930_consen 78 -LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIR--------- 147 (353)
T ss_dssp -SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE---------
T ss_pred -eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccc---------
Confidence 222220 123467899999999987754 34444443321 100 000000
Q ss_pred CCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccccccc---CceeeeecCCCCCC
Q 001176 679 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV---DKIKSWRIPDISDP 755 (1132)
Q Consensus 679 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~w~~~~~~~~ 755 (1132)
+-..|.. -.+.++++.+....
T Consensus 148 --------------------------------------------------------YPk~G~~np~v~l~v~~~~~~~~~ 171 (353)
T PF00930_consen 148 --------------------------------------------------------YPKAGDPNPRVSLFVVDLASGKTT 171 (353)
T ss_dssp ----------------------------------------------------------BTTS---EEEEEEEESSSTCCC
T ss_pred --------------------------------------------------------cCCCCCcCCceEEEEEECCCCcEE
Confidence 0000110 23445565543221
Q ss_pred CcceEEecCC--cccccceEEEEEecCCceEEeeccc---ceeEEEeeccccCCCCCccccccccccccCCCcCc---cc
Q 001176 756 SQIKALRLPD--SIAASKVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL---MT 827 (1132)
Q Consensus 756 ~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~ 827 (1132)
.+..+. ......+..+.|.++++.++....+ ..+.+..+ |..++.. ..
T Consensus 172 ----~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~--------------------d~~tg~~~~~~~ 227 (353)
T PF00930_consen 172 ----ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLC--------------------DASTGETRVVLE 227 (353)
T ss_dssp ----EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEE--------------------EECTTTCEEEEE
T ss_pred ----EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEE--------------------ECCCCceeEEEE
Confidence 222221 2245678899999999855443332 22222222 2222211 11
Q ss_pred ccCCCCCCCCCCeeEEEEe-eCCCEEEEee--CC--eEEEEECCCCeEEEEeeCCCCCeEE-EEEeCCCCCeEEEEeCCC
Q 001176 828 NDINESKPTEESAACIALS-KNDSYVMSAS--GG--KVSLFNMMTFKVMTMFMSPPPAATF-LAFHPQDNNIIAIGMEDS 901 (1132)
Q Consensus 828 ~~~~~~~h~~~~v~~~~~s-~dg~~la~~s--dg--~i~vwd~~~~~~~~~~~~~~~~i~~-l~~sp~~~~~lasg~~dg 901 (1132)
....+ - -..-....+. +++..++..+ +| .|.+++..++.. ..+....-.|+. +.+++.++.+..++..++
T Consensus 228 e~~~~--W-v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~ 303 (353)
T PF00930_consen 228 ETSDG--W-VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDN 303 (353)
T ss_dssp EESSS--S-SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGG
T ss_pred ecCCc--c-eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCC
Confidence 00000 0 1112345554 7777666555 54 477788776664 355545556754 678884455555666533
Q ss_pred ----cEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEE
Q 001176 902 ----SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 939 (1132)
Q Consensus 902 ----~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~ 939 (1132)
.|+.-++.++..+..+....+.-..+.|||+|++++-.
T Consensus 304 p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 304 PGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp TTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 56556666233445555443333689999999987744
No 335
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=8.5e-05 Score=77.19 Aligned_cols=249 Identities=12% Similarity=0.144 Sum_probs=139.5
Q ss_pred EEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 337 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 337 ~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
...+. +...|..++|||..+-++..++.++.|.|.|+++...... +..+ ..+++++|.-
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl 245 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL 245 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence 33444 7789999999998876788999999999999998876653 2334 7899999998
Q ss_pred CCC-eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEe------cCCCcEEEEEEcCCCcEEEEECCC--CeE
Q 001176 416 DGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA------HPNKQLCIVTCGDDKMIKVWDVVA--GRK 486 (1132)
Q Consensus 416 dg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s------~d~~~~~l~s~~~dg~v~vwd~~~--~~~ 486 (1132)
|.. +|..|..+|.|.|||++..+.......-.-...+|..++.- +-|. +++..+. .+..|.+.- +..
T Consensus 246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt--~l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALT--VLQFYEIVFSAECL 321 (463)
T ss_pred CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeeh--hhhhhhhhccccCC
Confidence 765 67777789999999998765433211111123345444433 2333 3333332 245565432 111
Q ss_pred EEEec-CCCCCeEEEEeeccCCccEEEEEecCCe------EEE-EEcCCCCceEE-ecCC-CC------eEEEEEEcCCC
Q 001176 487 QYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGK------IKA-WLYDYLGSRVD-YDAP-GN------WCTMMAYSADG 550 (1132)
Q Consensus 487 ~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~------i~~-wd~~~~~~~~~-~~~~-~~------~v~~~~~s~~~ 550 (1132)
...++ +..+...++..++..+ ..|++.-.+-. |-. -|..++..+.. ...+ ++ .-..+.-.++.
T Consensus 322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 12121 1234455555554433 34444322110 000 01111111110 0001 11 11122234566
Q ss_pred CEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEe-CCCCEEEEEEcCCeEEEEECC
Q 001176 551 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGDEFQIKFWDMD 615 (1132)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~ 615 (1132)
++++..+ +..+.+.+||+.+++.++++.... +|..++.. -++.-++..=.|..++||..+
T Consensus 401 n~iv~~g---d~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 401 NYIVVVG---DSTNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cEEEEec---CCcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhheecceEEEEecC
Confidence 6666554 346789999999999999987653 56655543 234333333357788888654
No 336
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.14 E-value=0.011 Score=63.64 Aligned_cols=299 Identities=14% Similarity=0.117 Sum_probs=144.6
Q ss_pred CCcccceEEeecCCCCeeE------EEEccCCCeEEEEEcCCCc--EEEEecCCCccccccceeeeeccccccccccccc
Q 001176 330 DDLTKTVVRTLNQGSNVMS------MDFHPQQQTILLVGTNVGD--ISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 401 (1132)
Q Consensus 330 d~~~~~~~~~l~h~~~V~~------~~~spdg~~lla~g~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1132)
|..++..+..|.+...... =+|.+||++||+++..||. +.+-|+.+++..+ |
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------L 75 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------L 75 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------------------
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------C
Confidence 4455666666654333222 3678999989998877765 5555677776554 2
Q ss_pred CCCC-cCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEe--cCCCcEEEEEEc-------
Q 001176 402 NDAA-ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA--HPNKQLCIVTCG------- 471 (1132)
Q Consensus 402 ~~h~-~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s--~d~~~~~l~s~~------- 471 (1132)
.... .......++|+++.++-......|+-.|+++.+.. .. +......+-...|. .|+. .++..-
T Consensus 76 Tdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~-~v--y~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~ 150 (386)
T PF14583_consen 76 TDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER-VV--YEVPDDWKGYGTWVANSDCT--KLVGIEISREDWK 150 (386)
T ss_dssp --SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE-EE--EE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG--
T ss_pred ccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEE-EE--EECCcccccccceeeCCCcc--EEEEEEEeehhcc
Confidence 2222 22335677898888876656678888899886643 22 33344555455664 3454 333221
Q ss_pred ---------------CCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEec---CC-eEEEEEcCCCCceE
Q 001176 472 ---------------DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DG-KIKAWLYDYLGSRV 532 (1132)
Q Consensus 472 ---------------~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg-~i~~wd~~~~~~~~ 532 (1132)
..+.|.--|+.+|+....+. -...+.-+.++|..+ .+|+-|-. +. .-|+|-+++.+...
T Consensus 151 ~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~ 228 (386)
T PF14583_consen 151 PLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNV 228 (386)
T ss_dssp ---SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---
T ss_pred CccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcc
Confidence 11245556777777544443 456677888888753 34444322 22 13667665543322
Q ss_pred -Eec--CCCCeEEEEEEcCCCCEEEEEec-CCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC--
Q 001176 533 -DYD--APGNWCTMMAYSADGTRLFSCGT-SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-- 606 (1132)
Q Consensus 533 -~~~--~~~~~v~~~~~s~~~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 606 (1132)
.+. .....+..=-|.|||..+.-.+. .+..+..|.-+|+.+++........ .......++||++++-=|.|
T Consensus 229 ~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p 305 (386)
T PF14583_consen 229 KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAP 305 (386)
T ss_dssp EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE----
T ss_pred eeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCC
Confidence 221 12335666679999998776443 3333567888888887654332221 23345567888877663332
Q ss_pred --------------CeEEEEECCCCeeEEEEeCC--------CCCCCcceEEEcCCCCEEEEEeC-CCcEEEEEc
Q 001176 607 --------------FQIKFWDMDNMNMLTTVDAD--------GGLPASPRLRFNKEGSLLAVTTS-DNGIKILAN 658 (1132)
Q Consensus 607 --------------g~i~iwd~~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~ 658 (1132)
--|+++++..++........ .....-....|+|||+.++..++ .|...||-+
T Consensus 306 ~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 306 VDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ---------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 15677888876654322211 00112256899999998776654 676666644
No 337
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=6.1e-05 Score=85.32 Aligned_cols=188 Identities=14% Similarity=0.127 Sum_probs=128.1
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccccc
Q 001176 878 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 957 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~ 957 (1132)
...++|++++. ++++.|+.+|.|++++... .. .+...|+.. .-+|.+++||+.||+|.|-.+.+.+...
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 35678888854 7999999999999999754 33 444446554 5689999999999999999988766433
Q ss_pred ceeeeCCCCCCCCCCCceeEEECCC-----CcEEEEEeCCeEEEEeC--CCCceeecCCCCCCCCCeEEEEEccCCCEEE
Q 001176 958 SRFIQAPAGRQSPLVGETKVQFHND-----QTHLLVVHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVY 1030 (1132)
Q Consensus 958 ~~~~~~~~~~~~~~~~v~~~~~s~d-----g~~l~~~~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~i~~s~dg~~la 1030 (1132)
..-.+ .++..++++|| .+.+++|+...+.++.- -++.... ..+.-.++|.++.| .|.++|
T Consensus 108 ~~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v--~l~~~eG~I~~i~W--~g~lIA 174 (846)
T KOG2066|consen 108 QYDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSV--VLSEGEGPIHSIKW--RGNLIA 174 (846)
T ss_pred eEecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccce--eeecCccceEEEEe--cCcEEE
Confidence 22211 46789999998 45677755444777765 1111111 11222789999999 566777
Q ss_pred EEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1031 AGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1031 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
=++.+ -|+|||+.+++.+..+.+++..+ .....+-.+.|.+ ...|+.| ---+|++-.+.
T Consensus 175 Wand~-Gv~vyd~~~~~~l~~i~~p~~~~-----R~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 175 WANDD-GVKVYDTPTRQRLTNIPPPSQSV-----RPELFPPHLHWQD--EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred EecCC-CcEEEeccccceeeccCCCCCCC-----CcccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence 77654 59999999999999888665222 2234555688886 3455544 44566777666
No 338
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.00037 Score=79.18 Aligned_cols=185 Identities=15% Similarity=0.165 Sum_probs=123.9
Q ss_pred eEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCE
Q 001176 772 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 851 (1132)
Q Consensus 772 i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~ 851 (1132)
+.+.+++ ++.++-|+.+|.+++++.+.. +.. ... | ... ..+|.+
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------~~~--~~~--~-s~~------~~~Gey 85 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------PKT--NFD--H-SSS------ILEGEY 85 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCc-----------------------ccc--ccc--c-ccc------ccCCce
Confidence 3444443 467888999999999875321 100 000 2 111 568999
Q ss_pred EEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCC----CCCeEEEEeCCCcEEEEEccc--ceeeeeeccccCCe
Q 001176 852 VMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ----DNNIIAIGMEDSSVQIYNVRV--DEVKTKLKGHQNRI 924 (1132)
Q Consensus 852 la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~----~~~~lasg~~dg~v~iwd~~~--~~~~~~l~~h~~~V 924 (1132)
+++|+ ||+|.|..+.+.+...++. ...++.+++++|+ ..+.+++|+.-| +.++.-.= .+.-..+..-.++|
T Consensus 86 ~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPI 163 (846)
T ss_pred EEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccce
Confidence 99999 8999999998888776665 4567999999993 256788898888 87775321 11112355567889
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCC
Q 001176 925 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK 1000 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~ 1000 (1132)
.++.| .|+++|-++.+| |++||+.+...+.. +........+......+.|.++.+ |++|-..+|++..+.
T Consensus 164 ~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~--i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 164 HSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTN--IPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEe--cCcEEEEecCCC-cEEEeccccceeec--cCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 99999 588999999888 99999998765432 222222222223455778877764 556666677777774
No 339
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.05 E-value=6.1e-06 Score=51.16 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHc
Q 001176 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (1132)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Es 32 (1132)
+++.+||++||.++||.+||++|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 340
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.03 E-value=0.0001 Score=84.35 Aligned_cols=185 Identities=12% Similarity=0.112 Sum_probs=140.6
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEE
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 545 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1132)
.++.|+....+...|+++++..+...-....|.-++. ++.++.+|...|+|.+-|.++.+.+..+..|.+.+..+
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf- 223 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF- 223 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceeee-
Confidence 5777887888899999998887766555555776654 44799999999999999999999999999999988654
Q ss_pred EcCCCCEEEEEecCCC-----CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCC-Ce
Q 001176 546 YSADGTRLFSCGTSKE-----GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDN-MN 618 (1132)
Q Consensus 546 ~s~~~~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~ 618 (1132)
.-.|+.|++||.+.. -|..|.+||++..+.+.-+.-+.+. .-+.|.|.- ..+++++..|...+-|..+ ++
T Consensus 224 -Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P--~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 -DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP--QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred -eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc--hhhhhcccccceEEEEecccceeeccccccCC
Confidence 457899999987543 2678999999988776666555442 336677764 5678888899999988432 12
Q ss_pred e-EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 619 M-LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 619 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
+ ......+.....+..+.++++|+.++.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 222222222335889999999999999999999999973
No 341
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.01 E-value=0.006 Score=71.35 Aligned_cols=110 Identities=12% Similarity=0.056 Sum_probs=68.0
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCC------eEE--EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeee
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN------WCT--MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 580 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~------~v~--~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1132)
..++.++.++.+.-.|..+++.+........ .+. .++. .++..++.++ .++.|+.+|.++|+.+..+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~----~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGT----FDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEec----CCCeEEEEECCCCCEeeee
Confidence 4677777788888888888877766544322 000 1111 1224555554 3778999999999998877
Q ss_pred ccccCC--c--eE-EEEEeCCCCEEEEEE---------cCCeEEEEECCCCeeEEEEeC
Q 001176 581 SGFRKR--S--LG-VVQFDTTRNRFLAAG---------DEFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 581 ~~~~~~--~--v~-~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 625 (1132)
...... . +. ...+. +..++.++ .++.++.+|..+|+.+-....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 643320 0 11 11222 24455543 368899999999998887754
No 342
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.00 E-value=0.028 Score=65.90 Aligned_cols=110 Identities=9% Similarity=-0.001 Sum_probs=64.5
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCC-eEE----------EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCcee
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCT----------MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 577 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~----------~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1132)
..++.++.++.|.-.|..+++.+..+..... .+. .+++ .+..++.++ .++.+.-.|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t----~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGT----LDARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEc----CCCEEEEEECCCCCEE
Confidence 4666677777888888888777766543211 111 1122 123455554 3678999999999988
Q ss_pred eeeccccCCceEEEEEeC--CCCEEEEEE------cCCeEEEEECCCCeeEEEEe
Q 001176 578 RTYSGFRKRSLGVVQFDT--TRNRFLAAG------DEFQIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~ 624 (1132)
..........-..+.-+| .+..++++. .+|.|+.+|.++|+.+-...
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 776532110000011111 123455543 26899999999999887654
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.0006 Score=76.51 Aligned_cols=282 Identities=15% Similarity=0.096 Sum_probs=159.2
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
+...+.--++...+++++.|++.|.+.+|+-.. +........+ - .+.+..+.+|+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~----------------------~~~~~~~~~~--~-~~~~~~~~vs~ 86 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHT----------------------GEMRKLKNEG--A-TGITCVRSVSS 86 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCc----------------------hhhhcccccC--c-cceEEEEEecc
Confidence 445566667778899999999999999996532 2222111111 1 45667778899
Q ss_pred CCCEEEEee-CCeEEEEECCCCeE---EEE--e-eCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce----eeee
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKV---MTM--F-MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE----VKTK 916 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~---~~~--~-~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~----~~~~ 916 (1132)
+..++|.|+ .|.|.++-+..... +.. + ..|...|+|++|++ ++..+.+|...|.|..-.+.+.. ....
T Consensus 87 ~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~ 165 (726)
T KOG3621|consen 87 VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQE 165 (726)
T ss_pred hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccce
Confidence 999999888 68899988765321 111 1 23678899999999 99999999999999998887721 1122
Q ss_pred eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC----CcEEEEEeCC
Q 001176 917 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND----QTHLLVVHES 992 (1132)
Q Consensus 917 l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----g~~l~~~~d~ 992 (1132)
+..-.+.|..+... ++..|++...- ..+.+++.+... .+....... ......+|-|. .+-.+++..-
T Consensus 166 il~~ds~IVQlD~~-q~~LLVStl~r--~~Lc~tE~eti~---QIG~k~R~~---~~~~GACF~~g~~~~q~~~IycaRP 236 (726)
T KOG3621|consen 166 ILSEDSEIVQLDYL-QSYLLVSTLTR--CILCQTEAETIT---QIGKKPRKS---LIDFGACFFPGQCKAQKPQIYCARP 236 (726)
T ss_pred eeccCcceEEeecc-cceehHhhhhh--hheeecchhHHH---HhcCCCcCC---ccccceEEeeccccCCCceEEEecC
Confidence 33345667666654 44455544432 234444433210 111111000 11345556554 3444455555
Q ss_pred eEEEEeC--CCCceeecCCCCC----------CCC----------------CeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001176 993 QISVYDS--KLECSRSWSPKDA----------LPA----------------PISSAIYSCDGLLVYAGFCDGAIGVFDAE 1044 (1132)
Q Consensus 993 ~v~vwd~--~~~~~~~~~~~~~----------h~~----------------~i~~i~~s~dg~~las~~~dg~i~vwd~~ 1044 (1132)
..++|.. .|..+++....++ |.. ....+.+-.++ ++.+-++-| |+|+|.+
T Consensus 237 G~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~G-iyv~d~~ 314 (726)
T KOG3621|consen 237 GLRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEVG-IYVFDSN 314 (726)
T ss_pred CCceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecce-EEEEEec
Confidence 5677765 5554444222110 000 01111111222 344444444 8899998
Q ss_pred CcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1045 TLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
+-+.+..... +| .+..++- +++-|+.=..|+.+++..+.+.+
T Consensus 315 ~~~v~l~se~----------~~--DI~dVs~---~~neiFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 315 NSQVYLWSEG----------GH--DILDVSH---CGNEIFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred cceEEEeecC----------CC--ceeEEee---cCceEEEEecCCceeEEEeehhH
Confidence 7766543321 22 2333332 45666666777777777776655
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.97 E-value=0.0026 Score=70.85 Aligned_cols=252 Identities=16% Similarity=0.216 Sum_probs=135.1
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCcccc------------------ccceeeeeccccccc------ccccc
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA------------------HKPFKVWDISAASMP------LQNAL 400 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~------------------~~~~~~~~~~~~~~~------~~~~~ 400 (1132)
.|+++.|+++... |++|...|.|.||.+..++.-. ...-.+-|+.....+ .+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999875 8888899999999886543221 001223344332221 22334
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeec------ccCCEEEEEEec---CCC---cEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAH---PNK---QLCIV 468 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~------h~~~v~~v~~s~---d~~---~~~l~ 468 (1132)
+....++|++++.| |=-++|.|..+|.+.|.|+++...+... .+.. ....|+++.|+- ++. ..+++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 56678999999997 6669999999999999999877655432 2222 234688898872 222 24788
Q ss_pred EEcCCCcEEEEECCC---CeEE----EEecCCCCCeEEEEeeccCC-------------------ccEEEEEecCCeEEE
Q 001176 469 TCGDDKMIKVWDVVA---GRKQ----YTFEGHEAPVYSVCPHHKES-------------------IQFIFSTAIDGKIKA 522 (1132)
Q Consensus 469 s~~~dg~v~vwd~~~---~~~~----~~~~~h~~~v~~i~~~~~~~-------------------~~~l~s~s~dg~i~~ 522 (1132)
.|...|.+.+|.+.- +... .....+.++|..|..-.... -.-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 899999999997751 2221 12234667777776321111 023455566889999
Q ss_pred EEcCCCCceEEecCCCCeEEEEEEc-----CCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC---CceEEEEEe
Q 001176 523 WLYDYLGSRVDYDAPGNWCTMMAYS-----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK---RSLGVVQFD 594 (1132)
Q Consensus 523 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~ 594 (1132)
+...+.+.........-....+++. ..+..|++-. .+|.++++.+..-+.+........ ..+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888776655444222233344443 2344555554 488899999998888777665321 123335567
Q ss_pred CCCCEEEEE
Q 001176 595 TTRNRFLAA 603 (1132)
Q Consensus 595 ~~~~~l~~~ 603 (1132)
++|+.++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 777655444
No 345
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.96 E-value=0.0096 Score=64.17 Aligned_cols=227 Identities=11% Similarity=0.042 Sum_probs=112.2
Q ss_pred EEcCCCCeEEEEeC-CC--eEEEEEecCCCceeeeeeeeccc-CCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE
Q 001176 412 VWGPDGLMLGVAFS-KH--IVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 412 ~~spdg~~las~~~-dg--~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~ 487 (1132)
+|.+||+.|+.++. || .+.+.|+.+++..+ |..+. .......++|+++ .++-......|+-.|+++.+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--EE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcEE
Confidence 57889987766654 44 57777888865443 33222 2233567788887 4544445578899999998876
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEec----------------------CCeEEEEEcCCCCceEEecCCCCeEEEEE
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAI----------------------DGKIKAWLYDYLGSRVDYDAPGNWCTMMA 545 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~----------------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1132)
..+......+-...|..+.++..++..-. ...|..-|+.+++.... .....++..+.
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v-~~~~~wlgH~~ 194 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVV-FEDTDWLGHVQ 194 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEE-EEESS-EEEEE
T ss_pred EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEE-EecCccccCcc
Confidence 66666666676677766666666544321 12344446665444333 33566788899
Q ss_pred EcCCCCEEEEEecCCCC---CCeEEEEeCCCCceeeeecccc-CCceEEEEEeCCCCEEEEEE-----cCCeEEEEECCC
Q 001176 546 YSADGTRLFSCGTSKEG---ESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAG-----DEFQIKFWDMDN 616 (1132)
Q Consensus 546 ~s~~~~~l~~~~~~~~~---~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~ 616 (1132)
|+|....++.-+..+.- +.+|.+.+.. |...+.+..+. ...+..=.|.|||..+.--+ .+..|.-+|+.+
T Consensus 195 fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 195 FSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred cCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence 99976555443332222 2245444543 33333333222 22455567999998766532 345677888888
Q ss_pred CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 617 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
++........ .......++||++++-=+.|
T Consensus 274 ~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 274 GERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp --EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 7665444332 23456667899877654443
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.93 E-value=0.00068 Score=75.18 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=83.6
Q ss_pred CCCeeEEEEee-CCCEEEEe----e-CCe----EEEEECCCCeEEEE---eeCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 001176 837 EESAACIALSK-NDSYVMSA----S-GGK----VSLFNMMTFKVMTM---FMSPPPAATFLAFHPQDNNIIAIGMEDSSV 903 (1132)
Q Consensus 837 ~~~v~~~~~s~-dg~~la~~----s-dg~----i~vwd~~~~~~~~~---~~~~~~~i~~l~~sp~~~~~lasg~~dg~v 903 (1132)
+....++.||. +...+.+. + +|. -.+|+....+..+. --.....|.|.+++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 44557778876 34444443 2 333 56777765543222 123667899999999 88999999999999
Q ss_pred EEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcc
Q 001176 904 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 954 (1132)
Q Consensus 904 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~ 954 (1132)
.+||...+.. .+....-..+.++|+|+|..+++|+..|.+.+||+.-.-
T Consensus 284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 9999876632 232344567899999999999999999999999997643
No 347
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=0.00049 Score=76.29 Aligned_cols=131 Identities=12% Similarity=0.100 Sum_probs=90.4
Q ss_pred cccceEEeecCCCCeeEEEEccCCCeEEEEE----cCCCc----EEEEecCCCccccccceeeeecccccccccccccCC
Q 001176 332 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVG----TNVGD----ISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 332 ~~~~~~~~l~h~~~V~~~~~spdg~~lla~g----~~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
...+++..+.......++.||-...+.+.|- +.+|. -.+|++..++.... .+ .--.
T Consensus 194 ~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-sv---------------tsip 257 (545)
T PF11768_consen 194 GKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-SV---------------TSIP 257 (545)
T ss_pred CcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE-EE---------------EEEe
Confidence 3445566666566678889987444344432 23443 34566654432111 10 0124
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
....|.|++++|+.+.|+.|+.||.|++||...+... +..+.-..+.++|+|+|. ++++|+..|.+.+||+.-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeec
Confidence 6778999999999999999999999999998876322 222345678999999999 899999999999999865
Q ss_pred Ce
Q 001176 484 GR 485 (1132)
Q Consensus 484 ~~ 485 (1132)
..
T Consensus 331 sp 332 (545)
T PF11768_consen 331 SP 332 (545)
T ss_pred Cc
Confidence 43
No 348
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.89 E-value=0.0081 Score=66.98 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=138.0
Q ss_pred CeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCce----------------------------------------eeeeee
Q 001176 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------------------------------------RQHLEI 446 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~----------------------------------------~~~~~l 446 (1132)
.|+++.|+++..-||+|...|.|.||.+...+.. ....-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999999999999999999976543111 111223
Q ss_pred ecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE--ecC------CCCCeEEEEee---ccCCc---cEEE
Q 001176 447 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT--FEG------HEAPVYSVCPH---HKESI---QFIF 512 (1132)
Q Consensus 447 ~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~--~~~------h~~~v~~i~~~---~~~~~---~~l~ 512 (1132)
....++|++++.|.-| +++.|..+|.+.|.|++....++. +.. ....|+++.|. ..+|+ -+++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3446899999998666 799999999999999988887765 222 23467778775 33333 5789
Q ss_pred EEecCCeEEEEEcCC-CCceE------EecCCCCeEEEEE-EcCC---------------------CCEEEEEecCCCCC
Q 001176 513 STAIDGKIKAWLYDY-LGSRV------DYDAPGNWCTMMA-YSAD---------------------GTRLFSCGTSKEGE 563 (1132)
Q Consensus 513 s~s~dg~i~~wd~~~-~~~~~------~~~~~~~~v~~~~-~s~~---------------------~~~l~~~~~~~~~~ 563 (1132)
+|...|.+.+|.+.- ..... ....+.+.|..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 999999999997752 21111 1113444554444 3221 01444554 4
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEe-----CCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC--CCCcceEE
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFD-----TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLR 636 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~ 636 (1132)
..++++...+.+.......... ....+.+- ..+..|++-..+|.|+++.+..-+.+..+..... ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 4599999887776554442211 22334442 2456677788999999999999999888876421 12355677
Q ss_pred EcCCCCEEEEEeCCCcEEEEEc
Q 001176 637 FNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
++++|..++-.+.. .+.++.+
T Consensus 314 is~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSS-EEEEEEE
T ss_pred ECCCCCEEEEeCcc-cEEEEEE
Confidence 78888866655443 4444443
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.89 E-value=0.0018 Score=73.10 Aligned_cols=220 Identities=15% Similarity=0.206 Sum_probs=121.0
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee
Q 001176 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 916 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 916 (1132)
......+.++|+|++++++++|...|+.....+.... +.-...+|.+ .++ +|+-...+.|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 3456889999999999999999999999665554332 3345688988 555 55666688999974333333233
Q ss_pred eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEE
Q 001176 917 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV 996 (1132)
Q Consensus 917 l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~v 996 (1132)
++.. ..+..|.. |..|...+.+ .|.+||+.+++.+. ...- .+|..+.|+++|.+++...+..+.+
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~-----~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIR-----RIDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEE-----EESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceee-----EEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3322 23444433 8888777655 79999999977433 2221 2368999999999999988889998
Q ss_pred EeCCCC------------ceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcc--eecccCCCccccccc
Q 001176 997 YDSKLE------------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR--FRCRIGPSAYIPTYA 1062 (1132)
Q Consensus 997 wd~~~~------------~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~ 1062 (1132)
++.+.. ....... ....|.+.+|..| -++.| +.. .++. +..|+ .++.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~d-~fiYt-T~~-~lkY--l~~Ge~~~i~~ld--------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVED-CFIYT-TSN-HLKY--LVNGETGIIAHLD--------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S---------
T ss_pred EEecchhcccccccCchhceEEEEE---ecceeEEEEEEcC-EEEEE-cCC-eEEE--EEcCCcceEEEcC---------
Confidence 887544 2222211 1457888888766 33333 323 6665 33333 222222
Q ss_pred cCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1063 VSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1063 ~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
..+.-+.+.| ..+.+.....|+.+..+.+.-.+
T Consensus 233 -----~~~yllgy~~-~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 233 -----KPLYLLGYLP-KENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp -----S--EEEEEET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred -----CceEEEEEEc-cCCEEEEEECCCCEEEEEECHHH
Confidence 2344555666 45788888899999988886655
No 350
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.85 E-value=0.012 Score=67.91 Aligned_cols=249 Identities=13% Similarity=0.101 Sum_probs=135.8
Q ss_pred CeeEEEEccCCCeEEEEEcCCC----cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 345 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
.+..+.+||||++++++-+..| .+++.|+.+|+.+.. .+ . ...-..+.|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~--~~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------E--NPKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------E--EEESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------c--ccccceEEEeCCCCEE
Confidence 3446789999997665544444 599999999976542 11 0 1112239999999877
Q ss_pred EEEeCCC-----------eEEEEEecCCCceeeeeeeecccCC--EEEEEEecCCCcEEEEEEcC-C-CcEEEEECCCC-
Q 001176 421 GVAFSKH-----------IVHLYTYNPTGELRQHLEIDAHVGG--VNDIAFAHPNKQLCIVTCGD-D-KMIKVWDVVAG- 484 (1132)
Q Consensus 421 as~~~dg-----------~i~iwd~~~~~~~~~~~~l~~h~~~--v~~v~~s~d~~~~~l~s~~~-d-g~v~vwd~~~~- 484 (1132)
+....+. .|+.|.+.+...-. ...+...... ...+..++|++.++|.+.+. + ..+.+.|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 6654332 37777777654321 1133333332 56888999999633323322 2 35788888775
Q ss_pred ---eEEEEecCCCCCe-EEEEeeccCCccEEEEE---ecCCeEEEEEcCCCCc---eEEecCCCC--eEEEEEEcCCCCE
Q 001176 485 ---RKQYTFEGHEAPV-YSVCPHHKESIQFIFST---AIDGKIKAWLYDYLGS---RVDYDAPGN--WCTMMAYSADGTR 552 (1132)
Q Consensus 485 ---~~~~~~~~h~~~v-~~i~~~~~~~~~~l~s~---s~dg~i~~wd~~~~~~---~~~~~~~~~--~v~~~~~s~~~~~ 552 (1132)
.....+......+ ..+... ++ .+++.. ...+.|...++..... ...+..+.. .+..+. ..+++
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~--~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~ 338 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH--GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDY 338 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE--TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc--CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCE
Confidence 2233333333333 333332 22 344333 2345677777777663 224444444 344444 44556
Q ss_pred EEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEE--EE--cCCeEEEEECCCCeeE
Q 001176 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AG--DEFQIKFWDMDNMNML 620 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~ 620 (1132)
|+.... .++...|+++++..+...........+.+..+...++++.+.. .| .-+.++.||+.+++..
T Consensus 339 Lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 339 LVLSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEEEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 665443 2456789999998455555555444435666665566655443 22 4467888898887654
No 351
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.84 E-value=2.3e-05 Score=52.97 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=29.6
Q ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHHcCCC
Q 001176 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1132)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1132)
.++++.++|+|||.+.||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 352
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.84 E-value=0.0078 Score=70.40 Aligned_cols=276 Identities=10% Similarity=0.068 Sum_probs=154.7
Q ss_pred EEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeE--EEEEcCCCCeEEEEeCCCeEEEEEecC
Q 001176 359 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN--RCVWGPDGLMLGVAFSKHIVHLYTYNP 436 (1132)
Q Consensus 359 la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~v~~spdg~~las~~~dg~i~iwd~~~ 436 (1132)
+..++.++.|.-.|..+|+.+ |......... .+...+. .++.. ++..++.++.++.|.-+|.++
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~-------W~~~~~~~~~------~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T 129 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVL-------WRYDPKLPAD------RGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET 129 (488)
T ss_pred EEEeCCCCcEEEEECCCChhh-------ceeCCCCCcc------ccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC
Confidence 555677899999999999765 3221110000 0000010 01111 236777888999999999999
Q ss_pred CCceeeeeeeeccc---CCE-EEEEEecCCCcEEEEEEc---------CCCcEEEEECCCCeEEEEecCCCCC-------
Q 001176 437 TGELRQHLEIDAHV---GGV-NDIAFAHPNKQLCIVTCG---------DDKMIKVWDVVAGRKQYTFEGHEAP------- 496 (1132)
Q Consensus 437 ~~~~~~~~~l~~h~---~~v-~~v~~s~d~~~~~l~s~~---------~dg~v~vwd~~~~~~~~~~~~h~~~------- 496 (1132)
|+.+-... +..+. ..+ ....+. + . +++.++ .++.|...|..+|+.+.++......
T Consensus 130 G~~~W~~~-~~~~~~~~~~i~ssP~v~-~-~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~ 204 (488)
T cd00216 130 GKQVWKFG-NNDQVPPGYTMTGAPTIV-K-K--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTW 204 (488)
T ss_pred CCEeeeec-CCCCcCcceEecCCCEEE-C-C--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCC
Confidence 88654321 11110 001 111222 2 2 344443 4688999999999988776532110
Q ss_pred -------------eE-EEEeeccCCccEEEEEecCC------------------eEEEEEcCCCCceEEecCCCCeEE--
Q 001176 497 -------------VY-SVCPHHKESIQFIFSTAIDG------------------KIKAWLYDYLGSRVDYDAPGNWCT-- 542 (1132)
Q Consensus 497 -------------v~-~i~~~~~~~~~~l~s~s~dg------------------~i~~wd~~~~~~~~~~~~~~~~v~-- 542 (1132)
+. +.++.+ .+..++.++.++ .|.-.|..+++.+...........
T Consensus 205 ~~~~~~~~~~g~~vw~~pa~d~--~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 205 GPDRQMWGPGGGTSWASPTYDP--KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred CCCcceecCCCCCccCCeeEeC--CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc
Confidence 11 112221 235677776655 788889998888876543221110
Q ss_pred ----EEEE----cCCCC---EEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEE--------
Q 001176 543 ----MMAY----SADGT---RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-------- 603 (1132)
Q Consensus 543 ----~~~~----s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-------- 603 (1132)
...+ .-+|. .++.++ .++.++..|.++|+.+........ .++.+| ..++.+
T Consensus 283 ~~~s~p~~~~~~~~~g~~~~~V~~g~----~~G~l~ald~~tG~~~W~~~~~~~----~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 283 DGPNQPSLADIKPKDGKPVPAIVHAP----KNGFFYVLDRTTGKLISARPEVEQ----PMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccCCCCeEEeccccCCCeeEEEEEEC----CCceEEEEECCCCcEeeEeEeecc----ccccCC--ceEEEccccccccC
Confidence 0011 12333 344543 377899999999998876643211 123333 233332
Q ss_pred ----------EcCCeEEEEECCCCeeEEEEeCCCCC------CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceee
Q 001176 604 ----------GDEFQIKFWDMDNMNMLTTVDADGGL------PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 665 (1132)
Q Consensus 604 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 665 (1132)
..+|.+.-.|..+|+.+-........ .....-.....+..|++++.||.|+.+|..+|+.+.
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceee
Confidence 24678999999999988776643110 011111111246788999999999999999994433
No 353
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.83 E-value=1.4e-05 Score=62.02 Aligned_cols=52 Identities=33% Similarity=0.540 Sum_probs=42.9
Q ss_pred HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHHHHHHHHhcCCH
Q 001176 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDR 90 (1132)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~ 90 (1132)
+..++++|+.|+|+.|+..+..........-+ .+.|.|++|+|+||+..++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 57899999999999999999888554333323 49999999999999998764
No 354
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0014 Score=73.65 Aligned_cols=180 Identities=16% Similarity=0.106 Sum_probs=111.4
Q ss_pred CeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEe---CC-CcEEEEEcccceeeeeeccccCCeeEEEEcCCC
Q 001176 858 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM---ED-SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 933 (1132)
Q Consensus 858 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~---~d-g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 933 (1132)
..+.+-|.+ +.....+......+..-+|+| +++.++..+ .. ..++++|+.+++....+. ..+.-...+|+|||
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG 249 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDG 249 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCC
Confidence 345555655 555555555556677788999 666655442 22 359999999886544433 22223357899999
Q ss_pred CEEEEE-cCCCc--EEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeC--C--eEEEEeCCCCceee
Q 001176 934 NALVSS-GADAQ--LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--S--QISVYDSKLECSRS 1006 (1132)
Q Consensus 934 ~~l~s~-~~D~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d--~--~v~vwd~~~~~~~~ 1006 (1132)
+.|+-+ ..|+. |.+.|+.++... .+....+.. ..-.|+|||++++..+| | .|.+++..+.....
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~---~Lt~~~gi~------~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLP---RLTNGFGIN------TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCcce---ecccCCccc------cCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 887754 45665 555566665521 133333322 36789999999999543 3 37777776665544
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecC-Cc--EEEEeCCCcceeccc
Q 001176 1007 WSPKDALPAPISSAIYSCDGLLVYAGFCD-GA--IGVFDAETLRFRCRI 1052 (1132)
Q Consensus 1007 ~~~~~~h~~~i~~i~~s~dg~~las~~~d-g~--i~vwd~~~~~~~~~~ 1052 (1132)
+.... ..-..-.+||||++++..+.. |. |.+.|+.++.....+
T Consensus 321 iT~~~---~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 321 LTFSG---GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred eeccC---CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 43322 222277899999999877643 44 777777776643333
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.80 E-value=0.01 Score=61.12 Aligned_cols=191 Identities=10% Similarity=0.125 Sum_probs=110.3
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
...+.+++|.|+.+.|+|+....+.|...+.+ |+.+.+.. +.+ .+..-.|++.-++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 34699999999988789999999999888864 66554311 233 346778999888888887
Q ss_pred EeCCCeEEEEEecCCCc-e--ee--eeeee---cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC---CeEEEE--
Q 001176 423 AFSKHIVHLYTYNPTGE-L--RQ--HLEID---AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQYT-- 489 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~-~--~~--~~~l~---~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~---~~~~~~-- 489 (1132)
.-.++.+.++++..... + .. ...+. .+...+-.++|++.++. |+.+-......++.+.. ...+..
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeecc
Confidence 76789999999854321 1 11 11111 24557899999999884 44455555556665543 221111
Q ss_pred e------cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CeEEEEEEcCCCCEEE
Q 001176 490 F------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLF 554 (1132)
Q Consensus 490 ~------~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~ 554 (1132)
. ......+.+++++|.. +++++....+..|..+| ..++.+..+.... ...-.++|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t-~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRT-GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTT-TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCCC-CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1 1234567889998864 47888888889999998 4444444333332 2577899999997776
Q ss_pred EE
Q 001176 555 SC 556 (1132)
Q Consensus 555 ~~ 556 (1132)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 65
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.76 E-value=0.0036 Score=70.73 Aligned_cols=224 Identities=10% Similarity=0.063 Sum_probs=119.2
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
........+.++|+|+.++++ .||.-.|+..... +. ...+.-...+|.+.++ +|+-...++|.|+.--
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYKNF 97 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEETT
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEEcC
Confidence 344567899999999999994 6788888883332 11 1123456788988654 6777768899997422
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 562 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1132)
+.+....++- ...+..|.. |.+|...+. +.|.+||+.+.+.+..+... .|..+.|+++|++++..+
T Consensus 98 ~~~~~k~i~~-~~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----- 163 (443)
T PF04053_consen 98 KNEVVKSIKL-PFSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----- 163 (443)
T ss_dssp EE-TT------SS-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE------
T ss_pred ccccceEEcC-CcccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe-----
Confidence 3222223321 123444432 355555544 48999999998888877754 489999999999999886
Q ss_pred CCeEEEEeCCCC-----------ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001176 563 ESHLVEWNESEG-----------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 631 (1132)
Q Consensus 563 ~~~i~~wd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1132)
+..+++++.... .....+... ...|.+.+|..+ .++-.... .++.+--.....+..+. .+
T Consensus 164 ~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d--~fiYtT~~-~lkYl~~Ge~~~i~~ld-----~~ 234 (443)
T PF04053_consen 164 KDSIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVED--CFIYTTSN-HLKYLVNGETGIIAHLD-----KP 234 (443)
T ss_dssp S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEEEETTEEEEEEE-S-----S-
T ss_pred CCeEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEcC--EEEEEcCC-eEEEEEcCCcceEEEcC-----Cc
Confidence 334777765433 012222211 226888888865 44444444 77663222222333332 25
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 632 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+.-+...++.+.++....|+.+..+.+...
T Consensus 235 ~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 235 LYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp -EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred eEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 677778887788999999999998877644
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.74 E-value=0.0056 Score=63.03 Aligned_cols=202 Identities=13% Similarity=0.121 Sum_probs=112.7
Q ss_pred CCCeeEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEEeeCC-CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce-
Q 001176 837 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE- 912 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~- 912 (1132)
...+..++|.|+.+.|++.. .+.|.-++. +|+.++.+.-. .+..-.|++.. ++.++++--.++.+.++++....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----T
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecccc
Confidence 44699999999877555554 578888887 47887776543 35678899987 77777766668999999984321
Q ss_pred -----eeeee-----ccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCC---cccccceeeeCCCCCCCCCCCceeEEE
Q 001176 913 -----VKTKL-----KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQF 979 (1132)
Q Consensus 913 -----~~~~l-----~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~ 979 (1132)
....+ ..++..+-.|+|.|.++.|+.+-...-..+|.+.. .....................+..+++
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 11111 13556689999999988888777776677777754 111111111111101111245788999
Q ss_pred CCCCcEEEE-E-eCCeEEEEeCCCCceeecCCCCCC------CCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001176 980 HNDQTHLLV-V-HESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVF 1041 (1132)
Q Consensus 980 s~dg~~l~~-~-~d~~v~vwd~~~~~~~~~~~~~~h------~~~i~~i~~s~dg~~las~~~dg~i~vw 1041 (1132)
+|....|.+ + .+..+..+|.+++....+....+. -..--.|+|.++|++ +..++-+..++|
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L-YIvsEpNlfy~f 247 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL-YIVSEPNLFYRF 247 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E-EEEETTTEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE-EEEcCCceEEEe
Confidence 998666555 5 456788888877765544332211 235678999999964 455677766655
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.73 E-value=0.016 Score=65.73 Aligned_cols=198 Identities=12% Similarity=0.094 Sum_probs=108.1
Q ss_pred EEEeeCCCEEEEeeCC------------eEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc
Q 001176 843 IALSKNDSYVMSASGG------------KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 910 (1132)
Q Consensus 843 ~~~s~dg~~la~~sdg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 910 (1132)
++.+|.|..+|...|. .|+||+.. |+++..+.-..+.|.++.|+. +. .|++...||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence 4555666666655433 59999975 566666544448999999987 54 555677999999999863
Q ss_pred ce------eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCC---CCCCcee-EEEC
Q 001176 911 DE------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS---PLVGETK-VQFH 980 (1132)
Q Consensus 911 ~~------~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~-~~~s 980 (1132)
.. .+....-....+....+...|-.+.+ .++.+.+-+--.... .........+... ....... ..++
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccc-hhhccccCCCcccccccccccccceEee
Confidence 22 11111112223333344445533333 344443332211110 0001111111000 0001111 2345
Q ss_pred CCCcEEEE-EeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccC
Q 001176 981 NDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1053 (1132)
Q Consensus 981 ~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~ 1053 (1132)
.+....+. ..++.+.+.+. ..+. .. ..+++..|++||+|++||.-..+|.+.|.+.+-.+.+..+.
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~~---i~----~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFKQ---ID----SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred cCcceEEEEecCCEEEEEEcccccc---cc----CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 55544444 45566664443 2111 11 14689999999999999999999999999887776666655
No 359
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.0019 Score=72.63 Aligned_cols=196 Identities=11% Similarity=0.093 Sum_probs=114.5
Q ss_pred cceEEeec-CCCCeeEEEEccCCCeEEEEEcCC---CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeE
Q 001176 334 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNV---GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 409 (1132)
Q Consensus 334 ~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 409 (1132)
+...+.+. ....+..-+|+|+++.+....-.. ..+.++++.+++..... .-.+.-.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--------------------~~~g~~~ 241 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--------------------NFNGNNG 241 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--------------------ccCCccC
Confidence 44555555 567888899999999755543222 35999999988754321 1233344
Q ss_pred EEEEcCCCCeEEEE-eCCCe--EEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc--EEEEECCCC
Q 001176 410 RCVWGPDGLMLGVA-FSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--IKVWDVVAG 484 (1132)
Q Consensus 410 ~v~~spdg~~las~-~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~--v~vwd~~~~ 484 (1132)
.-+|||||++||.+ ..||. |.+.|+.++...+ +..-.+.-+.-.|+|||+. ++++.+..|. |.+.|++.+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence 57899999988766 44665 5666776655222 3333333347789999996 3444555554 555565554
Q ss_pred eEEEEecCCCCCeEEEEeeccCCccEEEEEec-CCe--EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 485 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 485 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
.. ..+....+.-..-.|+| ||.+++..+. +|. |.+.|+.++.. ..............+.++|+.++..+.
T Consensus 317 ~~-~riT~~~~~~~~p~~Sp--dG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 317 QV-TRLTFSGGGNSNPVWSP--DGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ce-eEeeccCCCCcCccCCC--CCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 43 33322222222444555 5567766664 344 56666655554 222223333445677888888876653
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.68 E-value=0.18 Score=59.23 Aligned_cols=196 Identities=13% Similarity=0.047 Sum_probs=114.8
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeeccc--CCE-------EEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV--GGV-------NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~--~~v-------~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~ 487 (1132)
+..|.+++.++.|.-.|..+|+.+-... ..... ..+ ..+++. +. .++.++.|+.|.-.|..+|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~-~~~~~~~~~~~~~~~~~rg~av~--~~--~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYD-PKLPDDVIPVMCCDVVNRGVALY--DG--KVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEec-CCCCcccccccccccccccceEE--CC--EEEEEcCCCEEEEEECCCCCEE
Confidence 4466666677888888888887654321 11100 010 112222 23 4667888999999999999998
Q ss_pred EEecC--CCC--CeEEEEeeccCCccEEEEEe------cCCeEEEEEcCCCCceEEecCCCC------------------
Q 001176 488 YTFEG--HEA--PVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPGN------------------ 539 (1132)
Q Consensus 488 ~~~~~--h~~--~v~~i~~~~~~~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~~------------------ 539 (1132)
..... +.. .+.+--.. . + ..++.+. .+|.|.-+|.++++.+..+..-..
T Consensus 144 W~~~~~~~~~~~~~tssP~v-~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~ 220 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLV-V-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGA 220 (527)
T ss_pred eecccccccccccccCCcEE-E-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccccc
Confidence 76542 111 11111000 1 2 3445443 268899999988877664332110
Q ss_pred -------------eE-EEEEEcCCCCEEEEEecC--------CCCC----CeEEEEeCCCCceeeeeccccCC-------
Q 001176 540 -------------WC-TMMAYSADGTRLFSCGTS--------KEGE----SHLVEWNESEGAIKRTYSGFRKR------- 586 (1132)
Q Consensus 540 -------------~v-~~~~~s~~~~~l~~~~~~--------~~~~----~~i~~wd~~~~~~~~~~~~~~~~------- 586 (1132)
.+ ..+++.+...+++.+..+ +.++ ..|.-.|+++|+....++.....
T Consensus 221 ~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~ 300 (527)
T TIGR03075 221 KTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGV 300 (527)
T ss_pred CCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCC
Confidence 11 134666666666665521 1122 26888999999998887653220
Q ss_pred -ceEEEEEeCCCC---EEEEEEcCCeEEEEECCCCeeE
Q 001176 587 -SLGVVQFDTTRN---RFLAAGDEFQIKFWDMDNMNML 620 (1132)
Q Consensus 587 -~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~ 620 (1132)
...-+.+..+|+ .++.+..+|.+++.|..+|+.+
T Consensus 301 ~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 301 NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 111133334665 6677889999999999999886
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.11 Score=58.60 Aligned_cols=270 Identities=13% Similarity=0.133 Sum_probs=170.1
Q ss_pred CCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeE
Q 001176 330 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 409 (1132)
Q Consensus 330 d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 409 (1132)
+..+......+.-......+.+.|+|..+.++-.....+..-+......... ...-...-.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~ 77 (381)
T COG3391 17 NTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPA 77 (381)
T ss_pred eecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCcccc
Confidence 3344444555554447788889999865555543333444444331111000 000113455
Q ss_pred EEEEcCCCCeEEE-EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc-CCCcEEEEECCCCeEE
Q 001176 410 RCVWGPDGLMLGV-AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 410 ~v~~spdg~~las-~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~dg~v~vwd~~~~~~~ 487 (1132)
.+++++++..+.. ...+..|.+.|..+........ .+. .-..++++|+++.++++-.. .++++.+.|..+++.+
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~--vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP--VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee--ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 7889998885544 4456889999977766554321 122 56789999999863333333 3789999999999988
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE-E---ecCCCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-D---YDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
.+...-..+ ..+++.|.+. ..+++-..++.|.+.|........ . ..........+.++++|+++...... +.+
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~-~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~ 230 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGN-KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGS 230 (381)
T ss_pred EEEecCCCc-ceEEECCCCC-eEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CCC
Confidence 876544445 7788877552 244555689999999966544332 0 11122344678899999977766531 124
Q ss_pred CeEEEEeCCCCceeee-eccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCC
Q 001176 564 SHLVEWNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDAD 626 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 626 (1132)
+.+...|..++..... ...... ....+.++|+|..+++.. ..+.+.+.|..+..........
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred ceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 6899999988877665 332222 345588999999988874 4588999999888877766543
No 362
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.54 E-value=3.2e-05 Score=85.03 Aligned_cols=205 Identities=15% Similarity=0.206 Sum_probs=132.2
Q ss_pred CCCCeeEEEEccCCC-eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCe
Q 001176 342 QGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLM 419 (1132)
Q Consensus 342 h~~~V~~~~~spdg~-~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 419 (1132)
....+.|++++-+.+ .++++|..+|.|-+-.+....-- ......+|....++++|++ |...
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 345677887776544 58999999999999887654321 0112557888999999999 7778
Q ss_pred EEEEe----CCCeEEEEEecCCCc-eeeeeeeec-ccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE-EEEecC
Q 001176 420 LGVAF----SKHIVHLYTYNPTGE-LRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEG 492 (1132)
Q Consensus 420 las~~----~dg~i~iwd~~~~~~-~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~ 492 (1132)
||+|- .|..+.|||+.++-. .+....+.+ -.....+++|..+.+ ++.+|...+.+.++|++.... ...+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--
Confidence 88873 356799999988611 111111222 334566899998877 889999999999999873321 1111
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEE-cCCCCceEEecCC-----CCeEEEEEEcCCCCE-EEEEecCCCCCCe
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL-YDYLGSRVDYDAP-----GNWCTMMAYSADGTR-LFSCGTSKEGESH 565 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd-~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~-l~~~~~~~~~~~~ 565 (1132)
....+..+.+.|-. ++++++-. ||.|-+|| ...-+.......+ ...+..++|.|...- ++++.. ..++
T Consensus 194 nTk~vqG~tVdp~~-~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~t 268 (783)
T KOG1008|consen 194 NTKYVQGITVDPFS-PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSIT 268 (783)
T ss_pred hhhhcccceecCCC-CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---Ccce
Confidence 23345556665532 25666555 99999999 4433332221111 225889999996543 444443 3678
Q ss_pred EEEEeCC
Q 001176 566 LVEWNES 572 (1132)
Q Consensus 566 i~~wd~~ 572 (1132)
|+++|+.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 9999875
No 363
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.031 Score=62.99 Aligned_cols=205 Identities=15% Similarity=0.167 Sum_probs=139.6
Q ss_pred eeEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeC---CCcEEEEEcccceee
Q 001176 840 AACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME---DSSVQIYNVRVDEVK 914 (1132)
Q Consensus 840 v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~---dg~v~iwd~~~~~~~ 914 (1132)
-..+++++++..+.+.. ++.|.+.|..+.+......--. ....++++| ++..+.++.. ++.+.+.|..+++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45688889998666655 6899999988777766654222 667899999 5555444443 689999999988888
Q ss_pred eeeccccCCeeEEEEcCCCCEEEEE-cCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeC--
Q 001176 915 TKLKGHQNRITGLAFSPTLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE-- 991 (1132)
Q Consensus 915 ~~l~~h~~~V~~l~~spdg~~l~s~-~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d-- 991 (1132)
.....-..+ ..++++|+|..+..+ ..++.|.+.|..+..... .. .............++++|+|.++.+..+
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---VGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---cccccccCCCCceEEECCCCCEEEEEeccC
Confidence 775433344 889999999955544 578999999977654321 00 0000111134578999999998887432
Q ss_pred --CeEEEEeCCCCceeec-CCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEeCCCcceecccC
Q 001176 992 --SQISVYDSKLECSRSW-SPKDALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLRFRCRIG 1053 (1132)
Q Consensus 992 --~~v~vwd~~~~~~~~~-~~~~~h~~~i~~i~~s~dg~~las~~~-dg~i~vwd~~~~~~~~~~~ 1053 (1132)
+.+...|......... .... -. .-..+.++|+|+.+.+... .+.+.+-|..+......+.
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~-~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVG-SG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCceEEEEeCCCceEEEeccccc-cC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 4788888844443333 2211 02 4556889999999888744 4889999999887776554
No 364
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.46 E-value=0.03 Score=56.28 Aligned_cols=235 Identities=15% Similarity=0.093 Sum_probs=137.5
Q ss_pred eEEEEeeCCC-EEEEee-CCe-EEEEECCCCeEEEEeeCCCCC--eEEEEEeCCCCCeEEEEeCC-----CcEEEEEccc
Q 001176 841 ACIALSKNDS-YVMSAS-GGK-VSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIAIGMED-----SSVQIYNVRV 910 (1132)
Q Consensus 841 ~~~~~s~dg~-~la~~s-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~ 910 (1132)
..++++|.-. -++.+- -|+ ..++|..+.+...++...++. --.=.||| +|.+|...-.| |.|-|||...
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence 3577777544 444444 455 778999888776666543332 12347999 88888765433 6899999875
Q ss_pred c-eeeeeeccccCCeeEEEEcCCCCEEEEEcC------C------------CcEEEEECCCcccccceeeeCCCCCCCCC
Q 001176 911 D-EVKTKLKGHQNRITGLAFSPTLNALVSSGA------D------------AQLCMWSIDKWEKLKSRFIQAPAGRQSPL 971 (1132)
Q Consensus 911 ~-~~~~~l~~h~~~V~~l~~spdg~~l~s~~~------D------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 971 (1132)
+ +.+..+..|.-.--.+.|.+||++++.+.. | -.+.+.|..+++.+.+..+.....+
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~---- 225 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ---- 225 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----
Confidence 4 566778888888888999999999987653 1 1344555455554443333211111
Q ss_pred CCceeEEECCCCcEEEEEe-CC-----eEEEEeC-CCCceeecCCCC----CCCCCeEEEEEccCCCEEEEEe-cCCcEE
Q 001176 972 VGETKVQFHNDQTHLLVVH-ES-----QISVYDS-KLECSRSWSPKD----ALPAPISSAIYSCDGLLVYAGF-CDGAIG 1039 (1132)
Q Consensus 972 ~~v~~~~~s~dg~~l~~~~-d~-----~v~vwd~-~~~~~~~~~~~~----~h~~~i~~i~~s~dg~~las~~-~dg~i~ 1039 (1132)
..+..++..+||+.++.+. .| --.|=-. .++.+..+.... .....|-+++..-+..+++..+ ..+...
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 4577888888888776641 11 0111111 222222221110 0134577888876655555444 455678
Q ss_pred EEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 001176 1040 VFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1096 (1132)
Q Consensus 1040 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~ 1096 (1132)
+||..+|..+..-.... ...++ + ...=++..+.+|.+.++.
T Consensus 306 i~da~tG~vv~~a~l~d-------------aaGva--~-~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 306 IWDAATGAVVSEAALPD-------------AAGVA--A-AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEcCCCcEEecccccc-------------cccce--e-ccCceEEecCCceEEecc
Confidence 89999999875543211 11111 1 223355566788888773
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.46 E-value=0.13 Score=58.47 Aligned_cols=232 Identities=14% Similarity=0.115 Sum_probs=113.4
Q ss_pred cCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCcee---eeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR---QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~---~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
+.|.++.|+.+.+++ +-..||.+++||+.+..... ......-....+.+..+..+|- .+.+ .++.+.+-+-.
T Consensus 81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt--~~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLT--GNNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEEC--CCCeEEEEeCc
Confidence 789999999865555 55699999999987433000 0000011112233333433442 3333 34444443322
Q ss_pred CCe-EEEEe---cC-----CCC-CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001176 483 AGR-KQYTF---EG-----HEA-PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 552 (1132)
Q Consensus 483 ~~~-~~~~~---~~-----h~~-~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 552 (1132)
... ..+.+ .+ +.. ....+ .....+....+....++.+.+-+-..... ....+++..++.||+|++
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~ 230 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKF 230 (410)
T ss_pred cccchhhccccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCE
Confidence 211 11111 11 000 01111 11122334455555556666443322111 112468999999999999
Q ss_pred EEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001176 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
++.-.. ++.+.+.+..-.+....+..........+.|..+ |..+..|. ..+..+...+
T Consensus 231 iAl~t~----~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~---------dav~l~~~----~~l~lvg~~~----- 288 (410)
T PF04841_consen 231 IALFTD----SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN---------DAVVLSWE----DELLLVGPDG----- 288 (410)
T ss_pred EEEEEC----CCCEEEEECcccceeEEeecCcCCCCcEEEEECC---------CcEEEEeC----CEEEEECCCC-----
Confidence 988764 6778888876666666665543334555666544 33333341 1122221111
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecccc
Q 001176 633 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 671 (1132)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 671 (1132)
..+.|.-++..++..-.|| +||+.-... +.++.+...
T Consensus 289 ~~~~~~~~~~~~l~~E~DG-~riit~~~~-~~l~~Vp~~ 325 (410)
T PF04841_consen 289 DSISFWYDGPVILVSEIDG-VRIITSTSH-EFLQRVPDS 325 (410)
T ss_pred CceEEeccCceEEeccCCc-eEEEeCCce-EEEEECCHH
Confidence 2245545555555555564 788765444 444444433
No 366
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.43 E-value=0.13 Score=55.49 Aligned_cols=230 Identities=12% Similarity=0.099 Sum_probs=132.2
Q ss_pred CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe-----
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF----- 490 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~----- 490 (1132)
.++.|+.|+.+| +.+++.......... .+...|..+...++-+ .++.-+ |+.++++++..-.....-
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i----~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI----LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeE----eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhccccccccccc
Confidence 678899999999 999999333322211 1233499999999887 444443 599999998764433311
Q ss_pred ---------cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC-----CceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 491 ---------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----GSRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 491 ---------~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
......+...+......+...+.....+.|.+|.+... .....+.. ...+..++|. ++.++.+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEE
Confidence 11223344444112223345555666669998887663 22233333 3567888888 5566666
Q ss_pred ecCCCCCCeEEEEeCCCCceeeeecccc-----------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEE--EE
Q 001176 557 GTSKEGESHLVEWNESEGAIKRTYSGFR-----------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--TV 623 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~ 623 (1132)
. .....+.|+.++.....+.... ..++..+.. +++.+|++- +..-.+.|.. |+... .+
T Consensus 155 ~-----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i 225 (275)
T PF00780_consen 155 T-----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKN-GEPSRKSTI 225 (275)
T ss_pred e-----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCC-CCcCcccEE
Confidence 5 3348889998776544432111 112333333 334555543 3333444443 33332 33
Q ss_pred eCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccc
Q 001176 624 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 672 (1132)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 672 (1132)
.... ...++++. ..+|+..+. +.|.+|++.++ ++.+.+....
T Consensus 226 ~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~~~ 267 (275)
T PF00780_consen 226 QWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETG-ELVQTIPLPN 267 (275)
T ss_pred EcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCC-cEEEEEECCC
Confidence 3322 34556663 457776655 56999999999 7777776543
No 367
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.43 E-value=0.0066 Score=71.47 Aligned_cols=189 Identities=11% Similarity=0.065 Sum_probs=109.0
Q ss_pred CCeeEEEEeeCCCEEEEee-------CC--eEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCC--------
Q 001176 838 ESAACIALSKNDSYVMSAS-------GG--KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED-------- 900 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d-------- 900 (1132)
..+.+.++||||+.+|... |+ .|.+++.. +.. ..+.. ....+.-.|+| +|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3578899999999887664 32 46666653 222 33321 23478899999 77766665422
Q ss_pred ----CcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEE---EECCCcccccceeeeCCCCCCCCCCC
Q 001176 901 ----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM---WSIDKWEKLKSRFIQAPAGRQSPLVG 973 (1132)
Q Consensus 901 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1132)
+.+.+.++..++... ...+.|..+.|||||..++... ++.|++ -....++...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444443322 2356799999999999888766 467776 444444311111111111111 23
Q ss_pred ceeEEECCCCcEEEEEeCCeEEEEeC--CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001176 974 ETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1040 (1132)
Q Consensus 974 v~~~~~s~dg~~l~~~~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~v 1040 (1132)
+..+.|..++.+++...++...+|.+ .+.....+ .......++.+++-+++ -++....+|.+.+
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 57889999999765544444445554 55443332 22233667888887763 3555566664443
No 368
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=97.42 E-value=0.00028 Score=65.28 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=69.8
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chhH
Q 001176 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1132)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1132)
++.. ++|+++.+.||||+.+|..++|..|+++.-..+...+.+++++|+.+..+.++.+++....++. ++.+
T Consensus 25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s 103 (133)
T cd08044 25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDA 103 (133)
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHH
Confidence 5555 9999999999999999999999999998877776678899999999999999998887776655 4566
Q ss_pred HHHHHHHHHh
Q 001176 140 RNIMLVELKK 149 (1132)
Q Consensus 140 r~~l~~~l~~ 149 (1132)
-..|+..|++
T Consensus 104 ~~lL~~~L~~ 113 (133)
T cd08044 104 YSLLLRFLES 113 (133)
T ss_pred HHHHHHHHHH
Confidence 6777777776
No 369
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.40 E-value=0.00021 Score=78.78 Aligned_cols=248 Identities=14% Similarity=0.145 Sum_probs=148.8
Q ss_pred CCCeeEEEEeeCCC--EEEEee-CCeEEEEECCCCeE--EEEeeCCCCCeEEEEEeCCCCCeEEEEe----CCCcEEEEE
Q 001176 837 EESAACIALSKNDS--YVMSAS-GGKVSLFNMMTFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGM----EDSSVQIYN 907 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~--~la~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~~~~~lasg~----~dg~v~iwd 907 (1132)
...+.|++...+.. .+++|. +|.|.+-......- .....++....++++|.+-|..+||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 33456666555443 566776 89888877654322 2344567778999999997778888773 456799999
Q ss_pred cccc--eee--eeecc-ccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECC-
Q 001176 908 VRVD--EVK--TKLKG-HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN- 981 (1132)
Q Consensus 908 ~~~~--~~~--~~l~~-h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 981 (1132)
+.++ .+. ..+.+ ......+++|-.+.+++.+|.....+.++|+......... ... ..+..+..+|
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s----vnT-----k~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS----VNT-----KYVQGITVDPF 206 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh----hhh-----hhcccceecCC
Confidence 9876 111 12222 3345668899888899999999999999999743221111 111 1345677888
Q ss_pred CCcEEEEEeCCeEEEEeC--CCCc-eeecCCC-CCCCCCeEEEEEccCC-CEEEEEe-cCCcEEEEeCCCccee------
Q 001176 982 DQTHLLVVHESQISVYDS--KLEC-SRSWSPK-DALPAPISSAIYSCDG-LLVYAGF-CDGAIGVFDAETLRFR------ 1049 (1132)
Q Consensus 982 dg~~l~~~~d~~v~vwd~--~~~~-~~~~~~~-~~h~~~i~~i~~s~dg-~~las~~-~dg~i~vwd~~~~~~~------ 1049 (1132)
.+.+++...|+.|.+||. +.+. +...... ..-...+..++|+|-. .+|++.. ..++|+.+|+..-..-
T Consensus 207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~ 286 (783)
T KOG1008|consen 207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNS 286 (783)
T ss_pred CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccccc
Confidence 788888888999999995 2222 2221111 1112358999999852 2444444 4578999987531110
Q ss_pred c-ccCCCccccccccCCCC--CCcEEEEeCCCC-CCeEEEEeCCCcEEEEec
Q 001176 1050 C-RIGPSAYIPTYAVSSNT--AHPLVIAPHPSE-PNQIALGMSDGAVHVVEP 1097 (1132)
Q Consensus 1050 ~-~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~-~~~l~s~~~Dg~i~vW~~ 1097 (1132)
. ......| | ++..+ ..+-+..|++.+ -+..+.+-..-.+..+++
T Consensus 287 ~~~~~~s~~-~---~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 287 VFVNYESKY-P---VQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV 334 (783)
T ss_pred ceeeecccc-c---ccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence 0 1111111 1 11222 566778888755 234444544555554444
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.39 E-value=0.18 Score=58.04 Aligned_cols=245 Identities=10% Similarity=0.089 Sum_probs=127.8
Q ss_pred CeEEEEEcCCCCeEEEE-eCC----CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC---------
Q 001176 407 SVNRCVWGPDGLMLGVA-FSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--------- 472 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~-~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~--------- 472 (1132)
.+..+++||||+++|.+ +.. ..++++|+++++.+... +..- ....+.|.+|++. ++++...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--cccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44468899999999876 333 35999999998655421 2211 1223999999985 3444422
Q ss_pred -CCcEEEEECCCCeEE--EEecCCCCC--eEEEEeeccCCccEEEEEecC----CeEEEEEcCCC----CceEEecCC-C
Q 001176 473 -DKMIKVWDVVAGRKQ--YTFEGHEAP--VYSVCPHHKESIQFIFSTAID----GKIKAWLYDYL----GSRVDYDAP-G 538 (1132)
Q Consensus 473 -dg~v~vwd~~~~~~~--~~~~~h~~~--v~~i~~~~~~~~~~l~s~s~d----g~i~~wd~~~~----~~~~~~~~~-~ 538 (1132)
...|+.|.+.++... ..+...... ...+..+. ++.+++..+.. ..+.+.|+... .....+... .
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~--d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK--DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T--TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC--cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 234788888776432 444444433 34555544 55666544332 34666777664 223333333 3
Q ss_pred CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce---eeeeccccCCceEEEEEeCCCCEEEEEE-cC--CeEEEE
Q 001176 539 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DE--FQIKFW 612 (1132)
Q Consensus 539 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d--g~i~iw 612 (1132)
+....+... .+.+++. +..+-..+.|...++..... ...+..+.. .+.-..+...+++|+... .+ ..|+++
T Consensus 278 ~~~~~v~~~-~~~~yi~-Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH-GDRLYIL-TNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE-TTEEEEE-E-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc-CCEEEEe-eCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEEE
Confidence 333333333 3333333 32333467788888876652 223333333 222233334455565543 44 358899
Q ss_pred ECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC----CCcEEEEEcCCcc
Q 001176 613 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDGV 662 (1132)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 662 (1132)
++..+.....+..... +.|..+...++++.+..... -+++..||+.+++
T Consensus 355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 9984555555554432 24555555565554433322 3578888888873
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.34 E-value=0.036 Score=65.39 Aligned_cols=202 Identities=12% Similarity=0.051 Sum_probs=110.3
Q ss_pred CCCCeEEEEEeCCCCCeEEEEe------CCC--cEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCC-CcEEE
Q 001176 877 PPPAATFLAFHPQDNNIIAIGM------EDS--SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD-AQLCM 947 (1132)
Q Consensus 877 ~~~~i~~l~~sp~~~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D-~~i~i 947 (1132)
....+...+++| +|+.+|... .|+ .|.+++. .+.......+ ...+.-.|+|||+.|++.... ..+++
T Consensus 348 ~~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 348 QMGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEE
Confidence 334678999999 777776654 244 4555554 2333222333 247889999999988877533 22222
Q ss_pred E-----------ECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC---CCCceee--cC-CC
Q 001176 948 W-----------SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS---KLECSRS--WS-PK 1010 (1132)
Q Consensus 948 w-----------d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~---~~~~~~~--~~-~~ 1010 (1132)
. +++.++... . ....|..+.|||||++++...++.|.+--+ ....... .. ..
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~-----~------~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~ 492 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS-----R------VPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVG 492 (591)
T ss_pred eccCCCceEEEEeccCchhhh-----c------cCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEee
Confidence 2 333322100 0 114689999999999999966788877433 2222111 00 11
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC-cceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCC
Q 001176 1011 DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET-LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD 1089 (1132)
Q Consensus 1011 ~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~D 1089 (1132)
.+....+.++.|..++.++ ++..++...+|.+.- |.....+. . ......+.+++-++ ..|+.+..+
T Consensus 493 ~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~------~---~n~~~~v~~vaa~~---~~iyv~~~~ 559 (591)
T PRK13616 493 PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALP------S---RNLSAPVVAVAASP---STVYVTDAR 559 (591)
T ss_pred cccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccC------C---CCccCceEEEecCC---ceEEEEcCC
Confidence 1223456889999999855 555555555555432 22211111 0 11235566777665 346666667
Q ss_pred CcEEEEecCCCcccccC
Q 001176 1090 GAVHVVEPSDAELKWGG 1106 (1132)
Q Consensus 1090 g~i~vW~~~~~~~~~~~ 1106 (1132)
+.+.+=.-.+++..|..
T Consensus 560 g~~~l~~~~~~~~~W~e 576 (591)
T PRK13616 560 AVLQLPNSDSGDQYWRE 576 (591)
T ss_pred ceEEecCCCCCCCCceE
Confidence 74443322333456654
No 372
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0018 Score=68.28 Aligned_cols=115 Identities=10% Similarity=0.140 Sum_probs=94.7
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHcCCCcc----------HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHH
Q 001176 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFF 74 (1132)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~ 74 (1132)
.+.|..+|..++...|+.+.+..|-+|+|...+ +.++-+++..|+-.-|++.+..-...-... ...+.|
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~LE~ 194 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-cccHHH
Confidence 344689999999999999999999999998753 678888999999999988887754332222 334889
Q ss_pred HHHHHHHHHHHhcCCHH--HHHHHHHhhcccccccCHHHHHHHHHhhc
Q 001176 75 EIRKQKYLEALDRQDRA--KAVEILVKDLKVFSSFNEELFKEITQLLT 120 (1132)
Q Consensus 75 ~i~~~~~lEll~~~~~~--~A~~~l~~~~~~~~~~~~~~~~~l~~l~~ 120 (1132)
.+..+.|++++..|... +|+...|+.++|+...+..+.+.+-.++.
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl~ 242 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSLL 242 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence 99999999999999988 99999999999997777777777666554
No 373
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.23 E-value=0.18 Score=54.38 Aligned_cols=229 Identities=14% Similarity=0.083 Sum_probs=128.0
Q ss_pred CCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEE
Q 001176 354 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 433 (1132)
Q Consensus 354 dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd 433 (1132)
.++ .|+.|+.+| +.+++......... ..+...|..+...|+-+.|++-+ |+.+.+++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~--------------------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTR--------------------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYD 62 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCcccee--------------------EeecceEEEEEEecccCEEEEEc-CCccEEEE
Confidence 344 578888888 89999832221110 01333499999999877776664 59999999
Q ss_pred ecCCCceeeee-----------eeecccCCEEEEE--EecCCCcEEEEEEcCCCcEEEEECCCC-----eEEEEecCCCC
Q 001176 434 YNPTGELRQHL-----------EIDAHVGGVNDIA--FAHPNKQLCIVTCGDDKMIKVWDVVAG-----RKQYTFEGHEA 495 (1132)
Q Consensus 434 ~~~~~~~~~~~-----------~l~~h~~~v~~v~--~s~d~~~~~l~s~~~dg~v~vwd~~~~-----~~~~~~~~h~~ 495 (1132)
+..-....... ........+...+ -...+.. .++.+- .+.|.+|.+... +..+.+. -..
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~ 139 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPD 139 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEEE-CCEEEEEEEECCcccccceeEEEE-cCC
Confidence 87643322100 0011223344444 1123332 444443 558888877653 3445554 457
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC------------CeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG------------NWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
.+.+++|.. +.++.|..+ ...+.|+.++.......... .++..+.. +++.+|++. +
T Consensus 140 ~~~~i~~~~----~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~------~ 207 (275)
T PF00780_consen 140 PPSSIAFLG----NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY------D 207 (275)
T ss_pred CcEEEEEeC----CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe------c
Confidence 788898873 466666644 47778888655544332111 12333333 445566543 2
Q ss_pred CeEEEEeCCCCceee--eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC
Q 001176 564 SHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 626 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1132)
..-.+.|. .|+..+ .+.-.. .+..+++. ..++++.+. +.|.||++.+++.++.+...
T Consensus 208 ~~g~fv~~-~G~~~r~~~i~W~~--~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 NIGVFVNK-NGEPSRKSTIQWSS--APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEcC-CCCcCcccEEEcCC--chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 22233333 454433 222111 34455554 457777665 55999999999999998754
No 374
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.23 E-value=0.099 Score=52.76 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=67.4
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCC-ceEEEEEeCCCCEEEEEE-----cCCeEEEEECC
Q 001176 542 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAG-----DEFQIKFWDMD 615 (1132)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~~ 615 (1132)
..++++|....-+.-.. .......++|....+...++....+. -.-.-.|+|||.+|++.- .-|.|-|||.+
T Consensus 71 Hgi~~~p~~~ravafAR--rPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 71 HGIAFHPALPRAVAFAR--RPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred CCeecCCCCcceEEEEe--cCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 35677776554333221 12334778898887766655433321 233356999999998864 33789999987
Q ss_pred CC-eeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 001176 616 NM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 655 (1132)
Q Consensus 616 ~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 655 (1132)
.+ +.+..+..++- .-..+.+.+||+.++.+. |-|..
T Consensus 149 ~~fqrvgE~~t~Gi--GpHev~lm~DGrtlvvan--GGIet 185 (366)
T COG3490 149 EGFQRVGEFSTHGI--GPHEVTLMADGRTLVVAN--GGIET 185 (366)
T ss_pred cccceecccccCCc--CcceeEEecCCcEEEEeC--Cceec
Confidence 43 34455555432 346789999999988764 34443
No 375
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.22 E-value=0.019 Score=68.53 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=101.4
Q ss_pred CCCeEEEE-eCCCcEEEEEcccceeeeeeccccCC-eeEEEEcCCC-------CEEEEEcCCCcEEEEECCCccccccee
Q 001176 890 DNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTL-------NALVSSGADAQLCMWSIDKWEKLKSRF 960 (1132)
Q Consensus 890 ~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg-------~~l~s~~~D~~i~iwd~~~~~~~~~~~ 960 (1132)
+.++|+.- .....|+-.|+..|+.+..+..|... |..++ |+. ...+.|-.+..+..||..-.. ..+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence 45555543 34578999999999999999888764 55544 432 234556678889999997532 111
Q ss_pred eeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001176 961 IQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1040 (1132)
Q Consensus 961 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~v 1040 (1132)
+.............++++-+.+|..++.+.+|.|++||-.+...++..+ +...+|..|..+.||++|++.+ +..+.+
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp--~lG~pI~~iDvt~DGkwilaTc-~tyLlL 643 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALP--GLGDPIIGIDVTADGKWILATC-KTYLLL 643 (794)
T ss_pred eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCC--CCCCCeeEEEecCCCcEEEEee-cceEEE
Confidence 1111101111245678888888877777899999999985555555444 3479999999999999988665 778888
Q ss_pred EeCC
Q 001176 1041 FDAE 1044 (1132)
Q Consensus 1041 wd~~ 1044 (1132)
++..
T Consensus 644 i~t~ 647 (794)
T PF08553_consen 644 IDTL 647 (794)
T ss_pred EEEe
Confidence 8863
No 376
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.21 E-value=0.058 Score=59.57 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=88.2
Q ss_pred CCeEEEEeC----------CCeEEEEEecCC----CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 417 GLMLGVAFS----------KHIVHLYTYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 417 g~~las~~~----------dg~i~iwd~~~~----~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
..+|++|+. .|.|.++++... ..++.... ....++|++++-- ++. ++++. .+.|.+|++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~ 115 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLD 115 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEcc
Confidence 467887743 289999999984 23433322 2357889998876 333 33333 4789999998
Q ss_pred CCe-EEEE-ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eE--EecCCCCeEEEEEEcCCCCEEEEEe
Q 001176 483 AGR-KQYT-FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RV--DYDAPGNWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 483 ~~~-~~~~-~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~--~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1132)
..+ .... +......+.++... + ++++.|.....+.++.++.... .. ........++++.+-++++.++.+
T Consensus 116 ~~~~l~~~~~~~~~~~i~sl~~~--~--~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~- 190 (321)
T PF03178_consen 116 NSKTLLKKAFYDSPFYITSLSVF--K--NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG- 190 (321)
T ss_dssp TTSSEEEEEEE-BSSSEEEEEEE--T--TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE-
T ss_pred CcccchhhheecceEEEEEEecc--c--cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE-
Confidence 877 4332 22233356666553 3 6899999999988886665333 22 223345578999998777766665
Q ss_pred cCCCCCCeEEEEeCC
Q 001176 558 TSKEGESHLVEWNES 572 (1132)
Q Consensus 558 ~~~~~~~~i~~wd~~ 572 (1132)
|.++.+.++...
T Consensus 191 ---D~~gnl~~l~~~ 202 (321)
T PF03178_consen 191 ---DKDGNLFVLRYN 202 (321)
T ss_dssp ---ETTSEEEEEEE-
T ss_pred ---cCCCeEEEEEEC
Confidence 347778887765
No 377
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.19 E-value=1 Score=54.94 Aligned_cols=199 Identities=13% Similarity=0.140 Sum_probs=115.2
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCC--------eEEEEeec--------------cCCccEEEEEecCCeEEEE
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP--------VYSVCPHH--------------KESIQFIFSTAIDGKIKAW 523 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~--------v~~i~~~~--------------~~~~~~l~s~s~dg~i~~w 523 (1132)
.++.++.++.|.-.|..+|+.+-++...... ...+.+.. ...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666777788888888888877665432110 11222221 1123578888999999999
Q ss_pred EcCCCCceEEecCCCCe------------EEEEEEcC--CCCEEEEEecCCC------CCCeEEEEeCCCCceeeeeccc
Q 001176 524 LYDYLGSRVDYDAPGNW------------CTMMAYSA--DGTRLFSCGTSKE------GESHLVEWNESEGAIKRTYSGF 583 (1132)
Q Consensus 524 d~~~~~~~~~~~~~~~~------------v~~~~~s~--~~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 583 (1132)
|.++++....+...+.. ...+.-+| .+..+++++...| ..+.|+-+|.++|+++..+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 99988877654321110 00111122 1345555543222 2688999999999988776521
Q ss_pred c----------------CCc-eEEEEEeCCCCEEEEEE------------------cCCeEEEEECCCCeeEEEEeCCCC
Q 001176 584 R----------------KRS-LGVVQFDTTRNRFLAAG------------------DEFQIKFWDMDNMNMLTTVDADGG 628 (1132)
Q Consensus 584 ~----------------~~~-v~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1132)
. ... -...+++++...++.+. ..+.|.-.|.++|+..-.++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 001 12345555555544421 134566778888888776654211
Q ss_pred -------CCCcceEEEcC-CCC---EEEEEeCCCcEEEEEcCCccee
Q 001176 629 -------LPASPRLRFNK-EGS---LLAVTTSDNGIKILANSDGVRL 664 (1132)
Q Consensus 629 -------~~~v~~~~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~~ 664 (1132)
.....-+.+.. +|+ .++.++.+|.+.++|-.+|+.+
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 00111122322 553 7889999999999999999433
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.17 Score=54.31 Aligned_cols=221 Identities=15% Similarity=0.100 Sum_probs=126.3
Q ss_pred EEcCCCCeEE-EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe
Q 001176 412 VWGPDGLMLG-VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 490 (1132)
Q Consensus 412 ~~spdg~~la-s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 490 (1132)
.|.++...|+ +--..+.|+-|+..+++.. .+. +.+.+.++..-..+. .|+++.. -+.+++.+++..+..+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~----~~~-~p~~~~~~~~~d~~g--~Lv~~~~--g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR----VFP-SPGGFSSGALIDAGG--RLIACEH--GVRLLDPDTGGKITLL 101 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE----EEE-CCCCcccceeecCCC--eEEEEcc--ccEEEeccCCceeEEe
Confidence 4667766444 4445778999998876432 122 333445555544444 4665543 4667777666553332
Q ss_pred cC----C-CCCeEEEEeeccCCccEEEEEec---------CCeEEEEEcC-CCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001176 491 EG----H-EAPVYSVCPHHKESIQFIFSTAI---------DGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 491 ~~----h-~~~v~~i~~~~~~~~~~l~s~s~---------dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
.. . ....+.+...|+ |.+.++... -..-.+|.++ .+........+-..-+.++||||++.|+.
T Consensus 102 ~~~~~~~~~~r~ND~~v~pd--G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPD--GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccccCCCCcCCCCceeEcCC--CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEE
Confidence 21 1 133445555554 344443333 0112455555 33344444443455678999999998887
Q ss_pred EecCCCCCCeEEEEeCCC--C----ceeeeeccccCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeeEEEEeCCCC
Q 001176 556 CGTSKEGESHLVEWNESE--G----AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTVDADGG 628 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~--~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~ 628 (1132)
+-. ..+.|+.|++.. + +....+.....+..-.++...+|.+.+++..+| .|.+|+.. ++++..+..+..
T Consensus 180 aDT---~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~ 255 (307)
T COG3386 180 ADT---PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK 255 (307)
T ss_pred EeC---CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC
Confidence 742 356788887652 1 111112212223455677888888776544443 99999998 999999887743
Q ss_pred CCCcceEEEcC-CCCEEEEEeC
Q 001176 629 LPASPRLRFNK-EGSLLAVTTS 649 (1132)
Q Consensus 629 ~~~v~~~~~s~-~~~~l~~~~~ 649 (1132)
.+.+++|-- +.+.|++.+.
T Consensus 256 --~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 256 --RPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred --CCccceEeCCCcCEEEEEec
Confidence 577788754 5565555544
No 379
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=97.16 E-value=0.00042 Score=64.91 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=71.5
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chhH
Q 001176 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1132)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1132)
++.. ++|+++.|.||+|+..|+.++|..||++.-..+...+.+++++|..+....++.+++....++. ++.+
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s 114 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDS 114 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHH
Confidence 4555 9999999999999999999999999998888887778889999998888887776666655544 3555
Q ss_pred HHHHHHHHHhhcccCcccccccCCCCCcchHHHHHHHHH
Q 001176 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQS 178 (1132)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~ 178 (1132)
-..|+..|++.=. .-.+-|..+|++.
T Consensus 115 ~~lL~~fL~~~~~-------------~g~~~ll~iin~~ 140 (142)
T PF04494_consen 115 FSLLLQFLQENEN-------------SGGSVLLRIINQH 140 (142)
T ss_dssp HHHHHHHHHHTTC-------------HTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCc-------------chHHHHHHHHHHH
Confidence 5666666665221 1123677777764
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.06 E-value=0.16 Score=56.53 Aligned_cols=85 Identities=12% Similarity=0.191 Sum_probs=61.2
Q ss_pred CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC-----------------CEE
Q 001176 538 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-----------------NRF 600 (1132)
Q Consensus 538 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~l 600 (1132)
...+.+++.+|++++.++. |.-|+|.++|+.++..++.++|..+..+.-+.....+ .+|
T Consensus 307 ~R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3467899999998877664 5688999999999999999999876433322222111 122
Q ss_pred E-EEEcCCeEEEEECCCCeeEEEEeCC
Q 001176 601 L-AAGDEFQIKFWDMDNMNMLTTVDAD 626 (1132)
Q Consensus 601 ~-~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1132)
+ -+-.-|.|.||.++.|..+..+...
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 2 2557899999999999888777643
No 381
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.18 Score=54.08 Aligned_cols=225 Identities=15% Similarity=0.108 Sum_probs=135.4
Q ss_pred EEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCC
Q 001176 348 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 427 (1132)
Q Consensus 348 ~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg 427 (1132)
+-.|.|+...++.+--..+.|.-|+..+++... | .+.+.+.++..-.++..|+++ ..|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~------~---------------~~p~~~~~~~~~d~~g~Lv~~-~~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV------F---------------PSPGGFSSGALIDAGGRLIAC-EHG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE------E---------------ECCCCcccceeecCCCeEEEE-ccc
Confidence 345778877777787788999999998775432 1 133344555554455555554 333
Q ss_pred eEEEEEecCCCceeeeeeee-cc-cCCEEEEEEecCCCcEEEEEEcCC----------CcEEEEECC-CCeEEEEecCCC
Q 001176 428 IVHLYTYNPTGELRQHLEID-AH-VGGVNDIAFAHPNKQLCIVTCGDD----------KMIKVWDVV-AGRKQYTFEGHE 494 (1132)
Q Consensus 428 ~i~iwd~~~~~~~~~~~~l~-~h-~~~v~~v~~s~d~~~~~l~s~~~d----------g~v~vwd~~-~~~~~~~~~~h~ 494 (1132)
+.+++.+++.......... +. ...-+.+...|+|. +..+... ..-.+|.+. .+..++.+..+-
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~---~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~ 162 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR---IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL 162 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC---EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE
Confidence 6777776555422222211 11 23567888999998 3333333 111344444 566666666666
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCC-----CCc--eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----LGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-----~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
..-++|+|+|++. .++++=+..+.|.-|++.. ... ...+....+..-.++...+|.+-+++.. +.+.|.
T Consensus 163 ~~~NGla~SpDg~-tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~ 238 (307)
T COG3386 163 TIPNGLAFSPDGK-TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVV 238 (307)
T ss_pred EecCceEECCCCC-EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEE
Confidence 6778999998763 4445555568888887762 111 1222233455566777778887754432 224799
Q ss_pred EEeCCCCceeeeeccccCCceEEEEEe-CCCCEEEEEE
Q 001176 568 EWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 604 (1132)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 604 (1132)
+|+.. |+++..+..... .+++++|- ++.+.|++.+
T Consensus 239 ~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 239 RFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 99988 999888887754 56777775 4445555544
No 382
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.98 E-value=0.11 Score=53.11 Aligned_cols=200 Identities=15% Similarity=0.123 Sum_probs=121.0
Q ss_pred CeeEEEEeeCCCEEEEee-CC--eEEEEECCCCeEEEEeeCCCC-CeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceee
Q 001176 839 SAACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 914 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s-dg--~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 914 (1132)
-...+.|..+|.++-+.+ -| .|+.+|+.+++......-... ---.++... .++....-.++...+||..+-+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceEE
Confidence 345688888888887776 44 599999999988766543321 223455554 345555667899999999999888
Q ss_pred eeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeE
Q 001176 915 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 994 (1132)
Q Consensus 915 ~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v 994 (1132)
.++.- .+.=+.|+ .|++.|+.+.....+.++|.++.+.... |
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~-----------------------------------i 165 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT-----------------------------------I 165 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE-----------------------------------E
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEE-----------------------------------E
Confidence 88863 45667787 4677777777777899999887553221 1
Q ss_pred EEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCcccccccc----CCCCCCc
Q 001176 995 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV----SSNTAHP 1070 (1132)
Q Consensus 995 ~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~v 1070 (1132)
.|.+ .+.. -..++-+.+- +|...|=.-....|...|..+|+....+......+.... .....-.
T Consensus 166 ~V~~-~g~p----------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 166 QVTD-NGRP----------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp E-EE-TTEE-------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred EEEE-CCEE----------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee
Confidence 1111 0001 2235555554 677777666777888899999998877654432221100 0112445
Q ss_pred EEEEeCCCCCCeEEEEeCCC
Q 001176 1071 LVIAPHPSEPNQIALGMSDG 1090 (1132)
Q Consensus 1071 ~~~~~~p~~~~~l~s~~~Dg 1090 (1132)
-.++|.|..+++++||-.=-
T Consensus 234 NGIAyd~~~~~l~vTGK~Wp 253 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTGKLWP 253 (264)
T ss_dssp EEEEEETTTTEEEEEETT-S
T ss_pred EeEeEeCCCCEEEEEeCCCC
Confidence 58999997777888775433
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.034 Score=60.78 Aligned_cols=145 Identities=13% Similarity=0.093 Sum_probs=101.1
Q ss_pred eEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCE-------EEEEcCCCcEEEEECCCcccccceeeeCCC
Q 001176 893 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA-------LVSSGADAQLCMWSIDKWEKLKSRFIQAPA 965 (1132)
Q Consensus 893 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~-------l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~ 965 (1132)
+|.++.....++-.|+..|+.+....-|.+ |+-+.+.|+++. -+.|-.|..|.-||+.-.... .+....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence 344566667899999999999999987777 777888887642 223556888999998743321 122222
Q ss_pred CCCC-CCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001176 966 GRQS-PLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1044 (1132)
Q Consensus 966 ~~~~-~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~ 1044 (1132)
++.- ....-.|.+-..+|..++.+.+|.|++||-.+...++..++ ...+|+.+..+.||++|++.+ +.++.+-++.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPg--LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPG--LGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccc--cCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 2211 11345677777788766668899999999866665555443 488999999999999987554 7788777754
No 384
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.84 E-value=0.24 Score=54.66 Aligned_cols=217 Identities=12% Similarity=0.133 Sum_probs=116.9
Q ss_pred CeEEEEEecCCCceeeeeeeecccCCEEEEE---EecCC--CcEEEEEEcC----------CCcEEEEECCCC----eEE
Q 001176 427 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIA---FAHPN--KQLCIVTCGD----------DKMIKVWDVVAG----RKQ 487 (1132)
Q Consensus 427 g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~---~s~d~--~~~~l~s~~~----------dg~v~vwd~~~~----~~~ 487 (1132)
..|++.|..+.+.+. ...+..+. .+.+++ |..+. +..+|+.|+. .|.|.++++.+. ..+
T Consensus 2 s~i~l~d~~~~~~~~-~~~l~~~E-~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLD-SFELEPNE-HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEE-EEEEETTE-EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEE-EEECCCCc-eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 357888887776553 33454332 344443 33221 1226666542 288999999884 122
Q ss_pred EEe--cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 488 YTF--EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 488 ~~~--~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
..+ ....++|++++.. + ..|+ ++..+.|.+|++...+....... ....+.++... +++++.+.. .
T Consensus 80 ~~i~~~~~~g~V~ai~~~---~-~~lv-~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~----~ 148 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSF---N-GRLV-VAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDA----M 148 (321)
T ss_dssp EEEEEEEESS-EEEEEEE---T-TEEE-EEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEES----S
T ss_pred EEEEEEeecCcceEhhhh---C-CEEE-EeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEc----c
Confidence 221 2357889999864 2 3433 33458999999988772222211 22255555544 557777743 3
Q ss_pred CeEEEE--eCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------C--eeEEEEeCCCCCCCc
Q 001176 564 SHLVEW--NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-------M--NMLTTVDADGGLPAS 632 (1132)
Q Consensus 564 ~~i~~w--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~--~~~~~~~~~~~~~~v 632 (1132)
..+.++ +....+....-.......+.++.|-++++.++++..+|.+.++.... + +.......|-+ ..|
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v 227 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG-DIV 227 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-E
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC-Ccc
Confidence 335555 54333233222222233678888886767899999999999998762 2 22222222222 246
Q ss_pred ceE---EEcC--CC------CEEEEEeCCCcEEEEE
Q 001176 633 PRL---RFNK--EG------SLLAVTTSDNGIKILA 657 (1132)
Q Consensus 633 ~~~---~~s~--~~------~~l~~~~~dg~i~iw~ 657 (1132)
+++ .+.| .+ ..++.++.+|.|...-
T Consensus 228 ~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 228 NSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp EEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred ceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 666 4444 12 2488888999998543
No 385
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0046 Score=68.82 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=76.9
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCee-EEEEcCCCCEEEEEcCCCcEEEEECCCccccc
Q 001176 879 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 957 (1132)
Q Consensus 879 ~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~ 957 (1132)
..|.-+.|+| .-.++|++..+|.|-++.+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.++..+.
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577899999 88999999999999999987 788888887888888 99999999999999999999999999987654
Q ss_pred ceeeeCCCCCCCCCCCceeEEEC
Q 001176 958 SRFIQAPAGRQSPLVGETKVQFH 980 (1132)
Q Consensus 958 ~~~~~~~~~~~~~~~~v~~~~~s 980 (1132)
...... ...+..+.|+
T Consensus 99 ~~~~s~-------e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSV-------ETDISKGIWD 114 (665)
T ss_pred cccccc-------ccchheeecc
Confidence 431111 1456677776
No 386
>PRK10115 protease 2; Provisional
Probab=96.82 E-value=1.9 Score=52.69 Aligned_cols=244 Identities=10% Similarity=0.048 Sum_probs=120.5
Q ss_pred CeEEEEEcCCCCeEEEEeC-----CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC-----CcE
Q 001176 407 SVNRCVWGPDGLMLGVAFS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMI 476 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~-----dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----g~v 476 (1132)
.+..+.|||||++||.+.. ...|++-|+.++..+.. .+.+ . -..++|++|++. ++++...+ ..|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCEE
Confidence 5677899999999987633 23588999988753321 1211 1 145999999985 33443322 478
Q ss_pred EEEECCCC--eEEEEecCCCCCeEEEEeeccCCccEEEEEec---CCeEEEEEcCC--CCceEEecCCCCeEEEEEEcCC
Q 001176 477 KVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDY--LGSRVDYDAPGNWCTMMAYSAD 549 (1132)
Q Consensus 477 ~vwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~~wd~~~--~~~~~~~~~~~~~v~~~~~s~~ 549 (1132)
+.+++.++ +....+........ +......++.+++..+. ++.+.+++... ......+.........+. ..
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 278 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY- 278 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-
Confidence 88898887 33334443333333 22222334455544433 34688888532 222222322223323332 22
Q ss_pred CCEEEEEecCCCCCCeEEEEeCC-CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CeeEEEEeCCC
Q 001176 550 GTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADG 627 (1132)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~ 627 (1132)
+..+...+..+.....|...++. .++....+.......+..+.+.. +..+++...+|.-+++-+.. +..+..+....
T Consensus 279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~ 357 (686)
T PRK10115 279 QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIAFDD 357 (686)
T ss_pred CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEecCCC
Confidence 33444333222224445555655 23222222222233577777773 33444555666655554432 22334333111
Q ss_pred CCCCcceEEEc--CCCC-EEEEEeC---CCcEEEEEcCCc
Q 001176 628 GLPASPRLRFN--KEGS-LLAVTTS---DNGIKILANSDG 661 (1132)
Q Consensus 628 ~~~~v~~~~~s--~~~~-~l~~~~~---dg~i~iw~~~~~ 661 (1132)
. ..+..+.++ +++. ++++.++ -+.+..+|..++
T Consensus 358 ~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 358 P-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred C-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 1 112223344 3333 4443333 457778887765
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.79 E-value=0.34 Score=51.72 Aligned_cols=193 Identities=12% Similarity=0.089 Sum_probs=93.7
Q ss_pred eEEEEeeCCCEEEEeeCCeEEEEECCCCeEE-EEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecc
Q 001176 841 ACIALSKNDSYVMSASGGKVSLFNMMTFKVM-TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 919 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 919 (1132)
..+....++..++++..|.|.. ..+.|+.- .......+.+..+..++ +|++++++..-....-||--...-...-..
T Consensus 107 ~~i~~l~~~~~~l~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~ 184 (302)
T PF14870_consen 107 FGITALGDGSAELAGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRN 184 (302)
T ss_dssp EEEEEEETTEEEEEETT--EEE-ESSTTSSEEEEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--
T ss_pred eEEEEcCCCcEEEEcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccC
Confidence 3344444444444444444322 12223221 22334457788899999 899998875555555676432111111222
Q ss_pred ccCCeeEEEEcCCCCEEEEEcCCCcEEEEE-CCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEe
Q 001176 920 HQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD 998 (1132)
Q Consensus 920 h~~~V~~l~~spdg~~l~s~~~D~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd 998 (1132)
-..+|..|.|+|++.+.+.+ ..|.|++=+ ....+.-......... ....+..++|.+++...+++..|.+.+=.
T Consensus 185 ~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~----~~~~~ld~a~~~~~~~wa~gg~G~l~~S~ 259 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKT----NGYGILDLAYRPPNEIWAVGGSGTLLVST 259 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EEEES
T ss_pred ccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCccc----CceeeEEEEecCCCCEEEEeCCccEEEeC
Confidence 45789999999998876654 788888877 2222211111111101 11457899999999988888888665533
Q ss_pred CCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001176 999 SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1041 (1132)
Q Consensus 999 ~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vw 1041 (1132)
-.++.-..-............|.|.++.+-++.| .+|.|--|
T Consensus 260 DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 260 DGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp STTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 3444433333222235678899998776666655 48877554
No 388
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.75 E-value=0.0034 Score=43.19 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=34.3
Q ss_pred ceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001176 911 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949 (1132)
Q Consensus 911 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd 949 (1132)
++....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778999999999999999999999999999996
No 389
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.041 Score=60.17 Aligned_cols=144 Identities=11% Similarity=0.117 Sum_probs=98.1
Q ss_pred CcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEE-----EEEecCCeEEEEEcCCCCc-eE-Eec
Q 001176 463 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-----FSTAIDGKIKAWLYDYLGS-RV-DYD 535 (1132)
Q Consensus 463 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-----~s~s~dg~i~~wd~~~~~~-~~-~~~ 535 (1132)
..+++.++.....++-.|++.|+.+.+++-+.. |+-+.+.|+..+..+ +.|-.|+.|.-||++-... .. ...
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 344677777778899999999999999987776 777777776554443 4466788999999986544 11 111
Q ss_pred CC----CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 001176 536 AP----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 611 (1132)
Q Consensus 536 ~~----~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 611 (1132)
.+ .....|.+-..+| ++++++. +|-|++||--.......+.+... +|..+..+.+|+++++.+ +..+.+
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~----~GdIRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc-~tyLlL 496 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSL----KGDIRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATC-KTYLLL 496 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeec----CCcEEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEec-ccEEEE
Confidence 11 2244556655555 6666765 66699999733334445666665 899999999999988776 445555
Q ss_pred EEC
Q 001176 612 WDM 614 (1132)
Q Consensus 612 wd~ 614 (1132)
.+.
T Consensus 497 i~t 499 (644)
T KOG2395|consen 497 IDT 499 (644)
T ss_pred EEE
Confidence 543
No 390
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0064 Score=67.74 Aligned_cols=92 Identities=13% Similarity=0.259 Sum_probs=78.2
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeE-EEEEeCCCCCeEEEEeCCCcEEEEEcccceee
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT-FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 914 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 914 (1132)
...+.-+.|+|.-.++|.+. +|.|.+..+. .+.+.++..|...++ +++|.| ||++||+|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 45678899999999999998 8999999988 888899988888887 999999 8999999999999999999998766
Q ss_pred eee-ccccCCeeEEEEc
Q 001176 915 TKL-KGHQNRITGLAFS 930 (1132)
Q Consensus 915 ~~l-~~h~~~V~~l~~s 930 (1132)
... ..-...|.++-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 552 2244567777776
No 391
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.69 E-value=0.048 Score=65.21 Aligned_cols=146 Identities=12% Similarity=0.158 Sum_probs=98.0
Q ss_pred CCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCC-eEEEEeecc---CCccEEEEEecCCeEEEEEcCCCCceEE-ec-
Q 001176 462 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-VYSVCPHHK---ESIQFIFSTAIDGKIKAWLYDYLGSRVD-YD- 535 (1132)
Q Consensus 462 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~-v~~i~~~~~---~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~- 535 (1132)
.+.++|........|+-.|++.|+.+..+..|... |..++-... -...-.+.|-.++.+..||.+-.+.... -.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33334455556789999999999999999887754 776653211 0123456788889999999987653221 11
Q ss_pred ---CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 001176 536 ---APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 612 (1132)
Q Consensus 536 ---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 612 (1132)
.......|++-+.+| +||+|+. +|.|++||--..+....+.+... +|..+..+.||+++++.+ +..+.++
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~----~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSN----KGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeC----CCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEee-cceEEEE
Confidence 123467788888877 4555653 77799999433333344555555 899999999999988876 4456666
Q ss_pred EC
Q 001176 613 DM 614 (1132)
Q Consensus 613 d~ 614 (1132)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 54
No 392
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.64 E-value=0.14 Score=44.58 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=66.6
Q ss_pred eEEEEEcC---CC-CeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 408 VNRCVWGP---DG-LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 408 V~~v~~sp---dg-~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
|+++++.. || +.|++|+.|..|++|+-+. .+. ++. -.+.|++++-...+ .++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGG---RFAYALANGTVGVYDR-- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCC---EEEEEecCCEEEEEeC--
Confidence 56666655 33 4899999999999998553 222 333 34578888877765 4888999999999983
Q ss_pred CeEEEEecCCCCCeEEEE-eeccCCc-cEEEEEecCCeEE
Q 001176 484 GRKQYTFEGHEAPVYSVC-PHHKESI-QFIFSTAIDGKIK 521 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~-~~~~~~~-~~l~s~s~dg~i~ 521 (1132)
...+...+.... +.+++ +..+++| .-|++|-.+|.|-
T Consensus 71 ~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333444544333 55554 4444443 3577887777764
No 393
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.59 E-value=0.51 Score=51.70 Aligned_cols=238 Identities=14% Similarity=0.110 Sum_probs=105.2
Q ss_pred CCceEEeec-ccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee--
Q 001176 780 SGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-- 856 (1132)
Q Consensus 780 ~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-- 856 (1132)
+.++|++.+ ..+.|.|.|+.+....|.-..+.. ...+... .+ -..-..+-.-|+|..++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe---------~~ev~~k--~g----~s~PHT~Hclp~G~imIS~lGd 150 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIE---------PEEVFEK--TG----LSRPHTVHCLPDGRIMISALGD 150 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE----------HHHHHHH--H-----EEEEEEEEE-SS--EEEEEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeC---------HHHHHhh--cC----CCCCceeeecCCccEEEEeccC
Confidence 456677666 568899999875444332111100 0000000 00 01112233347888888762
Q ss_pred -C----CeEEEEECCCCeEEEEeeCCCC---CeEEEEEeCCCCCeEEEEe--------------------CCCcEEEEEc
Q 001176 857 -G----GKVSLFNMMTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGM--------------------EDSSVQIYNV 908 (1132)
Q Consensus 857 -d----g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~sp~~~~~lasg~--------------------~dg~v~iwd~ 908 (1132)
+ |.+.++|-++.+.........+ --..+-|.| ..+.++|.. .-.++.+||+
T Consensus 151 ~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~ 229 (461)
T PF05694_consen 151 ADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW 229 (461)
T ss_dssp TTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET
T ss_pred CCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC
Confidence 2 4599999998888887765332 245677788 667777654 2357999999
Q ss_pred ccceeeeeeccccC--CeeEEEEcCC--CCE-EEEEcCCCcEEEEEC-CCcccccceeeeCCCC----CCCC--------
Q 001176 909 RVDEVKTKLKGHQN--RITGLAFSPT--LNA-LVSSGADAQLCMWSI-DKWEKLKSRFIQAPAG----RQSP-------- 970 (1132)
Q Consensus 909 ~~~~~~~~l~~h~~--~V~~l~~spd--g~~-l~s~~~D~~i~iwd~-~~~~~~~~~~~~~~~~----~~~~-------- 970 (1132)
.+.+.++++.--.. -...|.|..+ ..+ ++.+.-.++|..|-- +.++=.....+..... -.-+
T Consensus 230 ~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~ 309 (461)
T PF05694_consen 230 STRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGA 309 (461)
T ss_dssp TTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred CCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccccc
Confidence 99999998864332 3556777544 443 333334444544433 3332111222222111 1000
Q ss_pred -CCCceeEEECCCCcEEEEE--eCCeEEEEeC-C---CCceeecCCC-------------CCCCCCeEEEEEccCCCEEE
Q 001176 971 -LVGETKVQFHNDQTHLLVV--HESQISVYDS-K---LECSRSWSPK-------------DALPAPISSAIYSCDGLLVY 1030 (1132)
Q Consensus 971 -~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~-~---~~~~~~~~~~-------------~~h~~~i~~i~~s~dg~~la 1030 (1132)
..-++.+.+|.|.++|.++ ..|.|+.||+ + .+...+...+ ....+...-+..|-||++|+
T Consensus 310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 1357899999999999996 4899999999 2 2222221111 01122346788999999987
Q ss_pred EEe
Q 001176 1031 AGF 1033 (1132)
Q Consensus 1031 s~~ 1033 (1132)
..+
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 765
No 394
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.56 E-value=0.49 Score=51.83 Aligned_cols=150 Identities=12% Similarity=0.081 Sum_probs=74.2
Q ss_pred CccEEEEEe-cCCeEEEEEcCCCC-c---eEEecC---C--C--CeEEEEEEcCCCCEEEEEecC--CCCCCeEEEEeCC
Q 001176 507 SIQFIFSTA-IDGKIKAWLYDYLG-S---RVDYDA---P--G--NWCTMMAYSADGTRLFSCGTS--KEGESHLVEWNES 572 (1132)
Q Consensus 507 ~~~~l~s~s-~dg~i~~wd~~~~~-~---~~~~~~---~--~--~~v~~~~~s~~~~~l~~~~~~--~~~~~~i~~wd~~ 572 (1132)
+.++|+..+ ..+.|.+.|+.+.- . ...+.. . . .....+-.-|+|+.++++-.+ +++.+-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666666 67889999987432 1 122221 0 0 123344456899998877543 3456678999988
Q ss_pred CCceeeeeccccC--CceEEEEEeCCCCEEEEEE--------------------cCCeEEEEECCCCeeEEEEeCCCCCC
Q 001176 573 EGAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAG--------------------DEFQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 573 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
+.+.......... ..-..+.+.|..+.+++.. ....+.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 8888777765432 1244577888888888753 14579999999999999998764322
Q ss_pred CcceEEEcCC--CCEEEEEe-CCCcEEEE
Q 001176 631 ASPRLRFNKE--GSLLAVTT-SDNGIKIL 656 (1132)
Q Consensus 631 ~v~~~~~s~~--~~~l~~~~-~dg~i~iw 656 (1132)
....+.|..+ ..+=++++ -..+|..|
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEE
Confidence 3456777653 44433333 23344444
No 395
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.52 E-value=1.3 Score=49.40 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=56.9
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCC-eEEEEEeCCCC----------------C-eEEEE
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDN----------------N-IIAIG 897 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~----------------~-~lasg 897 (1132)
...+.+++.+|++++.|+.+ -|.|.++|+.++..++.++|-.+. +.-+....... . +++.+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 56688999999999888876 499999999999988888875443 22121111011 1 33456
Q ss_pred eCCCcEEEEEcccceeeeeec
Q 001176 898 MEDSSVQIYNVRVDEVKTKLK 918 (1132)
Q Consensus 898 ~~dg~v~iwd~~~~~~~~~l~ 918 (1132)
-.-|.|.||.+.+|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 677889999998887665543
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.52 E-value=0.72 Score=48.55 Aligned_cols=151 Identities=16% Similarity=0.086 Sum_probs=89.3
Q ss_pred CeEEEEEeCCCCCeEEEEe-CCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEE-CCCccccc
Q 001176 880 AATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKWEKLK 957 (1132)
Q Consensus 880 ~i~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd-~~~~~~~~ 957 (1132)
.+.+.++++ +++.+|... .++.-.+|-...+.....+. -...++...|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~- 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE- 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce-
Confidence 688999999 676665544 33333444333333333321 223688889999988777777677777774 2332211
Q ss_pred ceeeeCCCCCCCCCCCceeEEECCCCcEEEEEe----CCeEEEEeC----CC--Cce-eecCCCCCCCCCeEEEEEccCC
Q 001176 958 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH----ESQISVYDS----KL--ECS-RSWSPKDALPAPISSAIYSCDG 1026 (1132)
Q Consensus 958 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~~v~vwd~----~~--~~~-~~~~~~~~h~~~i~~i~~s~dg 1026 (1132)
...+...... ..|..+.+||||.+++... ++.|.+--+ .+ ..+ ............++++.|.+++
T Consensus 102 ~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 102 PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 1112221110 1689999999999999832 677777765 22 011 1111111225689999999999
Q ss_pred CEEEEEecCCc
Q 001176 1027 LLVYAGFCDGA 1037 (1132)
Q Consensus 1027 ~~las~~~dg~ 1037 (1132)
.+++.+...+.
T Consensus 178 ~L~V~~~~~~~ 188 (253)
T PF10647_consen 178 TLVVLGRSAGG 188 (253)
T ss_pred EEEEEeCCCCC
Confidence 98777655443
No 397
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.51 E-value=0.0069 Score=41.57 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=34.1
Q ss_pred CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEE
Q 001176 868 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 907 (1132)
Q Consensus 868 ~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd 907 (1132)
+++...+..|...|.++.|.+ .+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 455677778899999999999 778999999999999996
No 398
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.50 E-value=0.36 Score=50.78 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=94.8
Q ss_pred CCeeEEEEeeCCCEEEEee--CCe--EEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEE-cccce
Q 001176 838 ESAACIALSKNDSYVMSAS--GGK--VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN-VRVDE 912 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s--dg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd-~~~~~ 912 (1132)
..+.+.++++||+.+|... ++. ++++... ....... ....++...|++ ++.+.+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887765 444 5555543 3222222 233788889999 677777777677777773 33332
Q ss_pred eee-eecc--ccCCeeEEEEcCCCCEEEEEc---CCCcEEEEECCCcccc----cceeeeCCCCCCCCCCCceeEEECCC
Q 001176 913 VKT-KLKG--HQNRITGLAFSPTLNALVSSG---ADAQLCMWSIDKWEKL----KSRFIQAPAGRQSPLVGETKVQFHND 982 (1132)
Q Consensus 913 ~~~-~l~~--h~~~V~~l~~spdg~~l~s~~---~D~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~d 982 (1132)
... .+.. -.+.|+.+.+||||..+|... .++.|.+=-+.....- .......... ....+..++|.++
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDD 176 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCC
Confidence 221 1211 112899999999999877655 4566776655322211 0011111111 1256889999999
Q ss_pred CcEEEEE--eCCeEEE-EeCCCCce
Q 001176 983 QTHLLVV--HESQISV-YDSKLECS 1004 (1132)
Q Consensus 983 g~~l~~~--~d~~v~v-wd~~~~~~ 1004 (1132)
+.+++.+ .+..+.. ....+...
T Consensus 177 ~~L~V~~~~~~~~~~~~v~~dG~~~ 201 (253)
T PF10647_consen 177 STLVVLGRSAGGPVVRLVSVDGGPS 201 (253)
T ss_pred CEEEEEeCCCCCceeEEEEccCCcc
Confidence 9988884 3443333 44444333
No 399
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.48 E-value=1.9 Score=47.54 Aligned_cols=113 Identities=20% Similarity=0.267 Sum_probs=59.6
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC----CCeE
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLML 420 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~l 420 (1132)
..++|+|.|||+ ++++ ...|.|++++ ..+.... .+ -++ ..+..........++++|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~--~v--~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKT--PV--ADL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECE--EE--EE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcc--ee--ccc--------ccccccccCCcccceeccccCCCCEEE
Confidence 578999999997 5655 4589999999 4443311 00 000 1123445668899999995 4433
Q ss_pred EEEeCC--------CeEEEEEecCCC-cee---ee-eeeec---ccCCEEEEEEecCCCcEEEEEEcCCC
Q 001176 421 GVAFSK--------HIVHLYTYNPTG-ELR---QH-LEIDA---HVGGVNDIAFAHPNKQLCIVTCGDDK 474 (1132)
Q Consensus 421 as~~~d--------g~i~iwd~~~~~-~~~---~~-~~l~~---h~~~v~~v~~s~d~~~~~l~s~~~dg 474 (1132)
++.+.. ..|.-|....+. .+. .+ ..+.. ....-..|+|.|||. +.++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 333321 245556665441 111 11 11111 233456799999995 555555443
No 400
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.45 E-value=0.75 Score=50.72 Aligned_cols=244 Identities=14% Similarity=0.112 Sum_probs=120.4
Q ss_pred eeEEEEeeCCCEEEEeeCCeEEEEECCCCeE---EEEe----eCCCCCeEEEEEeCC---CCCeEEEEeCC--------C
Q 001176 840 AACIALSKNDSYVMSASGGKVSLFNMMTFKV---MTMF----MSPPPAATFLAFHPQ---DNNIIAIGMED--------S 901 (1132)
Q Consensus 840 v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~---~~~~----~~~~~~i~~l~~sp~---~~~~lasg~~d--------g 901 (1132)
.++|+|.|||+++++-..|.|++++ ..+.. +..+ .........++|+|+ ++.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 5789999999888876699999999 44443 2222 123345789999992 24444444421 1
Q ss_pred cEEEEEcccc-------e-eeeeecc---ccCCeeEEEEcCCCCEEEEEcCCCc-------------EEEEECCCccccc
Q 001176 902 SVQIYNVRVD-------E-VKTKLKG---HQNRITGLAFSPTLNALVSSGADAQ-------------LCMWSIDKWEKLK 957 (1132)
Q Consensus 902 ~v~iwd~~~~-------~-~~~~l~~---h~~~V~~l~~spdg~~l~s~~~D~~-------------i~iwd~~~~~~~~ 957 (1132)
.|.-|.+..+ + .+..+.. .......|+|.|||.+.++.+..+. |.-.+.+. ....
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p~ 161 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIPA 161 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-T
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCCC
Confidence 3443444332 1 1112222 2223456999999988888775443 22222211 0000
Q ss_pred ceeeeCCCCCC-----CCCCCceeEEECCC-CcEEEE--EeCCeEEEEeC-CCCc------e----------eecCCC--
Q 001176 958 SRFIQAPAGRQ-----SPLVGETKVQFHND-QTHLLV--VHESQISVYDS-KLEC------S----------RSWSPK-- 1010 (1132)
Q Consensus 958 ~~~~~~~~~~~-----~~~~~v~~~~~s~d-g~~l~~--~~d~~v~vwd~-~~~~------~----------~~~~~~-- 1010 (1132)
........+.. ........++|.|. |.+.++ +.+..-.|.-+ .+.. . ......
T Consensus 162 dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~ 241 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPG 241 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TT
T ss_pred CCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCC
Confidence 00000000000 01134568999999 777766 33333333222 1110 0 000000
Q ss_pred -------CCCCCCeEEEEEcc-------CCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeC
Q 001176 1011 -------DALPAPISSAIYSC-------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1076 (1132)
Q Consensus 1011 -------~~h~~~i~~i~~s~-------dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1076 (1132)
..+...++.+.|-. +|.++++.-..+.|....++++..+.... .........++.+++.
T Consensus 242 ~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~r~~~v~~~ 314 (331)
T PF07995_consen 242 FVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE-------EFLGGFGGRPRDVAQG 314 (331)
T ss_dssp S---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE-------EECTTSSS-EEEEEEE
T ss_pred cCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE-------EccccCCCCceEEEEc
Confidence 01234566666653 45566666666778887776543322111 1112444578899999
Q ss_pred CCCCCeEEEEeCCCcEE
Q 001176 1077 PSEPNQIALGMSDGAVH 1093 (1132)
Q Consensus 1077 p~~~~~l~s~~~Dg~i~ 1093 (1132)
| ||.+.++...+|+|.
T Consensus 315 p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 315 P-DGALYVSDDSDGKIY 330 (331)
T ss_dssp T-TSEEEEEE-TTTTEE
T ss_pred C-CCeEEEEECCCCeEe
Confidence 9 888888888888873
No 401
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.38 E-value=0.14 Score=44.46 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=64.4
Q ss_pred eeEEEEc---cCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 346 VMSMDFH---PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 346 V~~~~~s---pdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
|+++++. .||..-|++||.|..|+||+=.. .+.. ....+.|.++.-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE--------------------ITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence 4555544 46767799999999999998542 1111 114557777777666 66888
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec---CCCcEEEEEEcCCCcEE
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIK 477 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~---d~~~~~l~s~~~dg~v~ 477 (1132)
+..+|+|-+|+-.. +..+ .+. +..+.++++.. ||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~-RlWR----iKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQ-RLWR----IKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcc-eeee----ecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99999999998543 2222 222 22355655533 3443 578887777664
No 402
>PHA02713 hypothetical protein; Provisional
Probab=96.29 E-value=0.42 Score=56.89 Aligned_cols=228 Identities=11% Similarity=0.033 Sum_probs=115.4
Q ss_pred eEEEEECCCCeEE--EEeeCCCCCeEEEEEeCCCCCeEEEEeCC------CcEEEEEccccee--eeeeccccCCeeEEE
Q 001176 859 KVSLFNMMTFKVM--TMFMSPPPAATFLAFHPQDNNIIAIGMED------SSVQIYNVRVDEV--KTKLKGHQNRITGLA 928 (1132)
Q Consensus 859 ~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~~~--~~~l~~h~~~V~~l~ 928 (1132)
.+..||..+.+-. ..+...... .+++. - ++.+++.|+.+ ..+..||..++.- +..+....... .+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~--~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF--SL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce--eE
Confidence 4677887765422 222211111 22333 2 56788888854 3477888776542 22222111111 12
Q ss_pred EcCCCCEEEEEcCCC-----cEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEe-C-----------
Q 001176 929 FSPTLNALVSSGADA-----QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-E----------- 991 (1132)
Q Consensus 929 ~spdg~~l~s~~~D~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d----------- 991 (1132)
..-+|+..+.||.++ ++..||..+.+ ...+....... .....+ .-+|+..++|+ +
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~---W~~~~~mp~~r---~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDK---WKMLPDMPIAL---SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCCe---EEECCCCCccc---ccccEE--EECCEEEEEeCCCccccccccccc
Confidence 233778888888764 47889987643 11111111110 111122 23566666542 2
Q ss_pred ------------CeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecC------CcEEEEeCCC-cceeccc
Q 001176 992 ------------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD------GAIGVFDAET-LRFRCRI 1052 (1132)
Q Consensus 992 ------------~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d------g~i~vwd~~~-~~~~~~~ 1052 (1132)
..+..||...+.-....+.. .......+..-+|+..+.|+.+ ..|..||.++ .+-...-
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 24778887444332222211 1112222223467777777654 2467888887 4432111
Q ss_pred CCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCC--cEEEEecCCCcccccCCCCCCCCCC
Q 001176 1053 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDG--AVHVVEPSDAELKWGGTPSQDNGPL 1115 (1132)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg--~i~vW~~~~~~~~~~~~~~~~~~~~ 1115 (1132)
. +|.. ....-.+.. ++.+.++||.|+ .+-.+|+.+.+ |..-.|++..++
T Consensus 498 ~----m~~~-----r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~~~~ 548 (557)
T PHA02713 498 T----TESR-----LSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHSNSY 548 (557)
T ss_pred c----cCcc-----cccceeEEE---CCEEEEEeeecceeehhhcCccccc--ccchhhhcCCce
Confidence 1 1111 011111222 678999999998 78888888877 887777766554
No 403
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.28 E-value=0.39 Score=56.89 Aligned_cols=232 Identities=11% Similarity=0.018 Sum_probs=123.8
Q ss_pred CCCeEEEEeCCC------eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC------CcEEEEECCC
Q 001176 416 DGLMLGVAFSKH------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVA 483 (1132)
Q Consensus 416 dg~~las~~~dg------~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d------g~v~vwd~~~ 483 (1132)
.+.+++.||.++ .+..||..++.-. ....+. +...-.++++.. +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~-~~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWS-SLAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEe-ecCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 455667777663 5778888876322 111222 222334455543 44 78888888 3677888877
Q ss_pred CeEEE--EecC--CCCCeEEEEeeccCCccEEEEEecCCe-----EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 484 GRKQY--TFEG--HEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 484 ~~~~~--~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~-----i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
.+... .+.. +...+..+ +|.+.+.|+.||. +..||..+.+-...-......-..-...-+|+..+
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYI 432 (571)
T ss_pred CceeccCCccCccccceeEEE------CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEE
Confidence 76432 1111 11222222 4478889998875 66777766544332222222222222334677777
Q ss_pred EEecCCCCC--CeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeeEEEEeCCC
Q 001176 555 SCGTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDADG 627 (1132)
Q Consensus 555 ~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~ 627 (1132)
+||.++..+ ..+..||..+++....-.-.....-..++. -++...+.||.|+ +|..||..+.+....-....
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 777554432 678999998876443322211111111222 2456666677665 37788888776555432222
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCC-----cEEEEEcCCc
Q 001176 628 GLPASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 661 (1132)
Q Consensus 628 ~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~ 661 (1132)
....+..+. -++...++|+.|| +|..||..++
T Consensus 512 ~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 512 PRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccccEEE--ECCEEEEEecccCccccceeEEcCCCCC
Confidence 111111222 2566777888776 4556655444
No 404
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.053 Score=64.55 Aligned_cols=104 Identities=17% Similarity=0.199 Sum_probs=78.0
Q ss_pred CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
.+..++.|+..|.+...|+.+.-. ....=..-.++|++++|+.||+ .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~--~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG--PLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc--hhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 566789999999999988876421 1111112356999999999999 889999999999999999999999988888
Q ss_pred CeEEEEeecc-CCccEEEEEecCCeEEEEEc
Q 001176 496 PVYSVCPHHK-ESIQFIFSTAIDGKIKAWLY 525 (1132)
Q Consensus 496 ~v~~i~~~~~-~~~~~l~s~s~dg~i~~wd~ 525 (1132)
+.+++-+... +++..++++..-|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 8887765432 23346777776665 5644
No 405
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.08 E-value=3.3 Score=46.45 Aligned_cols=291 Identities=13% Similarity=0.158 Sum_probs=157.4
Q ss_pred CceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee-----CCCEEEEe
Q 001176 781 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-----NDSYVMSA 855 (1132)
Q Consensus 781 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~-----dg~~la~~ 855 (1132)
...+++|+..|.++||+-......+. ..++...+ ..+|..++.-+ +...||+-
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~----------------~lllE~~l------~~PILqv~~G~F~s~~~~~~LaVL 94 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE----------------DLLLETQL------KDPILQVECGKFVSGSEDLQLAVL 94 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc----------------cEEEEEec------CCcEEEEEeccccCCCCcceEEEe
Confidence 35689999999999997533222111 11222212 44666665432 34567776
Q ss_pred eCCeEEEEECCC--Ce-------EEEEeeCCCCC--eEEEEEeCC----CCCeEEEEeCCCcEEEEEcccceeeeeeccc
Q 001176 856 SGGKVSLFNMMT--FK-------VMTMFMSPPPA--ATFLAFHPQ----DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 920 (1132)
Q Consensus 856 sdg~i~vwd~~~--~~-------~~~~~~~~~~~--i~~l~~sp~----~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 920 (1132)
.-.++.||.+.. +. .+.....|.-. ...++.-|- +..++.+=+-||.+.+|+-+.......+..
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 678888888731 11 11222223222 233333332 246888899999999999766554444443
Q ss_pred cCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceee------eCC-CCCC-------CCC---CCceeEEECCCC
Q 001176 921 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI------QAP-AGRQ-------SPL---VGETKVQFHNDQ 983 (1132)
Q Consensus 921 ~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~------~~~-~~~~-------~~~---~~v~~~~~s~dg 983 (1132)
.--...+.+.+....+++++.+..+.-|....-........ ... .+.. .-+ ..+..+.++...
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~ 253 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSE 253 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCC
Confidence 22233478888888999999998888887632110000000 000 0000 000 122233444445
Q ss_pred cEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEc----cCCC---EEEEEecCCcEEEEeCCCcceecccCCCc
Q 001176 984 THLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYS----CDGL---LVYAGFCDGAIGVFDAETLRFRCRIGPSA 1056 (1132)
Q Consensus 984 ~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s----~dg~---~las~~~dg~i~vwd~~~~~~~~~~~~~~ 1056 (1132)
..+++-...++.+.+.+|.. +.....+ -.+.....|. .++. .++.++.++++.||.=.+..--+++.
T Consensus 254 ~~IvvLger~Lf~l~~~G~l-~~~krLd--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~--- 327 (418)
T PF14727_consen 254 SDIVVLGERSLFCLKDNGSL-RFQKRLD--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP--- 327 (418)
T ss_pred ceEEEEecceEEEEcCCCeE-EEEEecC--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC---
Confidence 55666667777777776533 2222222 1122112221 1222 47888999999998766554433331
Q ss_pred cccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccccCCCC
Q 001176 1057 YIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPS 1109 (1132)
Q Consensus 1057 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~~~~~ 1109 (1132)
|.--.+.++..++-...|++-+.+|.+.+-=+.|....+..|++
T Consensus 328 ---------~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~~p~~ 371 (418)
T PF14727_consen 328 ---------HVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQVPPL 371 (418)
T ss_pred ---------CCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCccccCCCc
Confidence 11111223322324579999999999999999887765555443
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.08 E-value=0.1 Score=58.26 Aligned_cols=158 Identities=14% Similarity=0.162 Sum_probs=92.5
Q ss_pred CCCeEEEEEeCCCCCeEEEEe--CCCcEEEEEcccceeeeeeccccCCeeEEEEcCCC----CEEEEEcCCCcEEEEECC
Q 001176 878 PPAATFLAFHPQDNNIIAIGM--EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL----NALVSSGADAQLCMWSID 951 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg----~~l~s~~~D~~i~iwd~~ 951 (1132)
-.++..++|.. +.+.+.+.- .+|.+++=| .+.+..| ..|.++.|+|-+ ..|........|.+|.+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 35688899985 555555542 334333322 2334444 458899999853 356667778889999986
Q ss_pred Cc--ccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeC--CCCceeecCCCCCCCCCeEEEEEccCC
Q 001176 952 KW--EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDG 1026 (1132)
Q Consensus 952 ~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~i~~s~dg 1026 (1132)
.. +..+...-+.-+-..+...-...+.|+|....|++- ....-.++++ +...++.=... .+.|.+.+|.+||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~---~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT---SGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC---CceEEEEEecCcC
Confidence 32 211111111111111111234578899999999883 3333345555 34443332222 7889999999999
Q ss_pred CEEEEEe-cCCcEEEEeCCCc
Q 001176 1027 LLVYAGF-CDGAIGVFDAETL 1046 (1132)
Q Consensus 1027 ~~las~~-~dg~i~vwd~~~~ 1046 (1132)
++|+++- ..=.-+|||-...
T Consensus 168 ~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CEEEEEeCCeEEEEEecCchh
Confidence 9876653 3345788997654
No 407
>PHA02713 hypothetical protein; Provisional
Probab=95.97 E-value=0.45 Score=56.57 Aligned_cols=201 Identities=6% Similarity=0.016 Sum_probs=99.8
Q ss_pred CCCcEEEEEEcCC------CcEEEEECCCCeEEEEecC---CCCCeEEEEeeccCCccEEEEEecCC-----eEEEEEcC
Q 001176 461 PNKQLCIVTCGDD------KMIKVWDVVAGRKQYTFEG---HEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYD 526 (1132)
Q Consensus 461 d~~~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~---h~~~v~~i~~~~~~~~~~l~s~s~dg-----~i~~wd~~ 526 (1132)
++. +++.||.+ ..+..||..+.... .+.. .......+.+ ++.+.+.||.++ .+..||..
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~ 375 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMG 375 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECC
Confidence 455 66667753 35778888776542 2211 1111111221 346777787654 47788887
Q ss_pred CCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC-------------------CCeEEEEeCCCCceeeeeccccCCc
Q 001176 527 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG-------------------ESHLVEWNESEGAIKRTYSGFRKRS 587 (1132)
Q Consensus 527 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-------------------~~~i~~wd~~~~~~~~~~~~~~~~~ 587 (1132)
+..-...-..........+..-+|+..+.||.++.. ...+..||..+.+....-.-... .
T Consensus 376 ~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r 454 (557)
T PHA02713 376 DDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-T 454 (557)
T ss_pred CCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc-c
Confidence 654332111111111111122356666666643210 24588899887654322211111 1
Q ss_pred eEEEEEeCCCCEEEEEEcC------CeEEEEECCC-CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCC--cEEEEEc
Q 001176 588 LGVVQFDTTRNRFLAAGDE------FQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN--GIKILAN 658 (1132)
Q Consensus 588 v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iw~~ 658 (1132)
.......-++...+.||.+ ..+..||..+ .+................++ -++++.++|+.+| .+..||.
T Consensus 455 ~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 455 IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcCc
Confidence 1111122345556666643 2467899887 45443322222111222222 3688888999888 7788888
Q ss_pred CCcceeeeeccccc
Q 001176 659 SDGVRLLRMLEGRA 672 (1132)
Q Consensus 659 ~~~~~~~~~~~~~~ 672 (1132)
.++ +.......|+
T Consensus 533 ~~~-~W~~~~~~~~ 545 (557)
T PHA02713 533 YTY-EWNHICHQHS 545 (557)
T ss_pred ccc-cccchhhhcC
Confidence 776 4443334443
No 408
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.92 E-value=1.7 Score=44.88 Aligned_cols=201 Identities=14% Similarity=0.153 Sum_probs=118.1
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcC-cccccCCCCCCCCCCeeEEEEe
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT-LMTNDINESKPTEESAACIALS 846 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~h~~~~v~~~~~s 846 (1132)
....+.++.|+|+.+.|++......-.|+= + ..|. +.+.++.+ -.....+.+.
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVEl---------------------t-~~GdlirtiPL~g----~~DpE~Ieyi 137 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVEL---------------------T-KEGDLIRTIPLTG----FSDPETIEYI 137 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEE---------------------e-cCCceEEEecccc----cCChhHeEEe
Confidence 445599999999999999888776555542 1 2233 33334444 3445678888
Q ss_pred eCCCEEEEee-CCeEEEEECCCCeEEEE-------eeC--C-CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce---
Q 001176 847 KNDSYVMSAS-GGKVSLFNMMTFKVMTM-------FMS--P-PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--- 912 (1132)
Q Consensus 847 ~dg~~la~~s-dg~i~vwd~~~~~~~~~-------~~~--~-~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~--- 912 (1132)
.+|+++++-- ++.+.++.+........ +.. + ...--.++|+| ..+.|..+-.-.=+.||.+..+.
T Consensus 138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence 8888887776 78888887765422211 111 2 44567899999 55555556555557777665332
Q ss_pred eeeeeccc-------cCCeeEEEEcCC-CCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCc
Q 001176 913 VKTKLKGH-------QNRITGLAFSPT-LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 984 (1132)
Q Consensus 913 ~~~~l~~h-------~~~V~~l~~spd-g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 984 (1132)
.+.....+ -..|.++.|.+. +.+|+-+..++.+.-.|....-...........|-.........+++.++|.
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 11111111 224677888764 5666767777777777776542111112222333222223456789999998
Q ss_pred EEEEEeCCeEE
Q 001176 985 HLLVVHESQIS 995 (1132)
Q Consensus 985 ~l~~~~d~~v~ 995 (1132)
.-+++.-+-.+
T Consensus 297 lYIvSEPnlfy 307 (316)
T COG3204 297 LYIVSEPNLFY 307 (316)
T ss_pred EEEEecCCcce
Confidence 77776544433
No 409
>PRK10115 protease 2; Provisional
Probab=95.90 E-value=6.4 Score=48.22 Aligned_cols=243 Identities=10% Similarity=0.020 Sum_probs=119.8
Q ss_pred CeeEEEEccCCCeEEEEEcCC----CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 345 NVMSMDFHPQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
.+..+.+||||++++.+-+.+ ..+++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 577889999999655554333 3588888887764321 0111 11469999999877
Q ss_pred EEEeCC------CeEEEEEecCCCc-eeeeeeeecccCCEE-EEEEecCCCcEEEEEEc-CCCcEEEEECC--CCeEEEE
Q 001176 421 GVAFSK------HIVHLYTYNPTGE-LRQHLEIDAHVGGVN-DIAFAHPNKQLCIVTCG-DDKMIKVWDVV--AGRKQYT 489 (1132)
Q Consensus 421 as~~~d------g~i~iwd~~~~~~-~~~~~~l~~h~~~v~-~v~~s~d~~~~~l~s~~-~dg~v~vwd~~--~~~~~~~ 489 (1132)
+....+ ..|..+++.++.. -.. .+........ .+..+.|++.+++.+.+ .++.+.+++.. ++.....
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l--v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL--VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE--EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 665432 3577788887732 111 2222223333 33334477753322222 34578888843 3442222
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEec---CCeEEEEEcCCCC-ceEEecCC-CCeEEEEEEcCCCCEEEEEecCCCCCC
Q 001176 490 FEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLG-SRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGES 564 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1132)
+..-......+. +. ++ .+++.... ...|...++.... ....+... ...+..+.+. ++.|+.... .++..
T Consensus 265 ~~~~~~~~~~~~-~~-~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~ 338 (686)
T PRK10115 265 LPRRKDHEYSLD-HY-QH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLT 338 (686)
T ss_pred EECCCCCEEEEE-eC-CC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEE
Confidence 221122222222 21 22 33333322 2234444444222 22233332 3367778876 345554432 13455
Q ss_pred eEEEEeCCCCceeeeec-cccCCceEEEEEe--CCCC-EEEEEE---cCCeEEEEECCCCe
Q 001176 565 HLVEWNESEGAIKRTYS-GFRKRSLGVVQFD--TTRN-RFLAAG---DEFQIKFWDMDNMN 618 (1132)
Q Consensus 565 ~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 618 (1132)
.+++++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 339 ~l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 339 SLRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 57777765433 33332 1111 22323344 3333 343332 45778888988764
No 410
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.025 Score=67.13 Aligned_cols=107 Identities=13% Similarity=0.234 Sum_probs=75.2
Q ss_pred CcEEEEE-eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCcccccc
Q 001176 983 QTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY 1061 (1132)
Q Consensus 983 g~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1061 (1132)
+.+++++ +.|.+...|.+++. ..+.....-.++|++++|+.||++++.|-.+|.|.+||+..++.+..+....
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL-~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~----- 172 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNL-GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG----- 172 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhccc-chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC-----
Confidence 4456664 56788888885542 2122222237899999999999999999999999999999999888776331
Q ss_pred ccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1062 AVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1062 ~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
.....++.+.+.. ++..++++..-|. +|++.=..
T Consensus 173 ---ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~lv~nk 206 (1206)
T KOG2079|consen 173 ---APVTGVIFVGRTS-QNSKLLTSDTGGS--FWKLVFNK 206 (1206)
T ss_pred ---CccceEEEEEEeC-CCcEEEEccCCCc--eEEEEech
Confidence 1124455666665 5567888877776 67664443
No 411
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.77 E-value=2.9 Score=43.20 Aligned_cols=192 Identities=10% Similarity=0.068 Sum_probs=114.8
Q ss_pred cccceEEEEEecCCceEEeecccc--eeEEEeeccccCCCCCccccccccccccCCCcCcccc-cCCCCCCCCCCeeEEE
Q 001176 768 AASKVVRLIYTNSGLSLLALASNA--VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTN-DINESKPTEESAACIA 844 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~h~~~~v~~~~ 844 (1132)
...-...+.|..+|..+-+.+.-| .++.+ |+.+|++... .+.. ..--..++
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~----------------------d~~tg~~~~~~~l~~----~~FgEGit 96 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKV----------------------DLETGKVLQSVPLPP----RYFGEGIT 96 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEE----------------------ETTTSSEEEEEE-TT----T--EEEEE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEE----------------------ECCCCcEEEEEECCc----cccceeEE
Confidence 345567888888888777777765 34444 4455554322 2222 33334566
Q ss_pred EeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccC--
Q 001176 845 LSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN-- 922 (1132)
Q Consensus 845 ~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-- 922 (1132)
...|.-+..+--++...+||..+.+.+.++.-. ++=..++. +++.|+..+....++++|..+.+...++.-..+
T Consensus 97 ~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~ 172 (264)
T PF05096_consen 97 ILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR 172 (264)
T ss_dssp EETTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE
T ss_pred EECCEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCE
Confidence 655544555555899999999999999988743 45566663 556666666677899999888776666543322
Q ss_pred ---CeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCC-------CCCCCCCCCceeEEECCCCcEEEEEe
Q 001176 923 ---RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP-------AGRQSPLVGETKVQFHNDQTHLLVVH 990 (1132)
Q Consensus 923 ---~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~s~dg~~l~~~~ 990 (1132)
.++-|.|- +|...|-.=....|...|..+|+.....-+..+ ..+.....-...||+.|.+..+.+..
T Consensus 173 pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 173 PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 35667775 677777777777788888888876553322111 11111124577999988887777644
No 412
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.74 E-value=0.03 Score=40.35 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=32.0
Q ss_pred CCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCccccc
Q 001176 1068 AHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1105 (1132)
Q Consensus 1068 ~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~ 1105 (1132)
..+..++|+| ..++||.|+.||.|.++++ ++++.|.
T Consensus 12 ~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qriw~ 47 (47)
T PF12894_consen 12 SRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQRIWS 47 (47)
T ss_pred CcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcCccC
Confidence 5688999999 7889999999999999999 7787764
No 413
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.61 E-value=1.5 Score=43.33 Aligned_cols=143 Identities=11% Similarity=0.068 Sum_probs=81.1
Q ss_pred cCCEEEEEEecCCCcEEEEEEc-CCCcEEEEECCCCeEEEEecCCC--------CCeEEEEeeccCCccEEEEEecCCeE
Q 001176 450 VGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQYTFEGHE--------APVYSVCPHHKESIQFIFSTAIDGKI 520 (1132)
Q Consensus 450 ~~~v~~v~~s~d~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~h~--------~~v~~i~~~~~~~~~~l~s~s~dg~i 520 (1132)
..+.++-..+|+|+ + +.|. .|-.- ......|..-.-+.+|. .--+.++|+.+ ...+.++-+.+-.|
T Consensus 108 knR~NDgkvdP~Gr--y-y~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--Y-YGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD-AKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCc--e-eeeeeccccc-cccccccEEEEeccCCCceeeehhccCCcccccccc-CcEEEEEccCceEE
Confidence 34566777889998 4 3332 12111 11112222222222332 23356677633 23566777788888
Q ss_pred EEEEcCC--CC-----ceEEecC----CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceE
Q 001176 521 KAWLYDY--LG-----SRVDYDA----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 589 (1132)
Q Consensus 521 ~~wd~~~--~~-----~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 589 (1132)
.-||.+- +. .+..+.. .....-.++...+|++.+++.. .++|...|+.+|+.+.++.-... .++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qit 257 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QIT 257 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceE
Confidence 8888432 21 1222211 1112233455667777777653 67899999999999999988766 799
Q ss_pred EEEEeCCC-CEEEE
Q 001176 590 VVQFDTTR-NRFLA 602 (1132)
Q Consensus 590 ~~~~~~~~-~~l~~ 602 (1132)
+++|.-.. ..+++
T Consensus 258 sccFgGkn~d~~yv 271 (310)
T KOG4499|consen 258 SCCFGGKNLDILYV 271 (310)
T ss_pred EEEecCCCccEEEE
Confidence 99997542 44444
No 414
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.61 E-value=5.2 Score=44.99 Aligned_cols=278 Identities=11% Similarity=0.142 Sum_probs=143.8
Q ss_pred cCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc---C--CCCeEEEEeCCC
Q 001176 353 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG---P--DGLMLGVAFSKH 427 (1132)
Q Consensus 353 pdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---p--dg~~las~~~dg 427 (1132)
++++..+++||.+|.++||+...++......+ +-..-+.+|..++.- + +...||+ =.-.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~ll---------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~ 97 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLL---------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHPR 97 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEE---------------EEEecCCcEEEEEeccccCCCCcceEEE-ecCC
Confidence 44555799999999999999965442211000 012234577777643 2 2335555 4566
Q ss_pred eEEEEEecCCCce------eeeeeeeccc--CCEEEEEEec----CCCcEEEEEEcCCCcEEEEECCCCeEEEEecC--C
Q 001176 428 IVHLYTYNPTGEL------RQHLEIDAHV--GGVNDIAFAH----PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--H 493 (1132)
Q Consensus 428 ~i~iwd~~~~~~~------~~~~~l~~h~--~~v~~v~~s~----d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--h 493 (1132)
.+.||.+...... .....+..|. .....++.-| .++. +|..-+-||.+.+++-+.-...+.+.+ .
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCCC
Confidence 7888887422111 1111222342 2233344433 2233 788889999999999554443444443 3
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCC--------------------c---eEEecCCCC--eEEEEEEcC
Q 001176 494 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--------------------S---RVDYDAPGN--WCTMMAYSA 548 (1132)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--------------------~---~~~~~~~~~--~v~~~~~s~ 548 (1132)
.+++ ++.+.. +.+++++.+..+..|....-. . ...+..... .+..+.++.
T Consensus 177 PgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~ 251 (418)
T PF14727_consen 177 PGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSS 251 (418)
T ss_pred CcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCC
Confidence 3443 444444 678889888888888642110 0 001111111 233333433
Q ss_pred CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC----CC---CEEEEEEcCCeEEEEECCCCeeEE
Q 001176 549 DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT----TR---NRFLAAGDEFQIKFWDMDNMNMLT 621 (1132)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1132)
....+++-+ ...+.+.+. +|......+-... +.....|.. ++ ..++.++.++.+.||.=. +++.
T Consensus 252 ~~~~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~W 322 (418)
T PF14727_consen 252 SESDIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVW 322 (418)
T ss_pred CCceEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEE
Confidence 333444443 455777775 3544333222111 222222221 22 247888899999998633 3333
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 622 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
........-.+.-..|..-...|++-+.+|.+.+-=+-|.
T Consensus 323 sA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 323 SAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred ecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 3333211111222223333457888888999988766555
No 415
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.43 E-value=0.023 Score=55.53 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=57.4
Q ss_pred cEEEE-EeCCeEEEEeCC--CCceeecCCCCCCCCCeEE-EEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCcccc
Q 001176 984 THLLV-VHESQISVYDSK--LECSRSWSPKDALPAPISS-AIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIP 1059 (1132)
Q Consensus 984 ~~l~~-~~d~~v~vwd~~--~~~~~~~~~~~~h~~~i~~-i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 1059 (1132)
.-+++ +.+|.|.+|... +......... ...|.. +.-..++.+..+++.||.|+-|++.-++.+....
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~---~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g------ 141 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSG---EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG------ 141 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcc---cccceeccccccccceeEEeccCCceeeeccccCceeeeec------
Confidence 34555 678999999883 2222222211 222222 2223456688999999999999999988877664
Q ss_pred ccccCCCC-CCcEEEEeCCCCCCeEEEE--eCCCcEEEEecCC
Q 001176 1060 TYAVSSNT-AHPLVIAPHPSEPNQIALG--MSDGAVHVVEPSD 1099 (1132)
Q Consensus 1060 ~~~~~~~~-~~v~~~~~~p~~~~~l~s~--~~Dg~i~vW~~~~ 1099 (1132)
+|. .......-+. .+++|+.+ |.|..++.|++..
T Consensus 142 -----~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 142 -----QHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred -----cccCCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 332 1111222222 34455555 6666666666644
No 416
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.78 Score=44.38 Aligned_cols=190 Identities=16% Similarity=0.122 Sum_probs=108.3
Q ss_pred CCCEEEEee---CCeEEEEECCCCeEEEEeeCCCCCeEE--EEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccC
Q 001176 848 NDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATF--LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 922 (1132)
Q Consensus 848 dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~--l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 922 (1132)
+|.++.+.+ ...|++||+.+++.+..-.-....+.. +.-. +..+.+-.-.+|.-++||..+-+++.++. ..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 556666655 356999999999887665432222211 1111 22344445578889999999988888776 344
Q ss_pred CeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCC
Q 001176 923 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1002 (1132)
Q Consensus 923 ~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~ 1002 (1132)
.-++++ .|+..|+.+....++++-|.++..... .+....+|.
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~------------------~v~VT~~g~------------------ 173 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELD------------------TVQVTDDGV------------------ 173 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHHhhhcc------------------eEEEEECCe------------------
Confidence 445655 366667777777778877777644221 111111221
Q ss_pred ceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCcccccccc-CCCCCCcEEEEeCCCCCC
Q 001176 1003 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV-SSNTAHPLVIAPHPSEPN 1081 (1132)
Q Consensus 1003 ~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~ 1081 (1132)
.+ ..++.+.| -||.+.|-.-.+..|...+.++|+.+..+..+...+.... ..|..-.-.+++.|+.++
T Consensus 174 pv----------~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r 242 (262)
T COG3823 174 PV----------SKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDR 242 (262)
T ss_pred ec----------ccccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCe
Confidence 00 11111222 2555556555566666677777777666554433222211 233345558999997778
Q ss_pred eEEEEeCC
Q 001176 1082 QIALGMSD 1089 (1132)
Q Consensus 1082 ~l~s~~~D 1089 (1132)
++++|-.=
T Consensus 243 ~~iTGK~w 250 (262)
T COG3823 243 FLITGKLW 250 (262)
T ss_pred EEEecCcC
Confidence 88887543
No 417
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.42 E-value=0.043 Score=53.76 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=71.2
Q ss_pred CCEEEEee-CCeEEEEECCCC-eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecccc-CCee
Q 001176 849 DSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRIT 925 (1132)
Q Consensus 849 g~~la~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~ 925 (1132)
+.-+++|. +|.|.+|+..-. .....+..-...|.++.-.-+++.+..++..||.|+.|++.-++.+...-.|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 44566665 999999987632 11111222223344433333356688999999999999999998888887787 5666
Q ss_pred EEEEcCCCCEEEEE--cCCCcEEEEECCC
Q 001176 926 GLAFSPTLNALVSS--GADAQLCMWSIDK 952 (1132)
Q Consensus 926 ~l~~spdg~~l~s~--~~D~~i~iwd~~~ 952 (1132)
.+..+..+..++.+ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66666677777777 7788888888765
No 418
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.41 E-value=2 Score=50.99 Aligned_cols=233 Identities=10% Similarity=0.034 Sum_probs=117.4
Q ss_pred EEEEEcCC------CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC-C---
Q 001176 358 ILLVGTNV------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK-H--- 427 (1132)
Q Consensus 358 lla~g~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d-g--- 427 (1132)
+++.|+.+ ..+..+|..++....... +. +...-.+++.. +|...++||.| |
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-----------------m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-----------------MP-SPRCRVGVAVL-NGKLYVVGGYDSGSDR 347 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCC-----------------CC-cccccccEEEE-CCEEEEEccccCCCcc
Confidence 67777766 367788877764332111 11 11122233333 56888889888 3
Q ss_pred --eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC-----cEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 428 --IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-----MIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 428 --~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg-----~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
++..||..+++ ......+........... -+|. +.|.||.|| +|-.||..+.+.-..- .......+.
T Consensus 348 l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~--l~g~--iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~ 421 (571)
T KOG4441|consen 348 LSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAV--LDGK--LYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGH 421 (571)
T ss_pred cceEEEecCCCCc-eeccCCccCccccceeEE--ECCE--EEEEeccccccccccEEEecCCCCcccccC-CCCcceeee
Confidence 57788887765 222222222222222222 2465 788899887 5677887766532211 111122222
Q ss_pred EeeccCCccEEEEEecCC------eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC-CCCCeEEEEeCCC
Q 001176 501 CPHHKESIQFIFSTAIDG------KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESE 573 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~ 573 (1132)
....- +|.+.++|+.++ ++..||..+..-...-.....+...-+..-++...+.||.++ .....+..||..+
T Consensus 422 gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 422 GVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred EEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCC
Confidence 21111 447788888655 466788776654443222222111112234566666666533 1233478899887
Q ss_pred Cceeeee--ccccCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCee
Q 001176 574 GAIKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNM 619 (1132)
Q Consensus 574 ~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 619 (1132)
.+....- ..... .+..+. -++...++||.|| +|..||..+.+.
T Consensus 501 ~~W~~v~~m~~~rs-~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 501 NQWTMVAPMTSPRS-AVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred CceeEcccCccccc-cccEEE--ECCEEEEEecccCccccceeEEcCCCCCce
Confidence 6654331 11111 122122 2355566677654 355666655543
No 419
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.36 E-value=3.7 Score=42.77 Aligned_cols=206 Identities=16% Similarity=0.195 Sum_probs=118.5
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEEcc------cc-eeeeeecc-----ccCCeeEEEEcCCCCE------------E
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVR------VD-EVKTKLKG-----HQNRITGLAFSPTLNA------------L 936 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd~~------~~-~~~~~l~~-----h~~~V~~l~~spdg~~------------l 936 (1132)
-..|+|+| .+.+-++....+...+||.. .. .++-.+.. -....+.+.|+....+ +
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 46799999 78888877778899999986 11 22333332 2245778888654332 5
Q ss_pred EEEcCCCcEEEEECCCccc---ccceeeeCCCCCCCCCCCceeEEEC--CCCcEEEEE--eCCeEEEEeCCCCceee---
Q 001176 937 VSSGADAQLCMWSIDKWEK---LKSRFIQAPAGRQSPLVGETKVQFH--NDQTHLLVV--HESQISVYDSKLECSRS--- 1006 (1132)
Q Consensus 937 ~s~~~D~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~~~--~d~~v~vwd~~~~~~~~--- 1006 (1132)
+.+++||+|.-|...-... .....+. .+... ..-..+++. ..+.+|..+ ..++|.|||-+...+..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d--~s~~g--avYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~ 179 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVD--ASQQG--NVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGS 179 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEc--cCCCc--ceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCC
Confidence 6788999999998643322 0111111 11111 112334444 446677775 58999999984443321
Q ss_pred cC----CCCCCCCCeEEE---------EEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEE
Q 001176 1007 WS----PKDALPAPISSA---------IYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVI 1073 (1132)
Q Consensus 1007 ~~----~~~~h~~~i~~i---------~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1073 (1132)
+. +...-...|..+ .-.+++..=+.|..-|.|-+||.. |.+++++... +.-..+..+
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~---------g~LNaPWG~ 249 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS---------GRLNAPWGL 249 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC---------CcccCCcee
Confidence 00 000001112111 111222222334445789999998 7888887532 333444555
Q ss_pred EeCCC-----CCCeEEEEeCCCcEEEEecCCCc
Q 001176 1074 APHPS-----EPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1074 ~~~p~-----~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
+..|. .+.+|+---.||+|..+|..+++
T Consensus 250 a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 250 AIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred eeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 55442 46788887789999999999888
No 420
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.35 E-value=0.058 Score=38.91 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=29.0
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEec
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN 435 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~ 435 (1132)
....|.+++|+|..++||.|+.+|.|.++.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34579999999999999999999999999984
No 421
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.34 E-value=1.4 Score=45.46 Aligned_cols=174 Identities=9% Similarity=0.093 Sum_probs=110.3
Q ss_pred eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEE
Q 001176 917 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQIS 995 (1132)
Q Consensus 917 l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~ 995 (1132)
+.+-...+.++.|+|+.+.|++......-.+|=...|+.+...++.... ....+.+.-+|+++++- .++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence 3444555999999999999999988888888877777766655555433 34578888899888884 678888
Q ss_pred EEeCCCC-ceeec------CCCCCC-CCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCc-cccccccCCC
Q 001176 996 VYDSKLE-CSRSW------SPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA-YIPTYAVSSN 1066 (1132)
Q Consensus 996 vwd~~~~-~~~~~------~~~~~h-~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~ 1066 (1132)
++.++.. ..... .....+ ....-.++|+|....|..+-+-.=+.||.+..+.. .+..+. ..|.....--
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~--~l~~~~~~~~~~~~~~f 231 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPS--SLSVHASLDPTADRDLF 231 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCc--ccccccccCcccccceE
Confidence 8776221 11111 111112 45677899999999999998888888877763321 111000 0000000000
Q ss_pred CCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1067 TAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1067 ~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
-..+..+.|.+..+.+|+-+..++.+..-|..-
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 123456778877777888777777777766643
No 422
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.30 E-value=4.4 Score=49.68 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=95.2
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeE-------------EEEeeccCCccEEEEEec----------CCeEEE
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY-------------SVCPHHKESIQFIFSTAI----------DGKIKA 522 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~-------------~i~~~~~~~~~~l~s~s~----------dg~i~~ 522 (1132)
.|+.++.|+.|.-.|.++|+....+.. .+.|. .+.-.|--.+..++.|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 577888899999999999999877632 22211 011011101245666643 688999
Q ss_pred EEcCCCCceEEecCC---------CCe--------E-EEEEEcCCCCEEEEEec--------------CCCCCCeEEEEe
Q 001176 523 WLYDYLGSRVDYDAP---------GNW--------C-TMMAYSADGTRLFSCGT--------------SKEGESHLVEWN 570 (1132)
Q Consensus 523 wd~~~~~~~~~~~~~---------~~~--------v-~~~~~s~~~~~l~~~~~--------------~~~~~~~i~~wd 570 (1132)
+|.++++.+..+... .+. + ..+++.++...++.... +..-.+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999999887765421 011 1 23445555445444221 011235678889
Q ss_pred CCCCceeeeecc-ccCC-------ceEEEEEeC-CCC---EEEEEEcCCeEEEEECCCCeeEEEEe
Q 001176 571 ESEGAIKRTYSG-FRKR-------SLGVVQFDT-TRN---RFLAAGDEFQIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 571 ~~~~~~~~~~~~-~~~~-------~v~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1132)
.++|+....++. |++- ...-+.+.. +|+ .++.++.+|.+++.|.++|+.+...+
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 999998887765 3210 111122332 452 67778899999999999998887654
No 423
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.23 E-value=1.2 Score=43.82 Aligned_cols=90 Identities=11% Similarity=0.111 Sum_probs=64.7
Q ss_pred eEEEEeeCCCEEEEee--CCeEEEEE--CCCCeE-----EEEeeC----CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEE
Q 001176 841 ACIALSKNDSYVMSAS--GGKVSLFN--MMTFKV-----MTMFMS----PPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 907 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s--dg~i~vwd--~~~~~~-----~~~~~~----~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd 907 (1132)
..++|+.|.+.+...+ +-+|.-|| ..+|.. +..++. .....-.+++.. +|.+.++.-..|+|...|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence 4678888888777665 66787788 455432 233332 111233455666 778888788888999999
Q ss_pred cccceeeeeeccccCCeeEEEEcC
Q 001176 908 VRVDEVKTKLKGHQNRITGLAFSP 931 (1132)
Q Consensus 908 ~~~~~~~~~l~~h~~~V~~l~~sp 931 (1132)
..+|+.+.++.-....|++++|--
T Consensus 240 p~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecC
Confidence 999999999988899999999953
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.92 E-value=0.82 Score=53.57 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=77.5
Q ss_pred CEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEc-----
Q 001176 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY----- 525 (1132)
Q Consensus 452 ~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~----- 525 (1132)
...-+.-+.-++ ..+.-+....+.|||...+...+.-. ...+.|.++.|...++++.+++.+..+.|.+|--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 444444555455 33334445689999999887654332 4578999999999999999999999999999843
Q ss_pred CCCC----ceE--EecCC-CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeC
Q 001176 526 DYLG----SRV--DYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 526 ~~~~----~~~--~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
.... .+. .+..+ .++|.+..|.++|..++.+| +.+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECC
Confidence 1111 111 22333 36889999999998887764 35888874
No 425
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.61 E-value=7.7 Score=41.59 Aligned_cols=152 Identities=17% Similarity=0.183 Sum_probs=81.0
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCe-EEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEc-ccceee
Q 001176 837 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV-RVDEVK 914 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~-i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~-~~~~~~ 914 (1132)
...+..+..++||+++++++.|. ..-||-....-...-......|..+.|.| ++.+.+. ...|.|+.=+. ...+.-
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~-~~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWML-ARGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEE-ETTTEEEEEE-TTEEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEE-eCCcEEEEccCCCCcccc
Confidence 55688889999999999999665 45677542111112222457899999999 7666554 48888888762 222211
Q ss_pred e----eeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEe
Q 001176 915 T----KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 990 (1132)
Q Consensus 915 ~----~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 990 (1132)
. .+..-.-.+..++|.+++...|+++. |.+ +...+.++.=. ........ ......+.|.++.+-++.+.
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~--~~~~~~~~---~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQ--KDRVGENV---PSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-E--E-GGGTTS---SS---EEEEEETTEEEEE-S
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccce--ECccccCC---CCceEEEEEcCCCceEEECC
Confidence 1 12223334789999998887776654 433 34445444111 11111111 14578899988888899999
Q ss_pred CCeEEEE
Q 001176 991 ESQISVY 997 (1132)
Q Consensus 991 d~~v~vw 997 (1132)
+|.+.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 9988665
No 426
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.41 E-value=1.9 Score=42.67 Aligned_cols=176 Identities=14% Similarity=0.142 Sum_probs=92.3
Q ss_pred CeEEEEeCCCcEEEEEcc--cceeeeeeccccCCeeEEEEcCCCCEEEEEcCC------CcEEEE-ECCCcccccceeee
Q 001176 892 NIIAIGMEDSSVQIYNVR--VDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD------AQLCMW-SIDKWEKLKSRFIQ 962 (1132)
Q Consensus 892 ~~lasg~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D------~~i~iw-d~~~~~~~~~~~~~ 962 (1132)
+.|..+...+.|.+|++. ..+.+.++..- +.|..+.++..|++|+|--.+ ..+|+| ++............
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555677789999998 34566667644 789999999999999986432 255665 33321111111111
Q ss_pred CCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001176 963 APAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042 (1132)
Q Consensus 963 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd 1042 (1132)
...||.. +. .+.+. ....+.+-. +. ...+..+++-.|-..-|+.|+ ++.+.+|.
T Consensus 108 RiaG~~v-----~~-~~~~~-------~~~qleiiE--------lP----l~~~p~ciaCC~~tG~LlVg~-~~~l~lf~ 161 (215)
T PF14761_consen 108 RIAGHRV-----TP-SFNES-------SKDQLEIIE--------LP----LSEPPLCIACCPVTGNLLVGC-GNKLVLFT 161 (215)
T ss_pred EEccccc-----cc-CCCCc-------cccceEEEE--------ec----CCCCCCEEEecCCCCCEEEEc-CCEEEEEE
Confidence 1112110 00 00000 000111111 11 155677888777544455565 67899998
Q ss_pred CCCcce-ecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1043 AETLRF-RCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1043 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
+..... ...+....+......+..+..+..+++- ++++|..+ |-.+++..+.
T Consensus 162 l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic---~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 162 LKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC---EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred EEEEEEecccccEEechhhhhheecCceEEEEEEE---eeEEEEec-CCEEEEEEEe
Confidence 875544 2222211222222233445557777773 56777665 6666666653
No 427
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.28 E-value=1 Score=52.88 Aligned_cols=124 Identities=13% Similarity=0.180 Sum_probs=77.5
Q ss_pred EEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeec-cccCCeeEEEE--cCCCCEEEEEcCCCcEEEE
Q 001176 872 TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRITGLAF--SPTLNALVSSGADAQLCMW 948 (1132)
Q Consensus 872 ~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~--spdg~~l~s~~~D~~i~iw 948 (1132)
.++......++-+.-|. -++..++-+....+.|||...+.+...-. ...+.|.++.| .|||+.+++.|-...|.++
T Consensus 23 ~~~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~ 101 (631)
T PF12234_consen 23 STFETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLY 101 (631)
T ss_pred EEEecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEE
Confidence 33444444555565555 45555554455589999998876443322 35778999998 4789999999999999998
Q ss_pred ECCC----cccccceeeeCC--CCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC
Q 001176 949 SIDK----WEKLKSRFIQAP--AGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 999 (1132)
Q Consensus 949 d~~~----~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~ 999 (1132)
.-.- ........+... ..+.+ .++.+..|.++|.+ +++.++.+.|+|-
T Consensus 102 ~Q~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~L-vV~sGNqlfv~dk 155 (631)
T PF12234_consen 102 TQLRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTL-VVGSGNQLFVFDK 155 (631)
T ss_pred EccchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeE-EEEeCCEEEEECC
Confidence 5421 111111111111 11221 46788999999965 4556778888886
No 428
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.23 E-value=5.9 Score=40.41 Aligned_cols=208 Identities=13% Similarity=0.075 Sum_probs=125.3
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccccccee
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 960 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 960 (1132)
-..++-+| +|..-.++...|.|--.|-.+|+....--+....-..|...|||..-++-+.. .|.-.|-++.+.....
T Consensus 64 p~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~- 140 (353)
T COG4257 64 PFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP- 140 (353)
T ss_pred ccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee-
Confidence 45577778 78777788888888778888887665544555556678888998877765544 4666666665532221
Q ss_pred eeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001176 961 IQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1040 (1132)
Q Consensus 961 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~v 1040 (1132)
+. ..+ .........|.+.|++-+++..|.---.|.....++.+.... ...-..|+..|||.+-++.-.++.|..
T Consensus 141 lp--~~~--a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--G~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 141 LP--LEH--ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ--GGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred cc--ccc--CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC--CCCCcceEECCCCcEEEEeccccceEE
Confidence 11 111 125667889999999988865433222233333333333322 445567888999999888888888888
Q ss_pred EeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc-ccccCC
Q 001176 1041 FDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE-LKWGGT 1107 (1132)
Q Consensus 1041 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~-~~~~~~ 1107 (1132)
.|..++... .+..+ ..+ + .....+--+| -++.-+|....+.+..+|.++.. ..|.+|
T Consensus 215 idp~~~~ae-v~p~P----~~~---~-~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLP 272 (353)
T COG4257 215 IDPFAGHAE-VVPQP----NAL---K-AGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLP 272 (353)
T ss_pred cccccCCcc-eecCC----Ccc---c-ccccccccCc-cCcEEEeccCCceeeEeCcccccceeeeCC
Confidence 888777332 22111 110 0 1111222233 55677776677777777776654 334443
No 429
>PRK13684 Ycf48-like protein; Provisional
Probab=94.23 E-value=11 Score=41.69 Aligned_cols=157 Identities=11% Similarity=0.075 Sum_probs=88.3
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEE-EEcccceee-eeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccc
Q 001176 878 PPAATFLAFHPQDNNIIAIGMEDSSVQI-YNVRVDEVK-TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 955 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~~dg~v~i-wd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~ 955 (1132)
.+.+.++.+.| ++.+++++ ..|.+.. +| ..++.- ..-..-...++++.+.++++.++.+ ..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688999999 77666554 4565543 22 122211 1122334578999999998876654 567664323343331
Q ss_pred ccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecC
Q 001176 956 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1035 (1132)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d 1035 (1132)
=. ........ ....+..+++.+++..++++.+|.+..=.-.++.-........-......+.|..+++.+++| ..
T Consensus 248 W~--~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~ 322 (334)
T PRK13684 248 WS--KPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QR 322 (334)
T ss_pred cc--cccCCccc--cccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CC
Confidence 11 11111000 013467889999998888888887654322333333322111113467888888777776655 47
Q ss_pred CcEEEEeC
Q 001176 1036 GAIGVFDA 1043 (1132)
Q Consensus 1036 g~i~vwd~ 1043 (1132)
|.|--|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 88877764
No 430
>PHA03098 kelch-like protein; Provisional
Probab=94.19 E-value=2.2 Score=51.11 Aligned_cols=151 Identities=7% Similarity=-0.041 Sum_probs=72.3
Q ss_pred ccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC--CCeEEEEeCCCCceeeee
Q 001176 508 IQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG--ESHLVEWNESEGAIKRTY 580 (1132)
Q Consensus 508 ~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~~ 580 (1132)
+.+++.||.+ ..+..||..+..-...-..........+..-+++..+.||....+ -..+..||+.+.+....-
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 3677777765 346677776554322111111111111122356666666632211 256889998876543221
Q ss_pred ccccCCceEEEEEeCCCCEEEEEEcC--------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC--
Q 001176 581 SGFRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD-- 650 (1132)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-- 650 (1132)
.......-.++ ...++..++.||.+ ..+.+||..+.+....-..... .........++.+++.|+.+
T Consensus 423 ~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~ 499 (534)
T PHA03098 423 PLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGGDKYE 499 (534)
T ss_pred CCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEECCEEEEEcCCcCC
Confidence 11111011122 22345555666532 2388899887665433221111 11111122367777777654
Q ss_pred ---CcEEEEEcCCc
Q 001176 651 ---NGIKILANSDG 661 (1132)
Q Consensus 651 ---g~i~iw~~~~~ 661 (1132)
..+.+||..+.
T Consensus 500 ~~~~~v~~yd~~~~ 513 (534)
T PHA03098 500 YYINEIEVYDDKTN 513 (534)
T ss_pred cccceeEEEeCCCC
Confidence 46777877655
No 431
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.01 E-value=18 Score=44.18 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=55.2
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCeEEEEECCCC-eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeee
Q 001176 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 915 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 915 (1132)
...|..+.++|+|+++|..+...|.|..+... .....+.+-...|.|=.+.= +..++
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~--------------------- 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF--------------------- 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc---------------------
Confidence 56789999999999999998766777666421 11112222222222222211 11111
Q ss_pred eeccccCCeeEEEEcCC---CCEEEEEcCCCcEEEEECCCcc
Q 001176 916 KLKGHQNRITGLAFSPT---LNALVSSGADAQLCMWSIDKWE 954 (1132)
Q Consensus 916 ~l~~h~~~V~~l~~spd---g~~l~s~~~D~~i~iwd~~~~~ 954 (1132)
...+...|..+.|+|. +.+|+.-..|+++|+||+....
T Consensus 142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 1123345677788775 4677777888888888886543
No 432
>PHA03098 kelch-like protein; Provisional
Probab=93.87 E-value=2.9 Score=49.99 Aligned_cols=195 Identities=11% Similarity=0.002 Sum_probs=91.6
Q ss_pred CCCCeEEEEeCCC------eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC-----CcEEEEECCC
Q 001176 415 PDGLMLGVAFSKH------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVA 483 (1132)
Q Consensus 415 pdg~~las~~~dg------~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----g~v~vwd~~~ 483 (1132)
.++..++.||.++ .+..||..+++-. ....+.........+. -+++ +++.||.+ ..+..||..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~--~~~~--lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTV--FNNR--IYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEE--ECCE--EEEEeCCCCCEecceEEEEcCCC
Confidence 4667777776543 4677887765432 1111211111222222 3455 66677765 3577888877
Q ss_pred CeEEEE--ecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001176 484 GRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 484 ~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
++.... +....... +++. . ++.+.+.|+.+ +.+..||..+.+-...-..........+...+++..+.
T Consensus 368 ~~W~~~~~lp~~r~~~-~~~~--~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 368 SKWREEPPLIFPRYNP-CVVN--V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred CceeeCCCcCcCCccc-eEEE--E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEE
Confidence 654321 11111111 1111 1 33666777632 45788887765433211111111111122235556666
Q ss_pred EecCCCC----CCeEEEEeCCCCceeeeecccc-CCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeeE
Q 001176 556 CGTSKEG----ESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNML 620 (1132)
Q Consensus 556 ~~~~~~~----~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 620 (1132)
||.+... -..+.+||..+++....-.... ......+. .++..++.||.+ ..+.+||..+.+..
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 6542211 1348899988766433211111 10111222 256666666643 46788888776543
No 433
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.57 E-value=0.6 Score=56.36 Aligned_cols=146 Identities=14% Similarity=0.072 Sum_probs=97.1
Q ss_pred CCCeeEEEEeeCCCEEEEee--C-CeEEEEECCCCeEE-----EEeeCC------CCCeEEEEEeCCCCCeEEEEeCCCc
Q 001176 837 EESAACIALSKNDSYVMSAS--G-GKVSLFNMMTFKVM-----TMFMSP------PPAATFLAFHPQDNNIIAIGMEDSS 902 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s--d-g~i~vwd~~~~~~~-----~~~~~~------~~~i~~l~~sp~~~~~lasg~~dg~ 902 (1132)
...+..+...+|+...++.. + -.|..||+.+...- +-+..| ..-..++.|.|.-....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45667778888988776664 3 36999998764321 112222 2335678888844455677788999
Q ss_pred EEEEEcccce-eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECC
Q 001176 903 VQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 981 (1132)
Q Consensus 903 v~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 981 (1132)
|++..+.-.. ....+. .....+|++|+|.|+.++.|-..|++.-|...-..+....+..... ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-----~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-----NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-----CcceeEEEEec
Confidence 9988765322 222222 4556899999999999999999999998877654322222211112 25689999988
Q ss_pred CCcEEEE
Q 001176 982 DQTHLLV 988 (1132)
Q Consensus 982 dg~~l~~ 988 (1132)
...++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888887
No 434
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.55 E-value=24 Score=43.29 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=65.1
Q ss_pred EEEeeCCCEEEEeeCCeEEEEECCCCeEEEEee--CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEc--ccceeeeeec
Q 001176 843 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV--RVDEVKTKLK 918 (1132)
Q Consensus 843 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~--~~~~~~~~l~ 918 (1132)
.|+.|-..++.+|-...+++||+...++++... .-...|+.+.+ .+..+++|+..-.|..+-. ...+ +..+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~-l~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQ-LIVFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCe-EEEEe
Confidence 456677778888889999999998877665543 23456788887 4467777876666665443 3334 33332
Q ss_pred c--ccCCeeEEEEcCCCCEEEEEcCCCcEEEEECC
Q 001176 919 G--HQNRITGLAFSPTLNALVSSGADAQLCMWSID 951 (1132)
Q Consensus 919 ~--h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~ 951 (1132)
. -...|+++.+- |...+|.+..=|.+.+-.+.
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 2 12236666654 45566666665666555443
No 435
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.46 E-value=11 Score=39.36 Aligned_cols=212 Identities=15% Similarity=0.148 Sum_probs=123.4
Q ss_pred CEEEEEEecCCCcEEEEEEcCCCcEEEEECC------CC-eEEEEecC-----CCCCeEEEEeeccCC----------cc
Q 001176 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV------AG-RKQYTFEG-----HEAPVYSVCPHHKES----------IQ 509 (1132)
Q Consensus 452 ~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~------~~-~~~~~~~~-----h~~~v~~i~~~~~~~----------~~ 509 (1132)
.-+.|+|+|.+. +-++...-+...+||.. .. ..+.++.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 457899999887 67777778899999986 12 22334432 234567777653321 13
Q ss_pred EEEEEecCCeEEEEEcCCCCc-----eEEecCC-CC-eEEEEEEc--CCCCEEEEEecCCCCCCeEEEEeCCCCceee--
Q 001176 510 FIFSTAIDGKIKAWLYDYLGS-----RVDYDAP-GN-WCTMMAYS--ADGTRLFSCGTSKEGESHLVEWNESEGAIKR-- 578 (1132)
Q Consensus 510 ~l~s~s~dg~i~~wd~~~~~~-----~~~~~~~-~~-~v~~~~~s--~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-- 578 (1132)
.++.+++||+|.-|...-... ...+... .+ -...+++. ..+.+|..+-. ..++|.++|-.-.+...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 468889999999997532222 1222211 22 33445544 34677777643 47789999855332210
Q ss_pred eecccc--C--CceEE--------EEE---eCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC----
Q 001176 579 TYSGFR--K--RSLGV--------VQF---DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---- 639 (1132)
Q Consensus 579 ~~~~~~--~--~~v~~--------~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---- 639 (1132)
.|.... . .+... +.+ .++...=+.|-.-|.|-+||.. ++.++.+...+....-+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhC
Confidence 111000 0 01111 111 1122222223345789999974 67787776655556667888765
Q ss_pred --CCCEEEEEeCCCcEEEEEcCCcceeeeeccc
Q 001176 640 --EGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670 (1132)
Q Consensus 640 --~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (1132)
.|.+|+---.||+|..||..++ +.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG-AQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC-ceeeeecC
Confidence 4667776667999999999988 54455544
No 436
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.39 E-value=4.9 Score=46.92 Aligned_cols=147 Identities=13% Similarity=0.215 Sum_probs=86.9
Q ss_pred CCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEE
Q 001176 900 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 979 (1132)
Q Consensus 900 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 979 (1132)
--.|+||++ +|+++.++.-..+++..+.|+.+ ..|+....||++++|++-....... ..|.......|..+.|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~-----svg~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESN-----SVGFESQMSDIVECRF 135 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhccc-----ccccccccCceeEEEE
Confidence 346889986 56767766555557889999865 4567788999999999876432111 0111111123444555
Q ss_pred CCCCcEEEEEeCCeEEEEeCCC----------------CceeecCCC-------------------------CCC-----
Q 001176 980 HNDQTHLLVVHESQISVYDSKL----------------ECSRSWSPK-------------------------DAL----- 1013 (1132)
Q Consensus 980 s~dg~~l~~~~d~~v~vwd~~~----------------~~~~~~~~~-------------------------~~h----- 1013 (1132)
..+|-.+.+.++..+.+-+... .+...+.++ ..|
T Consensus 136 f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 136 FHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP 215 (829)
T ss_pred ecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC
Confidence 4455433332222222221100 000000000 001
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccC
Q 001176 1014 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1053 (1132)
Q Consensus 1014 ~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~ 1053 (1132)
...+..|..||+.++||.=..+|.|.+-+++..+.++.+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 2456778899999999999999999999999888887776
No 437
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.05 E-value=19 Score=40.63 Aligned_cols=154 Identities=11% Similarity=0.052 Sum_probs=86.8
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEEccccee--eeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccc
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 958 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~ 958 (1132)
...+..++ ++.+++++..-..++-||- |+. ...-......++++.|.+++..++.+ .+|.+ +|....++.-..
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 34455667 6777766544332333432 221 11112234568899999999877755 55654 444444321000
Q ss_pred eeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 001176 959 RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAI 1038 (1132)
Q Consensus 959 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i 1038 (1132)
......... .....+..+.|.+++..++++..|.+....-.++.-........-......+.|.++++.+++|. +|.|
T Consensus 316 ~~f~~~~~~-~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~i 393 (398)
T PLN00033 316 FDFEEADIK-SRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVL 393 (398)
T ss_pred cceeecccC-CCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEE
Confidence 001111100 01135788999999999999999988777655554333322222256788999988877777664 7776
Q ss_pred EEE
Q 001176 1039 GVF 1041 (1132)
Q Consensus 1039 ~vw 1041 (1132)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 654
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.59 E-value=15 Score=43.22 Aligned_cols=179 Identities=9% Similarity=0.047 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE-ECCCCe
Q 001176 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW-DVVAGR 485 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw-d~~~~~ 485 (1132)
.+..+.||.+..+|+. ..+|++++|++.....-............|..+.|..+|= .+.+. +|.+.+- +....
T Consensus 85 ~lI~mgWs~~eeLI~v-~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~~- 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICV-QKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEEP- 158 (829)
T ss_pred CeeeecccCCceEEEE-eccceEEEeecchhhhcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCcc-
Confidence 7889999987766554 6999999999875321110001122233455556655553 33333 4444443 32221
Q ss_pred EEEEecCC-CCCeEEEEeeccCC---ccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 486 KQYTFEGH-EAPVYSVCPHHKES---IQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 486 ~~~~~~~h-~~~v~~i~~~~~~~---~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
.++++..- .......+|.-..+ ...++-....-...++...... ....+......+..++.||+.++|+.-..
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~-- 236 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE-- 236 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEec--
Confidence 22222210 00011112211111 1111111100000111111111 11122223467888999999999987754
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
.|.|.+-+....+....+..........++|..
T Consensus 237 --~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 237 --TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred --CCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 677888888877776666643322222344443
No 439
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.19 E-value=3.7 Score=46.13 Aligned_cols=149 Identities=10% Similarity=0.022 Sum_probs=80.2
Q ss_pred CCeEEEEEeCCCCCeEEEEe-----------CCC-cEEEEEccc--ce--eeeeeccccCCeeEEEEcCCCCEEEEEcCC
Q 001176 879 PAATFLAFHPQDNNIIAIGM-----------EDS-SVQIYNVRV--DE--VKTKLKGHQNRITGLAFSPTLNALVSSGAD 942 (1132)
Q Consensus 879 ~~i~~l~~sp~~~~~lasg~-----------~dg-~v~iwd~~~--~~--~~~~l~~h~~~V~~l~~spdg~~l~s~~~D 942 (1132)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.++| .+++ ...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC
Confidence 4567889988 788776542 223 677776443 32 223333333456889999998 5554 444
Q ss_pred CcEEEEECCCcccc---cceeeeCCCCC-CCCCCCceeEEECCCCcEEEE-EeC-------------------CeEEEEe
Q 001176 943 AQLCMWSIDKWEKL---KSRFIQAPAGR-QSPLVGETKVQFHNDQTHLLV-VHE-------------------SQISVYD 998 (1132)
Q Consensus 943 ~~i~iwd~~~~~~~---~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~-~~d-------------------~~v~vwd 998 (1132)
...++.+....... ....+...... .........++|.|||.+.++ +.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33333344332111 11222322221 001134678999999987776 421 3345555
Q ss_pred CCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001176 999 SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1033 (1132)
Q Consensus 999 ~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~ 1033 (1132)
..+.....+.. + ......++|+++|+++++-.
T Consensus 171 pdg~~~e~~a~--G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKLRVVAH--G-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeEEEEec--C-cCCCccceECCCCCEEEEcc
Confidence 54444443322 2 23456799999999877644
No 440
>PHA02790 Kelch-like protein; Provisional
Probab=91.85 E-value=8.9 Score=44.90 Aligned_cols=184 Identities=12% Similarity=-0.014 Sum_probs=87.8
Q ss_pred eCCCEEEEee-C-----CeEEEEECCCCeEEE--EeeCCCCCeEEEEEeCCCCCeEEEEeCC--CcEEEEEcccce--ee
Q 001176 847 KNDSYVMSAS-G-----GKVSLFNMMTFKVMT--MFMSPPPAATFLAFHPQDNNIIAIGMED--SSVQIYNVRVDE--VK 914 (1132)
Q Consensus 847 ~dg~~la~~s-d-----g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~--~~ 914 (1132)
.++..+++|+ + .++..||..+.+-.. .+.........++ - ++.+.+.|+.+ ..+..||..+++ .+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455556665 3 247788887654322 2221111122222 3 67888888864 357888876543 22
Q ss_pred eeeccccCCeeEEEEcCCCCEEEEEcCCC---cEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeC
Q 001176 915 TKLKGHQNRITGLAFSPTLNALVSSGADA---QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 991 (1132)
Q Consensus 915 ~~l~~h~~~V~~l~~spdg~~l~s~~~D~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 991 (1132)
..+....... .+..-+|+..+.||.++ .+..||..+..= ....... .. .... + +..-+|+..++|
T Consensus 347 ~~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W---~~~~~m~-~~--r~~~-~-~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQW---QFGPSTY-YP--HYKS-C-ALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEE---EeCCCCC-Cc--cccc-e-EEEECCEEEEEC--
Confidence 2232111111 12233778888888653 467788765431 1111111 00 0111 1 223355555554
Q ss_pred CeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCcc
Q 001176 992 SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLR 1047 (1132)
Q Consensus 992 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d-----g~i~vwd~~~~~ 1047 (1132)
|.+.+||...+.-...............+ .-+|+..++|+.+ .+|..||..+++
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 45778888444333322211101112122 2477777777754 245666666543
No 441
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.85 E-value=0.044 Score=59.45 Aligned_cols=244 Identities=14% Similarity=0.172 Sum_probs=135.3
Q ss_pred EEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEE
Q 001176 773 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 852 (1132)
Q Consensus 773 ~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~l 852 (1132)
....+.+.+..++.++.+..+..||-. |+.+.. .. . .+....+++..+|..+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-----------------------gq~~le-~n---~-tg~aldm~wDkegdvl 89 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-----------------------GQVILE-LN---P-TGKALDMAWDKEGDVL 89 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-----------------------cceecc-cC---C-chhHhhhhhccccchh
Confidence 345566777778888888887777632 111111 11 1 4566778888888877
Q ss_pred EEee--CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEc
Q 001176 853 MSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 930 (1132)
Q Consensus 853 a~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 930 (1132)
++.. .+.+.+||+.+......-.+-...-.-+.|++ +...++.|...|.+.|++..+.+.+.+.-.|..++++++|.
T Consensus 90 avlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 7665 68899999976432111111111222378999 88999999999999999988777666665699999999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEE--EeC---CCCcee
Q 001176 931 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV--YDS---KLECSR 1005 (1132)
Q Consensus 931 pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~v--wd~---~~~~~~ 1005 (1132)
+.+. .+.++.|..+.+-.-.+... ...........- ...-...=.|..-|..+...-.+...+ -.. +...-.
T Consensus 169 lEd~-vil~dcd~~L~v~~qegeta-~ltevggepdnm-~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval 245 (615)
T KOG2247|consen 169 LEDY-VILCDCDNTLSVTTQEGETA-SLTEVGGEPDNM-DFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL 245 (615)
T ss_pred ccce-eeecCcHHHHHHhhhcccee-eeeeccCccchh-hhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce
Confidence 8764 55566565443322222110 000000000000 000000012223333333322221111 111 111111
Q ss_pred ecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeccc
Q 001176 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1052 (1132)
Q Consensus 1006 ~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~ 1052 (1132)
.+... .+.+.+..|--||.. .-+...|.|..-.+.+++....|
T Consensus 246 ~fq~~---~gni~cyrwylDg~i-~igf~ag~iV~iS~h~aeLgaef 288 (615)
T KOG2247|consen 246 QFQEK---YGNIHCYRWYLDGYI-LIGFDAGYIVSISAHNAELGAEF 288 (615)
T ss_pred Eeeec---CCceeEEEEeccccc-cccccceeEEEEeccchHHHHHH
Confidence 22222 567888888888764 44666777777778877765443
No 442
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.74 E-value=2 Score=47.52 Aligned_cols=93 Identities=20% Similarity=0.118 Sum_probs=55.5
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEe---------CCCccee--cccCCCccccccccCCCCCCcEEEEeCCCC--CC
Q 001176 1015 APISSAIYSCDGLLVYAGFCDGAIGVFD---------AETLRFR--CRIGPSAYIPTYAVSSNTAHPLVIAPHPSE--PN 1081 (1132)
Q Consensus 1015 ~~i~~i~~s~dg~~las~~~dg~i~vwd---------~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~ 1081 (1132)
..|..+..++.|..++..+.+|.+.++= +++|+.. |+...-. .. .........+..++|+|+. ..
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~-~~-~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA-ER-FFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc-ce-eeccCCceeeeeccccCCccCCc
Confidence 3455666666666666666666544421 2233221 1111000 00 0111234677889999964 56
Q ss_pred eEEEEeCCCcEEEEecCCCcccccCCCC
Q 001176 1082 QIALGMSDGAVHVVEPSDAELKWGGTPS 1109 (1132)
Q Consensus 1082 ~l~s~~~Dg~i~vW~~~~~~~~~~~~~~ 1109 (1132)
.|+.-+.|..||+|+++.....|..|++
T Consensus 182 hL~iL~sdnviRiy~lS~~telylqpge 209 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTELYLQPGE 209 (741)
T ss_pred eEEEEecCcEEEEEecCCcchhhccCCC
Confidence 7888889999999999999888877654
No 443
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.71 E-value=1.7 Score=52.80 Aligned_cols=145 Identities=12% Similarity=0.043 Sum_probs=90.5
Q ss_pred CEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE-----EEecC------CCCCeEEEEeeccCCccEEEEEecCCeE
Q 001176 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-----YTFEG------HEAPVYSVCPHHKESIQFIFSTAIDGKI 520 (1132)
Q Consensus 452 ~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~-----~~~~~------h~~~v~~i~~~~~~~~~~l~s~s~dg~i 520 (1132)
+|..+...+|+....++..+.+-.|..+|+++-..- .-|.. ......++.|+|... ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 566666777877545555566668999998753211 11111 223345566777644 456677889999
Q ss_pred EEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc---cCCceEEEEEeCCC
Q 001176 521 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF---RKRSLGVVQFDTTR 597 (1132)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~---~~~~v~~~~~~~~~ 597 (1132)
++..+........-..-....++++|+|.|+.++.+- ..|++.-|... ++....+.+. ....|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~----nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGR----NNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEec----CCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 8886654333322223345789999999999999984 47778777654 3333333322 22368889998776
Q ss_pred CEEEE
Q 001176 598 NRFLA 602 (1132)
Q Consensus 598 ~~l~~ 602 (1132)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 66665
No 444
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.58 E-value=27 Score=39.19 Aligned_cols=209 Identities=12% Similarity=0.087 Sum_probs=103.5
Q ss_pred CeEEEEEeCCCCCeEEEEeCCCcEEEEE---------cccceee--eee---------ccccCCeeEEEEcCCC---CEE
Q 001176 880 AATFLAFHPQDNNIIAIGMEDSSVQIYN---------VRVDEVK--TKL---------KGHQNRITGLAFSPTL---NAL 936 (1132)
Q Consensus 880 ~i~~l~~sp~~~~~lasg~~dg~v~iwd---------~~~~~~~--~~l---------~~h~~~V~~l~~spdg---~~l 936 (1132)
.|..+..++ .|..+|-.+.+|.+.++= +++|+.. .+. ....-.+..++|+|+. ..|
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 466778888 888999888998655432 1223211 111 0111235678899975 678
Q ss_pred EEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE--eCCeEEEEeCCCCceeecCCCCCCC
Q 001176 937 VSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLECSRSWSPKDALP 1014 (1132)
Q Consensus 937 ~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~~~~~~~~~~~h~ 1014 (1132)
..-+.|.+|++||+.....+- ......++.. ..+.-+.|.....++... .-+.|.=|..-++....+ .
T Consensus 184 ~iL~sdnviRiy~lS~~tely--lqpgepgRS~--tn~Si~sFGe~~~~~l~~~~a~~~V~~~Esv~Nd~~~l------~ 253 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELY--LQPGEPGRSP--TNVSILSFGEEESLVLNKGRAYTAVLGEEAVANDFGPL------A 253 (741)
T ss_pred EEEecCcEEEEEecCCcchhh--ccCCCcCCCC--ccceeeccCCcceeeeccCcccccccCchhhccCcccc------c
Confidence 888899999999998765431 2222333332 222333444333333331 223344443311111100 0
Q ss_pred CCeEEEEE---ccCCC----EEEEEecCC---cEEEEeCCCcceecccCCCccccccccCCCCC---CcEEEEeCCCCCC
Q 001176 1015 APISSAIY---SCDGL----LVYAGFCDG---AIGVFDAETLRFRCRIGPSAYIPTYAVSSNTA---HPLVIAPHPSEPN 1081 (1132)
Q Consensus 1015 ~~i~~i~~---s~dg~----~las~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~ 1081 (1132)
..-.++.- ++... -+..-.+.| .|+|--......+..++.+-++... .|.. .--++...|.-+.
T Consensus 254 ~S~ktL~~~nSs~k~E~iE~p~~~L~EnG~~~NIyi~~~~~~~~~~~LQGPl~~~p~---aeDnyg~~~CaL~~lpS~p~ 330 (741)
T KOG4460|consen 254 ASPKTLFGQNSSGKDEVVEYPLYILYENGETFNIYISLLHSPGNIGKLQGPLPMHPA---AEDNYGYDACALLCLPSVPN 330 (741)
T ss_pred cCccceeeecccccceeEecceeeeeccCcceeEEEEEccCcchhhhhcCCccCCcc---cccccchhhheeEeecCCCC
Confidence 00111111 11111 122233445 5666655554555555544333221 2211 1112333455678
Q ss_pred eEEEEeCCCcEEEEecCCCcc
Q 001176 1082 QIALGMSDGAVHVVEPSDAEL 1102 (1132)
Q Consensus 1082 ~l~s~~~Dg~i~vW~~~~~~~ 1102 (1132)
+|+++...|.+..=-+-.++.
T Consensus 331 ilViA~S~G~L~h~~L~e~e~ 351 (741)
T KOG4460|consen 331 ILVIATSSGMLYHCVLLEGEE 351 (741)
T ss_pred eEEEEecCCceeeeeeecccc
Confidence 999999999988766666663
No 445
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.53 E-value=2.4 Score=46.10 Aligned_cols=123 Identities=11% Similarity=0.155 Sum_probs=81.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
.+++|.++.||+|.+ ++|+--.|.+|.+.+....+....... ..+..+..|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ---------------ECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH---------------HhccCcceeEEEEEecC-eeEE
Confidence 567999999999998 899999999999999854433221000 01223456889999866 6677
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 484 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~ 484 (1132)
.....| +.+|.+..... .....+.|.-.|.-..|.++.+-.+++|+-..+++.=+-+.++
T Consensus 128 ~i~~~G-~e~y~v~pekr--slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEKR--SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEecCC-eEEEEEchhhh--hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 776666 77887765432 1223556888999999999988433444434444444444433
No 446
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.34 E-value=0.18 Score=58.82 Aligned_cols=179 Identities=12% Similarity=0.200 Sum_probs=102.0
Q ss_pred CeEEEEECC--CCeEEEEee-----CCCCCeEEEEEeCC--CCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEE
Q 001176 858 GKVSLFNMM--TFKVMTMFM-----SPPPAATFLAFHPQ--DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA 928 (1132)
Q Consensus 858 g~i~vwd~~--~~~~~~~~~-----~~~~~i~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 928 (1132)
|.+.|||++ .|+....+. .....+.-+.|.|- +.-++..+..++.+++....+... ..+.+|...++.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 677888875 343322221 12223344444431 456777888889998877655432 44566877665544
Q ss_pred -----------EcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC-------Cc--EEEE
Q 001176 929 -----------FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-------QT--HLLV 988 (1132)
Q Consensus 929 -----------~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-------g~--~l~~ 988 (1132)
.||||+.+|+++.||.+++|.+.-..+....++..-..|.. .+-.|.-+... +. ++++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence 48999999999999999999886544444445544444432 11122223322 22 2333
Q ss_pred Ee--CCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCC------------EEEEEecCCcEEEEeCCC
Q 001176 989 VH--ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL------------LVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 989 ~~--d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~------------~las~~~dg~i~vwd~~~ 1045 (1132)
+. +..+++|.. ..+|+..+. ...|..+. -+||+ .++.-+-|++|.+|.-..
T Consensus 310 ttd~nre~k~w~~a~w~Cll~~~-----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCLLDKL-----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred cccCCcceeEeeccchhhhhhhc-----ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 33 456888887 566653222 23444444 34443 233456688888886543
No 447
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.01 E-value=5.8 Score=44.60 Aligned_cols=138 Identities=12% Similarity=0.127 Sum_probs=78.9
Q ss_pred CeeEEEEeeCCCEEEEee------------CC-eEEEEECCC--Ce--EEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCC
Q 001176 839 SAACIALSKNDSYVMSAS------------GG-KVSLFNMMT--FK--VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 901 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s------------dg-~i~vwd~~~--~~--~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg 901 (1132)
....++|.++|+++++-. .+ .|.+++-.+ ++ ....+.........+++.+ ++ +++ +....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCCe
Confidence 457899999999887742 23 677776432 32 2234443444568899998 77 444 44443
Q ss_pred cEEEEEccc-----ce---eeeeecc----ccCCeeEEEEcCCCCEEEEEcCC-------------------CcEEEEEC
Q 001176 902 SVQIYNVRV-----DE---VKTKLKG----HQNRITGLAFSPTLNALVSSGAD-------------------AQLCMWSI 950 (1132)
Q Consensus 902 ~v~iwd~~~-----~~---~~~~l~~----h~~~V~~l~~spdg~~l~s~~~D-------------------~~i~iwd~ 950 (1132)
..++.|... ++ .+..+.. +......++|.|||.+.++.+.. +.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 333434421 11 1122322 23447789999999987766631 33455555
Q ss_pred CCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE
Q 001176 951 DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
++++.. .+ ..+. .....++|+++|+++++
T Consensus 172 dg~~~e---~~--a~G~----rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 172 DGGKLR---VV--AHGF----QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred CCCeEE---EE--ecCc----CCCccceECCCCCEEEE
Confidence 543310 11 1221 34578999999998877
No 448
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.96 E-value=2.9 Score=50.68 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=57.0
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEeCCC----------cce--ecc-cCCCccccccccCCCCCCcEEEEeCCCC-
Q 001176 1014 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAET----------LRF--RCR-IGPSAYIPTYAVSSNTAHPLVIAPHPSE- 1079 (1132)
Q Consensus 1014 ~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~----------~~~--~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~- 1079 (1132)
...|..+.++|+|++||..+..| |.|-.+.. |+. .|+ +.... ......++..+..+.|+|..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~---~~~~~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDE---RFFTSNSSLEIKQVRWHPWSE 159 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEech---hhccCCCCceEEEEEEcCCCC
Confidence 45789999999999999988765 44433321 111 111 11111 11123567899999999952
Q ss_pred -CCeEEEEeCCCcEEEEecCCCc
Q 001176 1080 -PNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1080 -~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
+..|+.=+.|+++|+||+....
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCCC
Confidence 5788899999999999998755
No 449
>PHA02790 Kelch-like protein; Provisional
Probab=90.80 E-value=12 Score=43.99 Aligned_cols=185 Identities=9% Similarity=-0.021 Sum_probs=86.8
Q ss_pred EEEEEcCCC-----cEEEEECCCCeEEE--EecCCCCCeEEEEeeccCCccEEEEEecC--CeEEEEEcCCCCceEEecC
Q 001176 466 CIVTCGDDK-----MIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDYLGSRVDYDA 536 (1132)
Q Consensus 466 ~l~s~~~dg-----~v~vwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~d--g~i~~wd~~~~~~~~~~~~ 536 (1132)
+++.||.++ .+..||..+++... .+.........+.. ++.+.+.|+.+ ..+..||..+..-...-..
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~----~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA----NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE----CCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 455565432 46677877765432 11111111112221 33667777754 3577787654432221111
Q ss_pred CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 001176 537 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 537 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1132)
........+..-+|+..+.||.+. ....+..||..+.+....-.-... .....+..-++...+.| |.+.+||..+
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~-~~~~ve~ydp~~~~W~~~~~m~~~-r~~~~~~~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSE-TDTTTEYLLPNHDQWQFGPSTYYP-HYKSCALVFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCC-CCccEEEEeCCCCEEEeCCCCCCc-cccceEEEECCEEEEEC---CceEEecCCC
Confidence 111111122234666666666532 235678899877654332111111 11111222344444445 3467889887
Q ss_pred CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC-----CcEEEEEcCCc
Q 001176 617 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 661 (1132)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~ 661 (1132)
.+....-..... ....-+..-++++.++|+.+ ..+..||..++
T Consensus 425 ~~W~~~~~m~~~--r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 425 NTWTLIDDPIYP--RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CcEeEcCCCCCC--ccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 665543322211 11112222367777777754 35677776655
No 450
>PRK13684 Ycf48-like protein; Provisional
Probab=90.80 E-value=30 Score=38.23 Aligned_cols=152 Identities=7% Similarity=-0.067 Sum_probs=81.3
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeC
Q 001176 494 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
...+.++.+.++ +. ++..+..|.+..= .+.+.. ..........++++.+.++++.++++. .+.+++=..
T Consensus 172 ~g~~~~i~~~~~--g~-~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPD--GK-YVAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCC--Ce-EEEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccC
Confidence 456777877653 34 4455555654421 122222 122233445788999999998877653 344433223
Q ss_pred CCCceeeeeccc---cCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC-CCCCcceEEEcCCCCEEEEE
Q 001176 572 SEGAIKRTYSGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-GLPASPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 572 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~ 647 (1132)
..|..-...... ....+..+.+.+++.. +.++.+|.+. .....++.-....... -....+.+.|..+++.++ .
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence 333322211111 1124677888887764 4555677665 3455555544443211 112466777776666554 5
Q ss_pred eCCCcEEEEE
Q 001176 648 TSDNGIKILA 657 (1132)
Q Consensus 648 ~~dg~i~iw~ 657 (1132)
+..|.|..|+
T Consensus 320 G~~G~il~~~ 329 (334)
T PRK13684 320 GQRGVLLRYV 329 (334)
T ss_pred CCCceEEEec
Confidence 6678887765
No 451
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.77 E-value=30 Score=38.23 Aligned_cols=188 Identities=12% Similarity=0.150 Sum_probs=104.5
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeec--cCCccE--EEEEe-cC---CeEEEEEcCCCCc-eEEecC
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH--KESIQF--IFSTA-ID---GKIKAWLYDYLGS-RVDYDA 536 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~--~~~~~~--l~s~s-~d---g~i~~wd~~~~~~-~~~~~~ 536 (1132)
+|+....++-+.+||+ .|+.+..+. .+..+.+.+.. .-+|.. |+.++ .+ .+|++|.++.... +..+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777778889999995 666666664 23444443321 111221 33333 32 5799998864322 222221
Q ss_pred -------CCCeEEEEEE--cC-CCCEEEEEecCCCCCCeEEEEeCC---CC----ceeeeeccccCCceEEEEEeCCCCE
Q 001176 537 -------PGNWCTMMAY--SA-DGTRLFSCGTSKEGESHLVEWNES---EG----AIKRTYSGFRKRSLGVVQFDTTRNR 599 (1132)
Q Consensus 537 -------~~~~v~~~~~--s~-~~~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~ 599 (1132)
....++.+|+ ++ +|.+.+.... ++|.+..|.+. .+ ++++.|.... .+..|.......+
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~ 221 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGR 221 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTE
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCC
Confidence 1224667776 33 4665554442 35667777653 33 4677787644 5888999988899
Q ss_pred EEEEEcCCeEEEEECCC-----CeeEEEEeCCCCCCCcceEEEcC--CCC--EEEEEeCCCcEEEEEcCCc
Q 001176 600 FLAAGDEFQIKFWDMDN-----MNMLTTVDADGGLPASPRLRFNK--EGS--LLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 600 l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s~--~~~--~l~~~~~dg~i~iw~~~~~ 661 (1132)
|+.+-++.-|.-|+.+. ++.+.......-...|-.+++-. +++ +|++.-.+++..+|+....
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999998888888762 22333333322234566677643 433 4444445778999997654
No 452
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.29 E-value=32 Score=37.83 Aligned_cols=108 Identities=8% Similarity=-0.033 Sum_probs=51.6
Q ss_pred EEEEEcCC-----CcEEEEECCCCeEE---EEecCCCCCe--EEEEeeccCCccEEEEEec-----CCeEEEEEcCCCCc
Q 001176 466 CIVTCGDD-----KMIKVWDVVAGRKQ---YTFEGHEAPV--YSVCPHHKESIQFIFSTAI-----DGKIKAWLYDYLGS 530 (1132)
Q Consensus 466 ~l~s~~~d-----g~v~vwd~~~~~~~---~~~~~h~~~v--~~i~~~~~~~~~~l~s~s~-----dg~i~~wd~~~~~~ 530 (1132)
+++.|+.+ ..+..+|+.+.+.. ..+..-..+. .+++.. ++.+.+.|+. ...+..||+.+.+-
T Consensus 75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~---~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK---DGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE---CCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 56666654 35667777666531 2222111111 112221 2356666664 23577788776543
Q ss_pred eEEecCC-CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce
Q 001176 531 RVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 576 (1132)
Q Consensus 531 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1132)
...-... .......+...+++..+.++.+......+.+||+.+.+.
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 3221111 112222333445666667665322223367889887654
No 453
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.27 E-value=24 Score=36.26 Aligned_cols=241 Identities=13% Similarity=0.100 Sum_probs=139.7
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeee
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 915 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 915 (1132)
...-..++-+|||..-.++. .+.|--.|-.+|+....--+....-..|...| ++..-++-+.. -|.-.|-++.+...
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEE
Confidence 34456788899998888887 67788888888888766666666677888888 44444332222 34444544443211
Q ss_pred -e--eccccCCeeEEEEcCCCCEEEEEcCC---------CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCC
Q 001176 916 -K--LKGHQNRITGLAFSPTLNALVSSGAD---------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 983 (1132)
Q Consensus 916 -~--l~~h~~~V~~l~~spdg~~l~s~~~D---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 983 (1132)
. .+.-.+......|.+.|++-+|+... +.|++|+...+ .....++..|||
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG------------------~gpyGi~atpdG 200 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG------------------GGPYGICATPDG 200 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC------------------CCCcceEECCCC
Confidence 1 22234457778899999988887632 34555554432 345678889999
Q ss_pred cEEEEE-eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccc
Q 001176 984 THLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA 1062 (1132)
Q Consensus 984 ~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1062 (1132)
..-+++ .+..|...|........+....+....-..+--+|.|+.-++-...+.+..+|-..-.-+ .+. +|
T Consensus 201 svwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~-eyp----LP--- 272 (353)
T COG4257 201 SVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWI-EYP----LP--- 272 (353)
T ss_pred cEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccce-eee----CC---
Confidence 877774 556666666622232333322222233444555677887777777777877777654321 111 22
Q ss_pred cCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc-ccccCCC
Q 001176 1063 VSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE-LKWGGTP 1108 (1132)
Q Consensus 1063 ~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~-~~~~~~~ 1108 (1132)
+......++.... .++.-++--.-|.|.-+|..+.. .++..++
T Consensus 273 --gs~arpys~rVD~-~grVW~sea~agai~rfdpeta~ftv~p~pr 316 (353)
T COG4257 273 --GSKARPYSMRVDR-HGRVWLSEADAGAIGRFDPETARFTVLPIPR 316 (353)
T ss_pred --CCCCCcceeeecc-CCcEEeeccccCceeecCcccceEEEecCCC
Confidence 2222333343333 33455545555666666666644 3444433
No 454
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.17 E-value=6.4 Score=45.47 Aligned_cols=87 Identities=9% Similarity=0.158 Sum_probs=55.6
Q ss_pred EECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCC
Q 001176 863 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 942 (1132)
Q Consensus 863 wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D 942 (1132)
.|+-.|.....+ .|.+.|--+.... .+..|..-...-.+.++|+.+.+..-.+. -.+-+.|-|....++.-+.|
T Consensus 323 vdli~g~~~~~i-nh~~~vdwielne-~~~kllfrdkk~kl~l~di~s~qksmiln----fcsymqwvp~sdvivaqn~d 396 (1636)
T KOG3616|consen 323 VDLIGGQNEGFI-NHEGAVDWIELNE-RAHKLLFRDKKLKLHLVDIESCQKSMILN----FCSYMQWVPGSDVIVAQNGD 396 (1636)
T ss_pred eecccCcccccc-cccccccceeccc-hhhhhhcccccceeEEEEcccchHHHHHH----HhhhheeccCcceEEecCCC
Confidence 444444443333 4888888888877 55556555555678888887654322221 23457899988888888888
Q ss_pred CcEEEEECCCccc
Q 001176 943 AQLCMWSIDKWEK 955 (1132)
Q Consensus 943 ~~i~iwd~~~~~~ 955 (1132)
+....|+++..+.
T Consensus 397 nl~iwyn~d~peq 409 (1636)
T KOG3616|consen 397 NLCIWYNIDAPEQ 409 (1636)
T ss_pred ceEEEecCCcchh
Confidence 7555556766554
No 455
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=9 Score=37.45 Aligned_cols=147 Identities=13% Similarity=0.085 Sum_probs=80.3
Q ss_pred CccEEEEEecCC--eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc
Q 001176 507 SIQFIFSTAIDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 584 (1132)
Q Consensus 507 ~~~~l~s~s~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1132)
+|.++.+.+.-| .|++||+++++...........+..=-...-|+++..-.. +++.-..+|.++.+++..+.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence 346777776544 5999999988776654433211111111112333332222 46778889998888877766544
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC---CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 585 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG---LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+ ..+ ..|+..++.++....++.-|..+.....++..... ...++.+.|- ||...|-.-.+..|...+..+|
T Consensus 132 eG--WgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 132 EG--WGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred cc--eee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 32 222 34566677776667788888776554444432211 1223344442 5655555545555555566655
No 456
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=89.98 E-value=6.9 Score=44.53 Aligned_cols=146 Identities=15% Similarity=0.123 Sum_probs=84.1
Q ss_pred CCeeEEEEeeCCCEEEEee----CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCC---CC-CeEEEEeCCCcEEEEEcc
Q 001176 838 ESAACIALSKNDSYVMSAS----GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ---DN-NIIAIGMEDSSVQIYNVR 909 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~---~~-~~lasg~~dg~v~iwd~~ 909 (1132)
.++..++|. ||+.++-.. +|.+++=|- +.+..| ..|..+.|.|- +. .+|| .-....|.||-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLA-VQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLA-VQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEE-EeccceEEEEEec
Confidence 467888885 666554332 344443332 223333 46888999883 12 4555 4566789999876
Q ss_pred c-----ceeeeeecccc---CC--eeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEE
Q 001176 910 V-----DEVKTKLKGHQ---NR--ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 979 (1132)
Q Consensus 910 ~-----~~~~~~l~~h~---~~--V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 979 (1132)
. ++.+.....+- -+ -.++.|+|....|+.-.....-.+.++....... -....+. +-|.+.+|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srV---kaDi~~~----G~IhCACW 163 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRV---KADIKTS----GLIHCACW 163 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceE---EEeccCC----ceEEEEEe
Confidence 2 22222211111 11 2357899998888776655544566665432111 1111111 56899999
Q ss_pred CCCCcEEEEEeCCe--EEEEeC
Q 001176 980 HNDQTHLLVVHESQ--ISVYDS 999 (1132)
Q Consensus 980 s~dg~~l~~~~d~~--v~vwd~ 999 (1132)
..||++|+++-+.. -++||-
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecC
Confidence 99999999965444 568887
No 457
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.86 E-value=1.1 Score=31.44 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=27.0
Q ss_pred cCeEEEEEcCC-C--CeEEEEeCCCeEEEEEecCC
Q 001176 406 ISVNRCVWGPD-G--LMLGVAFSKHIVHLYTYNPT 437 (1132)
Q Consensus 406 ~~V~~v~~spd-g--~~las~~~dg~i~iwd~~~~ 437 (1132)
+.|.++.|||+ + ++|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999984 4 58999888999999999863
No 458
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.78 E-value=47 Score=43.27 Aligned_cols=149 Identities=13% Similarity=0.145 Sum_probs=85.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
|-..++.|.-+|+|.+ +=. .|+.++.||....... .. -..-..+++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~-lRl--Hd~~LY~~d~~~~~Wk---------~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQ-LRL--HDDRLYQFDPNTARWK---------PP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCe-EEe--ecCceeeeccccceec---------CC----------CCcccchhhhhcccCCCceEe
Confidence 4445666777777764 332 4677888877655322 10 011233455555556676665
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC------eE--EEEecCC
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG------RK--QYTFEGH 493 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~------~~--~~~~~~h 493 (1132)
.++. .+-|+..+.... ..-..+.+...+++|.- .+.++.....+.+|++... +. ...+.+-
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 133444443221 11235777888899983 4667777777899998653 11 1233333
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC
Q 001176 494 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 527 (1132)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~ 527 (1132)
.....+|.+++ ..|+.+..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEeccccc
Confidence 34566666643 4688888899888777654
No 459
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.65 E-value=0.99 Score=31.57 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=27.3
Q ss_pred CCeEEEEEeCCCC--CeEEEEeCCCcEEEEEccc
Q 001176 879 PAATFLAFHPQDN--NIIAIGMEDSSVQIYNVRV 910 (1132)
Q Consensus 879 ~~i~~l~~sp~~~--~~lasg~~dg~v~iwd~~~ 910 (1132)
+.|.++.|+|..+ .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998555 6999998899999999985
No 460
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.62 E-value=41 Score=37.99 Aligned_cols=40 Identities=8% Similarity=0.053 Sum_probs=19.7
Q ss_pred EEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 609 IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
+.+||..+.+....-..+.. .-...+..-++.++++|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence 45788877654322221111 11223344467777777753
No 461
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.33 E-value=29 Score=39.64 Aligned_cols=275 Identities=16% Similarity=0.112 Sum_probs=134.9
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
....|.++.|.-.|. +-+|+.|| +..+|..+++.++...- .....|..+..+-.|+ |.
T Consensus 163 ~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg~-LW 220 (671)
T COG3292 163 KDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQGR-LW 220 (671)
T ss_pred cCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcCc-EE
Confidence 567899999999997 44556555 56677777766542110 1113455555554554 66
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe-cCCC--CCeE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHE--APVY 498 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~--~~v~ 498 (1132)
+|+.+| |.+.+.++.+....... --.+.|..+.-..+|. +-.|+..|-.+. ....+...... +-|. ..|.
T Consensus 221 VGTdqG-v~~~e~~G~~~sn~~~~--lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vn 293 (671)
T COG3292 221 VGTDQG-VYLQEAEGWRASNWGPM--LPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVN 293 (671)
T ss_pred EEeccc-eEEEchhhccccccCCC--CcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcccccc
Confidence 777777 77777666322111000 1233454444444444 555665554332 22332222222 2222 2333
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcC--CCCEEEEEecCCCCCCeEEEEeCCCCce
Q 001176 499 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWNESEGAI 576 (1132)
Q Consensus 499 ~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1132)
++.. +.+ .-|-+++.+|.+++=+-+-..........+..+..++.+| .+..+-... ..+.+.+-+..+|..
T Consensus 294 sL~~--D~d-GsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~~ 366 (671)
T COG3292 294 SLWL--DTD-GSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGEL 366 (671)
T ss_pred ceee--ccC-CCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCcE
Confidence 3333 333 2456666666665543221111111111111111122222 111111111 122355556666777
Q ss_pred eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 001176 577 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 655 (1132)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 655 (1132)
++.........|+..++..++ .+-.|+...-+..|+..+ +.......+.. .+.|..+.=.|+++ |..|+.+|.++.
T Consensus 367 v~sv~q~Rg~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~-ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 367 VRSVHQLRGMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLP-SSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEeeeccccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCc-ccceeeeeecCCCC-EEEeccCCeEec
Confidence 666554444467777777744 455566554566676665 33333332221 24677777788887 777888877653
No 462
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.09 E-value=0.56 Score=55.04 Aligned_cols=168 Identities=14% Similarity=0.137 Sum_probs=93.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCC--CccccccceeeeecccccccccccccCCCCcCeEEEEEc---CC
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS--RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG---PD 416 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---pd 416 (1132)
..++|-.+.|-.....-++ -.-|...||+++- |+....-.+++ ...-...+.-|.|. ++
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wcp~~~~ 194 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWCPIAVN 194 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEee--------------cCcCCCCcceeeecccccc
Confidence 4567777777542211111 2236788998763 44332212211 11222333444454 46
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEE-----------ecCCCcEEEEEEcCCCcEEEEECC---
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-----------AHPNKQLCIVTCGDDKMIKVWDVV--- 482 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~-----------s~d~~~~~l~s~~~dg~v~vwd~~--- 482 (1132)
..++..+-.+++|++..++.... ..+.+|..++..++| ||||+ .+++...||.++.|.+.
T Consensus 195 ~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qiyi~g 268 (1283)
T KOG1916|consen 195 KVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQIYITG 268 (1283)
T ss_pred cceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeeeeeec
Confidence 77888888889988887776433 135568877777664 78998 88999999988888653
Q ss_pred --CCeEEEEecCCC-CCeEEEEeeccCC-------ccEEEEEec-CCeEEEEEcCCCCce
Q 001176 483 --AGRKQYTFEGHE-APVYSVCPHHKES-------IQFIFSTAI-DGKIKAWLYDYLGSR 531 (1132)
Q Consensus 483 --~~~~~~~~~~h~-~~v~~i~~~~~~~-------~~~l~s~s~-dg~i~~wd~~~~~~~ 531 (1132)
.-++++.++.|. .+-.|.-++.... -.++++++. ...+++|.-..-++.
T Consensus 269 ~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 269 KIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 234455666666 2222221221110 123444443 456888865544443
No 463
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.04 E-value=13 Score=41.45 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=90.6
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccC------CccEEEEEecCCeEEEEEcCCCC
Q 001176 456 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE------SIQFIFSTAIDGKIKAWLYDYLG 529 (1132)
Q Consensus 456 v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~------~~~~l~s~s~dg~i~~wd~~~~~ 529 (1132)
+-...+...+++..|+....++-.|++.|+.+..+.-|..- -+.+.|.. +.+.|+ |-.+..|.-.|.+..+
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccC
Confidence 33334444456667778888999999999999998877765 34454432 123444 4445555556666554
Q ss_pred ceEEecCCCCeEEEEEEc----CCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEc
Q 001176 530 SRVDYDAPGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 605 (1132)
Q Consensus 530 ~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 605 (1132)
...........++.-.|| ...-++++++. .|-|++||--.-+....+.+..+ .|..+..+.+|.++++.+.
T Consensus 549 NKi~v~esKdY~tKn~Fss~~tTesGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMTTESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATCK 623 (776)
T ss_pred CceeeeeehhccccccccccccccCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEeec
Confidence 322222111122222222 23347888775 55599999554444445555555 7888999999999888764
Q ss_pred CCeEEEEECC
Q 001176 606 EFQIKFWDMD 615 (1132)
Q Consensus 606 dg~i~iwd~~ 615 (1132)
..+.+-|+.
T Consensus 624 -~yllL~d~~ 632 (776)
T COG5167 624 -NYLLLTDVP 632 (776)
T ss_pred -ceEEEEecc
Confidence 355555543
No 464
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=88.99 E-value=56 Score=38.70 Aligned_cols=390 Identities=12% Similarity=0.096 Sum_probs=0.0
Q ss_pred EEEccCCCeEEEEEcCCCcEEEEecCC-CccccccceeeeecccccccccccccCCC-------CcCeEEEEEcC-----
Q 001176 349 MDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDA-------AISVNRCVWGP----- 415 (1132)
Q Consensus 349 ~~~spdg~~lla~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~v~~sp----- 415 (1132)
++..|.|+ .++.+..++.+.|+.++. ...... ...+ ...|.+++|-.
T Consensus 49 l~vDP~~R-~i~v~a~e~~~~v~~l~~~~~~~~~-------------------~~~~~~~pi~s~~~i~~~~FL~~~~~~ 108 (504)
T PF10433_consen 49 LAVDPSGR-CIAVSAYEGNFLVYPLNRSLDSDIA-------------------FSPHINSPIKSEGNILDMCFLHPSVGY 108 (504)
T ss_dssp EEE-TTSS-EEEEEEBTTEEEEEE-SS----T-T-------------------T---EEEE--S-SEEEEEEEES---S-
T ss_pred EEECCcCC-EEEEEecCCeEEEEEeccccccccc-------------------ccccccccccCCceEEEEEEEecccCC
Q ss_pred CCCeEEEEeCCCe------EEEEEecCCCceeeeeeeec------ccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 416 DGLMLGVAFSKHI------VHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 416 dg~~las~~~dg~------i~iwd~~~~~~~~~~~~l~~------h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
+...+|.--.+.. .+-|+...+........-.. +..+..-+..-.... .++.++ ++.+.+-+...
T Consensus 109 ~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~g--gllV~~-~~~i~y~~~~~ 185 (504)
T PF10433_consen 109 DNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPG--GLLVGG-ENIIIYKNHLI 185 (504)
T ss_dssp SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT---SEEEEE-SSEEEEEE---
T ss_pred CCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCc--EEEEEC-CEEEEEecccc
Q ss_pred C---eEEEEecCC----CCCeEEEEe-----eccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCC-CCeEEEEEEcC
Q 001176 484 G---RKQYTFEGH----EAPVYSVCP-----HHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAP-GNWCTMMAYSA 548 (1132)
Q Consensus 484 ~---~~~~~~~~h----~~~v~~i~~-----~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~-~~~v~~~~~s~ 548 (1132)
+ .....+... ..-+.+.+. ....++..++.+..+|.+....+.... ......+. .....++++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~ 265 (504)
T PF10433_consen 186 GSGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLK 265 (504)
T ss_dssp ---TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEES
T ss_pred cccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEc
Q ss_pred CC-CEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEe----CCCC------EEEEEE---cCCeEEEEEC
Q 001176 549 DG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD----TTRN------RFLAAG---DEFQIKFWDM 614 (1132)
Q Consensus 549 ~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~------~l~~~~---~dg~i~iwd~ 614 (1132)
+| .+++.++. .+|+.+..|....-+.+.++.... +|..+++. .... .+++++ .+|.+++..-
T Consensus 266 ~g~d~lf~gs~--~gds~l~~~~~~~l~~~~~~~N~~--Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~ 341 (504)
T PF10433_consen 266 NGGDYLFVGSE--FGDSQLLQISLSNLEVLDSLPNWG--PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN 341 (504)
T ss_dssp TT--EEEEEES--SS-EEEEEEESESEEEEEEE------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred CCCEEEEEEEe--cCCcEEEEEeCCCcEEEEeccCcC--CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Q ss_pred CCCee--EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC-CcceeeeeccccccccccCCCCCCCCCccccc
Q 001176 615 DNMNM--LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS-DGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 691 (1132)
Q Consensus 615 ~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1132)
.-+-. ......-.+...++.+....+....+..+....-+++.+. ..
T Consensus 342 Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d------------------------------ 391 (504)
T PF10433_consen 342 GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNETRVLQISEGD------------------------------ 391 (504)
T ss_dssp SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEEEEEEES---------------------------------
T ss_pred cCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCceEEEEEeccc------------------------------
Q ss_pred ccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccc
Q 001176 692 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 771 (1132)
Q Consensus 692 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1132)
..+.
T Consensus 392 ----------------------------------------------------------------------------~~e~ 395 (504)
T PF10433_consen 392 ----------------------------------------------------------------------------DGEE 395 (504)
T ss_dssp -----------------------------------------------------------------------------SSE
T ss_pred ----------------------------------------------------------------------------CCcc
Q ss_pred eEEE---EEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeC
Q 001176 772 VVRL---IYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 848 (1132)
Q Consensus 772 i~~~---~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~d 848 (1132)
+..+ .|..+...|+++.-.+...+ .+....+++.+...+.....-... .+..-..|...+
T Consensus 396 ~~e~~~~~f~~~~~Tl~~~~~~~~~iv-------------QVt~~~i~l~~~~~~~~~~~w~~~----~~~~I~~a~~~~ 458 (504)
T PF10433_consen 396 VEEVEEDGFDTDEPTLAAGNVGDGRIV-------------QVTPKGIRLIDLEDGKLTQEWKPP----AGSIIVAASIND 458 (504)
T ss_dssp EEEE---TS-SSS-EEEEEEETTTEEE-------------EEESSEEEEEESSSTSEEEEEE-T----TS---SEEEESS
T ss_pred hhhhhhccCCCCCCCeEEEEcCCCeEE-------------EEecCeEEEEECCCCeEEEEEeCC----CCCeEEEEEECC
Q ss_pred CCEEEEeeCCeEEEEECCCCeEEEEeeCC-----CCCeEEEEEeC
Q 001176 849 DSYVMSASGGKVSLFNMMTFKVMTMFMSP-----PPAATFLAFHP 888 (1132)
Q Consensus 849 g~~la~~sdg~i~vwd~~~~~~~~~~~~~-----~~~i~~l~~sp 888 (1132)
+..+++.+++.+..+.+............ ...|.|+...|
T Consensus 459 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 459 PQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
No 465
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.89 E-value=21 Score=39.22 Aligned_cols=181 Identities=10% Similarity=-0.004 Sum_probs=98.5
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCCCc
Q 001176 925 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLEC 1003 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~ 1003 (1132)
+.+-|...++.|++. ..|.+.=|.++....-....... .. .+++.++.||+|.+.+|+ -.+++|.+++..+..
T Consensus 26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm--~d---~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDM--DD---KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeee--cC---CCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence 445554444444433 34446666665543111101111 11 157899999999999999 579999999882222
Q ss_pred eeec--CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCC
Q 001176 1004 SRSW--SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN 1081 (1132)
Q Consensus 1004 ~~~~--~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 1081 (1132)
.... .....-+..|....|+.+ .-+|..+.. -+.+|.+...+.--+ .+..|+..|--..|.++..-
T Consensus 100 ~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pekrslR----------lVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 100 SQLEYTQECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPEKRSLR----------LVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred hhhHHHHHhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchhhhhhh----------hhhhcccCccEEEEccccce
Confidence 1111 111111456888999876 556666643 467776655433211 23467788888999984444
Q ss_pred eEEEEe-CCCcEEEEecCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 001176 1082 QIALGM-SDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTG 1126 (1132)
Q Consensus 1082 ~l~s~~-~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1126 (1132)
.|++.+ ..+.+.=+-++++. ...-|.++.+ +|+.|++++|--
T Consensus 168 ~LL~t~~~~n~lnpf~~~~~~--v~kLPkfe~~-~p~~~~~~kp~l 210 (657)
T KOG2377|consen 168 ILLSTTVLENVLNPFHFRAGT--MSKLPKFEIE-LPAAPKSTKPSL 210 (657)
T ss_pred EeeeccccccccccEEEeece--eeeccceeec-CCCCccCCCCcc
Confidence 455555 45555555665544 2222233332 444455554433
No 466
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.83 E-value=34 Score=36.77 Aligned_cols=194 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred eeEEEEeeCCCEEEEeeCC-------------eEEEEECCCCeEEEEee------CCCCCeEEEEEeCCCC----CeEEE
Q 001176 840 AACIALSKNDSYVMSASGG-------------KVSLFNMMTFKVMTMFM------SPPPAATFLAFHPQDN----NIIAI 896 (1132)
Q Consensus 840 v~~~~~s~dg~~la~~sdg-------------~i~vwd~~~~~~~~~~~------~~~~~i~~l~~sp~~~----~~las 896 (1132)
|..+...+++++-+.=+.. +|.+||+.+.+.++++. ...+....+++...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Q ss_pred EeCC-CcEEEEEcccceeeeeeccccCC-------------------eeEEEEcC---CCCEEEEEcCCCcEEEEECCCc
Q 001176 897 GMED-SSVQIYNVRVDEVKTKLKGHQNR-------------------ITGLAFSP---TLNALVSSGADAQLCMWSIDKW 953 (1132)
Q Consensus 897 g~~d-g~v~iwd~~~~~~~~~l~~h~~~-------------------V~~l~~sp---dg~~l~s~~~D~~i~iwd~~~~ 953 (1132)
+... +.|.|+|+.+++..+.+..+... +.+++.+| ++++|.-..-.+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Q ss_pred ccccceeeeCC------CCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCC----CceeecCCCCCCCCCeEEEEE
Q 001176 954 EKLKSRFIQAP------AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL----ECSRSWSPKDALPAPISSAIY 1022 (1132)
Q Consensus 954 ~~~~~~~~~~~------~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~----~~~~~~~~~~~h~~~i~~i~~ 1022 (1132)
........... ..--........++++++|..+++ ...+.|..|+..+ +....+......-....++.+
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i 241 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKI 241 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeee
Q ss_pred cc--CCCEEEEEec
Q 001176 1023 SC--DGLLVYAGFC 1034 (1132)
Q Consensus 1023 s~--dg~~las~~~ 1034 (1132)
.+ +|.+.+..+.
T Consensus 242 ~~~~~g~L~v~snr 255 (287)
T PF03022_consen 242 DPEGDGYLWVLSNR 255 (287)
T ss_dssp -T--TS-EEEEE-S
T ss_pred ccccCceEEEEECc
No 467
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.47 E-value=13 Score=33.91 Aligned_cols=113 Identities=16% Similarity=0.114 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEEcc--------cceeeeeeccccCCeeEEEEcC----CCCEEEEEcCCCcEEEE
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVR--------VDEVKTKLKGHQNRITGLAFSP----TLNALVSSGADAQLCMW 948 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd~~--------~~~~~~~l~~h~~~V~~l~~sp----dg~~l~s~~~D~~i~iw 948 (1132)
|+.-.|.. ....|+.++.-|.|.|++.. ....+..+. -...|++|+-.+ +++-++..+....+..|
T Consensus 1 VaiGkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaY 78 (136)
T PF14781_consen 1 VAIGKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAY 78 (136)
T ss_pred CeEEEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEE
Q ss_pred ECCCcccccceeeeCCCCCCCCCCCceeEEE----CCCCcEEEEEeCCeEEEEeCCCCce
Q 001176 949 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQF----HNDQTHLLVVHESQISVYDSKLECS 1004 (1132)
Q Consensus 949 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----s~dg~~l~~~~d~~v~vwd~~~~~~ 1004 (1132)
|+.....+-.+.+. +.+.++.+ ..+..+++++.+..|.-||..+..+
T Consensus 79 DV~~N~d~Fyke~~---------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 79 DVENNSDLFYKEVP---------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred EcccCchhhhhhCc---------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
No 468
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.46 E-value=44 Score=36.81 Aligned_cols=165 Identities=14% Similarity=0.143 Sum_probs=90.8
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCc------EEEEEccc--c--eee-----eeeccccC--------CeeEEEEcCCCC
Q 001176 878 PPAATFLAFHPQDNNIIAIGMEDSS------VQIYNVRV--D--EVK-----TKLKGHQN--------RITGLAFSPTLN 934 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~spdg~ 934 (1132)
-+.+..|.+.+.++. +++.+++|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 456788999863454 445566666 66555543 1 001 11111111 234788888898
Q ss_pred EEEEEcCC------CcEEEEECCCcccccceeeeCCC-------CCCCCCCCceeEEECCCCcEEEEE------eCC--e
Q 001176 935 ALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLVV------HES--Q 993 (1132)
Q Consensus 935 ~l~s~~~D------~~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~l~~~------~d~--~ 993 (1132)
++++.-.+ ..|+.++.. +.......+.... ..........+++++|||+.|++. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887777 778888876 4432222111110 111223567899999999955542 132 1
Q ss_pred -------EEE--EeCC--CCceeecCCCCC------CCCCeEEEEEccCCCEEEEEe-----cCCcEEEEeCC
Q 001176 994 -------ISV--YDSK--LECSRSWSPKDA------LPAPISSAIYSCDGLLVYAGF-----CDGAIGVFDAE 1044 (1132)
Q Consensus 994 -------v~v--wd~~--~~~~~~~~~~~~------h~~~i~~i~~s~dg~~las~~-----~dg~i~vwd~~ 1044 (1132)
+++ ||.. +.....+..... ....|+.+.+-+|+++|+.== ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 4442 222333221111 356889999999999877532 23455555443
No 469
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=88.35 E-value=82 Score=39.86 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=17.0
Q ss_pred cccceEEEEEecCCceEEeeccc
Q 001176 768 AASKVVRLIYTNSGLSLLALASN 790 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~d 790 (1132)
+-+.+.+++++|||...++-..+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCc
Confidence 45667899999999866665444
No 470
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.35 E-value=23 Score=42.42 Aligned_cols=116 Identities=11% Similarity=0.091 Sum_probs=76.2
Q ss_pred CeEEEEEcC--CCCeEEEEeCCCeEEEEEecC-------C----------CceeeeeeeecccCCEEEEEEe--cCCCcE
Q 001176 407 SVNRCVWGP--DGLMLGVAFSKHIVHLYTYNP-------T----------GELRQHLEIDAHVGGVNDIAFA--HPNKQL 465 (1132)
Q Consensus 407 ~V~~v~~sp--dg~~las~~~dg~i~iwd~~~-------~----------~~~~~~~~l~~h~~~v~~v~~s--~d~~~~ 465 (1132)
.|+.|...- +...|+.|.+||.|.+|.+++ . ..+.+...+. -...++.+++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence 466665544 556899999999999997632 0 0011222222 23478999998 6555
Q ss_pred EEEEEcCCCcEEEEECCCC--eEEE-EecCCCCCeEEEEeeccCC---cc-EEEEEecCCeEEEEEc
Q 001176 466 CIVTCGDDKMIKVWDVVAG--RKQY-TFEGHEAPVYSVCPHHKES---IQ-FIFSTAIDGKIKAWLY 525 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~--~~~~-~~~~h~~~v~~i~~~~~~~---~~-~l~s~s~dg~i~~wd~ 525 (1132)
+||.++....|.||-.... +... .-..|...|.+|+|.++.. |. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7888888888888754432 2111 1112667899999987652 22 7888999999999887
No 471
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.12 E-value=2.3 Score=46.13 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=94.6
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEE-EEee-C-CC---CCeE-EEEEeCCCCCeEEEEeCCCcEEEE-Ec
Q 001176 837 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVM-TMFM-S-PP---PAAT-FLAFHPQDNNIIAIGMEDSSVQIY-NV 908 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~-~~~~-~-~~---~~i~-~l~~sp~~~~~lasg~~dg~v~iw-d~ 908 (1132)
...+..+-+.|||+.+.+-+..++.++++.+.... +.+. . +. ..|+ ++..-. +|.-|.+++.||-|.-| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeeee
Confidence 56788889999999999888889999998765432 1111 1 11 1233 223233 67777889999998877 44
Q ss_pred ccc-e----eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCC
Q 001176 909 RVD-E----VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 983 (1132)
Q Consensus 909 ~~~-~----~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 983 (1132)
..+ . .++.++-...++..+.--...+-+++-...|++.++.....+.+. .+... .....+++||.+
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL---~~~~~------~~~~~~~~Sp~~ 369 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL---FERAY------QAPQLVAMSPNQ 369 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee---hhhhh------cCcceeeeCccc
Confidence 332 1 112222222334333322233457777788888877654433111 11111 245678999999
Q ss_pred cEEEEEeCCeEEEEeC
Q 001176 984 THLLVVHESQISVYDS 999 (1132)
Q Consensus 984 ~~l~~~~d~~v~vwd~ 999 (1132)
.++++-+.|.++++.+
T Consensus 370 ~~Ll~e~~gki~~~~l 385 (733)
T COG4590 370 AYLLSEDQGKIRLAQL 385 (733)
T ss_pred chheeecCCceEEEEe
Confidence 9999988999999988
No 472
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.75 E-value=2.1 Score=46.33 Aligned_cols=171 Identities=11% Similarity=0.094 Sum_probs=94.8
Q ss_pred eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee-e-ccccC----Cee-EEEEcCCCCEEEEEcC
Q 001176 869 KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-L-KGHQN----RIT-GLAFSPTLNALVSSGA 941 (1132)
Q Consensus 869 ~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l-~~h~~----~V~-~l~~spdg~~l~s~~~ 941 (1132)
+.+..+......+..+-..| +|+.|..-+. ..+.++++.+.....+ + ....+ .|+ .+..-..|..|..+..
T Consensus 211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 34444555667788899999 8888877655 5789998876543221 1 11111 122 2222335667888899
Q ss_pred CCcEEEE-ECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCCCceeecCCCCCCCCCeEE
Q 001176 942 DAQLCMW-SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISS 1019 (1132)
Q Consensus 942 D~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~ 1019 (1132)
||.|.-| |+..........++..+-. ..++..+.-..+.+-++. ...|++.++..+......+... -..+.-
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~---pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---~~~~~~ 362 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLA---PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA---YQAPQL 362 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccC---cccceeeccccccceEEEEcCCCceeeeecccCcceehhhh---hcCcce
Confidence 9998888 4433222111111111100 012222221222233333 4567777776643333332222 235677
Q ss_pred EEEccCCCEEEEEecCCcEEEEeCCCcce
Q 001176 1020 AIYSCDGLLVYAGFCDGAIGVFDAETLRF 1048 (1132)
Q Consensus 1020 i~~s~dg~~las~~~dg~i~vwd~~~~~~ 1048 (1132)
++|||.+.+|++-. .|.|+++.+++-..
T Consensus 363 ~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 363 VAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred eeeCcccchheeec-CCceEEEEecCCCC
Confidence 89999999998754 67899999886543
No 473
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.39 E-value=6.6 Score=49.11 Aligned_cols=156 Identities=13% Similarity=0.198 Sum_probs=89.4
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE--------cCC
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--------GPD 416 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--------spd 416 (1132)
.=+.+-+-|.=++.-+| .|+.+.+|+.+++..... +.+-+..|..|.. -|.
T Consensus 80 ~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~LvkPkpgvFv~~ 138 (1311)
T KOG1900|consen 80 CKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAE-------------------YDGLSHTILKVGLVKPKPGVFVPE 138 (1311)
T ss_pred eeeeeccchhhcceEEE--eCCeEEEEEcCCCCcccc-------------------ccchhhhheeeeeecCCCCcchhh
Confidence 33444444432234444 489999999998655432 3344445555542 333
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeee------eeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC----CC--
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQH------LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV----AG-- 484 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~------~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~----~~-- 484 (1132)
=+++.+-..--.|.++-+.-.+..... ..+....-.|+|+....+|+ .++ +|.|| .+|.+. +|
T Consensus 139 IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~dg--~lyEl~Yq~~~gWf 213 (1311)
T KOG1900|consen 139 IQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRDG--NLYELVYQAEDGWF 213 (1311)
T ss_pred hheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecCC--CEEEEEEeccCchh
Confidence 344444444455666655432211111 12222345789999888887 444 55666 445432 11
Q ss_pred -e-E----------------EEEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC
Q 001176 485 -R-K----------------QYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 528 (1132)
Q Consensus 485 -~-~----------------~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 528 (1132)
+ + +-.+. .+..+|..+.+..+. .++.+-+..|+|.+||+...
T Consensus 214 ~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 214 GSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccCC
Confidence 1 1 11223 567899999985543 78999999999999998753
No 474
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.96 E-value=2.4 Score=29.18 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=23.4
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCC--CcEEEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNV--GDISLW 371 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~d--g~v~iw 371 (1132)
....-.+..|||||++++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455788999999999888888777 777666
No 475
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.69 E-value=16 Score=45.83 Aligned_cols=146 Identities=12% Similarity=0.205 Sum_probs=92.9
Q ss_pred eCCCcEEEEEcccceeeeeeccccCCeeEEEEc--------CCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCC--
Q 001176 898 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS--------PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR-- 967 (1132)
Q Consensus 898 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s--------pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~-- 967 (1132)
+-|..+.+|+..++.....+.+-...|..+..- |.=+++...+.--.|.++-+.-.+.... ...+..+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~--~~~f~~~~~ 173 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGE--LSIFNTSFK 173 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCc--cccccccee
Confidence 467889999999987788888777777776542 2234555555555677776543322111 1111111
Q ss_pred -CCCCCCceeEEECCCCcEEEEEeCCeEE--EEeC-C---CC-cee-------------ecCCCC-CCCCCeEEEEEccC
Q 001176 968 -QSPLVGETKVQFHNDQTHLLVVHESQIS--VYDS-K---LE-CSR-------------SWSPKD-ALPAPISSAIYSCD 1025 (1132)
Q Consensus 968 -~~~~~~v~~~~~s~dg~~l~~~~d~~v~--vwd~-~---~~-~~~-------------~~~~~~-~h~~~i~~i~~s~d 1025 (1132)
...+..|.++....+|+.+++|.||.+. +|.. . ++ |-+ .+.... .+..+|..++....
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 0112568889989999999999888543 2222 1 11 111 011111 44679999999888
Q ss_pred CCEEEEEecCCcEEEEeCCC
Q 001176 1026 GLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 1026 g~~las~~~dg~i~vwd~~~ 1045 (1132)
-..|.+-++.|+|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88999999999999999986
No 476
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=86.48 E-value=62 Score=36.44 Aligned_cols=226 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCC
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
+..+.++..+|.|.-.|.+++..+-...... ....+.+-.+..+|+ ++.++.++.++..|..+|+.+....... .
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~ 142 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGG-S 142 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcC-cceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCC-C
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
..+.=.+......+..++.++.+...|..++.......... .....-........++.+..+ . ++.+.-.|..+|
T Consensus 143 -~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~-~-~~~~~a~~~~~G 219 (370)
T COG1520 143 -PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG-Y-DGILYALNAEDG 219 (370)
T ss_pred -eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC-C-cceEEEEEccCC
Q ss_pred ceeeeeccccCCceEEE----EEeCCC----CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEE
Q 001176 575 AIKRTYSGFRKRSLGVV----QFDTTR----NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAV 646 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~----~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1132)
......+.......... .+.... ..++.++.++.+...|..+++.+-...................+
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~----- 294 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAG----- 294 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecC-----
Q ss_pred EeCCCcEEEEE
Q 001176 647 TTSDNGIKILA 657 (1132)
Q Consensus 647 ~~~dg~i~iw~ 657 (1132)
.||.+.++.
T Consensus 295 --~dG~v~~~~ 303 (370)
T COG1520 295 --ADGKVYIGF 303 (370)
T ss_pred --CCccEEEEE
No 477
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=86.33 E-value=55 Score=42.71 Aligned_cols=66 Identities=11% Similarity=0.009 Sum_probs=46.7
Q ss_pred CCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001176 972 VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1040 (1132)
Q Consensus 972 ~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~v 1040 (1132)
..|+++++-.+.++++....|.+....-.+. ...+ ...+..+.|.+++......+.| -..+|.++-
T Consensus 703 ~~i~a~Avv~~~~fvald~qg~lt~h~k~g~-p~~l-~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf~ 768 (1774)
T PF11725_consen 703 RVITAFAVVNDNKFVALDDQGDLTAHQKPGR-PVPL-SRPGLSGEIKDLALDEKQNLYA-LTSTGELFR 768 (1774)
T ss_pred CcceeEEEEcCCceEEeccCCccccccCCCC-CccC-CCCCCCcchhheeeccccceeE-ecCCCceee
Confidence 5688899888888888888888888884333 2222 2234578999999988766555 555777765
No 478
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.28 E-value=58 Score=35.87 Aligned_cols=171 Identities=20% Similarity=0.250 Sum_probs=92.0
Q ss_pred cceEEEEEecCCceEEeecccce------eEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEE
Q 001176 770 SKVVRLIYTNSGLSLLALASNAV------HKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 843 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~dg~------i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~ 843 (1132)
+.+..+.+.+++..+++.+.+|. +..+++..... ..........+.+-+.. |..... - .....++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~~------~-~~D~Egi 90 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFPK------N-GLDPEGI 90 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCCc------C-CCChhHe
Confidence 55788889866666777676666 44444433111 01111111111111211 211110 0 2245678
Q ss_pred EEeeCCCEEEEee-C------CeEEEEECCCCeEEEEee---------------CCCCCeEEEEEeCCCCCeEEEEeC--
Q 001176 844 ALSKNDSYVMSAS-G------GKVSLFNMMTFKVMTMFM---------------SPPPAATFLAFHPQDNNIIAIGME-- 899 (1132)
Q Consensus 844 ~~s~dg~~la~~s-d------g~i~vwd~~~~~~~~~~~---------------~~~~~i~~l~~sp~~~~~lasg~~-- 899 (1132)
++.++|.++++.- + ..|+-++.. |+.+..+. ......-+|+++| +|+.|.++..
T Consensus 91 ~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~ 168 (326)
T PF13449_consen 91 AVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESP 168 (326)
T ss_pred EEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECcc
Confidence 8878888888775 5 668888876 66554442 1234578999999 7885554432
Q ss_pred ---CC--c-------EEEE--Eccc-cee----eeeecc-----ccCCeeEEEEcCCCCEEEE-----EcCCCcEEEEEC
Q 001176 900 ---DS--S-------VQIY--NVRV-DEV----KTKLKG-----HQNRITGLAFSPTLNALVS-----SGADAQLCMWSI 950 (1132)
Q Consensus 900 ---dg--~-------v~iw--d~~~-~~~----~~~l~~-----h~~~V~~l~~spdg~~l~s-----~~~D~~i~iwd~ 950 (1132)
|+ . ++|+ |..+ ++. ...+.. ....|+.+.+-+++++|+- .+....++|+.+
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 22 1 5554 4443 222 222332 4567899999999987773 123445666655
Q ss_pred C
Q 001176 951 D 951 (1132)
Q Consensus 951 ~ 951 (1132)
.
T Consensus 249 ~ 249 (326)
T PF13449_consen 249 D 249 (326)
T ss_pred E
Confidence 4
No 479
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.24 E-value=12 Score=41.73 Aligned_cols=158 Identities=14% Similarity=0.106 Sum_probs=93.7
Q ss_pred EEEeCCCCCeEE-EEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCC--------CEEEEEcCCCcEEEEECCC-c
Q 001176 884 LAFHPQDNNIIA-IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL--------NALVSSGADAQLCMWSIDK-W 953 (1132)
Q Consensus 884 l~~sp~~~~~la-sg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg--------~~l~s~~~D~~i~iwd~~~-~ 953 (1132)
+-.+.++..+|. .|.....++-.|+..|+.+.....|.+- -+.|.|+. +.|+-. ++..|.-.|..- +
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGl-S~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGL-SDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEee-cccceEEecccccC
Confidence 333332555544 4556667888899999999999888775 47788754 345544 444455445432 2
Q ss_pred ccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEE
Q 001176 954 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1032 (1132)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~ 1032 (1132)
.++.......+.+. ....+..-...| ++++ +..|.|++||--+...++..+. ....|..+..+.+|+++++.
T Consensus 549 NKi~v~esKdY~tK----n~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaT 621 (776)
T COG5167 549 NKIKVVESKDYKTK----NKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILAT 621 (776)
T ss_pred Cceeeeeehhcccc----ccccccccccCc-eEEEecCCCceeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEe
Confidence 22221111112211 112222323344 5555 6789999999855555544433 37889999999999998766
Q ss_pred ecCCcEEEEeCC--Ccceeccc
Q 001176 1033 FCDGAIGVFDAE--TLRFRCRI 1052 (1132)
Q Consensus 1033 ~~dg~i~vwd~~--~~~~~~~~ 1052 (1132)
+ ..++.+-|+. .|+...++
T Consensus 622 C-k~yllL~d~~ik~g~~aGr~ 642 (776)
T COG5167 622 C-KNYLLLTDVPIKYGQPAGRD 642 (776)
T ss_pred e-cceEEEEecccccCCccccc
Confidence 5 5677777764 34444433
No 480
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.59 E-value=39 Score=43.15 Aligned_cols=244 Identities=8% Similarity=0.063 Sum_probs=114.2
Q ss_pred CCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCC-CCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeee
Q 001176 838 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 915 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 915 (1132)
.....++|+|...++|.+. .|.|++|-...-+.......-. ..+..+.+-. ..........+..+.+|.......+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~~~~ 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLV-GISRNLVLSDDDSLHLWSIKIKTGVF 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeee-cccccceeecccceeeecccccceee
Confidence 3567899999999999998 8999999876443332222111 1222333332 22223334455566666543221111
Q ss_pred eeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEE
Q 001176 916 KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQIS 995 (1132)
Q Consensus 916 ~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~ 995 (1132)
+...+++..--+--.+ .-+ ..+.+++||..-..... .......+... .....-++.-.....-.+-...
T Consensus 115 ----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~s~~~~~~~~~~~~~~~ 183 (993)
T KOG1983|consen 115 ----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSD-LKYAGTESSNF----VPYESLSPTLSIEGLVIDLDTV 183 (993)
T ss_pred ----cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhcc-ceecccccccc----ceeeeeccceeeeccccccccc
Confidence 2222333322211123 334 77888888875422111 11111111100 0000000000000000111111
Q ss_pred EEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEe
Q 001176 996 VYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAP 1075 (1132)
Q Consensus 996 vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1075 (1132)
+|.+.-.. ....-|..++.+..+......+. +..-+.+-+|+.........+. +. ++..
T Consensus 184 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~------- 242 (993)
T KOG1983|consen 184 LISLPDAY----LGLSLIEYESLQVLYYSPTKILI-GFNRGLVVIKDRASKYVQSAYL-----PN----GQLE------- 242 (993)
T ss_pred eeeccccc----ccccccccccceeeeecCCCcce-eeeeeeeeehhcccccchhhcc-----cc----cccC-------
Confidence 11110000 00111245666666554444433 4446778888777655443332 11 1111
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCcccccCCCCCCCCCCC
Q 001176 1076 HPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLP 1116 (1132)
Q Consensus 1076 ~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~ 1116 (1132)
++ ++..++++..||.+.+||.+.+.. ...+.+++.-...
T Consensus 243 ~~-~~~~~v~~h~Dgs~~fWd~s~g~~-~~~~~~~~~~~~~ 281 (993)
T KOG1983|consen 243 SR-DGSHFVSYHTDGSYAFWDVSSGKL-QIARNPVPLVSLV 281 (993)
T ss_pred cc-CCceEEEEEecCCEEeeecCCCce-eecCccccccccC
Confidence 44 789999999999999999999875 4444444444333
No 481
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.54 E-value=74 Score=36.45 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred EEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeee-------ccccCCeeEEEEcCCC------CEE
Q 001176 870 VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-------KGHQNRITGLAFSPTL------NAL 936 (1132)
Q Consensus 870 ~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-------~~h~~~V~~l~~spdg------~~l 936 (1132)
.+..+...-.....|+|.| ++++|++--..|.|++++-.++...... ..-.+....|+++|+- .+|
T Consensus 21 ~~~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l 99 (454)
T TIGR03606 21 DKKVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV 99 (454)
T ss_pred EEEEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Q ss_pred EEEc----------CCCcEEEEECCCc----ccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCC----------
Q 001176 937 VSSG----------ADAQLCMWSIDKW----EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES---------- 992 (1132)
Q Consensus 937 ~s~~----------~D~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~---------- 992 (1132)
.... ....|.-|.+... ............+.. ..-..++|.|||.+.++..|+
T Consensus 100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~---H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~ 176 (454)
T TIGR03606 100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGND---HNGGRLVFGPDGKIYYTIGEQGRNQGANFFL 176 (454)
T ss_pred EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCC---cCCceEEECCCCcEEEEECCCCCCCcccccC
Q ss_pred -----------------------eEEEEeCCCC-----------ceeecCCCCCCCCCeEEEEEccCCCEEEE
Q 001176 993 -----------------------QISVYDSKLE-----------CSRSWSPKDALPAPISSAIYSCDGLLVYA 1031 (1132)
Q Consensus 993 -----------------------~v~vwd~~~~-----------~~~~~~~~~~h~~~i~~i~~s~dg~~las 1031 (1132)
.|.=.+.++. ....+..+ -.....++|.|+|++.++
T Consensus 177 ~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G---~RNp~Gla~dp~G~Lw~~ 246 (454)
T TIGR03606 177 PNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYG---HRNPQGLAFTPDGTLYAS 246 (454)
T ss_pred cchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEe---ccccceeEECCCCCEEEE
No 482
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.01 E-value=5 Score=39.34 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=25.7
Q ss_pred cCeEEEEEcCCC------CeEEEEeCCCeEEEEEecC
Q 001176 406 ISVNRCVWGPDG------LMLGVAFSKHIVHLYTYNP 436 (1132)
Q Consensus 406 ~~V~~v~~spdg------~~las~~~dg~i~iwd~~~ 436 (1132)
..|.+++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999954 2788889999999998764
No 483
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=84.67 E-value=64 Score=35.00 Aligned_cols=258 Identities=13% Similarity=-0.009 Sum_probs=0.0
Q ss_pred EecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee
Q 001176 777 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 856 (1132)
Q Consensus 777 ~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s 856 (1132)
+.-++++|+.|+.+|...+ +..........+.. ...|+++...+..+.|++-+
T Consensus 9 ~~~~~~~lL~GTe~Gly~~-----------------------~~~~~~~~~~kl~~----~~~v~q~~v~~~~~lLi~Ls 61 (302)
T smart00036 9 ITCDGKWLLVGTEEGLYVL-----------------------NISDQPGTLEKLIG----RRSVTQIWVLEENNVLLMIS 61 (302)
T ss_pred cccCCcEEEEEeCCceEEE-----------------------EcccCCCCeEEecC----cCceEEEEEEhhhCEEEEEe
Q ss_pred CCe--EEEEECCCCeEE---------------EEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecc
Q 001176 857 GGK--VSLFNMMTFKVM---------------TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 919 (1132)
Q Consensus 857 dg~--i~vwd~~~~~~~---------------~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 919 (1132)
|.+ ++++++...... ...-++.......++........+++....+|.++.............
T Consensus 62 gk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k 141 (302)
T smart00036 62 GKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFK 141 (302)
T ss_pred CCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhc
Q ss_pred c--------cCCeeEEEEcCC--CCEEEEEcCCCcEEEEECCC--cccccceeeeCCCCCCCCCCCceeEEECCCCcEEE
Q 001176 920 H--------QNRITGLAFSPT--LNALVSSGADAQLCMWSIDK--WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 987 (1132)
Q Consensus 920 h--------~~~V~~l~~spd--g~~l~s~~~D~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 987 (1132)
. ..++..+..+++ ...+..|+..+...++++.. ........-........ .++....+..+ .++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~--~p~~i~~l~~~--e~L 217 (302)
T smart00036 142 SKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSL--KPISVVQVPRD--EFL 217 (302)
T ss_pred ccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccccccccccccc--CceEEEEECCC--eEE
Q ss_pred EEeCCeEEEEeCCC-CceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCC--CccccccccC
Q 001176 988 VVHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP--SAYIPTYAVS 1064 (1132)
Q Consensus 988 ~~~d~~v~vwd~~~-~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~~ 1064 (1132)
.+.+....+-|..| ...+.....= .....++++. ..+|++-..++ |.|+++.+++.+..+.. ..
T Consensus 218 lc~~~~~v~Vn~~G~~~~r~~~l~w--~~~p~~~~~~--~pyll~~~~~~-ievr~l~~~~l~q~i~~~~~~-------- 284 (302)
T smart00036 218 LCYDEFGVFVNLYGKRRSRNPILHW--EFMPESFAYH--SPYLLAFHDNG-IEIRSIKTGELLQELADRETR-------- 284 (302)
T ss_pred EEECcEEEEEeCCCCccccceEEEc--CCcccEEEEE--CCEEEEEcCCc-EEEEECCCCceEEEEecCCCc--------
Q ss_pred CCCCCcEEEEeCCCCCCeEEEEeCCCcEEE
Q 001176 1065 SNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1094 (1132)
Q Consensus 1065 ~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~v 1094 (1132)
+.++|.+ .++.|.+
T Consensus 285 --------------~~r~L~~--~~~~I~~ 298 (302)
T smart00036 285 --------------KIRLLGS--SDRKILL 298 (302)
T ss_pred --------------ceEEEec--CCCeEEE
No 484
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.39 E-value=0.31 Score=53.27 Aligned_cols=141 Identities=16% Similarity=0.245 Sum_probs=98.8
Q ss_pred eeecCCCCCCceeccCC------cccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeee
Q 001176 315 VSFAGVAHTPNVYSQDD------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWD 388 (1132)
Q Consensus 315 ~~~~~~g~~~~~~~~d~------~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~ 388 (1132)
..+.+.++.+++...+. .-++.+..+..++.-..++|..+|..+++.+-..+.+.|||+.+...-.-
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL------- 112 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL------- 112 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH-------
Confidence 34455555555554433 34566666667778888999999987777777889999999986532210
Q ss_pred cccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEE
Q 001176 389 ISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 468 (1132)
Q Consensus 389 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~ 468 (1132)
..-..|.... +.|++-+..++.+...|.+.|++..+.+... ....|..+++++++.+++. .+
T Consensus 113 ----------E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vi 174 (615)
T KOG2247|consen 113 ----------ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VI 174 (615)
T ss_pred ----------hccCcchHHH--HhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---ee
Confidence 0011122222 7899999999999999999999988765443 2333999999999999985 77
Q ss_pred EEcCCCcEEEEE
Q 001176 469 TCGDDKMIKVWD 480 (1132)
Q Consensus 469 s~~~dg~v~vwd 480 (1132)
.++.|..+.+-.
T Consensus 175 l~dcd~~L~v~~ 186 (615)
T KOG2247|consen 175 LCDCDNTLSVTT 186 (615)
T ss_pred ecCcHHHHHHhh
Confidence 788787766544
No 485
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=84.32 E-value=85 Score=36.10 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=46.8
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
....|..+.+...|. +-+|+.|| +..||..+++.++.. ......+|..+.-+-.|+ +..|+.+| |.+.+.+.
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 345788888888775 55677888 777887777655421 112235677777777776 67777665 66666444
No 486
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=84.01 E-value=4.9 Score=47.77 Aligned_cols=134 Identities=9% Similarity=0.122 Sum_probs=79.2
Q ss_pred CeeEEEEcc-CCCeEEEEEcCCCcEEEEecCCCccccccceeeeeccc--ccccccccccCCCCcCeEEEEEc--CCCCe
Q 001176 345 NVMSMDFHP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISA--ASMPLQNALLNDAAISVNRCVWG--PDGLM 419 (1132)
Q Consensus 345 ~V~~~~~sp-dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~V~~v~~s--pdg~~ 419 (1132)
.|+.|.... .+..+|+.+..||.|.+|.+++--...... .-+... ................++.+++. ...++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceE
Confidence 455555444 234588899999999999874311000000 000000 00001111122345689999998 78889
Q ss_pred EEEEeCCCeEEEEEecCCC-ceeeeeeeecccCCEEEEEEecCCC--c--EEEEEEcCCCcEEEEEC
Q 001176 420 LGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIAFAHPNK--Q--LCIVTCGDDKMIKVWDV 481 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~~~-~~~~~~~l~~h~~~v~~v~~s~d~~--~--~~l~s~~~dg~v~vwd~ 481 (1132)
||+++....|.||-..... ..... .-..|...|-+|+|.++.. . ..+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~-~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHV-PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccc-cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999888888888766521 11111 1113566799999987651 1 36788889999999887
No 487
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.93 E-value=4.3 Score=41.46 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=54.5
Q ss_pred EcCCCCEEEEEcCCCcEEEEECCCcccccce-ee-eCCCCC----CCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCC
Q 001176 929 FSPTLNALVSSGADAQLCMWSIDKWEKLKSR-FI-QAPAGR----QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1002 (1132)
Q Consensus 929 ~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~-~~-~~~~~~----~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~ 1002 (1132)
+..++.+|+..+.+|.+++||+.+.+..... .+ ...... ......|..+.++.+|.-+++-.+|..+.|+.+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999997754332 00 011100 02235788899999999988877788999998665
Q ss_pred ceee
Q 001176 1003 CSRS 1006 (1132)
Q Consensus 1003 ~~~~ 1006 (1132)
+-..
T Consensus 98 ~W~~ 101 (219)
T PF07569_consen 98 CWIR 101 (219)
T ss_pred eeEE
Confidence 5433
No 488
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=83.69 E-value=78 Score=35.21 Aligned_cols=41 Identities=10% Similarity=-0.091 Sum_probs=19.4
Q ss_pred CeEEEEEcCCCCceEEecCCC-CeEEEEEEcCCCCEEEEEec
Q 001176 518 GKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 518 g~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~ 558 (1132)
..+.+||..+.+-...-.... ......+..-+++..+.++.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 457788877654333211111 11111222346677777765
No 489
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=83.57 E-value=1.3e+02 Score=37.69 Aligned_cols=173 Identities=12% Similarity=0.132 Sum_probs=101.7
Q ss_pred CCCeeEEEEe---e----CCCEEEEeeCCeEEEEECC------C---------CeEEEEeeC---CCCCeEEEEEeCCCC
Q 001176 837 EESAACIALS---K----NDSYVMSASGGKVSLFNMM------T---------FKVMTMFMS---PPPAATFLAFHPQDN 891 (1132)
Q Consensus 837 ~~~v~~~~~s---~----dg~~la~~sdg~i~vwd~~------~---------~~~~~~~~~---~~~~i~~l~~sp~~~ 891 (1132)
..+|..|+|+ . ..++|++-....+.|+... . ..++..+.. ...+...++|+|.+.
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence 6788889888 2 2357777777888888721 1 122333331 223567788888667
Q ss_pred CeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCC
Q 001176 892 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 971 (1132)
Q Consensus 892 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 971 (1132)
..+|+.+..|...||++..+... +. .... +.....|.| +.|...-
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~~-----~~-~~~~----------~~~~~~gsi-~~d~~e~------------------ 203 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPKR-----KS-SNLR----------LSRNISGSI-IFDPEEL------------------ 203 (765)
T ss_pred ceEEEEeccCcEEEEEecccccc-----CC-ccee----------eccCCCccc-cCCCccc------------------
Confidence 78888888888888888221110 00 1111 112222333 2222110
Q ss_pred CCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccC--CCEEEEEecCCcEEEEeCCCc
Q 001176 972 VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCD--GLLVYAGFCDGAIGVFDAETL 1046 (1132)
Q Consensus 972 ~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~d--g~~las~~~dg~i~vwd~~~~ 1046 (1132)
..-..+.|.++-..|++++...+.++|+.................|..+.-+|+ +..++.. ...|...++...
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 234578899998999999999999999944433221111222578889988887 3333332 367888888763
No 490
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.41 E-value=26 Score=34.94 Aligned_cols=162 Identities=18% Similarity=0.262 Sum_probs=87.0
Q ss_pred cccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeeccc---c---eeEEE-eeccc--cC
Q 001176 733 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN---A---VHKLW-KWQRT--ER 803 (1132)
Q Consensus 733 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g---~i~vw-~~~~~--~~ 803 (1132)
+..+++.....|.+|++........+ .++ .-+.|..++++..|.+|++.-.+ . .+++| ++... ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~---~F~---Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~ 102 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLC---TFS---TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEEN 102 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeE---EEc---chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccC
Confidence 45556677788999999832222221 222 34779999999999999997653 2 45554 22211 11
Q ss_pred CCCCcccccccc--ccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeE-EE-----Eee
Q 001176 804 NPSGKATANVAP--QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKV-MT-----MFM 875 (1132)
Q Consensus 804 ~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~-~~-----~~~ 875 (1132)
.+-....+...+ ..-......+-...++- ...+.+++..|-..-|++|+++++.+|.+..... .. .|.
T Consensus 103 ~~v~vRiaG~~v~~~~~~~~~~qleiiElPl----~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe 178 (215)
T PF14761_consen 103 SPVRVRIAGHRVTPSFNESSKDQLEIIELPL----SEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFE 178 (215)
T ss_pred CcEEEEEcccccccCCCCccccceEEEEecC----CCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEech
Confidence 111100000000 00000011111112322 5567888888877778888999999998865433 11 111
Q ss_pred -----CCCC-CeEEEEEeCCCCCeEEEEeCCCcEEEEEc
Q 001176 876 -----SPPP-AATFLAFHPQDNNIIAIGMEDSSVQIYNV 908 (1132)
Q Consensus 876 -----~~~~-~i~~l~~sp~~~~~lasg~~dg~v~iwd~ 908 (1132)
-|.+ ....++|.. .++|..+.. .+++..+
T Consensus 179 ~~l~~~~~~~~p~~v~ic~---~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 179 RSLIDHIDNFKPTQVAICE---GYIAVMSDL-EVLVLKL 213 (215)
T ss_pred hhhhheecCceEEEEEEEe---eEEEEecCC-EEEEEEE
Confidence 1111 245667754 577766543 6766654
No 491
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.23 E-value=1.3e+02 Score=37.41 Aligned_cols=108 Identities=18% Similarity=0.106 Sum_probs=67.4
Q ss_pred EEECCCCcEEEEEeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE--EeCCCcceecccC
Q 001176 977 VQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV--FDAETLRFRCRIG 1053 (1132)
Q Consensus 977 ~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~v--wd~~~~~~~~~~~ 1053 (1132)
.++.|...+++++-...+++||+ +.+.++...... -...|+++.+ .+.++++|...-.|.+ |+-+..+++.-..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~-~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKF-IPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhcc-CceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 45667777889999999999999 555544443321 2556777776 5667888876666655 4555444432222
Q ss_pred CCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1054 PSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1054 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
. .-..+|+++.+- |...++.|.+=|.+.+-++..
T Consensus 1016 -D---------~~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1016 -D---------PVPRHVTALELL--DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred -C---------CccceeeEEEEe--cCCceeeccccCcEEEEECCC
Confidence 1 112445555554 556788888778877766643
No 492
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.35 E-value=59 Score=40.20 Aligned_cols=249 Identities=10% Similarity=0.005 Sum_probs=113.7
Q ss_pred EEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEE
Q 001176 775 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 854 (1132)
Q Consensus 775 ~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~ 854 (1132)
.++..-|..+.+|+.+|.+..|.+........... .. ++ ......+ + ..+|..+...+.-.++.+
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~~--------~~-~~~~~~~----~-kk~i~~l~~~~~~~~ll~ 84 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-VT--------ET-VKFEKEF----S-KKPINKLLVCASLELLLI 84 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-hc--------ch-hHHhhhh----c-cchhHHHhhcchhcchhe
Confidence 34445677899999999999998764322111110 00 00 0000001 1 456666666666677777
Q ss_pred eeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEe--CC-CC--CeEEEEe-CCC-cEEEEEcccceeeeeeccccCCeeEE
Q 001176 855 ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFH--PQ-DN--NIIAIGM-EDS-SVQIYNVRVDEVKTKLKGHQNRITGL 927 (1132)
Q Consensus 855 ~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s--p~-~~--~~lasg~-~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l 927 (1132)
-+|+.|.++++.+.+... ...+...++..+.. +. .+ .+.++.. ... ....|+-.++-.+..--+-.....++
T Consensus 85 l~dsqi~~~~l~~~~~~~-~~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 163 (877)
T KOG2063|consen 85 LSDSQIAVHKLPELEPVP-SGTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKAR 163 (877)
T ss_pred ecCCcceeeecCcccccc-cccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhh
Confidence 778889998887665521 11111111111110 00 11 1122222 111 12223322222221111111122222
Q ss_pred EEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCce-ee
Q 001176 928 AFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS-RS 1006 (1132)
Q Consensus 928 ~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~-~~ 1006 (1132)
+| .|..+.++-.+....+|...++............ . ..-..++--.++..++.+.|+...+-|..|... +.
T Consensus 164 ~~--~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~-~----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~ 236 (877)
T KOG2063|consen 164 AW--CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDN-E----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRG 236 (877)
T ss_pred cc--cceeEEEeecceeEEEecCCCccccceeeecccc-c----cCCCeEEEecCCceEEEccCceEEEEecCCcccCCC
Confidence 22 2333443433344444544443211111111110 0 122345556677677778888777778765552 11
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeccc
Q 001176 1007 WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1052 (1132)
Q Consensus 1007 ~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~ 1052 (1132)
-..- +....++.+ +..++++-+ ++.|.||+..++.++.++
T Consensus 237 ~l~w---s~~P~~v~~--~~PYlIa~~-~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 237 TLVW---SEVPLSVVV--ESPYLIALL-DRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred ceEe---cccchhhcc--cCceEEEEc-cccEEEEeccCHHHhhcc
Confidence 0000 111112221 344665554 569999999999887776
No 493
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=82.14 E-value=15 Score=42.96 Aligned_cols=131 Identities=14% Similarity=0.019 Sum_probs=68.6
Q ss_pred EEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEec-------------CCcEEEEeC
Q 001176 977 VQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC-------------DGAIGVFDA 1043 (1132)
Q Consensus 977 ~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~-------------dg~i~vwd~ 1043 (1132)
+.+-++|.+++... ..+..+|..++.+..+....+...-=..+..-|+|.+|+.+.. .-.|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd- 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD- 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--
T ss_pred eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-
Confidence 56678888877644 8888888877766554332110000124667799999888872 12366667
Q ss_pred CCcceecccCCCccc-cccc---------------cCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccccCC
Q 001176 1044 ETLRFRCRIGPSAYI-PTYA---------------VSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGT 1107 (1132)
Q Consensus 1044 ~~~~~~~~~~~~~~~-~~~~---------------~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~~~ 1107 (1132)
.+|+.+..+.....+ +... ....-.++-++.+.+.++.+|+|+=.-..|...|..+++-.|.+.
T Consensus 231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 778777665544333 1111 112224566889988665555555445599999988999888776
Q ss_pred CC
Q 001176 1108 PS 1109 (1132)
Q Consensus 1108 ~~ 1109 (1132)
++
T Consensus 311 ~~ 312 (477)
T PF05935_consen 311 PP 312 (477)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 494
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.82 E-value=7.7 Score=39.61 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=47.8
Q ss_pred CCCeEEEEeCCCcEEEEEcccceeeee-------ec-------cccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCC
Q 001176 890 DNNIIAIGMEDSSVQIYNVRVDEVKTK-------LK-------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 890 ~~~~lasg~~dg~v~iwd~~~~~~~~~-------l~-------~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~ 952 (1132)
.+.+|++.+.+|.+++||+.+++.+.. +. .....|..+.++.+|.-+++-+ +|..+.|+.+-
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 677899999999999999998875432 22 3556788889998888777765 56788887764
No 495
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.63 E-value=6.6 Score=27.36 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=28.2
Q ss_pred eCCCEEEEee--CCeEEEEECCCCeEEEEeeCCCCCeEEEEE
Q 001176 847 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAF 886 (1132)
Q Consensus 847 ~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 886 (1132)
||+++|.++. +++|.++|..+++.+..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5788777776 68999999999988887775 233344444
No 496
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.85 E-value=7.8 Score=37.96 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=26.1
Q ss_pred CCeeEEEEcCCC------CEEEEEcCCCcEEEEECCC
Q 001176 922 NRITGLAFSPTL------NALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 922 ~~V~~l~~spdg------~~l~s~~~D~~i~iwd~~~ 952 (1132)
..|.+++|||.| -.||....++.|.+|.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999965 4788999999999998764
No 497
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=80.51 E-value=28 Score=35.98 Aligned_cols=145 Identities=13% Similarity=0.130 Sum_probs=79.2
Q ss_pred EEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC----Cceeeeec-cccCCceEEEEEeC
Q 001176 521 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAIKRTYS-GFRKRSLGVVQFDT 595 (1132)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~~~~~~~-~~~~~~v~~~~~~~ 595 (1132)
.+||+.+.+.............+-++-+||++|.+++. .++...+++++... ......-. -......-....-+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 45777765544322223334444567899999998874 44667799998654 11111100 01111344566678
Q ss_pred CCCEEEEEEcCC-eEEEEECCC-Ce-eEEE--EeC---CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeee
Q 001176 596 TRNRFLAAGDEF-QIKFWDMDN-MN-MLTT--VDA---DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 667 (1132)
Q Consensus 596 ~~~~l~~~~~dg-~i~iwd~~~-~~-~~~~--~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 667 (1132)
||+.++.||... ...+|.... .. .... +.. .....-=..+...|+|++++.+..+. .+||..++ ..++.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n-~v~~~ 204 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN-TVVRT 204 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC-eEEee
Confidence 999999988654 344555422 11 1111 110 00111123566789999998887653 46687776 44444
Q ss_pred cc
Q 001176 668 LE 669 (1132)
Q Consensus 668 ~~ 669 (1132)
+.
T Consensus 205 lP 206 (243)
T PF07250_consen 205 LP 206 (243)
T ss_pred CC
Confidence 43
No 498
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=80.43 E-value=97 Score=34.06 Aligned_cols=110 Identities=9% Similarity=-0.011 Sum_probs=52.6
Q ss_pred cEEEEEecCC-----eEEEEEcCCCCce---EEecCCCCeE-EEEEEcCCCCEEEEEec-CCCCCCeEEEEeCCCCceee
Q 001176 509 QFIFSTAIDG-----KIKAWLYDYLGSR---VDYDAPGNWC-TMMAYSADGTRLFSCGT-SKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 509 ~~l~s~s~dg-----~i~~wd~~~~~~~---~~~~~~~~~v-~~~~~s~~~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~ 578 (1132)
.+++.|+.++ .+..+|+.+.... ..+..-.... ...+..-+++..+.++. +......+..||+.+.+...
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~ 153 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFE 153 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeE
Confidence 5666676543 4666777665431 1111111111 11112234555566553 11123468899988765432
Q ss_pred e--eccccCCceEEEEEeCCCCEEEEEEcCC----eEEEEECCCCeeE
Q 001176 579 T--YSGFRKRSLGVVQFDTTRNRFLAAGDEF----QIKFWDMDNMNML 620 (1132)
Q Consensus 579 ~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~ 620 (1132)
. +.... .....+...++...+.||.++ .+.+||..+.+..
T Consensus 154 ~~~~p~~~--r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 154 LPDFPGEP--RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCCCCCCC--CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 2 22111 112222334566666677553 3568888876543
No 499
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.95 E-value=62 Score=38.46 Aligned_cols=256 Identities=6% Similarity=0.031 Sum_probs=0.0
Q ss_pred CCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEE------
Q 001176 835 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN------ 907 (1132)
Q Consensus 835 h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd------ 907 (1132)
| -..++.++|.-++.-++..- |-+ ..-..+.....-...|.+.+||. |.+.++....+..|-+++
T Consensus 75 h-f~~~~~~~f~~~~gDii~~~~dp~------p~e~~~eivG~v~nGIvaa~wS~-DE~~~cvvt~~r~il~~~k~fd~i 146 (1243)
T COG5290 75 H-FHVLTFEYFLIDEGDIIHLVNDPT------PAELEMEIVGKVSNGIVAASWSA-DEKTWCVVTSTREILLFDKYFDPI 146 (1243)
T ss_pred h-hhhhheeeEEecCCcEEEEEcCCC------cccchhhhhccccCceEEEeecc-CCceEEEEEcCceEEEEecccccc
Q ss_pred ---------------------------------------------cccceeeeeeccccCCeeEEEEcCCCCEEEEEcCC
Q 001176 908 ---------------------------------------------VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 942 (1132)
Q Consensus 908 ---------------------------------------------~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D 942 (1132)
++.|.+.....+. .-+.|--|..+.+.+...
T Consensus 147 se~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k----~~i~wrgD~~y~~v~r~E 222 (1243)
T COG5290 147 SEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNK----KIIFWRGDTEYNLVGRSE 222 (1243)
T ss_pred chhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCc----eEEEEccCcceeeecchh
Q ss_pred ----CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCe-----EEEEeCCCCceeecCCCCC
Q 001176 943 ----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQ-----ISVYDSKLECSRSWSPKDA 1012 (1132)
Q Consensus 943 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~-----v~vwd~~~~~~~~~~~~~~ 1012 (1132)
..+++|.-...-.....+..... ..+.|-|.|..+++ +.||. |.++.-++-....+....+
T Consensus 223 e~prra~rvysreg~lds~sep~~g~e---------~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~ 293 (1243)
T COG5290 223 ERPRRAFRVYSREGQLDSASEPVTGME---------HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVG 293 (1243)
T ss_pred cccccceeeeccccccccccCCcccch---------hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCC
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcE
Q 001176 1013 LPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAV 1092 (1132)
Q Consensus 1013 h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i 1092 (1132)
....+...+|.-....+|.+. .+.|.+|-..+-.-.-... -.-..+.-+.|+|...+.+.-.+...-.
T Consensus 294 ~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNyhWYLK~e-----------~~ip~~s~vkwhpe~~nTl~f~d~~~I~ 361 (1243)
T COG5290 294 CDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNYHWYLKVE-----------RQIPGISYVKWHPEEKNTLLFRDGERIL 361 (1243)
T ss_pred chhhhhhhhhhHHHHHHHHhh-cceEEEEEccceEEEEEEe-----------ecCCCcceeeeccccCcEEEEecCCeEE
Q ss_pred EEEecCCCcccccCCCCCCCCCCC------------CCCCCCCC
Q 001176 1093 HVVEPSDAELKWGGTPSQDNGPLP------------SNSSNPPL 1124 (1132)
Q Consensus 1093 ~vW~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 1124 (1132)
++.=-..-....+. -|+|||-.+ +..-.|||
T Consensus 362 ~V~f~~k~~~~~s~-~p~d~g~~~ViDGs~~l~Tplsl~n~PPP 404 (1243)
T COG5290 362 RVFFSEKKTHHGSE-YPFDNGTSYVIDGSYMLYTPLSLKNLPPP 404 (1243)
T ss_pred EEEeehhhhcCCcc-cCccCCceEEEcCceEEecchhhhcCCCC
No 500
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.94 E-value=33 Score=43.81 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=44.0
Q ss_pred CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 001176 537 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 537 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1132)
+...+.+..+....+.++... .+.+..|+.........+..... ..+.++..++++..||.+.+||...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSS 265 (993)
T ss_pred cccccceeeeecCCCcceeee-----eeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCC
Confidence 334555555555444444432 34466666544433333332222 1177889999999999999999998
Q ss_pred Cee
Q 001176 617 MNM 619 (1132)
Q Consensus 617 ~~~ 619 (1132)
++.
T Consensus 266 g~~ 268 (993)
T KOG1983|consen 266 GKL 268 (993)
T ss_pred Cce
Confidence 865
Done!