Query 001176
Match_columns 1132
No_of_seqs 847 out of 4907
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 14:57:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 1.4E-68 4.9E-73 650.5 77.7 566 337-1096 9-577 (577)
2 1nr0_A Actin interacting prote 100.0 1.2E-65 4E-70 624.9 73.4 575 342-1098 17-610 (611)
3 1nr0_A Actin interacting prote 100.0 2.3E-64 8E-69 613.5 75.0 567 309-1044 18-610 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 5.3E-64 1.8E-68 610.3 75.6 555 307-1042 14-577 (577)
5 3sfz_A APAF-1, apoptotic pepti 100.0 2.9E-63 9.9E-68 659.7 66.7 615 339-1098 610-1248(1249)
6 1pgu_A Actin interacting prote 100.0 6.8E-59 2.3E-63 570.5 69.7 559 342-1099 17-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 6.9E-58 2.4E-62 608.0 67.6 570 400-1104 610-1212(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 2.4E-55 8.3E-60 552.2 70.9 602 337-1056 11-794 (902)
9 1pgu_A Actin interacting prote 100.0 7.2E-55 2.5E-59 534.7 63.7 556 308-1045 17-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 1E-54 3.6E-59 546.5 58.1 587 401-1104 13-788 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 2.1E-47 7.1E-52 484.7 60.7 566 336-1101 5-603 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 2E-45 6.8E-50 466.5 51.7 466 401-1096 9-502 (814)
13 1vyh_C Platelet-activating fac 100.0 2.8E-44 9.5E-49 413.9 41.3 283 342-658 107-409 (410)
14 1got_B GT-beta; complex (GTP-b 100.0 4.1E-39 1.4E-43 361.1 45.2 294 333-657 44-340 (340)
15 3ow8_A WD repeat-containing pr 100.0 1.6E-39 5.6E-44 360.2 40.8 293 334-658 22-319 (321)
16 2pbi_B Guanine nucleotide-bind 100.0 5E-39 1.7E-43 362.0 42.7 295 335-657 55-354 (354)
17 2ynn_A Coatomer subunit beta'; 100.0 1.6E-38 5.5E-43 350.0 41.0 292 335-660 4-302 (304)
18 3iz6_a 40S ribosomal protein R 100.0 4.3E-39 1.5E-43 366.9 35.1 305 331-661 53-376 (380)
19 1vyh_C Platelet-activating fac 100.0 1.9E-38 6.5E-43 365.2 40.6 247 401-661 104-370 (410)
20 3frx_A Guanine nucleotide-bind 100.0 3.2E-38 1.1E-42 350.2 40.8 301 334-661 7-318 (319)
21 3ow8_A WD repeat-containing pr 100.0 5.6E-38 1.9E-42 347.9 42.0 288 401-798 28-319 (321)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.8E-38 3E-42 350.8 41.7 303 334-662 5-337 (345)
23 1got_B GT-beta; complex (GTP-b 100.0 1.7E-37 5.7E-42 348.0 43.9 248 401-661 51-302 (340)
24 4gqb_B Methylosome protein 50; 100.0 5.7E-38 2E-42 350.1 39.1 297 342-661 29-332 (344)
25 4g56_B MGC81050 protein; prote 100.0 3E-38 1E-42 355.8 36.9 292 342-661 41-344 (357)
26 1r5m_A SIR4-interacting protei 100.0 4.5E-37 1.5E-41 357.5 42.8 305 337-662 39-363 (425)
27 4g56_B MGC81050 protein; prote 100.0 6.2E-38 2.1E-42 353.2 34.1 318 734-1101 18-345 (357)
28 4gqb_B Methylosome protein 50; 100.0 1.2E-37 4.2E-42 347.4 34.2 294 768-1101 29-333 (344)
29 4ery_A WD repeat-containing pr 100.0 2.5E-36 8.5E-41 334.7 44.3 292 335-659 14-311 (312)
30 2ynn_A Coatomer subunit beta'; 100.0 1E-36 3.5E-41 335.5 40.9 254 401-668 9-266 (304)
31 1r5m_A SIR4-interacting protei 100.0 1.4E-36 4.9E-41 353.3 43.9 342 427-951 25-424 (425)
32 2pbi_B Guanine nucleotide-bind 100.0 1.9E-36 6.6E-41 340.8 42.1 249 401-661 60-316 (354)
33 1erj_A Transcriptional repress 100.0 1.6E-36 5.5E-41 347.4 41.4 309 335-660 56-389 (393)
34 2hes_X YDR267CP; beta-propelle 100.0 2.2E-36 7.6E-41 337.1 41.2 298 334-660 4-328 (330)
35 3frx_A Guanine nucleotide-bind 100.0 6E-36 2.1E-40 331.8 44.1 247 401-661 13-268 (319)
36 2pm9_A Protein WEB1, protein t 100.0 1.6E-37 5.4E-42 360.3 31.8 297 341-661 10-338 (416)
37 3iz6_a 40S ribosomal protein R 100.0 3.8E-37 1.3E-41 350.8 33.3 294 401-799 62-374 (380)
38 2xzm_R RACK1; ribosome, transl 100.0 4E-36 1.4E-40 337.4 41.2 300 335-661 12-341 (343)
39 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-36 3.9E-41 341.8 36.4 305 768-1106 14-342 (345)
40 1k32_A Tricorn protease; prote 100.0 3.1E-35 1.1E-39 379.9 54.0 553 342-1101 13-639 (1045)
41 4aow_A Guanine nucleotide-bind 100.0 1.2E-35 4E-40 334.1 42.2 304 333-662 27-339 (340)
42 4ery_A WD repeat-containing pr 100.0 2.9E-35 9.8E-40 326.1 43.9 256 401-668 19-275 (312)
43 1gxr_A ESG1, transducin-like e 100.0 3.9E-35 1.3E-39 329.3 45.1 319 309-658 9-335 (337)
44 1gxr_A ESG1, transducin-like e 100.0 8.7E-36 3E-40 334.6 39.4 286 342-661 8-297 (337)
45 3vl1_A 26S proteasome regulato 100.0 1.9E-35 6.4E-40 343.2 37.5 345 406-952 57-419 (420)
46 2xzm_R RACK1; ribosome, transl 100.0 1.4E-34 4.9E-39 324.7 43.2 205 443-660 14-244 (343)
47 3gre_A Serine/threonine-protei 100.0 2.9E-36 9.8E-41 351.9 30.2 357 402-949 60-437 (437)
48 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-36 7.8E-41 353.9 29.3 273 333-659 123-427 (524)
49 3vl1_A 26S proteasome regulato 100.0 1E-35 3.4E-40 345.5 33.4 284 344-661 57-366 (420)
50 2pm9_A Protein WEB1, protein t 100.0 1.6E-36 5.5E-41 351.8 26.4 327 308-661 11-415 (416)
51 2hes_X YDR267CP; beta-propelle 100.0 3E-34 1E-38 319.9 41.4 305 573-1045 3-328 (330)
52 3dm0_A Maltose-binding peripla 100.0 1.5E-34 5.2E-39 357.6 41.8 298 336-659 374-692 (694)
53 2j04_B YDR362CP, TAU91; beta p 100.0 4E-36 1.4E-40 351.9 25.4 344 404-952 132-517 (524)
54 3ei3_B DNA damage-binding prot 100.0 1.8E-34 6.3E-39 330.1 38.6 297 333-660 62-382 (383)
55 1erj_A Transcriptional repress 100.0 7E-34 2.4E-38 325.4 42.9 251 403-670 62-350 (393)
56 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.7E-33 9.2E-38 327.3 46.8 319 401-910 114-442 (445)
57 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.2E-33 7.5E-38 328.0 45.4 317 445-952 113-442 (445)
58 4aow_A Guanine nucleotide-bind 100.0 3.5E-33 1.2E-37 313.8 45.3 312 422-912 9-339 (340)
59 1k32_A Tricorn protease; prote 100.0 4E-33 1.4E-37 360.3 50.3 530 328-1047 37-639 (1045)
60 3v7d_B Cell division control p 100.0 3.9E-33 1.3E-37 328.2 45.7 320 401-908 117-461 (464)
61 1sq9_A Antiviral protein SKI8; 100.0 4.7E-34 1.6E-38 328.6 37.1 297 336-661 8-396 (397)
62 3zwl_B Eukaryotic translation 100.0 2.2E-33 7.5E-38 319.4 42.1 287 339-661 27-347 (369)
63 3odt_A Protein DOA1; ubiquitin 100.0 2.5E-33 8.6E-38 310.8 40.2 289 333-661 7-297 (313)
64 3v7d_B Cell division control p 100.0 1.6E-32 5.6E-37 322.9 47.7 283 336-661 113-422 (464)
65 1k8k_C P40, ARP2/3 complex 41 100.0 1E-33 3.5E-38 322.7 35.1 293 342-666 7-367 (372)
66 3i2n_A WD repeat-containing pr 100.0 1.1E-33 3.8E-38 320.3 34.1 293 338-661 12-354 (357)
67 3k26_A Polycomb protein EED; W 100.0 9.3E-34 3.2E-38 322.2 33.4 290 342-659 17-365 (366)
68 4e54_B DNA damage-binding prot 100.0 4.6E-34 1.6E-38 332.0 31.2 296 338-661 113-431 (435)
69 3gre_A Serine/threonine-protei 100.0 8.7E-34 3E-38 330.9 33.0 315 316-657 34-437 (437)
70 3ei3_B DNA damage-binding prot 100.0 5.6E-33 1.9E-37 317.7 38.1 315 568-1099 57-382 (383)
71 4h5i_A Guanine nucleotide-exch 100.0 3.1E-33 1.1E-37 315.7 33.6 301 342-661 13-344 (365)
72 3zwl_B Eukaryotic translation 100.0 7.1E-32 2.4E-36 306.9 42.6 302 400-801 27-347 (369)
73 3dwl_C Actin-related protein 2 100.0 3.9E-34 1.3E-38 326.7 23.7 286 342-658 10-377 (377)
74 1sq9_A Antiviral protein SKI8; 100.0 1.9E-32 6.4E-37 315.3 37.4 297 487-953 9-396 (397)
75 4a11_B DNA excision repair pro 100.0 8.9E-33 3E-37 319.3 33.6 349 564-1100 23-406 (408)
76 3dm0_A Maltose-binding peripla 100.0 3.7E-32 1.3E-36 336.2 41.3 256 400-669 377-640 (694)
77 2pm7_B Protein transport prote 100.0 2.6E-32 9E-37 299.2 34.8 252 401-660 5-285 (297)
78 4aez_A CDC20, WD repeat-contai 100.0 4.6E-32 1.6E-36 311.7 38.4 290 342-664 90-384 (401)
79 2j04_A TAU60, YPL007P, hypothe 100.0 3.1E-33 1.1E-37 315.6 27.2 261 342-659 14-296 (588)
80 4e54_B DNA damage-binding prot 100.0 1.2E-32 4.1E-37 320.1 32.7 300 578-1048 113-433 (435)
81 4gga_A P55CDC, cell division c 100.0 1.3E-31 4.3E-36 310.1 40.3 282 345-661 107-396 (420)
82 3k26_A Polycomb protein EED; W 100.0 3.4E-32 1.2E-36 309.2 34.9 249 401-661 14-319 (366)
83 4a11_B DNA excision repair pro 100.0 1.2E-31 4E-36 309.9 39.2 308 334-661 33-366 (408)
84 2pm7_B Protein transport prote 100.0 7.2E-32 2.5E-36 295.7 34.9 249 339-615 4-284 (297)
85 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-30 3.6E-35 289.7 42.8 287 484-955 8-299 (313)
86 2j04_A TAU60, YPL007P, hypothe 100.0 2.4E-33 8.1E-38 316.6 21.4 222 404-661 14-255 (588)
87 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-31 8.1E-36 303.1 38.1 247 401-660 4-274 (372)
88 4h5i_A Guanine nucleotide-exch 100.0 2.5E-32 8.7E-37 308.2 27.6 292 770-1099 15-343 (365)
89 3dw8_B Serine/threonine-protei 100.0 1.7E-31 5.8E-36 312.8 35.7 300 340-658 25-444 (447)
90 3i2n_A WD repeat-containing pr 100.0 9.4E-32 3.2E-36 304.4 32.2 298 533-954 13-355 (357)
91 4ggc_A P55CDC, cell division c 100.0 1.9E-30 6.4E-35 288.4 41.3 281 346-661 28-316 (318)
92 3dwl_C Actin-related protein 2 100.0 2.1E-32 7.2E-37 312.3 25.0 243 403-659 9-280 (377)
93 3bg1_A Protein SEC13 homolog; 100.0 7.7E-32 2.6E-36 298.3 26.1 251 400-660 8-293 (316)
94 1p22_A F-BOX/WD-repeat protein 100.0 8.5E-31 2.9E-35 304.8 36.0 272 342-661 132-415 (435)
95 1yfq_A Cell cycle arrest prote 100.0 4.5E-31 1.6E-35 296.8 32.4 279 342-657 10-321 (342)
96 2aq5_A Coronin-1A; WD40 repeat 100.0 6.4E-31 2.2E-35 302.5 32.5 297 344-661 35-343 (402)
97 3mmy_A MRNA export factor; mRN 100.0 1.1E-30 3.8E-35 296.9 34.0 296 329-660 24-346 (368)
98 4gga_A P55CDC, cell division c 100.0 4.8E-30 1.6E-34 296.8 39.7 294 759-1101 95-397 (420)
99 3bg1_A Protein SEC13 homolog; 100.0 3.7E-31 1.3E-35 292.8 28.1 251 835-1099 12-293 (316)
100 4aez_A CDC20, WD repeat-contai 100.0 4.9E-30 1.7E-34 294.8 37.3 241 403-661 89-337 (401)
101 4ggc_A P55CDC, cell division c 100.0 1.7E-29 5.9E-34 280.6 40.0 283 771-1101 27-317 (318)
102 3dw8_B Serine/threonine-protei 100.0 9.4E-30 3.2E-34 297.9 37.6 250 403-662 26-375 (447)
103 3f3f_A Nucleoporin SEH1; struc 100.0 8E-30 2.7E-34 287.4 34.7 253 400-661 6-338 (351)
104 1p22_A F-BOX/WD-repeat protein 100.0 3.5E-29 1.2E-33 291.2 37.1 234 402-661 130-366 (435)
105 1yfq_A Cell cycle arrest prote 100.0 3.6E-29 1.2E-33 281.2 35.7 254 401-668 7-289 (342)
106 3jrp_A Fusion protein of prote 100.0 1.5E-29 5.1E-34 289.0 32.3 257 335-619 2-290 (379)
107 3jrp_A Fusion protein of prote 100.0 1.9E-29 6.6E-34 288.0 33.1 253 401-661 7-288 (379)
108 3f3f_A Nucleoporin SEH1; struc 100.0 2E-29 6.8E-34 284.1 32.5 259 342-623 10-344 (351)
109 3mmy_A MRNA export factor; mRN 100.0 8.6E-29 2.9E-33 281.3 35.3 298 479-952 24-346 (368)
110 2aq5_A Coronin-1A; WD40 repeat 100.0 2.8E-29 9.5E-34 288.9 30.1 249 406-662 35-301 (402)
111 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.6E-28 9E-33 285.0 36.4 302 344-660 5-391 (450)
112 2w18_A PALB2, fancn, partner a 100.0 2.5E-27 8.5E-32 250.9 38.3 294 452-950 41-355 (356)
113 1l0q_A Surface layer protein; 100.0 4E-27 1.4E-31 270.1 43.4 278 357-672 3-286 (391)
114 3bws_A Protein LP49; two-domai 100.0 1.3E-27 4.3E-32 278.4 39.1 317 426-910 98-432 (433)
115 3vu4_A KMHSV2; beta-propeller 100.0 2.1E-28 7.1E-33 275.3 30.4 283 335-661 10-337 (355)
116 3bws_A Protein LP49; two-domai 100.0 1.9E-27 6.4E-32 277.0 38.5 304 325-659 102-431 (433)
117 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-27 3.6E-32 269.6 35.2 314 568-1048 3-339 (355)
118 1l0q_A Surface layer protein; 100.0 1.2E-26 4.1E-31 266.1 44.2 328 466-988 4-364 (391)
119 2xyi_A Probable histone-bindin 100.0 4.4E-28 1.5E-32 280.9 32.2 266 336-617 121-411 (430)
120 3jro_A Fusion protein of prote 100.0 5.6E-29 1.9E-33 308.9 25.0 255 338-618 3-287 (753)
121 2xyi_A Probable histone-bindin 100.0 1.5E-27 5.2E-32 276.5 35.0 252 401-661 124-411 (430)
122 3jro_A Fusion protein of prote 100.0 6.1E-28 2.1E-32 299.7 28.4 253 401-661 5-286 (753)
123 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-27 4.2E-32 268.3 27.5 280 457-952 43-333 (343)
124 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.5E-26 5.1E-31 270.1 36.7 242 406-658 5-337 (450)
125 4gq1_A NUP37; propeller, trans 100.0 1.6E-27 5.4E-32 272.3 27.1 303 344-658 16-387 (393)
126 3lrv_A PRE-mRNA-splicing facto 100.0 1.6E-27 5.4E-32 267.4 26.3 268 350-660 43-333 (343)
127 2w18_A PALB2, fancn, partner a 100.0 2.3E-26 7.8E-31 243.5 31.0 296 334-658 25-355 (356)
128 1nir_A Nitrite reductase; hemo 100.0 2.6E-25 8.8E-30 262.9 40.0 324 457-956 144-518 (543)
129 1nir_A Nitrite reductase; hemo 99.9 9.1E-25 3.1E-29 258.2 41.1 337 412-920 144-524 (543)
130 4gq1_A NUP37; propeller, trans 99.9 1.9E-26 6.6E-31 263.3 23.7 247 342-614 88-387 (393)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 4E-24 1.4E-28 245.3 30.4 284 344-661 63-388 (415)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 1E-23 3.6E-28 241.9 30.9 306 450-934 62-410 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.9 3.1E-23 1.1E-27 259.2 35.5 299 343-660 36-413 (741)
134 2ecf_A Dipeptidyl peptidase IV 99.9 8.9E-23 3E-27 255.1 35.1 328 450-953 36-460 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 3.8E-23 1.3E-27 257.7 27.4 288 344-660 17-393 (723)
136 3u4y_A Uncharacterized protein 99.9 2.2E-21 7.6E-26 216.4 37.0 281 349-661 3-305 (331)
137 1xfd_A DIP, dipeptidyl aminope 99.9 3.8E-22 1.3E-26 248.7 32.7 382 540-1049 18-447 (723)
138 3vgz_A Uncharacterized protein 99.9 1.1E-20 3.7E-25 212.9 36.6 279 337-651 34-335 (353)
139 2z3z_A Dipeptidyl aminopeptida 99.9 2.2E-21 7.5E-26 240.9 33.0 358 453-950 28-474 (706)
140 2z3z_A Dipeptidyl aminopeptida 99.9 7.6E-21 2.6E-25 236.0 35.9 237 408-659 28-341 (706)
141 1ri6_A Putative isomerase YBHE 99.9 5.9E-20 2E-24 205.9 36.5 274 356-659 5-307 (343)
142 1ri6_A Putative isomerase YBHE 99.9 1.6E-20 5.6E-25 210.5 29.1 241 837-1098 37-307 (343)
143 2ojh_A Uncharacterized protein 99.9 9.9E-21 3.4E-25 207.1 26.2 257 361-651 17-293 (297)
144 3u4y_A Uncharacterized protein 99.9 1.9E-19 6.5E-24 200.6 36.0 197 456-661 3-208 (331)
145 1pby_B Quinohemoprotein amine 99.9 1.4E-19 4.7E-24 202.3 34.2 299 509-921 2-321 (337)
146 1pby_B Quinohemoprotein amine 99.9 1.1E-19 3.8E-24 203.1 30.0 276 358-670 3-319 (337)
147 3vgz_A Uncharacterized protein 99.9 4.6E-19 1.6E-23 199.6 33.7 273 311-607 42-335 (353)
148 3hfq_A Uncharacterized protein 99.9 1.9E-19 6.4E-24 202.1 30.2 247 837-1101 39-321 (347)
149 3o4h_A Acylamino-acid-releasin 99.8 7.5E-20 2.6E-24 221.1 27.9 272 343-659 21-314 (582)
150 2ojh_A Uncharacterized protein 99.8 2E-19 6.8E-24 196.7 26.8 253 325-607 23-293 (297)
151 1z68_A Fibroblast activation p 99.8 1.9E-19 6.7E-24 223.7 28.4 285 772-1101 62-445 (719)
152 2oit_A Nucleoporin 214KDA; NH2 99.8 2.5E-18 8.6E-23 197.5 33.7 314 770-1099 37-405 (434)
153 1z68_A Fibroblast activation p 99.8 9.1E-20 3.1E-24 226.7 23.3 318 313-661 19-444 (719)
154 3hfq_A Uncharacterized protein 99.8 2.3E-18 8E-23 193.2 32.4 274 321-620 15-323 (347)
155 2oit_A Nucleoporin 214KDA; NH2 99.8 8.3E-19 2.8E-23 201.5 29.1 260 343-614 36-331 (434)
156 3o4h_A Acylamino-acid-releasin 99.8 6.8E-19 2.3E-23 212.7 26.4 237 404-658 20-274 (582)
157 3pe7_A Oligogalacturonate lyas 99.8 4.5E-18 1.5E-22 194.3 30.9 301 331-658 17-380 (388)
158 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-17 3.8E-22 207.6 36.2 379 541-1052 19-456 (740)
159 4a5s_A Dipeptidyl peptidase 4 99.8 8.4E-18 2.9E-22 208.6 33.8 275 344-661 17-354 (740)
160 1jmx_B Amine dehydrogenase; ox 99.8 2.7E-18 9.2E-23 192.9 26.5 240 842-1105 4-331 (349)
161 1jmx_B Amine dehydrogenase; ox 99.8 6.2E-18 2.1E-22 189.9 28.6 281 348-669 4-333 (349)
162 3scy_A Hypothetical bacterial 99.8 6.2E-17 2.1E-21 182.6 36.6 298 549-951 12-336 (361)
163 3scy_A Hypothetical bacterial 99.8 7.7E-17 2.6E-21 181.9 34.8 272 358-659 15-336 (361)
164 3pe7_A Oligogalacturonate lyas 99.8 2.8E-17 9.7E-22 187.6 28.8 254 401-661 26-330 (388)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.7E-17 5.9E-22 187.1 25.6 251 837-1100 39-342 (365)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.6E-16 5.4E-21 179.2 31.1 247 405-661 39-342 (365)
167 2oiz_A Aromatic amine dehydrog 99.8 7.5E-16 2.6E-20 172.5 35.4 312 507-934 14-360 (361)
168 2oiz_A Aromatic amine dehydrog 99.7 8.1E-16 2.8E-20 172.2 32.2 220 839-1081 109-360 (361)
169 3c5m_A Oligogalacturonate lyas 99.7 1.9E-16 6.3E-21 181.4 27.3 297 332-658 18-380 (396)
170 3c5m_A Oligogalacturonate lyas 99.7 5.6E-16 1.9E-20 177.4 23.3 318 523-999 15-380 (396)
171 2gop_A Trilobed protease; beta 99.7 1E-14 3.6E-19 163.3 30.1 264 343-659 14-330 (347)
172 1qks_A Cytochrome CD1 nitrite 99.7 3.6E-13 1.2E-17 158.1 43.0 190 464-661 167-374 (567)
173 1qks_A Cytochrome CD1 nitrite 99.7 2.9E-13 9.9E-18 158.9 40.8 274 357-661 168-478 (567)
174 1q7f_A NHL, brain tumor CG1071 99.7 2.2E-14 7.7E-19 155.5 29.3 243 837-1101 29-282 (286)
175 3azo_A Aminopeptidase; POP fam 99.7 9.1E-15 3.1E-19 179.7 29.0 285 342-661 22-370 (662)
176 3azo_A Aminopeptidase; POP fam 99.7 1.4E-14 4.8E-19 178.0 29.9 251 399-658 17-321 (662)
177 3fvz_A Peptidyl-glycine alpha- 99.7 1.4E-14 4.7E-19 160.5 26.6 251 837-1099 23-322 (329)
178 3fvz_A Peptidyl-glycine alpha- 99.7 3.3E-14 1.1E-18 157.3 29.1 245 344-616 24-322 (329)
179 4a2l_A BT_4663, two-component 99.6 3.6E-10 1.2E-14 141.2 68.1 535 344-1044 88-658 (795)
180 1q7f_A NHL, brain tumor CG1071 99.6 1.9E-13 6.6E-18 148.1 32.3 245 403-661 27-281 (286)
181 4a2l_A BT_4663, two-component 99.6 1.1E-09 3.8E-14 136.8 70.0 587 343-1099 42-659 (795)
182 2xdw_A Prolyl endopeptidase; a 99.6 2.5E-13 8.4E-18 167.7 34.4 250 402-662 121-416 (710)
183 2dg1_A DRP35, lactonase; beta 99.6 2.3E-13 7.9E-18 151.3 30.5 271 344-651 6-301 (333)
184 2dg1_A DRP35, lactonase; beta 99.6 3.7E-13 1.3E-17 149.6 29.1 273 770-1089 6-300 (333)
185 2xdw_A Prolyl endopeptidase; a 99.6 3.9E-13 1.3E-17 165.9 29.3 247 344-618 125-416 (710)
186 2gop_A Trilobed protease; beta 99.6 2E-12 6.7E-17 144.7 32.4 256 517-924 42-343 (347)
187 2bkl_A Prolyl endopeptidase; m 99.6 2.1E-13 7.2E-18 167.7 26.7 247 402-662 117-399 (695)
188 3e5z_A Putative gluconolactona 99.6 8.3E-13 2.8E-17 143.9 28.4 241 342-619 26-289 (296)
189 3dsm_A Uncharacterized protein 99.6 8.3E-13 2.8E-17 145.8 27.9 278 364-669 15-309 (328)
190 2z2n_A Virginiamycin B lyase; 99.6 2.1E-11 7.2E-16 132.9 38.9 282 342-661 13-296 (299)
191 3v9f_A Two-component system se 99.6 2.5E-08 8.5E-13 124.3 71.2 595 343-1100 18-657 (781)
192 3no2_A Uncharacterized protein 99.5 5.7E-13 2E-17 142.2 24.9 252 848-1117 4-270 (276)
193 3e5z_A Putative gluconolactona 99.5 1.5E-12 5.3E-17 141.7 28.8 237 402-661 24-287 (296)
194 3dsm_A Uncharacterized protein 99.5 1.6E-12 5.6E-17 143.4 28.2 240 838-1104 44-306 (328)
195 1rwi_B Serine/threonine-protei 99.5 2.2E-12 7.6E-17 138.4 28.1 240 839-1102 25-267 (270)
196 3v9f_A Two-component system se 99.5 8.5E-09 2.9E-13 128.5 64.3 541 344-1045 66-656 (781)
197 2z2n_A Virginiamycin B lyase; 99.5 3.6E-11 1.2E-15 131.1 37.4 281 768-1101 13-297 (299)
198 2bkl_A Prolyl endopeptidase; m 99.5 7.6E-13 2.6E-17 162.8 25.2 248 342-619 119-400 (695)
199 3no2_A Uncharacterized protein 99.5 4.3E-12 1.5E-16 135.4 27.7 243 358-636 7-272 (276)
200 1rwi_B Serine/threonine-protei 99.5 4.2E-12 1.4E-16 136.2 27.5 240 345-618 25-266 (270)
201 2mad_H Methylamine dehydrogena 99.5 5.5E-11 1.9E-15 132.7 37.1 279 350-667 27-356 (373)
202 3sjl_D Methylamine dehydrogena 99.5 1.5E-11 5.2E-16 134.5 31.5 286 544-957 38-368 (386)
203 3sjl_D Methylamine dehydrogena 99.5 6.5E-12 2.2E-16 137.4 27.0 283 349-669 38-371 (386)
204 1yr2_A Prolyl oligopeptidase; 99.5 3.4E-12 1.2E-16 158.1 28.0 247 403-661 160-442 (741)
205 2qc5_A Streptogramin B lactona 99.5 2E-10 6.8E-15 125.1 39.0 278 342-658 18-298 (300)
206 2mad_H Methylamine dehydrogena 99.5 4.1E-11 1.4E-15 133.8 32.7 239 842-1103 70-354 (373)
207 2qc5_A Streptogramin B lactona 99.4 5.8E-10 2E-14 121.4 36.3 278 768-1098 18-299 (300)
208 3c75_H MADH, methylamine dehyd 99.4 7E-11 2.4E-15 132.0 28.0 204 841-1052 180-409 (426)
209 1yr2_A Prolyl oligopeptidase; 99.4 2.9E-11 1E-15 149.7 27.8 246 344-619 163-444 (741)
210 3c75_H MADH, methylamine dehyd 99.4 7.4E-11 2.5E-15 131.8 26.4 279 353-668 82-409 (426)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.8E-10 6.2E-15 126.5 28.4 243 405-660 17-299 (314)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1.8E-10 6E-15 126.6 27.0 246 344-616 18-299 (314)
213 3hrp_A Uncharacterized protein 99.3 6.4E-10 2.2E-14 126.0 30.0 240 344-614 131-408 (409)
214 3hrp_A Uncharacterized protein 99.3 5.6E-10 1.9E-14 126.5 28.8 252 838-1097 131-408 (409)
215 3iuj_A Prolyl endopeptidase; h 99.3 4.5E-10 1.5E-14 137.5 28.6 251 342-620 127-409 (693)
216 3g4e_A Regucalcin; six bladed 99.3 9.7E-10 3.3E-14 119.3 27.4 229 344-605 13-261 (297)
217 4a0p_A LRP6, LRP-6, low-densit 99.3 1.1E-05 3.8E-10 95.8 64.4 532 419-1052 8-556 (628)
218 3g4e_A Regucalcin; six bladed 99.3 2.5E-09 8.7E-14 115.9 29.7 227 407-650 14-262 (297)
219 2qe8_A Uncharacterized protein 99.3 3.3E-10 1.1E-14 125.8 23.1 272 344-652 17-313 (343)
220 3iuj_A Prolyl endopeptidase; h 99.2 4.6E-10 1.6E-14 137.4 24.2 244 403-661 126-406 (693)
221 3dr2_A Exported gluconolactona 99.2 1.7E-09 5.8E-14 117.9 25.7 234 342-613 43-303 (305)
222 3s94_A LRP-6, low-density lipo 99.2 7.7E-06 2.6E-10 97.1 58.9 527 425-1047 16-553 (619)
223 1yiq_A Quinohemoprotein alcoho 99.2 5.3E-09 1.8E-13 126.8 31.6 380 466-937 72-533 (689)
224 1xip_A Nucleoporin NUP159; bet 99.2 2.8E-10 9.6E-15 125.2 18.4 184 345-558 39-233 (388)
225 2ghs_A AGR_C_1268P; regucalcin 99.2 6.5E-09 2.2E-13 114.3 29.3 224 345-605 50-291 (326)
226 2qe8_A Uncharacterized protein 99.2 3.9E-09 1.3E-13 117.1 27.2 267 539-946 17-315 (343)
227 1mda_H Methylamine dehydrogena 99.2 8.1E-10 2.8E-14 121.5 20.8 195 841-1053 127-354 (368)
228 1kb0_A Quinohemoprotein alcoho 99.2 9E-09 3.1E-13 124.5 31.4 192 466-662 79-348 (677)
229 1xip_A Nucleoporin NUP159; bet 99.2 6.3E-10 2.2E-14 122.4 19.0 187 770-988 38-230 (388)
230 2ghs_A AGR_C_1268P; regucalcin 99.2 1.6E-08 5.4E-13 111.2 30.1 224 408-650 51-292 (326)
231 1mda_H Methylamine dehydrogena 99.1 1.5E-09 5.2E-14 119.3 20.8 269 356-669 32-354 (368)
232 1yiq_A Quinohemoprotein alcoho 99.1 1.2E-08 4.1E-13 123.7 30.1 238 417-659 70-418 (689)
233 3q7m_A Lipoprotein YFGL, BAMB; 99.1 7.3E-08 2.5E-12 108.6 34.4 148 466-625 55-216 (376)
234 3dr2_A Exported gluconolactona 99.1 1.6E-08 5.6E-13 110.0 26.7 233 404-654 43-301 (305)
235 1kb0_A Quinohemoprotein alcoho 99.1 5.6E-08 1.9E-12 117.5 32.0 284 359-668 80-514 (677)
236 1fwx_A Nitrous oxide reductase 99.1 2.3E-09 7.9E-14 121.9 18.1 342 465-954 16-433 (595)
237 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.3E-07 4.4E-12 106.6 32.2 271 358-662 55-339 (376)
238 3hxj_A Pyrrolo-quinoline quino 99.0 4.8E-09 1.6E-13 116.0 19.2 294 509-952 31-324 (330)
239 2ece_A 462AA long hypothetical 99.0 6E-08 2E-12 106.3 26.7 238 779-1033 93-399 (462)
240 2ece_A 462AA long hypothetical 99.0 6.3E-08 2.1E-12 106.2 25.3 238 351-604 89-399 (462)
241 3s94_A LRP-6, low-density lipo 99.0 0.00028 9.6E-09 83.7 62.4 457 405-954 39-512 (619)
242 2hz6_A Endoplasmic reticulum t 98.9 8.7E-10 3E-14 123.3 8.1 190 416-625 8-201 (369)
243 3ei3_A DNA damage-binding prot 98.9 0.0006 2.1E-08 86.5 64.4 283 347-658 330-634 (1158)
244 3hxj_A Pyrrolo-quinoline quino 98.9 9.1E-08 3.1E-12 105.6 23.7 266 343-660 59-324 (330)
245 4a0p_A LRP6, LRP-6, low-densit 98.9 0.0005 1.7E-08 81.6 64.0 491 358-954 9-510 (628)
246 1fwx_A Nitrous oxide reductase 98.9 5.1E-08 1.7E-12 110.9 19.5 234 847-1101 99-433 (595)
247 1npe_A Nidogen, entactin; glyc 98.8 1.4E-05 4.9E-10 84.6 36.0 224 406-642 36-263 (267)
248 1kv9_A Type II quinohemoprotei 98.8 2E-06 6.9E-11 103.8 30.5 136 509-652 67-252 (668)
249 2hz6_A Endoplasmic reticulum t 98.8 1.7E-09 5.9E-14 120.9 3.3 183 461-663 8-195 (369)
250 1npe_A Nidogen, entactin; glyc 98.7 2.7E-05 9.2E-10 82.5 33.6 240 418-668 2-245 (267)
251 2iwa_A Glutamine cyclotransfer 98.7 1E-06 3.5E-11 91.0 19.4 212 839-1101 22-239 (266)
252 2ad6_A Methanol dehydrogenase 98.6 7.2E-06 2.5E-10 96.8 28.7 109 509-625 63-194 (571)
253 1flg_A Protein (quinoprotein e 98.6 0.00011 3.7E-09 86.8 38.7 194 467-664 71-359 (582)
254 2iwa_A Glutamine cyclotransfer 98.6 5.8E-06 2E-10 85.4 23.8 209 332-574 7-238 (266)
255 1w6s_A Methanol dehydrogenase 98.6 1.7E-05 5.9E-10 93.2 30.5 197 466-664 64-346 (599)
256 1kv9_A Type II quinohemoprotei 98.6 1.1E-05 3.9E-10 97.3 28.8 285 359-668 69-495 (668)
257 3nol_A Glutamine cyclotransfer 98.6 3.1E-06 1.1E-10 86.0 19.9 200 839-1092 44-249 (262)
258 3nok_A Glutaminyl cyclase; bet 98.6 2.8E-06 9.7E-11 86.2 19.2 198 838-1090 55-257 (268)
259 2ad6_A Methanol dehydrogenase 98.6 4.1E-05 1.4E-09 90.3 32.3 374 466-938 64-523 (571)
260 3nol_A Glutamine cyclotransfer 98.6 5.5E-06 1.9E-10 84.2 21.0 182 453-649 45-244 (262)
261 2fp8_A Strictosidine synthase; 98.5 1.5E-05 5E-10 87.2 25.4 236 840-1101 21-315 (322)
262 1w6s_A Methanol dehydrogenase 98.5 3.8E-05 1.3E-09 90.3 30.0 166 883-1054 245-512 (599)
263 3ott_A Two-component system se 98.5 0.0072 2.5E-07 74.5 62.6 528 344-1044 63-625 (758)
264 3ott_A Two-component system se 98.5 0.0074 2.5E-07 74.4 70.5 537 343-1049 21-590 (758)
265 1flg_A Protein (quinoprotein e 98.5 0.00019 6.5E-09 84.6 35.5 204 417-626 68-365 (582)
266 2xe4_A Oligopeptidase B; hydro 98.5 1.2E-05 4.2E-10 98.7 26.3 248 345-619 175-461 (751)
267 2p4o_A Hypothetical protein; p 98.5 7.7E-05 2.6E-09 80.7 29.6 241 330-606 18-278 (306)
268 2p4o_A Hypothetical protein; p 98.5 4.9E-05 1.7E-09 82.3 27.6 228 406-650 32-278 (306)
269 2fp8_A Strictosidine synthase; 98.5 3.7E-05 1.3E-09 84.0 26.9 249 771-1045 20-313 (322)
270 3nok_A Glutaminyl cyclase; bet 98.5 1.8E-05 6.1E-10 80.4 21.5 181 452-649 56-254 (268)
271 3mbr_X Glutamine cyclotransfer 98.5 1.9E-05 6.5E-10 79.6 21.5 204 837-1093 20-229 (243)
272 1k3i_A Galactose oxidase precu 98.4 3.3E-05 1.1E-09 93.5 27.9 279 347-649 189-530 (656)
273 3mbr_X Glutamine cyclotransfer 98.4 7.4E-05 2.5E-09 75.3 24.2 185 451-649 21-223 (243)
274 3v64_C Agrin; beta propeller, 98.3 0.00095 3.3E-08 73.3 34.3 248 344-624 34-283 (349)
275 1ijq_A LDL receptor, low-densi 98.3 0.0012 4.2E-08 71.3 34.2 232 419-661 3-239 (316)
276 3v65_B Low-density lipoprotein 98.3 0.00068 2.3E-08 75.7 32.7 247 345-624 78-326 (386)
277 3v64_C Agrin; beta propeller, 98.3 0.0011 3.7E-08 72.8 33.1 241 407-661 35-276 (349)
278 3v65_B Low-density lipoprotein 98.3 0.001 3.5E-08 74.2 33.0 239 409-661 80-319 (386)
279 2xbg_A YCF48-like protein; pho 98.3 0.0024 8E-08 69.5 34.6 280 343-657 35-319 (327)
280 3qqz_A Putative uncharacterize 98.3 0.0002 6.9E-09 73.4 23.9 204 837-1044 26-252 (255)
281 3qqz_A Putative uncharacterize 98.2 0.00076 2.6E-08 69.1 27.5 201 343-571 26-251 (255)
282 3p5b_L Low density lipoprotein 98.2 0.0033 1.1E-07 70.3 34.2 232 419-661 85-321 (400)
283 1ijq_A LDL receptor, low-densi 98.2 0.0074 2.5E-07 65.1 36.0 231 365-624 9-246 (316)
284 2xbg_A YCF48-like protein; pho 98.1 0.007 2.4E-07 65.7 35.3 194 838-1043 122-320 (327)
285 1k3i_A Galactose oxidase precu 98.1 0.00025 8.6E-09 85.8 25.9 137 848-990 359-529 (656)
286 4hw6_A Hypothetical protein, I 98.1 0.00076 2.6E-08 76.3 28.0 250 839-1098 140-432 (433)
287 3tc9_A Hypothetical hydrolase; 98.1 0.00046 1.6E-08 78.2 25.9 248 839-1098 138-429 (430)
288 2xe4_A Oligopeptidase B; hydro 98.1 0.00033 1.1E-08 86.0 25.9 200 403-614 170-398 (751)
289 3p5b_L Low density lipoprotein 98.1 0.0013 4.3E-08 73.8 28.4 208 837-1053 111-328 (400)
290 3sov_A LRP-6, low-density lipo 98.0 0.014 4.7E-07 62.9 32.6 208 407-624 36-246 (318)
291 3tc9_A Hypothetical hydrolase; 97.9 0.0011 3.9E-08 74.9 24.4 240 407-659 138-429 (430)
292 1n7d_A LDL receptor, low-densi 97.9 0.00013 4.4E-09 88.2 16.2 208 838-1054 406-623 (699)
293 4hw6_A Hypothetical protein, I 97.9 0.0027 9.3E-08 71.7 26.2 241 406-659 139-432 (433)
294 3kya_A Putative phosphatase; s 97.9 0.003 1E-07 71.3 25.9 254 839-1101 140-477 (496)
295 3sov_A LRP-6, low-density lipo 97.9 0.014 4.9E-07 62.7 30.6 226 426-661 12-239 (318)
296 3m0c_C LDL receptor, low-densi 97.9 0.015 5.3E-07 70.4 33.9 231 419-661 397-633 (791)
297 3m0c_C LDL receptor, low-densi 97.8 0.019 6.3E-07 69.7 34.0 212 405-623 423-639 (791)
298 3amr_A 3-phytase; beta-propell 97.8 0.0073 2.5E-07 64.1 25.5 194 466-668 42-271 (355)
299 3kya_A Putative phosphatase; s 97.7 0.013 4.3E-07 66.2 27.3 245 407-661 140-476 (496)
300 2p9w_A MAL S 1 allergenic prot 97.6 0.0096 3.3E-07 62.7 22.5 203 839-1045 14-265 (334)
301 1n7d_A LDL receptor, low-densi 97.6 0.00065 2.2E-08 82.1 15.8 232 426-668 385-621 (699)
302 2nxp_A Transcription initiatio 97.6 0.00014 4.8E-09 67.8 7.7 96 67-179 48-150 (156)
303 3ei3_A DNA damage-binding prot 97.6 0.42 1.4E-05 60.7 72.3 598 332-1044 19-681 (1158)
304 2j4b_A TAF5, transcription ini 97.5 6.6E-05 2.3E-09 68.0 4.9 96 67-180 29-131 (138)
305 2xtc_A F-box-like/WD repeat-co 97.5 5.6E-05 1.9E-09 60.8 3.7 35 1-35 1-35 (90)
306 2xzh_A Clathrin heavy chain 1; 97.5 0.13 4.5E-06 53.4 30.8 234 841-1101 70-334 (365)
307 3amr_A 3-phytase; beta-propell 97.5 0.026 9E-07 59.9 24.5 197 416-624 39-272 (355)
308 2xzh_A Clathrin heavy chain 1; 97.5 0.14 4.9E-06 53.1 31.8 258 563-954 48-334 (365)
309 1bpo_A Protein (clathrin); cla 97.4 0.22 7.6E-06 53.9 33.4 259 563-954 47-333 (494)
310 2j49_A Transcription initiatio 97.4 0.00012 4.1E-09 67.0 4.6 101 67-182 31-138 (148)
311 3a9g_A Putative uncharacterize 97.4 0.059 2E-06 58.9 27.1 228 838-1087 29-330 (354)
312 3sre_A PON1, serum paraoxonase 97.3 0.025 8.6E-07 61.1 22.6 207 407-624 51-308 (355)
313 2ism_A Putative oxidoreductase 97.2 0.05 1.7E-06 59.5 24.0 230 839-1087 32-333 (352)
314 2vpj_A Kelch-like protein 12; 97.1 0.056 1.9E-06 57.7 22.7 195 416-619 62-281 (301)
315 2p9w_A MAL S 1 allergenic prot 97.1 0.066 2.3E-06 56.3 21.8 164 345-528 14-216 (334)
316 3pbp_A Nucleoporin NUP82; beta 97.0 0.037 1.3E-06 59.9 19.6 108 843-952 26-158 (452)
317 2ism_A Putative oxidoreductase 97.0 0.048 1.7E-06 59.6 21.2 229 407-648 32-333 (352)
318 3a9g_A Putative uncharacterize 97.0 0.24 8.3E-06 53.9 26.6 231 343-603 28-329 (354)
319 2g8s_A Glucose/sorbosone dehyd 96.9 0.16 5.4E-06 55.4 24.8 239 839-1097 19-350 (353)
320 2xn4_A Kelch-like protein 2; s 96.9 0.082 2.8E-06 56.4 22.2 233 416-661 15-277 (302)
321 3ii7_A Kelch-like protein 7; p 96.9 0.17 5.9E-06 54.0 24.6 234 357-621 13-277 (306)
322 1bpo_A Protein (clathrin); cla 96.9 0.72 2.5E-05 50.0 34.2 239 410-661 70-332 (494)
323 2vpj_A Kelch-like protein 12; 96.9 0.057 1.9E-06 57.6 20.3 234 416-661 14-279 (301)
324 3ii7_A Kelch-like protein 7; p 96.9 0.11 3.8E-06 55.4 22.6 232 418-661 13-273 (306)
325 1cru_A Protein (soluble quinop 96.8 0.57 1.9E-05 52.8 28.8 104 838-941 27-163 (454)
326 3sbq_A Nitrous-oxide reductase 96.8 0.49 1.7E-05 52.9 26.1 99 839-940 324-453 (638)
327 3das_A Putative oxidoreductase 96.7 0.66 2.3E-05 49.7 26.9 233 837-1086 31-325 (347)
328 2xn4_A Kelch-like protein 2; s 96.6 0.14 4.8E-06 54.5 21.1 193 416-620 61-280 (302)
329 2g8s_A Glucose/sorbosone dehyd 96.6 0.62 2.1E-05 50.7 26.1 234 407-647 19-340 (353)
330 4asc_A Kelch repeat and BTB do 96.5 0.19 6.6E-06 53.8 21.3 230 419-661 7-278 (315)
331 1xi4_A Clathrin heavy chain; a 96.4 0.18 6.2E-06 63.0 22.1 199 842-1053 70-297 (1630)
332 3sre_A PON1, serum paraoxonase 96.4 1 3.6E-05 48.4 25.9 194 345-557 51-285 (355)
333 1zgk_A Kelch-like ECH-associat 96.3 0.28 9.6E-06 52.3 20.9 232 416-661 24-288 (308)
334 4asc_A Kelch repeat and BTB do 96.3 0.62 2.1E-05 49.8 23.7 235 358-622 7-283 (315)
335 2woz_A Kelch repeat and BTB do 96.2 0.47 1.6E-05 50.8 22.2 230 419-661 18-288 (318)
336 3das_A Putative oxidoreductase 96.1 1.9 6.4E-05 46.2 28.8 236 342-604 30-326 (347)
337 1zgk_A Kelch-like ECH-associat 96.0 0.9 3.1E-05 48.3 23.0 230 846-1101 22-289 (308)
338 1xi4_A Clathrin heavy chain; a 95.8 0.85 2.9E-05 57.3 23.7 89 563-661 47-135 (1630)
339 1tl2_A L10, protein (tachylect 95.7 0.14 4.9E-06 49.9 13.0 144 839-994 42-203 (236)
340 1uuj_A Platelet-activating fac 95.7 0.0094 3.2E-07 47.7 4.0 52 5-56 10-63 (88)
341 2woz_A Kelch repeat and BTB do 95.7 1 3.5E-05 48.1 22.0 234 358-622 18-293 (318)
342 2uvk_A YJHT; unknown function, 95.6 0.37 1.3E-05 52.7 18.6 234 416-661 19-343 (357)
343 3pbp_A Nucleoporin NUP82; beta 95.5 0.42 1.4E-05 51.8 17.4 134 517-656 40-208 (452)
344 3sbq_A Nitrous-oxide reductase 95.3 3.8 0.00013 45.9 24.1 198 847-1046 140-409 (638)
345 1tl2_A L10, protein (tachylect 95.2 0.28 9.5E-06 47.9 13.4 183 890-1091 3-202 (236)
346 2uvk_A YJHT; unknown function, 94.8 2.2 7.7E-05 46.3 21.9 92 847-942 18-128 (357)
347 3s25_A Hypothetical 7-bladed b 94.8 4.7 0.00016 42.3 25.4 181 348-574 57-256 (302)
348 1cru_A Protein (soluble quinop 94.8 0.85 2.9E-05 51.4 18.3 109 878-989 26-161 (454)
349 2be1_A Serine/threonine-protei 94.5 0.94 3.2E-05 48.3 16.8 115 418-537 11-140 (339)
350 2be1_A Serine/threonine-protei 94.2 0.063 2.2E-06 57.3 6.9 201 892-1104 11-236 (339)
351 3s25_A Hypothetical 7-bladed b 94.2 6.4 0.00022 41.3 26.3 175 842-1046 57-256 (302)
352 3qhy_B Beta-lactamase inhibito 93.3 6.9 0.00024 40.6 20.6 222 345-616 25-246 (282)
353 2zwa_A Leucine carboxyl methyl 92.8 6.3 0.00021 47.2 21.9 198 847-1049 396-639 (695)
354 2wg3_C Hedgehog-interacting pr 92.7 15 0.00052 41.1 25.5 109 407-517 15-159 (463)
355 3qhy_B Beta-lactamase inhibito 91.6 14 0.00048 38.2 21.4 184 839-1047 64-248 (282)
356 2wg3_C Hedgehog-interacting pr 90.6 25 0.00085 39.3 28.4 29 587-615 15-44 (463)
357 2zwa_A Leucine carboxyl methyl 90.0 11 0.00038 45.0 20.1 196 460-661 396-636 (695)
358 3q6k_A 43.2 kDa salivary prote 89.0 18 0.00062 39.0 18.5 172 859-1033 124-342 (381)
359 4hvt_A Ritya.17583.B, post-pro 87.9 51 0.0017 39.2 27.2 250 346-615 131-429 (711)
360 4gq2_M Nucleoporin NUP120; bet 85.0 63 0.0022 40.0 23.0 40 1015-1054 236-275 (950)
361 4hvt_A Ritya.17583.B, post-pro 83.8 72 0.0025 37.9 21.8 243 409-659 132-429 (711)
362 3b7f_A Glycosyl hydrolase, BNR 82.7 59 0.002 35.3 26.8 261 837-1106 54-377 (394)
363 3kci_A Probable E3 ubiquitin-p 80.8 68 0.0023 34.8 25.7 287 731-1046 9-346 (389)
364 3q6k_A 43.2 kDa salivary prote 74.3 99 0.0034 33.2 21.0 166 475-645 124-339 (381)
365 3b7f_A Glycosyl hydrolase, BNR 72.5 1.1E+02 0.0038 33.0 30.9 237 405-654 54-366 (394)
366 4gq2_M Nucleoporin NUP120; bet 66.8 1.6E+02 0.0053 36.5 19.1 37 880-917 237-273 (950)
367 3no0_A DNA gyrase subunit A; D 62.9 1.4E+02 0.0047 30.5 23.7 207 879-1099 24-246 (276)
368 3uc1_A DNA gyrase subunit A; D 62.2 1.6E+02 0.0054 30.9 27.9 113 837-952 94-228 (327)
369 3no0_A DNA gyrase subunit A; D 57.2 1.7E+02 0.0058 29.7 22.4 113 837-953 67-197 (276)
370 3l6v_A GYRA, DNA gyrase subuni 50.0 2.6E+02 0.009 29.8 28.3 192 847-1048 5-268 (370)
371 4fhn_B Nucleoporin NUP120; pro 48.0 9.5 0.00032 48.7 3.7 41 1015-1055 238-278 (1139)
372 4gco_A Protein STI-1; structur 47.8 71 0.0024 27.6 8.6 97 15-118 23-124 (126)
373 3f7f_A Nucleoporin NUP120; nuc 44.5 28 0.00097 40.7 6.4 37 1016-1054 223-259 (729)
374 3kci_A Probable E3 ubiquitin-p 41.8 3.6E+02 0.012 28.9 29.9 206 880-1100 106-346 (389)
375 1zi0_A DNA gyrase subunit A; b 41.6 3.1E+02 0.011 28.2 28.3 192 415-615 1-225 (307)
376 2k9m_A RNA polymerase sigma fa 41.5 20 0.00068 31.7 3.6 90 2-104 18-122 (130)
377 2lni_A Stress-induced-phosphop 40.4 1.6E+02 0.0054 24.8 9.9 90 7-102 18-112 (133)
378 2d68_A FOP, FGFR1OP; alpha hel 39.1 25 0.00084 28.0 3.3 29 7-35 20-48 (82)
379 1wp5_A Topoisomerase IV; broke 39.0 3.5E+02 0.012 28.1 25.5 194 415-616 3-225 (323)
380 3lpz_A GET4 (YOR164C homolog); 38.3 1.1E+02 0.0037 32.1 9.1 23 38-60 16-41 (336)
381 3zwu_A Alkaline phosphatase PH 37.6 98 0.0033 35.6 9.5 64 540-603 477-548 (592)
382 2wpv_A GET4, UPF0363 protein Y 37.4 2.1E+02 0.0072 29.6 11.1 23 38-60 17-39 (312)
383 3f7f_A Nucleoporin NUP120; nuc 36.4 5.5E+02 0.019 30.0 15.4 36 881-919 224-259 (729)
384 3mkr_A Coatomer subunit epsilo 36.4 1.1E+02 0.0037 31.4 9.1 85 5-100 64-156 (291)
385 1sqj_A OXG-RCBH, oligoxylogluc 34.7 6.6E+02 0.023 30.0 27.1 158 343-517 14-190 (789)
386 4ga2_A E3 SUMO-protein ligase 33.4 1.4E+02 0.0049 26.5 8.5 94 21-121 13-111 (150)
387 3mkr_A Coatomer subunit epsilo 30.4 2.9E+02 0.0099 28.0 11.3 14 86-99 113-126 (291)
388 4asv_A Small glutamine-rich te 30.1 29 0.00099 28.0 2.4 19 1-19 15-33 (92)
389 1suu_A DNA gyrase subunit A; t 29.9 4.8E+02 0.016 26.9 27.9 193 847-1048 6-234 (312)
390 4fhn_B Nucleoporin NUP120; pro 29.6 1.1E+02 0.0037 38.9 9.1 38 452-491 239-276 (1139)
391 1zi0_A DNA gyrase subunit A; b 29.5 4.8E+02 0.016 26.8 28.9 239 848-1099 2-277 (307)
392 4a9v_A PHOX; hydrolase, beta-p 29.3 1.4E+02 0.0048 33.9 8.7 59 838-897 476-548 (592)
393 4a9v_A PHOX; hydrolase, beta-p 29.1 1.9E+02 0.0064 32.9 9.7 64 540-603 477-548 (592)
394 3zwu_A Alkaline phosphatase PH 27.7 1.3E+02 0.0044 34.6 8.3 59 588-647 478-548 (592)
395 1elw_A TPR1-domain of HOP; HOP 27.3 2.5E+02 0.0084 22.7 10.2 89 8-102 7-100 (118)
396 4gcn_A Protein STI-1; structur 26.9 2.1E+02 0.0073 24.4 8.2 100 15-116 18-123 (127)
397 1xks_A Nuclear pore complex pr 26.2 6.7E+02 0.023 27.4 17.1 67 732-798 47-125 (450)
398 3uc1_A DNA gyrase subunit A; D 26.0 5.7E+02 0.02 26.5 23.9 203 404-616 40-279 (327)
399 3qou_A Protein YBBN; thioredox 25.8 2.5E+02 0.0084 28.5 9.7 101 13-120 125-230 (287)
400 4d9s_A UVB-resistance protein 25.6 6.4E+02 0.022 27.0 33.8 202 880-1099 122-357 (406)
401 3upv_A Heat shock protein STI1 25.3 2.3E+02 0.0079 23.7 8.2 88 9-102 8-100 (126)
402 3sz7_A HSC70 cochaperone (SGT) 25.0 2.1E+02 0.0071 25.6 8.2 88 9-102 15-107 (164)
403 1kdl_A YOPD protein; yersinia, 24.7 41 0.0014 19.5 1.7 14 5-18 4-17 (26)
404 1wp5_A Topoisomerase IV; broke 23.7 6.2E+02 0.021 26.2 27.6 204 837-1045 38-277 (323)
405 2vgx_A Chaperone SYCD; alterna 22.8 3.9E+02 0.013 23.4 9.4 84 12-101 28-116 (148)
406 1am7_A Lysozyme; glycosidase, 22.4 1.1E+02 0.0038 27.8 5.1 59 45-104 69-127 (158)
407 2qfc_A PLCR protein; TPR, HTH, 22.1 3.1E+02 0.011 27.6 9.7 95 7-101 77-182 (293)
408 1vk8_A Hypothetical protein TM 21.3 13 0.00046 31.3 -1.0 36 24-60 37-72 (106)
409 2dba_A Smooth muscle cell asso 20.7 3.9E+02 0.013 22.7 11.2 89 8-102 31-127 (148)
410 3ma5_A Tetratricopeptide repea 20.3 1.3E+02 0.0044 24.4 5.1 53 44-102 17-69 (100)
411 3urz_A Uncharacterized protein 20.1 4E+02 0.014 25.1 9.5 106 6-118 5-131 (208)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.4e-68 Score=650.55 Aligned_cols=566 Identities=22% Similarity=0.368 Sum_probs=487.3
Q ss_pred EEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 337 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 337 ~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
...|+ |++.|+|++|||||+ +||+|+.|++|+|||. +++.+.. +.+|.+.|.+++|+|
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fsp 67 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSP 67 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECT
T ss_pred eeEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECC
Confidence 35576 999999999999999 6999999999999995 5555442 678999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
||++||+++.|++|+|||.. ++.+. .+.+|...|.+++|+|+++ +|++++.|+.+++|+... .......+|..
T Consensus 68 dg~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~ 140 (577)
T 2ymu_A 68 DGQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNG-QLLQTLTGHSS 140 (577)
T ss_dssp TSSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTC-CEEEEECCCSS
T ss_pred CCCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeeccccc-ceeeeccCCCC
Confidence 99999999999999999964 44443 6889999999999999999 899999999999999654 45567788999
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
.|..+.++++. ..+++++.++.+++|+.. .........+...+.+++++|+++++++++. ++.|++||. +++
T Consensus 141 ~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~ 212 (577)
T 2ymu_A 141 SVWGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQ 212 (577)
T ss_dssp CEEEEEECTTS--SCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSC
T ss_pred ceeeeeeecCC--ccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCc
Confidence 99999998755 789999999999999865 3445566778889999999999999999975 788999995 578
Q ss_pred eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 001176 576 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 655 (1132)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 655 (1132)
.+..+.+|.. .|.+++|+|+++++++++.|+.|++||. +++.+..+..|. ..|.+++|+|+++.+++++.|+.|++
T Consensus 213 ~~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~--~~v~~v~~~~d~~~l~~~~~d~~i~~ 288 (577)
T 2ymu_A 213 LLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVNGVAFRPDGQTIASASDDKTVKL 288 (577)
T ss_dssp EEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCC--CCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 8888888877 8999999999999999999999999996 466777777664 48999999999999999999999999
Q ss_pred EEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccc
Q 001176 656 LANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP 735 (1132)
Q Consensus 656 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1132)
|+... +....+.+
T Consensus 289 w~~~~--~~~~~~~~----------------------------------------------------------------- 301 (577)
T 2ymu_A 289 WNRNG--QLLQTLTG----------------------------------------------------------------- 301 (577)
T ss_dssp EETTS--CEEEEECC-----------------------------------------------------------------
T ss_pred EeCCC--cEEEEEec-----------------------------------------------------------------
Confidence 99643 22222221
Q ss_pred ccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccccc
Q 001176 736 RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 815 (1132)
Q Consensus 736 ~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 815 (1132)
|...|.+++|+|+++.+++++.|+.+++|+....
T Consensus 302 --------------------------------h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-------------- 335 (577)
T 2ymu_A 302 --------------------------------HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-------------- 335 (577)
T ss_dssp --------------------------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------------
T ss_pred --------------------------------CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--------------
Confidence 5567899999999999999999999999985321
Q ss_pred ccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeE
Q 001176 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 894 (1132)
Q Consensus 816 ~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~l 894 (1132)
.+. .+.+ | ...+.+++|+|+|+++++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|
T Consensus 336 --------~~~--~~~~--~-~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l 400 (577)
T 2ymu_A 336 --------HLQ--TLTG--H-SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTI 400 (577)
T ss_dssp --------EEE--EECC--C-SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCE
T ss_pred --------eeE--EEeC--C-CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEE
Confidence 111 1223 6 78999999999999999998 899999995 5788899999999999999999 89999
Q ss_pred EEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCc
Q 001176 895 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE 974 (1132)
Q Consensus 895 asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 974 (1132)
++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||.... .+....+|. ..+
T Consensus 401 ~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~---~~v 470 (577)
T 2ymu_A 401 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHS---SSV 470 (577)
T ss_dssp EEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCS---SCE
T ss_pred EEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCC---CCE
Confidence 99999999999995 67788899999999999999999999999999999999997542 233344454 678
Q ss_pred eeEEECCCCcEEEE-EeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccC
Q 001176 975 TKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1053 (1132)
Q Consensus 975 ~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~ 1053 (1132)
.+++|+||+++|++ +.|+.|++||.+++.+..+. +|...|++++|+|||++||+++.||.|++||. +++.+..+.
T Consensus 471 ~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~---~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~ 546 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 546 (577)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEe---CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc
Confidence 99999999999999 57899999999888777663 56899999999999999999999999999996 566665553
Q ss_pred CCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 001176 1054 PSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1096 (1132)
Q Consensus 1054 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~ 1096 (1132)
+|+..|.+++|+| |+++|+|++.|++|++||
T Consensus 547 -----------~h~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 -----------GHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -----------CCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred -----------CCCCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 8899999999999 889999999999999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-65 Score=624.93 Aligned_cols=575 Identities=13% Similarity=0.140 Sum_probs=461.4
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+.+.+.+++|||||+ +||+++ ++.|+||++.+++.... +.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEEE
Confidence 467899999999999 577776 57999999987765442 678999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC----CcEEEEECCCCeEEEEecCCCCCe
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFEGHEAPV 497 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~h~~~v 497 (1132)
+|+.|++|+|||+.+++... ...+.+|.++|.+++|+||++ .|++++.+ +.|++|| .++....+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 99999999999997654432 235788999999999999999 78877755 3677776 567778899999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCcee
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 577 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1132)
.+++|+|++. ..|++++.|++|++||....+....+.+|...|.+++|+|+|++|++++. |+.|++||+.+++.+
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEe
Confidence 9999988642 46999999999999999888778889999999999999999999999985 788999999999988
Q ss_pred eeec-------cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC-CCCcceEEEcCCCCEEEEEeC
Q 001176 578 RTYS-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 578 ~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
..+. +|.. .|.+++|+|++++|++++.|+.|++||+.+++.+..+..+.. ...+..+.| ++..+++++.
T Consensus 226 ~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~ 302 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA 302 (611)
T ss_dssp EECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET
T ss_pred eeeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeC
Confidence 8874 5665 899999999999999999999999999999999888865421 112344555 7889999999
Q ss_pred CCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccc
Q 001176 650 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 729 (1132)
Q Consensus 650 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1132)
|+.+++|+..++ .....+.
T Consensus 303 d~~i~~~~~~~~-~~~~~~~------------------------------------------------------------ 321 (611)
T 1nr0_A 303 NGFINFVNPELG-SIDQVRY------------------------------------------------------------ 321 (611)
T ss_dssp TCCEEEEETTTT-EEEEEEC------------------------------------------------------------
T ss_pred CCcEEEEeCCCC-CcceEEc------------------------------------------------------------
Confidence 999999998766 3322222
Q ss_pred ccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcc
Q 001176 730 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 809 (1132)
Q Consensus 730 ~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 809 (1132)
+|...|.+++|+|+|++|++++.|+.|++||+..
T Consensus 322 -------------------------------------gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~--------- 355 (611)
T 1nr0_A 322 -------------------------------------GHNKAITALSSSADGKTLFSADAEGHINSWDIST--------- 355 (611)
T ss_dssp -------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------
T ss_pred -------------------------------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---------
Confidence 2567799999999999999999999999998642
Q ss_pred ccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEE---eeCCCCCeEEEE
Q 001176 810 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM---FMSPPPAATFLA 885 (1132)
Q Consensus 810 ~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~---~~~~~~~i~~l~ 885 (1132)
+........+ | ...|.+++|++++. +++++ |+++++|+..++..... .........+++
T Consensus 356 -------------~~~~~~~~~~--h-~~~v~~~~~s~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (611)
T 1nr0_A 356 -------------GISNRVFPDV--H-ATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418 (611)
T ss_dssp -------------CCEEECSSCS--C-SSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred -------------CceeeecccC--C-cceEEEEEECCCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEE
Confidence 2222211122 6 88999999998775 55555 99999999876543210 011234568899
Q ss_pred EeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCC
Q 001176 886 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 965 (1132)
Q Consensus 886 ~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~ 965 (1132)
|+| ++.+++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... ... .
T Consensus 419 ~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~ 488 (611)
T 1nr0_A 419 VSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-I 488 (611)
T ss_dssp ECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-E
T ss_pred EeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-c
Confidence 999 78777776 567899998 344 55554 88899999999999999999999999999998754211 111 2
Q ss_pred CCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCC-CceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001176 966 GRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 966 ~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~-~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~ 1043 (1132)
+|. ..|.+++|+|||++|++ +.|+.|++|++.. ..........+|...|++++|+|||++||+|+.|++|++||+
T Consensus 489 ~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 489 VHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp ECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 343 57999999999999999 5799999999932 332221122347999999999999999999999999999999
Q ss_pred CCcceecccCCCccccccccCCC-CCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1044 ETLRFRCRIGPSAYIPTYAVSSN-TAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
.++..... ....+| ...|.+++|+| ++. |++++.|++|++|++.
T Consensus 566 ~~~~~~~~---------~~~~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 566 NKPSDHPI---------IIKGAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TCTTSCCE---------EETTSSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred CCcccccc---------hhhccCcccCeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 98753210 112377 78999999999 666 9999999999999973
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.3e-64 Score=613.47 Aligned_cols=567 Identities=15% Similarity=0.173 Sum_probs=458.9
Q ss_pred cCCcceeeecCCCCCCceecc------CCcccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccc
Q 001176 309 TGQSDEVSFAGVAHTPNVYSQ------DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH 381 (1132)
Q Consensus 309 ~~~v~~~~~~~~g~~~~~~~~------d~~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~ 381 (1132)
.+.+..++|+|||+.++.... +...+....++. |.+.|++++|||||+ +||+|+.|++|+|||+.+++....
T Consensus 18 ~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE
T ss_pred cCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee
Confidence 346678999999998887653 223456677776 999999999999998 799999999999999976543221
Q ss_pred cceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC----CeEEEEEecCCCceeeeeeeecccCCEEEEE
Q 001176 382 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIA 457 (1132)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~ 457 (1132)
. .+.+|.+.|.+++|+|||++||+++.+ +.|++|| .+.... .+.+|...|++++
T Consensus 97 ~-----------------~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~ 154 (611)
T 1nr0_A 97 T-----------------TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVD 154 (611)
T ss_dssp E-----------------EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEE
T ss_pred E-----------------eecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEE
Confidence 0 156799999999999999999998865 4677777 444433 5789999999999
Q ss_pred EecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec--
Q 001176 458 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-- 535 (1132)
Q Consensus 458 ~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-- 535 (1132)
|+|++.. .|++|+.|++|++||..+++.+.++.+|...|.+++|+|+ +.+|++++.|++|++||+.+++....+.
T Consensus 155 f~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd--g~~las~s~D~~i~lwd~~~g~~~~~~~~~ 231 (611)
T 1nr0_A 155 FKPSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD--GSLFASTGGDGTIVLYNGVDGTKTGVFEDD 231 (611)
T ss_dssp ECSSSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred ECCCCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC--CCEEEEEECCCcEEEEECCCCcEeeeeccc
Confidence 9999874 5999999999999999999999999999999999999885 4899999999999999999888777663
Q ss_pred -----CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC--CceEEEEEeCCCCEEEEEEcCCe
Q 001176 536 -----APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQ 608 (1132)
Q Consensus 536 -----~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~ 608 (1132)
.|.+.|.+++|+|+|++|++++. |+.|++||+.+++.+..+..+.. .....+.| ++..+++++.|+.
T Consensus 232 ~~~~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~ 305 (611)
T 1nr0_A 232 SLKNVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGF 305 (611)
T ss_dssp TSSSCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCC
T ss_pred cccccccCCCEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCc
Confidence 68899999999999999999985 78899999999998888765422 13445555 6788999999999
Q ss_pred EEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcc
Q 001176 609 IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 688 (1132)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1132)
+++||..+++....+..|.. .|.+++|+|+|++|++++.|++|++||+.++ .....+.
T Consensus 306 i~~~~~~~~~~~~~~~gh~~--~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~-~~~~~~~------------------- 363 (611)
T 1nr0_A 306 INFVNPELGSIDQVRYGHNK--AITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFP------------------- 363 (611)
T ss_dssp EEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSS-------------------
T ss_pred EEEEeCCCCCcceEEcCCCC--CEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-ceeeecc-------------------
Confidence 99999999988887776644 8999999999999999999999999999877 2221110
Q ss_pred cccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCccc
Q 001176 689 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 768 (1132)
Q Consensus 689 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~ 768 (1132)
..|
T Consensus 364 -----------------------------------------------------------------------------~~h 366 (611)
T 1nr0_A 364 -----------------------------------------------------------------------------DVH 366 (611)
T ss_dssp -----------------------------------------------------------------------------CSC
T ss_pred -----------------------------------------------------------------------------cCC
Confidence 115
Q ss_pred ccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeC
Q 001176 769 ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 848 (1132)
Q Consensus 769 ~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~d 848 (1132)
...|.+++|++++ .+++++.|+.+++|+......... ......+ .....+++|+|+
T Consensus 367 ~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~~~~~~~------~~~~~~~~~s~d 422 (611)
T 1nr0_A 367 ATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------KAVANKL------SSQPLGLAVSAD 422 (611)
T ss_dssp SSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------SCCEEEC------SSCEEEEEECTT
T ss_pred cceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------ceeeeec------CCCCcEEEEeCC
Confidence 6678999999776 588999999999998653221100 0000011 334678999999
Q ss_pred CCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccccee--eeeeccccCCeeE
Q 001176 849 DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRITG 926 (1132)
Q Consensus 849 g~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~ 926 (1132)
|..++++.++.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|+.|++||+.+++. +.. .+|...|++
T Consensus 423 g~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~ 496 (611)
T 1nr0_A 423 GDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITS 496 (611)
T ss_dssp SSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEE
T ss_pred CcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEE
Confidence 9988888899999999 344 55555 888899999999 899999999999999999987653 233 679999999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCC-cccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCC-CCc
Q 001176 927 LAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK-LEC 1003 (1132)
Q Consensus 927 l~~spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~-~~~ 1003 (1132)
++|+|||++|++++.|++|++|++.+ ++.... ....+|. ..|.+++|+|||++|++ +.|++|++||+. +..
T Consensus 497 v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 497 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred EEECCCCCEEEEEcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence 99999999999999999999999987 432110 0122354 68999999999999999 579999999993 332
Q ss_pred eeecCCCCCC-CCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001176 1004 SRSWSPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1044 (1132)
Q Consensus 1004 ~~~~~~~~~h-~~~i~~i~~s~dg~~las~~~dg~i~vwd~~ 1044 (1132)
.. .....+| ...|++++|+||++ |++++.||+|++|++.
T Consensus 571 ~~-~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 571 HP-IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp CC-EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred cc-chhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 21 0113467 78999999999998 9999999999999984
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.3e-64 Score=610.30 Aligned_cols=555 Identities=21% Similarity=0.376 Sum_probs=477.8
Q ss_pred cccCCcceeeecCCCCCCceeccCC------cccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccc
Q 001176 307 IRTGQSDEVSFAGVAHTPNVYSQDD------LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERL 379 (1132)
Q Consensus 307 ~~~~~v~~~~~~~~g~~~~~~~~d~------~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~ 379 (1132)
.|...|.+++|+|||+.++++..|. .++++++++. |...|++++|||||+ +||+|+.|++|+|||.. ++.+
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~~-~~~~ 91 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLL 91 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-SCEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECC-CCEE
Confidence 4667899999999999999886653 4678888888 999999999999998 69999999999999964 4444
Q ss_pred cccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEe
Q 001176 380 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA 459 (1132)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s 459 (1132)
.. +.+|.+.|.+++|+||+++|++++.|+.+++|+..... .....+|...|.++.|+
T Consensus 92 ~~-------------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~ 148 (577)
T 2ymu_A 92 QT-------------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFS 148 (577)
T ss_dssp EE-------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEEC
T ss_pred EE-------------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeee
Confidence 32 67899999999999999999999999999999976542 22467899999999999
Q ss_pred cCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC
Q 001176 460 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN 539 (1132)
Q Consensus 460 ~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 539 (1132)
|++. .+++++.++.+++|+. ..........|...|.+++++|++ .++++++.|+.|++||.. .+....+..|..
T Consensus 149 ~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~ 222 (577)
T 2ymu_A 149 PDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSS 222 (577)
T ss_dssp TTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECTT-SCEEEEEECCSS
T ss_pred cCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeecCCC--CEEEEEcCCCEEEEEeCC-CcEEEEEecCCC
Confidence 9999 7899999999999995 455566777899999999998754 899999999999999964 566677888999
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1132)
.|.+++|+|++++|++++. ++.|++||. +++.+..+.+|.. .|.+++|+|+++.+++++.|+.|++||.. ++.
T Consensus 223 ~v~~~~~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~ 295 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRN-GQL 295 (577)
T ss_dssp CEEEEEECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT-SCE
T ss_pred CEEEEEECCCCCEEEEEeC----CCEEEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcE
Confidence 9999999999999999975 778999995 4778888888877 89999999999999999999999999964 567
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccc
Q 001176 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 699 (1132)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 699 (1132)
+..+..|. ..|.+++|+|++++|++++.|+.|++|+.... . ...+.
T Consensus 296 ~~~~~~h~--~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~-~~~~~------------------------------ 341 (577)
T 2ymu_A 296 LQTLTGHS--SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-H-LQTLT------------------------------ 341 (577)
T ss_dssp EEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTSC-E-EEEEC------------------------------
T ss_pred EEEEecCC--CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-e-eEEEe------------------------------
Confidence 77777664 48999999999999999999999999997543 1 11111
Q ss_pred cccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEec
Q 001176 700 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 779 (1132)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 779 (1132)
.|...+.+++|+|
T Consensus 342 -------------------------------------------------------------------~~~~~v~~~~~s~ 354 (577)
T 2ymu_A 342 -------------------------------------------------------------------GHSSSVWGVAFSP 354 (577)
T ss_dssp -------------------------------------------------------------------CCSSCEEEEEECT
T ss_pred -------------------------------------------------------------------CCCCCEEEEEECC
Confidence 1456788999999
Q ss_pred CCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CC
Q 001176 780 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG 858 (1132)
Q Consensus 780 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg 858 (1132)
+|+.+++++.||.+++|+.. +..+.. +.+ | ...|.+++|+|||++|++++ |+
T Consensus 355 ~g~~l~~~~~dg~v~~~~~~-----------------------~~~~~~-~~~--~-~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 355 DGQTIASASDDKTVKLWNRN-----------------------GQLLQT-LTG--H-SSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp TSSEEEEEETTSEEEEEETT-----------------------CCEEEE-EEC--C-SSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCEEEEEeCCCEEEEEcCC-----------------------CCEEEE-ecC--C-CCCeEEEEECCCCCEEEEEeCCC
Confidence 99999999999999999742 111111 223 6 88999999999999999998 89
Q ss_pred eEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEE
Q 001176 859 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 938 (1132)
Q Consensus 859 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s 938 (1132)
.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++
T Consensus 408 ~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las 484 (577)
T 2ymu_A 408 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 484 (577)
T ss_dssp EEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred EEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 9999995 5788899999999999999999 8999999999999999996 56788899999999999999999999999
Q ss_pred EcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeCCCCceeecCCCCCCCCCe
Q 001176 939 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPI 1017 (1132)
Q Consensus 939 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i 1017 (1132)
++.|++|++||... + ++....+|. ..|++++|+|||++|++ +.|+.|++||.+++++..+ .+|...|
T Consensus 485 ~~~d~~i~iw~~~~-~-----~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~---~~h~~~v 552 (577)
T 2ymu_A 485 ASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSSV 552 (577)
T ss_dssp EETTSEEEEEETTS-C-----EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE---ECCSSCE
T ss_pred EeCCCEEEEEcCCC-C-----EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEE---cCCCCCE
Confidence 99999999999643 3 344455665 67999999999999999 5789999999988777765 4579999
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEe
Q 001176 1018 SSAIYSCDGLLVYAGFCDGAIGVFD 1042 (1132)
Q Consensus 1018 ~~i~~s~dg~~las~~~dg~i~vwd 1042 (1132)
++++|+|||++|++++.||+|++||
T Consensus 553 ~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 553 WGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999999997
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.9e-63 Score=659.66 Aligned_cols=615 Identities=13% Similarity=0.168 Sum_probs=508.1
Q ss_pred eec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC
Q 001176 339 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 339 ~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
.+. |.+.|++++|||+|+ ++++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDD 669 (1249)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCC
Confidence 444 999999999999999 699999999999999999887653 66899999999999999
Q ss_pred CeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCe
Q 001176 418 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 497 (1132)
Q Consensus 418 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v 497 (1132)
++||+|+.||+|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|...|
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence 999999999999999999987665 67899999999999996554489999999999999999999999999999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------------CCeEEEEEEcCCCCEEEEEecCCCCCC
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------------GNWCTMMAYSADGTRLFSCGTSKEGES 564 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1132)
.+++|+|++ .++++++.||.|++||+.+......+... ...+.+++|+|+|+.+++++ ++
T Consensus 747 ~~~~~sp~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~ 819 (1249)
T 3sfz_A 747 NHCRFSPDD--ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KN 819 (1249)
T ss_dssp EEEEECSST--TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TT
T ss_pred EEEEEecCC--CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CC
Confidence 999998854 89999999999999999987765544321 23678999999999999986 56
Q ss_pred eEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE
Q 001176 565 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 644 (1132)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1132)
.+.+||..++..+..+...+...+.+++|+|++.++++++.||.|++||+.++..+..+..|.. .|.+++|+|+|+++
T Consensus 820 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l 897 (1249)
T 3sfz_A 820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSF 897 (1249)
T ss_dssp EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEE
T ss_pred cEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEE
Confidence 7999999999988887744444899999999999999999999999999999999999887754 89999999999999
Q ss_pred EEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCc
Q 001176 645 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 724 (1132)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1132)
++++.||.|++|++.+............
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~---------------------------------------------------- 925 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAIVLKQE---------------------------------------------------- 925 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSSSEEEE----------------------------------------------------
T ss_pred EEEeCCCeEEEEEccccceeeeecccce----------------------------------------------------
Confidence 9999999999999865411110000000
Q ss_pred CCccccccccc-ccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccC
Q 001176 725 IDGSRLVDVKP-RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 803 (1132)
Q Consensus 725 ~~~~~~~~~~~-~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 803 (1132)
.......+... +.....+.+.++...... ... .....+.+++++|+++.+++++.+|.+.+|++..
T Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~--- 992 (1249)
T 3sfz_A 926 IDVVFQENETMVLAVDNIRGLQLIAGKTGQ----IDY------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN--- 992 (1249)
T ss_dssp EEEEEETTEEEEEEEESSSSEEEEEESSCC----EEE------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT---
T ss_pred eeEEEcCCCcEEEEecCCcceEEEecCcce----EEE------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC---
Confidence 00001111111 122223555555544311 111 1346799999999999999999999999998642
Q ss_pred CCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeE
Q 001176 804 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT 882 (1132)
Q Consensus 804 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~ 882 (1132)
+..... +.+ | ...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...|.
T Consensus 993 -------------------~~~~~~-~~~--h-~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~ 1048 (1249)
T 3sfz_A 993 -------------------NRVFSS-GVG--H-KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVK 1048 (1249)
T ss_dssp -------------------TSCEEE-CCC--C-SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEE
T ss_pred -------------------Cceeee-ccc--C-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEE
Confidence 222221 223 6 88999999999999999998 9999999999988764 557999999
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeee
Q 001176 883 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQ 962 (1132)
Q Consensus 883 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~ 962 (1132)
+++|+| ++ .+++++.||.|++||+.+++....+.+|.+.|++++|+|+++++++++.|++|++||+.+++ .+.
T Consensus 1049 ~~~~~~-~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~ 1121 (1249)
T 3sfz_A 1049 DFRLLQ-DS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLH 1121 (1249)
T ss_dssp EEEECS-SS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSB
T ss_pred EEEEcC-CC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eee
Confidence 999999 65 56789999999999999999999999999999999999999999999999999999999876 344
Q ss_pred CCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CCCceeecC------CCCCCCCCeEEEEEccCCCEEEEEec
Q 001176 963 APAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWS------PKDALPAPISSAIYSCDGLLVYAGFC 1034 (1132)
Q Consensus 963 ~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~------~~~~h~~~i~~i~~s~dg~~las~~~ 1034 (1132)
...+|. ..|.+++|+|||++|++ +.||.|++||+ +++.+..+. ...+|...|++++|+|||++|++++
T Consensus 1122 ~l~~h~---~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~- 1197 (1249)
T 3sfz_A 1122 ELKGHN---GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG- 1197 (1249)
T ss_dssp CCCCCS---SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-
T ss_pred eeccCC---CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-
Confidence 455665 67999999999999999 56899999999 565554431 1245789999999999999999885
Q ss_pred CCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1035 DGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1035 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
|.|++||+.+++.+..+. +|...+.+++|+| ++.+|++++.||.|++|++.
T Consensus 1198 -g~v~vwd~~~g~~~~~~~-----------~~~~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1198 -GYLKWWNVATGDSSQTFY-----------TNGTNLKKIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp -SSEEEBCSSSCBCCCCCC-----------CSSCCCCCCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred -CeEEEEECCCCceeeeee-----------ccCCcccEEEECC-CCCEEEEecCCcEEEEEeec
Confidence 999999999998876654 5667888999999 88999999999999999985
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.8e-59 Score=570.51 Aligned_cols=559 Identities=10% Similarity=0.159 Sum_probs=474.5
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCC----ccccccceeeeecccccccccccccCCCCcC-eEEEEEcC-
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR----ERLAHKPFKVWDISAASMPLQNALLNDAAIS-VNRCVWGP- 415 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~sp- 415 (1132)
|.+.|++++|||+|+ +|++++ ++.|+|||+.++ +.... +.+|.+. |.+++|+|
T Consensus 17 ~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFSPI 75 (615)
T ss_dssp CTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEECSS
T ss_pred ccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEECcC
Confidence 778999999999999 577776 899999999987 44332 6789999 99999999
Q ss_pred -CCCeEEEEeCCCeEEEEEecCCC-----ceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC----CcEEEEECCCCe
Q 001176 416 -DGLMLGVAFSKHIVHLYTYNPTG-----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGR 485 (1132)
Q Consensus 416 -dg~~las~~~dg~i~iwd~~~~~-----~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d----g~v~vwd~~~~~ 485 (1132)
|+++||+|+.||.|++||+.++. .......+.+|...|.+++|+|+++ +|++++.+ +.|++|| .++
T Consensus 76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~~ 151 (615)
T 1pgu_A 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SGN 151 (615)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TCC
T ss_pred CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CCC
Confidence 99999999999999999997551 1223346778999999999999999 78888877 6888887 777
Q ss_pred EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC---eEEEEEEcCC-CCEEEEEecCCC
Q 001176 486 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSAD-GTRLFSCGTSKE 561 (1132)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~~~~ 561 (1132)
.+..+.+|...|.+++|+|++. .++++++.|+.|++||+.+.+....+..|.. .|.+++|+|+ +++|++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---
T ss_pred cceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---
Confidence 8899999999999999988652 3899999999999999999888888988988 9999999999 999999975
Q ss_pred CCCeEEEEeCCCCceeeee-c---cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC--CCCcceE
Q 001176 562 GESHLVEWNESEGAIKRTY-S---GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRL 635 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~ 635 (1132)
++.|++||+.+++.+..+ . .|.. .|.+++|+ ++.++++++.|+.|++||+.+++.+..+..+.. ...+.++
T Consensus 228 -dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 228 -DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred -CCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 778999999999999998 5 6665 89999999 999999999999999999999999998876531 1356677
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCC
Q 001176 636 RFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP 715 (1132)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 715 (1132)
.|. ++.++++++.||.|++||+.++ +....+.+|...+..+
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~~------------------------------------- 345 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITAL------------------------------------- 345 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEEE-------------------------------------
T ss_pred EeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEEE-------------------------------------
Confidence 775 8999999999999999999987 6667777766544321
Q ss_pred CcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEE
Q 001176 716 AVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKL 795 (1132)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~v 795 (1132)
.+ ++ ++..+.|+.|++|++. .+. ..|...|.+++| +++..+++++.|+.+++
T Consensus 346 ------------~~-~~--l~~~~~dg~i~~w~~~---------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 346 ------------TV-NP--LISGSYDGRIMEWSSS---------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKV 397 (615)
T ss_dssp ------------ET-TT--TEEEETTSCEEETTTT---------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEE
T ss_pred ------------Ee-cC--cEEECCCCeEEEEEch---------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEE
Confidence 12 23 5666678999999987 122 348889999999 66788999999999999
Q ss_pred EeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEee
Q 001176 796 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM 875 (1132)
Q Consensus 796 w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~ 875 (1132)
|++...+. ...+.+++++|++.+++++.++.+.+|+..+++.+..+.
T Consensus 398 ~~~~~~~~---------------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (615)
T 1pgu_A 398 NGITKHEF---------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 444 (615)
T ss_dssp TTEEEEEC---------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEcccCcc---------------------------------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc
Confidence 98753211 235788999999999999889999999999999988887
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeC-CCcEEEEEcccceee-eeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCc
Q 001176 876 SPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVK-TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 953 (1132)
Q Consensus 876 ~~~~~i~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~ 953 (1132)
|...+++++|+ +++|++++. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.|+.|++||+.++
T Consensus 445 -~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 520 (615)
T 1pgu_A 445 -LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR 520 (615)
T ss_dssp -CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred -cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC
Confidence 88999999998 579999999 999999999988766 778899999999999999999999999999999999876
Q ss_pred ccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEcc---------
Q 001176 954 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSC--------- 1024 (1132)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~--------- 1024 (1132)
+. +.... ..|...|++++|+|
T Consensus 521 ~~-----~~~~~---------------------------------------------~~h~~~v~~~~~sp~~~~~~~~~ 550 (615)
T 1pgu_A 521 EV-----KTSRW---------------------------------------------AFRTSKINAISWKPAEKGANEEE 550 (615)
T ss_dssp EE-----EECCS---------------------------------------------CCCSSCEEEEEECCCC------C
T ss_pred cc-----eeEee---------------------------------------------cCCCCceeEEEEcCccccccccc
Confidence 52 11111 11578899999999
Q ss_pred -CCCEEEEEecCCcEEEEeCCCc-ceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1025 -DGLLVYAGFCDGAIGVFDAETL-RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1025 -dg~~las~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
++++||+++.||.|++||+.++ +.+..+ .+|...+.+++|+| ++. |++++.||.|++|++..
T Consensus 551 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----------~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 551 IEEDLVATGSLDTNIFIYSVKRPMKIIKAL-----------NAHKDGVNNLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CSCCEEEEEETTSCEEEEESSCTTCCEEET-----------TSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred cCCCEEEEEcCCCcEEEEECCCCceechhh-----------hcCccceEEEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 9999999999999999999987 555544 37889999999999 777 99999999999999975
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.9e-58 Score=608.00 Aligned_cols=570 Identities=16% Similarity=0.248 Sum_probs=472.9
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
.+.+|.+.|++++|||||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|+.|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 367899999999999999999999999999999999987665 6789999999999999999 89999999999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 480 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 480 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
|+.+++.+..+.+|...|.+++|++..++.++++++.|+.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9999999999999999999999999877789999999999999999999999999999999999999999999999985
Q ss_pred CCCCCeEEEEeCCCCceeeeecccc------------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFR------------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 627 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1132)
++.|++||+.+++....+.... ...+.+++|+|++..+++++ ++.+.+||+.++..+..+.. .
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~-~ 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT-G 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-S
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcC-C
Confidence 7889999999988776654321 12577899999999999887 78999999999998887763 2
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCC
Q 001176 628 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 707 (1132)
Q Consensus 628 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 707 (1132)
+...|.+++|+|++.++++++.||.|++|++.++ .....+.+
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~------------------------------------- 880 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRG------------------------------------- 880 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECC-------------------------------------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCC-------------------------------------
Confidence 2348999999999999999999999999999877 43333332
Q ss_pred CCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEee
Q 001176 708 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL 787 (1132)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 787 (1132)
|...|.+++|+|+|+.++++
T Consensus 881 ------------------------------------------------------------h~~~v~~v~~spdg~~l~s~ 900 (1249)
T 3sfz_A 881 ------------------------------------------------------------HLSWVHGVMFSPDGSSFLTA 900 (1249)
T ss_dssp ------------------------------------------------------------CSSCEEEEEECTTSSEEEEE
T ss_pred ------------------------------------------------------------CccceEEEEECCCCCEEEEE
Confidence 45667888888888888888
Q ss_pred cccceeEEEeeccccCCCCCcccc------------------ccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC
Q 001176 788 ASNAVHKLWKWQRTERNPSGKATA------------------NVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 849 (1132)
Q Consensus 788 ~~dg~i~vw~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg 849 (1132)
+.||.+++|++............. .....+++..++..... + ...+.+++|+|++
T Consensus 901 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~i~~~~~sp~g 973 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYL------P-EAQVSCCCLSPHL 973 (1249)
T ss_dssp ETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEE------C-CSCEEEEEECTTS
T ss_pred eCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEc------c-cCcEEEEEEcCCC
Confidence 888888888875422111000000 00111222223322221 2 5679999999999
Q ss_pred CEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEE
Q 001176 850 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA 928 (1132)
Q Consensus 850 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 928 (1132)
+++++|+ +|.|++||+.+++....+.+|...|++++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++
T Consensus 974 ~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~ 1051 (1249)
T 3sfz_A 974 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFR 1051 (1249)
T ss_dssp SEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEE
T ss_pred CEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEE
Confidence 9999999 89999999999999999999999999999999 8999999999999999999998866 4568999999999
Q ss_pred EcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC-CCCceee
Q 001176 929 FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRS 1006 (1132)
Q Consensus 929 ~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~ 1006 (1132)
|+|++ .+++++.|++|++||+.+++.. ....+|. ..+.+++|+|+|+++++ +.|+.|++||+ ++..+..
T Consensus 1052 ~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~ 1122 (1249)
T 3sfz_A 1052 LLQDS-RLLSWSFDGTVKVWNVITGRIE-----RDFTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE 1122 (1249)
T ss_dssp ECSSS-EEEEEESSSEEEEEETTTTCCC-----EEEECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC
T ss_pred EcCCC-cEEEEECCCcEEEEECCCCcee-----EEEcccC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee
Confidence 99966 5788999999999999987743 2333444 57899999999999999 57999999999 5555544
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEE
Q 001176 1007 WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG 1086 (1132)
Q Consensus 1007 ~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 1086 (1132)
+ .+|...|++++|+|||++||+|+.||.|++||+.+++.+..+..... .....+|...+.+++|+| ++.+|+++
T Consensus 1123 l---~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~fs~-dg~~l~s~ 1196 (1249)
T 3sfz_A 1123 L---KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV--EEGTATHGGWVTDVCFSP-DSKTLVSA 1196 (1249)
T ss_dssp C---CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC---------CCSCCCEEEECT-TSSCEEEE
T ss_pred e---ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccc--cccccccCceEEEEEECC-CCCEEEEC
Confidence 4 45789999999999999999999999999999999998776532211 111246888999999999 88899888
Q ss_pred eCCCcEEEEecCCCcccc
Q 001176 1087 MSDGAVHVVEPSDAELKW 1104 (1132)
Q Consensus 1087 ~~Dg~i~vW~~~~~~~~~ 1104 (1132)
+ |.|++||+.+++...
T Consensus 1197 ~--g~v~vwd~~~g~~~~ 1212 (1249)
T 3sfz_A 1197 G--GYLKWWNVATGDSSQ 1212 (1249)
T ss_dssp S--SSEEEBCSSSCBCCC
T ss_pred C--CeEEEEECCCCceee
Confidence 5 999999999988543
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-55 Score=552.23 Aligned_cols=602 Identities=10% Similarity=0.059 Sum_probs=436.5
Q ss_pred EEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC
Q 001176 337 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 416 (1132)
Q Consensus 337 ~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 416 (1132)
...+.|.+.|++++|+|+|+ +||+|+.||+|+||+..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 33445899999999999998 79999999999999987765432 224788999999999
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE---------
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ--------- 487 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~--------- 487 (1132)
|++|++++.|++|++||+.+++.+. .+. |.+.|++++|+|+++ +|++|+.||.|++||+.+++..
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987665 343 678999999999999 8999999999999999998764
Q ss_pred --EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------------------CCeEEEEEEc
Q 001176 488 --YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------------------GNWCTMMAYS 547 (1132)
Q Consensus 488 --~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------------------~~~v~~~~~s 547 (1132)
..+.+|.++|.+++|+|.. +..+++|+.||.| +||+++.+....+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 2346799999999999853 3689999999999 9999988877776655 4679999999
Q ss_pred CCCCEEEEEecCCCCCCeEEEEeCCCCceeee--ec---cc------------cCCceEEEEEe----CCC-CEEEEEEc
Q 001176 548 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRT--YS---GF------------RKRSLGVVQFD----TTR-NRFLAAGD 605 (1132)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--~~---~~------------~~~~v~~~~~~----~~~-~~l~~~~~ 605 (1132)
|+|++|++++. |+.|++||+++++++.. +. .| ....|.+++|+ |++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999985 78899999999887653 21 22 12269999996 443 45666765
Q ss_pred C-----CeEEEEECC------------------CCeeEEEEeCCCCCCCcceEEEcC----------CCCEEEEEeCCCc
Q 001176 606 E-----FQIKFWDMD------------------NMNMLTTVDADGGLPASPRLRFNK----------EGSLLAVTTSDNG 652 (1132)
Q Consensus 606 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~ 652 (1132)
+ ..+.+|++. +.+....+... +...|..+.+.+ ++..+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899842 22233444321 123677777755 3447889999999
Q ss_pred EEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccc
Q 001176 653 IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 732 (1132)
Q Consensus 653 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1132)
|++|++.++.........+... . +... .
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l-~-----------------~~~~----------------------------------~ 403 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNL-S-----------------WLRP----------------------------------L 403 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGG-T-----------------TBTT----------------------------------B
T ss_pred EEEEECCCCCcccccccCCCcc-c-----------------ccCC----------------------------------C
Confidence 9999997763322221111100 0 0000 0
Q ss_pred cccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccc
Q 001176 733 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 812 (1132)
Q Consensus 733 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 812 (1132)
... +...+...++|+......... . .+-.+|...+.+++|+|+++.|++++.|++|++||+........
T Consensus 404 v~~-~~~s~~~~~~w~~~~~~~~~~--~--~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~------ 472 (902)
T 2oaj_A 404 ATT-SMAASVPNKLWLGALSAAQNK--D--YLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN------ 472 (902)
T ss_dssp EEE-EEEEEEEHHHHHHHHHTTBCC--C--CSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT------
T ss_pred eeE-EEEEEcCHHHHHHHHhcccCC--C--CcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC------
Confidence 000 000011123344221100000 0 11234667788899999999999999999999999865421100
Q ss_pred cccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCC-----------------------
Q 001176 813 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF----------------------- 868 (1132)
Q Consensus 813 ~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~----------------------- 868 (1132)
..+... +...+ +..| ...|.+++|+|||++||+|+ ||+|+|||+.++
T Consensus 473 ---~~~~~~----l~~~~-~~~h-~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (902)
T 2oaj_A 473 ---ASFEVN----LSRTL-NKAK-ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSL 543 (902)
T ss_dssp ---BCEEEE----HHHHT-TCSS-SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCG
T ss_pred ---ceEEee----chhhc-CCCC-CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccc
Confidence 000000 00000 1136 88999999999999999999 999999999865
Q ss_pred ----------------------eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeee-----eec-cc
Q 001176 869 ----------------------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-----KLK-GH 920 (1132)
Q Consensus 869 ----------------------~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~h 920 (1132)
+++.++.+|.+.|++++|+| +| +||+|+.|++|+|||+.++..+. .+. +|
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh 621 (902)
T 2oaj_A 544 NNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ 621 (902)
T ss_dssp GGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred cCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc
Confidence 34678889999999999999 88 99999999999999998876653 343 89
Q ss_pred cCCeeEEEEc-----CCC---CEEEEEcCCCcEEEEEC---CCcccccceeeeCCCCCCC--CCCCceeEE-EC------
Q 001176 921 QNRITGLAFS-----PTL---NALVSSGADAQLCMWSI---DKWEKLKSRFIQAPAGRQS--PLVGETKVQ-FH------ 980 (1132)
Q Consensus 921 ~~~V~~l~~s-----pdg---~~l~s~~~D~~i~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-~s------ 980 (1132)
.+.|++|+|+ ||| ++|++++.|++|++||+ .+++.... +.+|.. ....|..++ |+
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~~ 696 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ-----LMDITNVTSKGPIHKIDAFSKETKSS 696 (902)
T ss_dssp CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE-----EEEEEECCSSCCCCEEEEEETTTCCB
T ss_pred ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE-----ecCceecCCCCceEEEEeEecCCCCc
Confidence 9999999999 886 89999999999999999 66653221 112210 013455554 54
Q ss_pred ----------------CCCcEEEEEeCCeEEEEeC-CCCceeecCCCCCCCCCeEEE---E------EccCCCEEEEEec
Q 001176 981 ----------------NDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSA---I------YSCDGLLVYAGFC 1034 (1132)
Q Consensus 981 ----------------~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i---~------~s~dg~~las~~~ 1034 (1132)
++|..| ++.+..|++|++ ++++..... .|...+.++ . |+++|..|++++.
T Consensus 697 ~~a~~~~~~~l~~~~~~~~~~l-~~~~~~ir~~~~~~~k~~~k~~---~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 772 (902)
T 2oaj_A 697 CLATIPKMQNLSKGLCIPGIVL-ITGFDDIRLITLGKSKSTHKGF---KYPLAATGLSYISTVEKNNDRKNLTVIITLEI 772 (902)
T ss_dssp CBCBHHHHHGGGGTCCCCEEEE-EECSSEEEEECTTCCCEEEEEC---SSCEEEEEEEEEEEECSSSCEEEEEEEEEEET
T ss_pred ccCCHHHHhccCCCCCCCeEEE-EEeccceEEEeCccccceeeEc---ccceeeeEEEEEEeccccccccCceEEEEEeC
Confidence 455444 445889999999 667765542 234556665 6 7899999999999
Q ss_pred CCcEEEEeCCCcceecccCCCc
Q 001176 1035 DGAIGVFDAETLRFRCRIGPSA 1056 (1132)
Q Consensus 1035 dg~i~vwd~~~~~~~~~~~~~~ 1056 (1132)
||+|++|++.+++++..+....
T Consensus 773 ~g~i~~~s~p~l~~~~~~~~~~ 794 (902)
T 2oaj_A 773 NGHLRVFTIPDFKEQMSEHIPF 794 (902)
T ss_dssp TSEEEEEETTTCCEEEEEECSS
T ss_pred CCcEEEEECcchHHHhhccCCc
Confidence 9999999999999998876543
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.2e-55 Score=534.72 Aligned_cols=556 Identities=14% Similarity=0.183 Sum_probs=452.1
Q ss_pred ccCCcceeeecCCCCCCceecc------CCccc----ceEEeec-CCCC-eeEEEEcc--CCCeEEEEEcCCCcEEEEec
Q 001176 308 RTGQSDEVSFAGVAHTPNVYSQ------DDLTK----TVVRTLN-QGSN-VMSMDFHP--QQQTILLVGTNVGDISLWEV 373 (1132)
Q Consensus 308 ~~~~v~~~~~~~~g~~~~~~~~------d~~~~----~~~~~l~-h~~~-V~~~~~sp--dg~~lla~g~~dg~v~iwd~ 373 (1132)
+...+.+++|+|+|+.+++... +..++ +....+. |... |++++|+| +++ +|++|+.||.|+|||+
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGW 95 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeC
Confidence 3457889999999998877652 22344 6777777 9999 99999999 998 7999999999999999
Q ss_pred CCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC----CeEEEEEecCCCceeeeeeeecc
Q 001176 374 GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAH 449 (1132)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h 449 (1132)
.+++...... ......+.+|...|.+++|+|++++|++++.+ +.|++|| .++.+. .+.+|
T Consensus 96 ~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~ 159 (615)
T 1pgu_A 96 TFDKESNSVE-----------VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGH 159 (615)
T ss_dssp EEEGGGTEEE-----------EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSC
T ss_pred CCCccccccc-----------ccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecC
Confidence 7652110000 00011255799999999999999999999987 6888888 444333 67899
Q ss_pred cCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC---CeEEEEeeccCCccEEEEEecCCeEEEEEcC
Q 001176 450 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA---PVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526 (1132)
Q Consensus 450 ~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~---~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~ 526 (1132)
...|.+++|+|+++. ++++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ ++.+|++++.||.|++||++
T Consensus 160 ~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 160 SQRINACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp SSCEEEEEECSSSSC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETT
T ss_pred CccEEEEEECCCCCc-EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCC-CCCEEEEEeCCCeEEEEECC
Confidence 999999999999975 699999999999999999999999999999 9999999885 14899999999999999999
Q ss_pred CCCceEEe-c---CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc---CCceEEEEEeCCCCE
Q 001176 527 YLGSRVDY-D---APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR---KRSLGVVQFDTTRNR 599 (1132)
Q Consensus 527 ~~~~~~~~-~---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~ 599 (1132)
+++....+ . .|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...+.++.|. ++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 311 (615)
T 1pgu_A 238 SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA----DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGR 311 (615)
T ss_dssp TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET----TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTE
T ss_pred CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcC----CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCe
Confidence 98888887 5 788999999999 9999999975 7889999999999998888762 2257778786 8899
Q ss_pred EEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCC
Q 001176 600 FLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 679 (1132)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 679 (1132)
+++++.||.|++||+.+++.+..+..|.. .|.+++| |+ +++++.||.|++|++. .+. ..|...+..+
T Consensus 312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~--~v~~~~~-~~---l~~~~~dg~i~~w~~~----~~~--~~~~~~v~~~- 378 (615)
T 1pgu_A 312 IISLSLDGTLNFYELGHDEVLKTISGHNK--GITALTV-NP---LISGSYDGRIMEWSSS----SMH--QDHSNLIVSL- 378 (615)
T ss_dssp EEEEETTSCEEEEETTEEEEEEEECCCSS--CEEEEET-TT---TEEEETTSCEEETTTT----EEE--CCCCSCEEEE-
T ss_pred EEEEECCCCEEEEECCCCcEEEEEeCCCC--CEEEEEe-cC---cEEECCCCeEEEEEch----hhc--CcccCceEEE-
Confidence 99999999999999999999988887654 8999999 88 9999999999999986 122 3443332211
Q ss_pred CCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcce
Q 001176 680 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 759 (1132)
Q Consensus 680 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~ 759 (1132)
.+.++..++.++.++.+++|++......
T Consensus 379 ------------------------------------------------~~~~~~~l~~~~~d~~i~~~~~~~~~~~---- 406 (615)
T 1pgu_A 379 ------------------------------------------------DNSKAQEYSSISWDDTLKVNGITKHEFG---- 406 (615)
T ss_dssp ------------------------------------------------ECCSTTCCEEEETTTEEEETTEEEEECS----
T ss_pred ------------------------------------------------EECCCcEEEEEeCCCCEEEEEcccCccc----
Confidence 1112334455567799999998753221
Q ss_pred EEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCC
Q 001176 760 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 839 (1132)
Q Consensus 760 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~ 839 (1132)
..+..++++|++..++++ .++.+.+|+.. ++..+.. +. | ...
T Consensus 407 ----------~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~-~~---~-~~~ 448 (615)
T 1pgu_A 407 ----------SQPKVASANNDGFTAVLT-NDDDLLILQSF----------------------TGDIIKS-VR---L-NSP 448 (615)
T ss_dssp ----------SCEEEEEECSSSEEEEEE-TTSEEEEEETT----------------------TCCEEEE-EE---C-SSC
T ss_pred ----------CCceEEEEcCCCCEEEEe-CCCceEEEecc----------------------CCceeee-cc---c-CCC
Confidence 257889999999877776 78889998753 2222221 11 4 778
Q ss_pred eeEEEEeeCCCEEEEee--CCeEEEEECCCCeEE-EEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee
Q 001176 840 AACIALSKNDSYVMSAS--GGKVSLFNMMTFKVM-TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 916 (1132)
Q Consensus 840 v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 916 (1132)
+.+++|+ ++++++++ |+.|++||+.+++.. ..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+..
T Consensus 449 ~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~ 525 (615)
T 1pgu_A 449 GSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTS 525 (615)
T ss_dssp EEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred ceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCCcceeE
Confidence 9999999 88888887 799999999988766 67788999999999999 899999999999999999999999999
Q ss_pred ecc-ccCCeeEEEEcC----------CCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcE
Q 001176 917 LKG-HQNRITGLAFSP----------TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 985 (1132)
Q Consensus 917 l~~-h~~~V~~l~~sp----------dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 985 (1132)
+.+ |...|++++|+| ++++|++++.|+.|++||+.++.. .+.
T Consensus 526 ~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~----------------------- 578 (615)
T 1pgu_A 526 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK----IIK----------------------- 578 (615)
T ss_dssp CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC----CEE-----------------------
T ss_pred eecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCce----ech-----------------------
Confidence 988 999999999999 999999999999999999987521 111
Q ss_pred EEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 986 LLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 986 l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
. ..+|...|++++|+||++ |++++.||+|++|++++
T Consensus 579 --------------------~---~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 579 --------------------A---LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp --------------------E---TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred --------------------h---hhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 1 134578899999999999 99999999999999875
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-54 Score=546.46 Aligned_cols=587 Identities=11% Similarity=0.103 Sum_probs=429.0
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
..+|.+.|++++|+|++++||+|+.||+|+||+..+.+... . ..|..+|.+++|+| ++ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~---~-~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI---K-LEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE---E-CSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE---E-cCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 34799999999999999999999999999999988754332 2 35788999999999 77 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce-----------EEecCCCCeEEEEEEcCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-----------VDYDAPGNWCTMMAYSAD 549 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-----------~~~~~~~~~v~~~~~s~~ 549 (1132)
+.+++++..+. |...|++++|+|++ .+|++|+.||.|++||+++.... .....|.+.|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp~g--~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDASL--DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCTTC--SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECCCC--CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999998886 77899999998755 89999999999999999876643 123567789999999996
Q ss_pred C-CEEEEEecCCCCCCeEEEEeCCCCceeeeeccc-----------------cCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 001176 550 G-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF-----------------RKRSLGVVQFDTTRNRFLAAGDEFQIKF 611 (1132)
Q Consensus 550 ~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i 611 (1132)
+ ..+++++. ++.| +||+++++.+..+..+ +...|.+++|+|+|.+|++++.||.|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 67777753 7889 9999999998888765 1237999999999999999999999999
Q ss_pred EECCCCeeEEEEe-----CCC-----------CCCCcceEEEc----CCC-CEEEEEeCC-----CcEEEEEcCCcceee
Q 001176 612 WDMDNMNMLTTVD-----ADG-----------GLPASPRLRFN----KEG-SLLAVTTSD-----NGIKILANSDGVRLL 665 (1132)
Q Consensus 612 wd~~~~~~~~~~~-----~~~-----------~~~~v~~~~~s----~~~-~~l~~~~~d-----g~i~iw~~~~~~~~~ 665 (1132)
||+.+++++.... .+. +...|.+++|+ |++ .+|++|+.+ +.+.+|++..... .
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~-~ 316 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR-Y 316 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC-G
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC-c
Confidence 9999998876422 121 23368999995 443 567777665 3677887421100 0
Q ss_pred eeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCcee
Q 001176 666 RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 745 (1132)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 745 (1132)
. ..+.+....
T Consensus 317 ~----------------------------------------------------------------------~~s~~~~~~ 326 (902)
T 2oaj_A 317 S----------------------------------------------------------------------ITSYEGMKN 326 (902)
T ss_dssp G----------------------------------------------------------------------GCCHHHHHH
T ss_pred c----------------------------------------------------------------------ccchhhhhh
Confidence 0 000000001
Q ss_pred eeecCCCCCCCcceEEecCCcccccceEEEEEec----------CCceEEeecccceeEEEeeccccCCCC---------
Q 001176 746 SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN----------SGLSLLALASNAVHKLWKWQRTERNPS--------- 806 (1132)
Q Consensus 746 ~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----------~g~~l~~~~~dg~i~vw~~~~~~~~~~--------- 806 (1132)
+|+-. ...+.+.+ .+...|..+.+.+ +...+++++.||.+++|++........
T Consensus 327 ~~~~~-----~~~~~~~~---~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 327 YYANP-----KQMKIFPL---PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp HHHSC-----SEEEEECC---SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred hhcCc-----cceEEEec---CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccc
Confidence 11100 00011100 1345566676654 344688888999999999854321100
Q ss_pred C--cc-----ccccccccccCCC---cCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEE--EE
Q 001176 807 G--KA-----TANVAPQLWQPPS---GTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM--TM 873 (1132)
Q Consensus 807 ~--~~-----~~~~~~~l~~~~~---~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~--~~ 873 (1132)
+ .. .......+|+... +.. ...+.+ | ...+..++|+||+++||+|+ |++|++||+.++... ..
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~-~~~l~G--~-~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQNK-DYLLKG--G-VRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBCC-CCSCCC--S-BCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred ccCCCeeEEEEEEcCHHHHHHHHhcccCC-CCcccC--C-cCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCce
Confidence 0 00 0001112333110 111 112444 6 67788899999999999999 999999999887421 11
Q ss_pred e----e-----CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce--------------------------------
Q 001176 874 F----M-----SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-------------------------------- 912 (1132)
Q Consensus 874 ~----~-----~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-------------------------------- 912 (1132)
+ . +|...|++++|+| ++++||+|+.||+|+|||+.+++
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDV 553 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEEC
T ss_pred EEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccc
Confidence 1 1 7889999999999 99999999999999999998762
Q ss_pred -------------eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCC-CCCCCCCCceeEE
Q 001176 913 -------------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA-GRQSPLVGETKVQ 978 (1132)
Q Consensus 913 -------------~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 978 (1132)
++..+.+|.+.|++|+||||| +||+|+.|++|++||+.+...+....+.... +|. ..|++++
T Consensus 554 ~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~ 629 (902)
T 2oaj_A 554 RDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIE 629 (902)
T ss_dssp GGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEE
T ss_pred cccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEE
Confidence 367788999999999999999 9999999999999999886643221223343 665 6899999
Q ss_pred EC-----CCC---cEEEE-EeCCeEEEEeC----CCCceeecCCCC--CCCCCeEEEE-Ec-------------------
Q 001176 979 FH-----NDQ---THLLV-VHESQISVYDS----KLECSRSWSPKD--ALPAPISSAI-YS------------------- 1023 (1132)
Q Consensus 979 ~s-----~dg---~~l~~-~~d~~v~vwd~----~~~~~~~~~~~~--~h~~~i~~i~-~s------------------- 1023 (1132)
|+ ||| ++|++ +.|++|++||+ ++++...+.... .|.++|.+++ |+
T Consensus 630 Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~ 709 (902)
T 2oaj_A 630 FVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSK 709 (902)
T ss_dssp EEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGG
T ss_pred EEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCC
Confidence 99 886 78888 57999999998 555555543321 2357787777 66
Q ss_pred ---cCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEE---E------eCCCCCCeEEEEeCCCc
Q 001176 1024 ---CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVI---A------PHPSEPNQIALGMSDGA 1091 (1132)
Q Consensus 1024 ---~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~------~~p~~~~~l~s~~~Dg~ 1091 (1132)
++|.+|+++ +..|+||++.+++...... .|...+..+ . |++ ++..|++.+.||+
T Consensus 710 ~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~-----------~~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~ 775 (902)
T 2oaj_A 710 GLCIPGIVLITG--FDDIRLITLGKSKSTHKGF-----------KYPLAATGLSYISTVEKNNDRK-NLTVIITLEINGH 775 (902)
T ss_dssp TCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC-----------SSCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSE
T ss_pred CCCCCeEEEEEe--ccceEEEeCccccceeeEc-----------ccceeeeEEEEEEecccccccc-CceEEEEEeCCCc
Confidence 456555554 7899999999998875542 344445554 4 566 7789999999999
Q ss_pred EEEEecCCCcccc
Q 001176 1092 VHVVEPSDAELKW 1104 (1132)
Q Consensus 1092 i~vW~~~~~~~~~ 1104 (1132)
|++|++.+.+...
T Consensus 776 i~~~s~p~l~~~~ 788 (902)
T 2oaj_A 776 LRVFTIPDFKEQM 788 (902)
T ss_dssp EEEEETTTCCEEE
T ss_pred EEEEECcchHHHh
Confidence 9999999998443
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.1e-47 Score=484.70 Aligned_cols=566 Identities=15% Similarity=0.222 Sum_probs=420.4
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
..+++. |.+.|++++|||+|+ +||+|+.||.|+|||+.+++.+.. +.+|.+.|.+++|+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s 64 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred cceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEe
Confidence 455666 999999999999998 689999999999999999876653 56799999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEecCC
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGH 493 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h 493 (1132)
|++++|++|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.||.|++||+.++ .....+.+|
T Consensus 65 ~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 139 (814)
T 3mkq_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (814)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCC
Confidence 999999999999999999999987665 5778999999999999999 8999999999999999987 777888999
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CeEEEEEEcC--CCCEEEEEecCCCCCCeEEEEe
Q 001176 494 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
...|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||
T Consensus 140 ~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d 214 (814)
T 3mkq_A 140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWD 214 (814)
T ss_dssp SSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEE
T ss_pred CCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEE
Confidence 999999999883 33799999999999999998888777666555 7899999999 9999999974 78899999
Q ss_pred CCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCE-EEEEeC
Q 001176 571 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL-LAVTTS 649 (1132)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~ 649 (1132)
+.+++.+..+.+|.. .|.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++.. +++++.
T Consensus 215 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEEE
T ss_pred CCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEEe
Confidence 999999999998877 899999999999999999999999999999999998887644 8999999999873 244455
Q ss_pred CCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccc
Q 001176 650 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 729 (1132)
Q Consensus 650 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1132)
++.+.+|++..+.
T Consensus 292 ~~~~~~~~~~~~~------------------------------------------------------------------- 304 (814)
T 3mkq_A 292 DNGFTVLSLGNDE------------------------------------------------------------------- 304 (814)
T ss_dssp TTEEEEEECSCCS-------------------------------------------------------------------
T ss_pred CCCEEEEEcCCCC-------------------------------------------------------------------
Confidence 6678888865441
Q ss_pred ccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeeccccee-EEEeeccccCCCCCc
Q 001176 730 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH-KLWKWQRTERNPSGK 808 (1132)
Q Consensus 730 ~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i-~vw~~~~~~~~~~~~ 808 (1132)
..+.++|+|+.+++++.+... .++...
T Consensus 305 -------------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------- 332 (814)
T 3mkq_A 305 -------------------------------------------PTLSLDPVGKLVWSGGKNAAASDIFTAV--------- 332 (814)
T ss_dssp -------------------------------------------CCEEECSSSEEEEECCTTSCTTCEEEEE---------
T ss_pred -------------------------------------------ceeEECCCCCEEEECcccccceeeeeee---------
Confidence 112344455544444333210 000000
Q ss_pred cccccccccccCCCcCcccccCC-CCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEe
Q 001176 809 ATANVAPQLWQPPSGTLMTNDIN-ESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFH 887 (1132)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~~~~-~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s 887 (1132)
....|+...+........ ...+ ...+.+++|+|||+++++++++.+.+|++...... +.+.+.+++|+
T Consensus 333 -----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~-----~~~~i~~~~~s 401 (814)
T 3mkq_A 333 -----IRGNEEVEQDEPLSLQTKELGSV-DVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNK-----AFGKCQDFVWG 401 (814)
T ss_dssp -----CCSCCCCCSSSCBCCCCEEECCC-SSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEE-----EEEECSEEEEC
T ss_pred -----cccccccccCccceeeeecCCCC-ccCCceeEECCCCCEEEEecCCEEEEEECcccccc-----CCCceEEEEEe
Confidence 000122222222111110 0113 66789999999999999999999999998765432 24568899999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCC---CEEEEEcCCCcEEEEECCCcccccceeeeCC
Q 001176 888 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL---NALVSSGADAQLCMWSIDKWEKLKSRFIQAP 964 (1132)
Q Consensus 888 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg---~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 964 (1132)
| +++++|+++.+|.|++|+ .+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++. +...
T Consensus 402 p-dg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~-----~~~~ 467 (814)
T 3mkq_A 402 P-DSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTL-----VRRI 467 (814)
T ss_dssp T-TSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCE-----EEEE
T ss_pred C-CCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcE-----EEEE
Confidence 9 899999999999999995 345688889999999998 6899999999999999998763 3333
Q ss_pred CCCCCCCCCceeEEECCCCcEEEEE------eCCeEEEEeCCC-Cceee-----cCCCCCC----------CCCeEEEEE
Q 001176 965 AGRQSPLVGETKVQFHNDQTHLLVV------HESQISVYDSKL-ECSRS-----WSPKDAL----------PAPISSAIY 1022 (1132)
Q Consensus 965 ~~~~~~~~~v~~~~~s~dg~~l~~~------~d~~v~vwd~~~-~~~~~-----~~~~~~h----------~~~i~~i~~ 1022 (1132)
..+. ..++|+|||++|+++ .+..+.++.... ..... .....+. ...|.+..|
T Consensus 468 ~~~~------~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w 541 (814)
T 3mkq_A 468 DVNA------KDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKW 541 (814)
T ss_dssp SSCE------EEEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEE
T ss_pred ecCC------CEEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEE
Confidence 4332 389999999999997 555555553211 00000 0000000 122334444
Q ss_pred ccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1023 SCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1023 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
++.+.+|....+.......... .........+..+.|.+ ++..++....++.++.|++...+
T Consensus 542 ------------~~~~~i~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~~l~~~~ 603 (814)
T 3mkq_A 542 ------------VGDVFIFTTATNRLNYFVGGKT----YNLAHYTKEMYLLGYLA-RDNKVYLADREVHVYGYEISLEV 603 (814)
T ss_dssp ------------ETTEEEEECTTSEEEEEETTEE----EEEEECSSCCEEEEEEG-GGTEEEEECTTCCEEEEECCHHH
T ss_pred ------------eCCEEEEEcCCCeEEEEeCCee----EEEEECCccEEEEEEEe-cCCEEEEEcCCCCEEEEEECcHH
Confidence 3444455443222211111000 00111223444566666 67788888899999999986544
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2e-45 Score=466.52 Aligned_cols=466 Identities=15% Similarity=0.186 Sum_probs=380.1
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|.+.|.+++|+|||++||+|+.||.|+|||+.+++.+. .+.+|.++|.+++|+|+++ +|++|+.||.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999987555 5778999999999999999 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCeEEEEEEcC-CCCEEEEEec
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 558 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 558 (1132)
+.+++.+..+.+|...|.+++|+|++ .+|++++.||.|++||+++. .....+..|...|.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCC--CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999998855 89999999999999999987 45567788999999999999 8889999875
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC--CCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
++.|++||+.++.....+..+....+.+++|+| ++.++++++.||.|++||+.+++.+..+..|.. .|.+++
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~~ 235 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAV 235 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEEE
Confidence 788999999998888888877755899999999 999999999999999999999999999887754 799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCC
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 716 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 716 (1132)
|+|+++++++++.||.|++||+.++ +....+..
T Consensus 236 ~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~---------------------------------------------- 268 (814)
T 3mkq_A 236 FHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNV---------------------------------------------- 268 (814)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC-SEEEEECC----------------------------------------------
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeec----------------------------------------------
Confidence 9999999999999999999999876 33332221
Q ss_pred cccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceE-EeecccceeEE
Q 001176 717 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSL-LALASNAVHKL 795 (1132)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~~dg~i~v 795 (1132)
+...+.+++|+|+|..+ ++.+.++.+.+
T Consensus 269 ---------------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 297 (814)
T 3mkq_A 269 ---------------------------------------------------GLERSWCIATHPTGRKNYIASGFDNGFTV 297 (814)
T ss_dssp ---------------------------------------------------SSSSEEEEEECTTCGGGEEEEEETTEEEE
T ss_pred ---------------------------------------------------CCCcEEEEEEccCCCceEEEEEeCCCEEE
Confidence 34568899999998754 66677777888
Q ss_pred EeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CC---eEEE------EEC
Q 001176 796 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG---KVSL------FNM 865 (1132)
Q Consensus 796 w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg---~i~v------wd~ 865 (1132)
|++. .....++++|+|+.+++++ +. .+.. |++
T Consensus 298 ~~~~--------------------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (814)
T 3mkq_A 298 LSLG--------------------------------------NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEV 339 (814)
T ss_dssp EECS--------------------------------------CCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCC
T ss_pred EEcC--------------------------------------CCCceeEECCCCCEEEECcccccceeeeeeeccccccc
Confidence 8642 2234578899999999876 32 1222 233
Q ss_pred CCCeE----EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcC
Q 001176 866 MTFKV----MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 941 (1132)
Q Consensus 866 ~~~~~----~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~ 941 (1132)
..+.. ...+..+...+.+++|+| +++++++++ ||.+.+|++...... +.+.|.+++|+|+++++++++.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~ 412 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDE 412 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECT
T ss_pred ccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeC
Confidence 33322 233455667788899999 888888887 788899987544322 3456788888888888888888
Q ss_pred CCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEE
Q 001176 942 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAI 1021 (1132)
Q Consensus 942 D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~ 1021 (1132)
|+.|++|+.-. +|...+.+++
T Consensus 413 ~g~v~l~~~~~-----------------------------------------------------------~~~~~v~~~~ 433 (814)
T 3mkq_A 413 TGQIKYYKNFK-----------------------------------------------------------EVTSWSVPMH 433 (814)
T ss_dssp TCCEEEEETTE-----------------------------------------------------------ECTTCCCCCS
T ss_pred CCcEEEEECCC-----------------------------------------------------------CccceEEcCC
Confidence 88888885221 1244566777
Q ss_pred EccCC---CEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEE------eCCCcE
Q 001176 1022 YSCDG---LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG------MSDGAV 1092 (1132)
Q Consensus 1022 ~s~dg---~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~------~~Dg~i 1092 (1132)
|+||| ++|++++.||.|++||+.+++.+..+. .|.. .+.|+| ++++|+++ +.|..+
T Consensus 434 ~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-----------~~~~---~v~~s~-dg~~la~~~~~~~~~~~~~~ 498 (814)
T 3mkq_A 434 SAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRID-----------VNAK---DVIWSD-NGELVMIVNTNSNGDEASGY 498 (814)
T ss_dssp SCCCEEECSSSEEEEETTEEEEECTTTCCEEEEES-----------SCEE---EEEECT-TSSEEEEEECCCSSCSCSEE
T ss_pred cCccceecceEEEEecCCEEEEEECCcCcEEEEEe-----------cCCC---EEEEcC-CCCEEEEEEcCcccCCceEE
Confidence 88887 678889999999999999999887775 2322 899999 88999999 666666
Q ss_pred EEEe
Q 001176 1093 HVVE 1096 (1132)
Q Consensus 1093 ~vW~ 1096 (1132)
.+|.
T Consensus 499 ~~~~ 502 (814)
T 3mkq_A 499 TLLF 502 (814)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5654
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.8e-44 Score=413.88 Aligned_cols=283 Identities=20% Similarity=0.359 Sum_probs=263.4
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
|.+.|++++|+|+++ ++++|+.||+|+|||+.+++.... +.+|.+.|.+++|+|+|++|+
T Consensus 107 h~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~~~~l~ 166 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKLLA 166 (410)
T ss_dssp CSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred cCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCCCCEEE
Confidence 788999999999998 799999999999999999876553 678999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 501 (1132)
+|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||+.++.++.++.+|...|.+++
T Consensus 167 sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp EEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence 99999999999999887655 6789999999999999999 899999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCC--------------------CCEEEEEecCCC
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD--------------------GTRLFSCGTSKE 561 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~~~~ 561 (1132)
++++ +.++++++.|++|++||+.+......+..|...|.+++|+|+ |.+|++++.
T Consensus 242 ~~~~--g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~--- 316 (410)
T 1vyh_C 242 PNQD--GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR--- 316 (410)
T ss_dssp ECTT--SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET---
T ss_pred ECCC--CCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC---
Confidence 9774 489999999999999999999998899999999999999996 678999875
Q ss_pred CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCC
Q 001176 562 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 641 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1132)
|+.|++||+++++++..+.+|.. .|.+++|+|++++|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|++
T Consensus 317 -D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~ 392 (410)
T 1vyh_C 317 -DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTA 392 (410)
T ss_dssp -TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSS
T ss_pred -CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCCC
Confidence 78899999999999999999887 899999999999999999999999999999999999987755 79999999999
Q ss_pred CEEEEEeCCCcEEEEEc
Q 001176 642 SLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 642 ~~l~~~~~dg~i~iw~~ 658 (1132)
.+|++|+.||+|++|+.
T Consensus 393 ~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEETTSEEEEEC-
T ss_pred CEEEEEeCCCcEEEEeC
Confidence 99999999999999985
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.1e-39 Score=361.06 Aligned_cols=294 Identities=19% Similarity=0.311 Sum_probs=263.9
Q ss_pred ccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 333 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 333 ~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
......++. |.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~ 103 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTC 103 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEE
Confidence 345567777 999999999999998 799999999999999998876543 45689999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCc-eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 490 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 490 (1132)
+|+|+|++|++|+.|+.|++|++.++.. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+
T Consensus 104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEE
Confidence 9999999999999999999999987642 233446789999999999999875 889999999999999999999999
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
.+|...|.+++|+|++ .++++|+.|+.|++||++++.....+..|...|.+++|+|++++|++++. |+.|++||
T Consensus 181 ~~h~~~v~~~~~~~~~--~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd 254 (340)
T 1got_B 181 TGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFD 254 (340)
T ss_dssp CCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCceEEEEECCCC--CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEE
Confidence 9999999999998854 89999999999999999999999999999999999999999999999985 78899999
Q ss_pred CCCCceeeeecccc-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC
Q 001176 571 ESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 571 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
+++++.+..+.... ...|.+++|+|+++++++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|+|.+|++|+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~ 332 (340)
T 1got_B 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcC
Confidence 99988877765332 22689999999999999999999999999999999999987754 8999999999999999999
Q ss_pred CCcEEEEE
Q 001176 650 DNGIKILA 657 (1132)
Q Consensus 650 dg~i~iw~ 657 (1132)
||.|++||
T Consensus 333 D~~i~iWd 340 (340)
T 1got_B 333 DSFLKIWN 340 (340)
T ss_dssp TSCEEEEC
T ss_pred CccEEecC
Confidence 99999996
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=360.18 Aligned_cols=293 Identities=14% Similarity=0.210 Sum_probs=263.8
Q ss_pred cceEEeec-CCCCeeEEEEccC----CCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCe
Q 001176 334 KTVVRTLN-QGSNVMSMDFHPQ----QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 408 (1132)
Q Consensus 334 ~~~~~~l~-h~~~V~~~~~spd----g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 408 (1132)
+...+.+. |.+.|++++|+|+ ++ +|++|+.|++|+||++.+++.... ..+.+|...|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v 83 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGV 83 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCE
Confidence 44455665 9999999999985 44 799999999999999987643211 1267899999
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE
Q 001176 409 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 488 (1132)
Q Consensus 409 ~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~ 488 (1132)
.+++|++++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++||+++++...
T Consensus 84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeE
Confidence 999999999999999999999999999987655 5678888999999999999 89999999999999999999999
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
.+..|...|.+++|+|++ .+|++++.||.|++||+++++....+..|...|.+++|+|++++|++++. ++.|++
T Consensus 159 ~~~~~~~~v~~~~~spdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~i 232 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSPDG--KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKI 232 (321)
T ss_dssp EEECSSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEE
T ss_pred EecCCCceEEEEEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEE
Confidence 999999999999998754 89999999999999999999888899999999999999999999999975 788999
Q ss_pred EeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe
Q 001176 569 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 648 (1132)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1132)
||+++++....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.+++++..+..|.. .|.+++|+|++++|++++
T Consensus 233 wd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 233 YDVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp EETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEE
T ss_pred EECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEe
Confidence 99999999999999887 899999999999999999999999999999999999987654 899999999999999999
Q ss_pred CCCcEEEEEc
Q 001176 649 SDNGIKILAN 658 (1132)
Q Consensus 649 ~dg~i~iw~~ 658 (1132)
.||.|++||.
T Consensus 310 ~d~~i~vwd~ 319 (321)
T 3ow8_A 310 DDQEIHIYDC 319 (321)
T ss_dssp TTCCEEEEEC
T ss_pred CCCeEEEEeC
Confidence 9999999996
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5e-39 Score=361.99 Aligned_cols=295 Identities=17% Similarity=0.277 Sum_probs=263.8
Q ss_pred ceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 335 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 335 ~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
....++. |.+.|++++|+|+++ +|++|+.||+|+|||..+++.... +..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEE
Confidence 4566777 999999999999998 699999999999999988776542 4458889999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEecCCCc---eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe
Q 001176 414 GPDGLMLGVAFSKHIVHLYTYNPTGE---LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 490 (1132)
Q Consensus 414 spdg~~las~~~dg~i~iwd~~~~~~---~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 490 (1132)
+|+|++||+|+.|+.+++|++..... ......+.+|.+.|.+++|+|++. .|++++.|++|++||+++++.+..+
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999999999875421 122335678999999999999998 8999999999999999999999999
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
.+|...|.+++++|..++.+|++|+.||+|++||++++.....+..|...|.+++|+|++++|++++. |+.|++||
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd 268 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYD 268 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEE
Confidence 99999999999998877899999999999999999999999899999999999999999999999985 78899999
Q ss_pred CCCCceeeeecccc-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC
Q 001176 571 ESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 571 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
+++++.+..+..+. ...+.+++|+|++.++++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|+|++|++|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcC
Confidence 99988777665432 22688999999999999999999999999999999988887754 8999999999999999999
Q ss_pred CCcEEEEE
Q 001176 650 DNGIKILA 657 (1132)
Q Consensus 650 dg~i~iw~ 657 (1132)
||+|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999995
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-38 Score=350.01 Aligned_cols=292 Identities=17% Similarity=0.306 Sum_probs=255.8
Q ss_pred ceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 335 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 335 ~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
+..+++. |.+.|++++|+|+|+ +|++|+.||+|+|||+.++..+.. +..|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 4456777 999999999999998 699999999999999998876543 5679999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEecC
Q 001176 414 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEG 492 (1132)
Q Consensus 414 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~ 492 (1132)
+|++++|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++||++++ .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999988665 6789999999999999999 8999999999999999987 55678899
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCeEEEEEEcC--CCCEEEEEecCCCCCCeEEEE
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEW 569 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~w 569 (1132)
|...|.+++|+|. ++.+|++|+.|++|++||++.......+. .+...+..+.|+| ++++|++++. |+.|++|
T Consensus 139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 9999999999884 33799999999999999998877666554 4557899999986 7789999985 8889999
Q ss_pred eCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCC--EEEEE
Q 001176 570 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVT 647 (1132)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~ 647 (1132)
|+++++++..+.+|.. .|.+++|+|++++|++|+.||.|++||..+++.+..+..+.. .+.+++|+|++. ++++|
T Consensus 214 d~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~asg 290 (304)
T 2ynn_A 214 DYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASG 290 (304)
T ss_dssp ETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEEEE
T ss_pred eCCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEEEe
Confidence 9999999999999987 899999999999999999999999999999999999986643 789999999775 57777
Q ss_pred eCCCcEEEEEcCC
Q 001176 648 TSDNGIKILANSD 660 (1132)
Q Consensus 648 ~~dg~i~iw~~~~ 660 (1132)
+.| .+.+|++.+
T Consensus 291 ~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 291 FDN-GFTVLSLGN 302 (304)
T ss_dssp ETT-EEEEEECC-
T ss_pred cCC-ceEEEEecc
Confidence 655 567777654
No 18
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.3e-39 Score=366.88 Aligned_cols=305 Identities=17% Similarity=0.284 Sum_probs=264.0
Q ss_pred CcccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeE
Q 001176 331 DLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 409 (1132)
Q Consensus 331 ~~~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 409 (1132)
.....+.+++. |.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.... +.+|...|.
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~ 112 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVM 112 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCC
T ss_pred cceeEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEE
Confidence 34456778888 999999999999998 699999999999999998876543 567999999
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEecCCCc----eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001176 410 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 485 (1132)
Q Consensus 410 ~v~~spdg~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~ 485 (1132)
+++|+|+|++||+|+.|+.+++|++.+... ......+.+|.+.|.++.|+|++.. .|++|+.|++|++||+.+++
T Consensus 113 ~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~ 191 (380)
T 3iz6_a 113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQ 191 (380)
T ss_dssp CCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCC
T ss_pred EEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCc
Confidence 999999999999999999999999975321 1122357799999999999998654 69999999999999999999
Q ss_pred EEEEe-----cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 486 KQYTF-----EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 486 ~~~~~-----~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
.+..+ .+|...|.++++++. ++.++++|+.|++|++||++. ......+.+|...|.+++|+|++++|++++.
T Consensus 192 ~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~- 269 (380)
T 3iz6_a 192 RISIFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD- 269 (380)
T ss_dssp EEEEECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS-
T ss_pred EEEEeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC-
Confidence 98887 679999999999764 448999999999999999984 4667788899999999999999999999975
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccC------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeC--CCCCCC
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA--DGGLPA 631 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~ 631 (1132)
|+.|++||+++++.+..+..+.. ..+.+++|+|+|+++++|+.||.|++||..+++.+..+.. ..+...
T Consensus 270 ---D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~ 346 (380)
T 3iz6_a 270 ---DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR 346 (380)
T ss_dssp ---SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCC
T ss_pred ---CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCc
Confidence 78899999999998888765432 1488999999999999999999999999999988877732 234558
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 632 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|.+++|+|+|.+|++|+.||+|++|++...
T Consensus 347 v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 347 ISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred eEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999999998765
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-38 Score=365.16 Aligned_cols=247 Identities=21% Similarity=0.353 Sum_probs=231.5
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|.++|++++|+|++++|++|+.||+|++||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 45799999999999999999999999999999999987665 6889999999999999999 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+.+++++.++.+|...|.+++|+|++ .+|++++.|++|++||++++.....+..|...|.+++++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~--~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNG--DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 99999999999999999999998854 89999999999999999999999999999999999999999999999985
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCC--------------------CCEEEEEEcCCeEEEEECCCCeeE
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--------------------RNRFLAAGDEFQIKFWDMDNMNML 620 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1132)
|+.|++||+.+++....+.+|.. .|.+++|+|+ +.++++|+.|+.|++||+.++.++
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred --CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 78899999999999999998887 8999999996 678999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 621 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
..+..|.. .|.+++|+|+|++|++|+.||.|++||+.++
T Consensus 332 ~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 332 MTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp EEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred EEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 99987754 7999999999999999999999999998776
No 20
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.2e-38 Score=350.15 Aligned_cols=301 Identities=20% Similarity=0.266 Sum_probs=258.3
Q ss_pred cceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEE
Q 001176 334 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 412 (1132)
Q Consensus 334 ~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 412 (1132)
..+..+|. |.+.|++++|+|++..+|++|+.|++|++|++........ .....+.+|...|.+++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~ 72 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------------VPVRSFKGHSHIVQDCT 72 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------------EEEEEEECCSSCEEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------------ccceEEeCCcccEEEEE
Confidence 34566777 9999999999998745899999999999999875432211 01112678999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC
Q 001176 413 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 492 (1132)
Q Consensus 413 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 492 (1132)
|+|+|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||+. ++++..+.+
T Consensus 73 ~s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~ 146 (319)
T 3frx_A 73 LTADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLG 146 (319)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEec
Confidence 99999999999999999999999987654 6789999999999999999 89999999999999985 567788999
Q ss_pred CCCCeEEEEeeccC----CccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 493 HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 493 h~~~v~~i~~~~~~----~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
|...|.++++.|.. ++..+++++.|+.|++||++.......+.+|...|.+++|+|+|++|++++. |+.|++
T Consensus 147 h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~i 222 (319)
T 3frx_A 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIML 222 (319)
T ss_dssp CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEE
T ss_pred cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEE
Confidence 99999999998753 3458999999999999999998888889999999999999999999999985 888999
Q ss_pred EeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC------CCCCcceEEEcCCCC
Q 001176 569 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG------GLPASPRLRFNKEGS 642 (1132)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~ 642 (1132)
||+.+++.+..+..+. .+.+++|+|++.++++++. +.+++|++.....+..+..+. +...+.+++|+|||+
T Consensus 223 wd~~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 299 (319)
T 3frx_A 223 WNLAAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299 (319)
T ss_dssp EETTTTEEEEEEECCS--CEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS
T ss_pred EECCCCcEEEEecCCC--cEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC
Confidence 9999999998887653 7999999999998888764 569999999888777765331 234578999999999
Q ss_pred EEEEEeCCCcEEEEEcCCc
Q 001176 643 LLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~ 661 (1132)
+|++|+.||.|++|++.++
T Consensus 300 ~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 300 TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTSCEEEEEEEEC
T ss_pred EEEEeecCceEEEEEEeec
Confidence 9999999999999998764
No 21
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.6e-38 Score=347.85 Aligned_cols=288 Identities=15% Similarity=0.280 Sum_probs=259.2
Q ss_pred cCCCCcCeEEEEEcCC----CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcE
Q 001176 401 LNDAAISVNRCVWGPD----GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spd----g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v 476 (1132)
+.+|.+.|.+++|+|+ +++|++|+.|++|+||++.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 4679999999999985 67999999999999999987643 23346889999999999999999 89999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 477 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
++||+.+++.+..+..|...+.+++|+|++ .+|++++.||.|++||++++.....+..+...+.+++|+|++++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDS--QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTS--SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCC--CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 999999999999999999999999998754 899999999999999999999988888899999999999999999999
Q ss_pred ecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 557 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
+. ++.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.|+.|++||+.+++....+..|.. .|.+++
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~ 255 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS--WVLNVA 255 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS--CEEEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC--ceEEEE
Confidence 85 77899999999999999999887 899999999999999999999999999999999988887754 799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCC
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 716 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 716 (1132)
|+|++.+|++++.|++|++||+.++ +....+.+
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~---------------------------------------------- 288 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTFFD---------------------------------------------- 288 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTT-EEEEEECC----------------------------------------------
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEcC----------------------------------------------
Confidence 9999999999999999999999887 44443332
Q ss_pred cccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEE
Q 001176 717 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 796 (1132)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw 796 (1132)
|...|.+++|+|+++.|++++.||.|++|
T Consensus 289 ---------------------------------------------------h~~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 289 ---------------------------------------------------HQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp ---------------------------------------------------CSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ---------------------------------------------------CCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 45678999999999999999999999999
Q ss_pred ee
Q 001176 797 KW 798 (1132)
Q Consensus 797 ~~ 798 (1132)
|.
T Consensus 318 d~ 319 (321)
T 3ow8_A 318 DC 319 (321)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.8e-38 Score=350.82 Aligned_cols=303 Identities=17% Similarity=0.241 Sum_probs=250.0
Q ss_pred cceEEeec-CCC-CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 334 KTVVRTLN-QGS-NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 334 ~~~~~~l~-h~~-~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
..++.++. |.+ .|++++|||+|+ +||+|+.|++|+|||+.++..... .....+|...|.++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~ 67 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKV 67 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEE
Confidence 35677777 777 999999999998 699999999999999987753321 01146899999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC---eEEE
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQY 488 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~---~~~~ 488 (1132)
+|+|+|++||+|+.|++|++|++..+.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++ +++.
T Consensus 68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 68 AWSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEE
Confidence 9999999999999999999999987642 23446889999999999999999 8999999999999999876 3467
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 566 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1132)
.+.+|...|.+++|+|++ .+|++++.|++|++||.+.... ...+.+|...|.+++|+|+|++|++++. |+.|
T Consensus 145 ~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v 218 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTV 218 (345)
T ss_dssp EECCCCSCEEEEEECSSS--SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EecCcCCCeEEEEECCCC--CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeE
Confidence 788999999999998865 8999999999999999987653 4577889999999999999999999985 7889
Q ss_pred EEEeCCCC---------------ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe----eEEE---Ee
Q 001176 567 VEWNESEG---------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTT---VD 624 (1132)
Q Consensus 567 ~~wd~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~---~~ 624 (1132)
++||.... +++..+.+.+...|.+++|+|++..+++++.|+.|++|+...+. .... ..
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee
Confidence 99996321 23445566444489999999999999999999999999987542 1111 11
Q ss_pred CCCCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCcc
Q 001176 625 ADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 625 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
...+...|++++|+|++ .+|++|+.||+|++|++.+++
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 22345589999999987 599999999999999998874
No 23
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.7e-37 Score=347.97 Aligned_cols=248 Identities=16% Similarity=0.245 Sum_probs=227.7
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|.+.|.+++|+||+++|++|+.||+|++||+.++..+. .+..|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999887655 5778999999999999999 899999999999999
Q ss_pred CCCC----eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 481 VVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 481 ~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
+.++ +....+.+|...|.++.|+++ ..+++++.|++|++||+.++.....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9875 456778899999999999865 359999999999999999999888999999999999999999999999
Q ss_pred ecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 557 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
+. |+.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+++++.+..+..+.....|.+++
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 85 78899999999999999999887 89999999999999999999999999999999888876555445799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|+|+|++|++|+.||.|++||+.++
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ECCCCCEEEEECCCCeEEEEEcccC
Confidence 9999999999999999999998776
No 24
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.7e-38 Score=350.11 Aligned_cols=297 Identities=13% Similarity=0.122 Sum_probs=239.8
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccc-cccccccCCCCcCeEEEEEcCCCCeE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM-PLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
|...|.+++|||||+ +|++++ |+++++||.... +|+...... .........|...|.+++|+||+ .|
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 556799999999998 677776 788888874311 111000000 00001123467789999999985 68
Q ss_pred EEEeCCCeEEEEEecCCCceeee-eeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEE
Q 001176 421 GVAFSKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 499 (1132)
Q Consensus 421 as~~~dg~i~iwd~~~~~~~~~~-~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 499 (1132)
++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++..+.+|...|.+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998765432 34568999999999999999 8999999999999999999999999999999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCeEEEEEEcCCC-CEEEEEecCCCCCCeEEEEeCCCCce
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAI 576 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1132)
++|++++. .+|++++.|++|++||+++++....+. .+...+.+++|+|++ +++++++. ++.|++||++++++
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTSC 249 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--C
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCcE
Confidence 99988653 588999999999999999988877654 345579999999954 56777764 78899999999999
Q ss_pred eeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCC-EEEEEeCCCcEE
Q 001176 577 KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIK 654 (1132)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~ 654 (1132)
+..+.+|.. .|.+++|+|++ ++|++|+.|+.|++||+.+++.+. +..| ...|++++|+|++. +|++++.|++|+
T Consensus 250 ~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 250 VLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 999999987 89999999998 578899999999999999987654 4555 45899999999886 577899999999
Q ss_pred EEEcCCc
Q 001176 655 ILANSDG 661 (1132)
Q Consensus 655 iw~~~~~ 661 (1132)
+|++.+.
T Consensus 326 ~w~v~~~ 332 (344)
T 4gqb_B 326 HHVVPTE 332 (344)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 9999765
No 25
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3e-38 Score=355.80 Aligned_cols=292 Identities=13% Similarity=0.138 Sum_probs=239.1
Q ss_pred CCCCeeEEEEccCCCeEEEEEcC------CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
|...|++++|||||+ +||+|+. |+.|++|+..++....... ....+|...|.+++|+|
T Consensus 41 H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~---------------~~~~~~~~~V~~~~~s~ 104 (357)
T 4g56_B 41 MEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLC---------------TAGVQTEAGVTDVAWVS 104 (357)
T ss_dssp CCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGC---------------SEEEECSSCEEEEEEET
T ss_pred ccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEe---------------cccCCCCCCEEEEEEcC
Confidence 888999999999998 6889887 6789999887775433211 01346889999999999
Q ss_pred CCCeEEEEeCCCeEEEEEecCCCceee-eeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCC
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 494 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~~~~~-~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~ 494 (1132)
+++++ +++.||+|+|||+.+++.... .....+|...|++++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|.
T Consensus 105 d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h~ 181 (357)
T 4g56_B 105 EKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAHS 181 (357)
T ss_dssp TTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCCC
Confidence 98655 577899999999998765432 224558999999999999999 89999999999999999999999999999
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe--cCCCCeEEEEEEcCCC-CEEEEEecCCCCCCeEEEEeC
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
..|++++|++.++ .++++++.||+|++||+++++....+ ..+...+.+++|+|++ .+|++++. ++.|++||+
T Consensus 182 ~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd~ 256 (357)
T 4g56_B 182 SEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVNI 256 (357)
T ss_dssp SCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEES
T ss_pred CCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEEC
Confidence 9999999988654 58899999999999999988776544 3456689999999985 56777764 778999999
Q ss_pred CCCceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC-CCCEEEEEeC
Q 001176 572 SEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTS 649 (1132)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 649 (1132)
++++.+..+.+|.. .|.+++|+|++ ++|++++.|+.|+|||+++++.+..+ .| ...|++++|+| ++.+|++++.
T Consensus 257 ~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H--~~~V~~vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 257 KNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH--RDFVTGVAWSPLDHSKFTTVGW 332 (357)
T ss_dssp SCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC--SSCEEEEEECSSSTTEEEEEET
T ss_pred CCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC--CCCEEEEEEeCCCCCEEEEEcC
Confidence 99999999999887 89999999987 57889999999999999999887765 34 45899999998 8999999999
Q ss_pred CCcEEEEEcCCc
Q 001176 650 DNGIKILANSDG 661 (1132)
Q Consensus 650 dg~i~iw~~~~~ 661 (1132)
||+|++|++.+.
T Consensus 333 Dg~v~iW~~~~~ 344 (357)
T 4g56_B 333 DHKVLHHHLPSE 344 (357)
T ss_dssp TSCEEEEECC--
T ss_pred CCeEEEEECCCC
Confidence 999999999765
No 26
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-37 Score=357.51 Aligned_cols=305 Identities=14% Similarity=0.225 Sum_probs=251.5
Q ss_pred EEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEec----CCCccccccceeeeeccccccccc-ccccCCCCcCeEEE
Q 001176 337 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV----GSRERLAHKPFKVWDISAASMPLQ-NALLNDAAISVNRC 411 (1132)
Q Consensus 337 ~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~v 411 (1132)
+....|.+.|++++|+|+|+.+||+|+.||.|+||++ .+++.+.... ....+. .+.. .....+|.+.|.++
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~v~~~ 114 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLT-IIAELR---HPFALSASSGKTTNQVTCL 114 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEE-EEEEEE---CCCCCC------CBCEEEE
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccc-cccccc---ccccccccccCCCCceEEE
Confidence 3444478999999999999846899999999999999 8776310000 000000 0000 00123478899999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
+|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+.
T Consensus 115 ~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 115 AWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFE 188 (425)
T ss_dssp EECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEee
Confidence 9999999999999999999999 4444443 5778999999999999999 89999999999999999999999998
Q ss_pred CCCCC---------------eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 492 GHEAP---------------VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 492 ~h~~~---------------v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
.+... +.+++|++. ..+++++.||.|++||+.+......+..|...|.+++|+|++++|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 265 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA 265 (425)
T ss_dssp CC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred ccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence 88777 999999875 469999999999999999998888888999999999999999999999
Q ss_pred ecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 557 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
+. ++.|++||+.+++.+..+..|.. .+.+++|+|++ ++++++.|+.|++||+.+++.+..+..+.. .|.+++
T Consensus 266 ~~----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~ 337 (425)
T 1r5m_A 266 SD----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGR 337 (425)
T ss_dssp ET----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEE
T ss_pred cC----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEE
Confidence 75 77899999999999999988776 89999999999 999999999999999999999999887654 899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcc
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
|+|++++|++++.||.|++|++.++.
T Consensus 338 ~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 338 ISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EcCCCCEEEEEECCCeEEEEECCCCc
Confidence 99999999999999999999998763
No 27
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.2e-38 Score=353.22 Aligned_cols=318 Identities=15% Similarity=0.191 Sum_probs=229.2
Q ss_pred ccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccc
Q 001176 734 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 813 (1132)
Q Consensus 734 ~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 813 (1132)
.++...++.....|+++.... ..|...|.+++|+|||++|++++.|. +++||-
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~--------------- 70 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG--------------- 70 (357)
T ss_dssp ---------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------
T ss_pred eEEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------
Confidence 344445557778888763211 23888999999999999999998743 244432
Q ss_pred ccccccCCCcCcccccC-CCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEE----EeeCCCCCeEEEEEeC
Q 001176 814 APQLWQPPSGTLMTNDI-NESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT----MFMSPPPAATFLAFHP 888 (1132)
Q Consensus 814 ~~~l~~~~~~~~~~~~~-~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~----~~~~~~~~i~~l~~sp 888 (1132)
.+++|+..++....... ....| ...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++|+|
T Consensus 71 ~v~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 71 SIWVFKDPEGAPNESLCTAGVQT-EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp EEEEESSCC---CGGGCSEEEEC-SSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS
T ss_pred eEEEEECCCCCcceeEecccCCC-CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC
Confidence 12344444433222111 11126 788999999999988776669999999998876543 3447999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCcccccceeeeCCCCC
Q 001176 889 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR 967 (1132)
Q Consensus 889 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~ 967 (1132)
++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++. ++++++.|++|++||+.+++...... ...+
T Consensus 150 -dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~~~ 225 (357)
T 4g56_B 150 -DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FCAS 225 (357)
T ss_dssp -SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CTTC
T ss_pred -CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---eccc
Confidence 899999999999999999999999999999999999999999885 78999999999999999876433211 1112
Q ss_pred CCCCCCceeEEECCCC-cEEEE-EeCCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEeC
Q 001176 968 QSPLVGETKVQFHNDQ-THLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 968 ~~~~~~v~~~~~s~dg-~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg-~~las~~~dg~i~vwd~ 1043 (1132)
. ..+.+++|+|++ .+|++ +.|+.|++||+ +++.+..+ .+|...|++++|+|++ ++||+|+.||+|+|||+
T Consensus 226 ~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 226 D---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp C---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred c---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE---eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 2 568899999985 56776 46899999999 66665555 4568999999999997 57999999999999999
Q ss_pred CCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1044 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
++++.+..+ +|...|.+++|+|.++.+|+|++.||+|++|++.+..
T Consensus 300 ~~~~~~~~~------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 300 DFSEVFRDL------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TSCEEEEEC------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCCcEeEEC------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999876543 6788999999999888999999999999999997754
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=347.38 Aligned_cols=294 Identities=13% Similarity=0.150 Sum_probs=228.5
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCc-ccccCCCCCCCCCCeeEEEEe
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL-MTNDINESKPTEESAACIALS 846 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~h~~~~v~~~~~s 846 (1132)
+...|.+++|+|||+.|++++ |+++++||... .+|+...... .........| ...|.+++|+
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s 91 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQT-EAGVADLTWV 91 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEE-SSCEEEEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeecc-CCCEEEEEEe
Confidence 556799999999999777665 78889987432 1111110000 0000001113 6789999999
Q ss_pred eCCCEEEEee-CCeEEEEECCCCeEEEE----eeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecccc
Q 001176 847 KNDSYVMSAS-GGKVSLFNMMTFKVMTM----FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 921 (1132)
Q Consensus 847 ~dg~~la~~s-dg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 921 (1132)
||+. +++|+ ||+|+|||+.+++.+.. +.+|.+.|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.
T Consensus 92 ~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~ 169 (344)
T 4gqb_B 92 GERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA 169 (344)
T ss_dssp TTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC
Confidence 9965 55666 99999999998875543 458999999999999 89999999999999999999999999999999
Q ss_pred CCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC-CcEEEE-EeCCeEEEEe
Q 001176 922 NRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-QTHLLV-VHESQISVYD 998 (1132)
Q Consensus 922 ~~V~~l~~spdg~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~-~~d~~v~vwd 998 (1132)
+.|++++|+|++. +|++++.|++|++||+.+++....... ..+. ..+.+++|+|+ +++|++ +.|+.|++||
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------C---CCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeec---ceee---ccceeeeecCCCCcceEEeccCCcEEEEE
Confidence 9999999999984 789999999999999998764332111 1111 45789999995 456777 4689999999
Q ss_pred C-CCCceeecCCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeC
Q 001176 999 S-KLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1076 (1132)
Q Consensus 999 ~-~~~~~~~~~~~~~h~~~i~~i~~s~dg-~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1076 (1132)
+ +++++..+ .+|...|++++|+||+ ++||+|+.||+|+|||+.+++.+. + .+|...|.+++|+
T Consensus 244 ~~~~~~~~~~---~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-----------~~H~~~V~~v~~s 308 (344)
T 4gqb_B 244 TKSTSCVLSS---AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-----------QAHRDFVRDATWS 308 (344)
T ss_dssp SCC--CCEEE---ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-----------CCCSSCEEEEEEC
T ss_pred CCCCcEEEEE---cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-----------cCCCCCEEEEEEe
Confidence 9 66666665 4568999999999998 579999999999999999987642 2 3888999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1077 PSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1077 p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
|++..+|++++.|++|++|++.+..
T Consensus 309 p~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9666678899999999999997754
No 29
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.5e-36 Score=334.69 Aligned_cols=292 Identities=17% Similarity=0.292 Sum_probs=257.3
Q ss_pred ceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 335 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 335 ~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
....++. |.+.|++++|+|+|+ +|++|+.||.|+||++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 4455666 999999999999998 699999999999999988876542 5689999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCC
Q 001176 414 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 493 (1132)
Q Consensus 414 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h 493 (1132)
+|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|+.|++||+++++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987655 6788999999999999999 8999999999999999999999999999
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 494 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 494 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
..+|.+++|++++ .++++++.||.|++||+++.+....+. .+...+..++|+|++++|++++. ++.|++||+.
T Consensus 149 ~~~v~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 9999999998754 899999999999999999888776554 45568999999999999999975 7889999999
Q ss_pred CCceeeeeccccCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe--
Q 001176 573 EGAIKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-- 648 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 648 (1132)
+++.+..+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+++++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEcc
Confidence 999999998876522 23233346788999999999999999999999999987754 899999999999999987
Q ss_pred CCCcEEEEEcC
Q 001176 649 SDNGIKILANS 659 (1132)
Q Consensus 649 ~dg~i~iw~~~ 659 (1132)
.|+.|++|+..
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999863
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1e-36 Score=335.55 Aligned_cols=254 Identities=18% Similarity=0.302 Sum_probs=228.0
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|.+.|.+++|+||+++|++|+.||+|++||+.++..+. .+..|..+|.+++|+|+++ +|++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 67899999999999999999999999999999999887554 6778999999999999999 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCeEEEEEEcC-CCCEEEEEec
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSA-DGTRLFSCGT 558 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 558 (1132)
+.+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||+++... ...+..|...|.+++|+| ++..|++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCC--CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 99999999999999999999998865 8999999999999999988744 456788999999999999 6789999985
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC--CCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
|+.|++||+.++.....+..+....+..+.|+| ++.++++++.|+.|++||+++++++..+..|.. .|.+++
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~ 235 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAV 235 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEE
T ss_pred ----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEEEE
Confidence 888999999988877777655544788899987 678999999999999999999999999988754 899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
|+|++.+|++|+.||+|++||..++ ++.+.+
T Consensus 236 ~~p~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~ 266 (304)
T 2ynn_A 236 FHPTLPIIISGSEDGTLKIWNSSTY-KVEKTL 266 (304)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC-ceeeec
Confidence 9999999999999999999999887 444443
No 31
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=353.29 Aligned_cols=342 Identities=13% Similarity=0.167 Sum_probs=283.0
Q ss_pred CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEEC----CCCe------EEEEecC----
Q 001176 427 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV----VAGR------KQYTFEG---- 492 (1132)
Q Consensus 427 g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~----~~~~------~~~~~~~---- 492 (1132)
..+.+|+++...... ....|.+.|.+++|+|+++. +|++|+.|+.|++||+ .+++ ....+..
T Consensus 25 ~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 1r5m_A 25 SIDSSDDLDGFVKIL---KEIVKLDNIVSSTWNPLDES-ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFAL 100 (425)
T ss_dssp ---------CCCEEC---EEEEECSCCSEEEECSSCTT-EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCC
T ss_pred cccccccchhhhhhe---eeeeccCceEEEEECCCCCc-EEEEecCCceEEEEEEecccCCccccccccccccccccccc
Confidence 345678876543322 33457799999999999985 6899999999999999 8888 4555554
Q ss_pred ------CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001176 493 ------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 566 (1132)
Q Consensus 493 ------h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1132)
|...|.+++|+|+ +.+|++++.||.|++|| .++.....+..|...|.+++|+|++++|++++. ++.|
T Consensus 101 ~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i 173 (425)
T 1r5m_A 101 SASSGKTTNQVTCLAWSHD--GNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV----ENVT 173 (425)
T ss_dssp C------CBCEEEEEECTT--SSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEET----TCCE
T ss_pred cccccCCCCceEEEEEcCC--CCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEec----CCeE
Confidence 6889999999884 48999999999999999 566777788889999999999999999999975 7789
Q ss_pred EEEeCCCCceeeeeccccCCc---------------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001176 567 VEWNESEGAIKRTYSGFRKRS---------------LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 631 (1132)
Q Consensus 567 ~~wd~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1132)
++||+.+++.+..+..+.. . +.+++|++++ .+++++.+|.|++||+.+++.+..+..+.. .
T Consensus 174 ~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~--~ 249 (425)
T 1r5m_A 174 ILWNVISGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHG--P 249 (425)
T ss_dssp EEEETTTTEEEEEECCC----------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSS--C
T ss_pred EEEECCCCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCC--c
Confidence 9999999999988887665 4 8889999874 688899999999999999998888876644 8
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCC
Q 001176 632 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 711 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 711 (1132)
|.+++|+|++++|++++.||.|++||+.++ +....
T Consensus 250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~-------------------------------------------- 284 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNG-NSQNC-------------------------------------------- 284 (425)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEECSSSB-SCSEE--------------------------------------------
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCC-ccceE--------------------------------------------
Confidence 999999999999999999999999998655 11000
Q ss_pred CCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccc
Q 001176 712 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 791 (1132)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 791 (1132)
T Consensus 285 -------------------------------------------------------------------------------- 284 (425)
T 1r5m_A 285 -------------------------------------------------------------------------------- 284 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeE
Q 001176 792 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV 870 (1132)
Q Consensus 792 ~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 870 (1132)
+.+ | ...|.+++|+|++ ++++++ |+.|++||+.+++.
T Consensus 285 --------------------------------------~~~--~-~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~ 322 (425)
T 1r5m_A 285 --------------------------------------FYG--H-SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL 322 (425)
T ss_dssp --------------------------------------ECC--C-SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE
T ss_pred --------------------------------------ecC--C-CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE
Confidence 000 4 6678999999999 888887 89999999999999
Q ss_pred EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccce--------------------eeeeeccccC--CeeEEE
Q 001176 871 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--------------------VKTKLKGHQN--RITGLA 928 (1132)
Q Consensus 871 ~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~ 928 (1132)
+..+..|...|.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|++++
T Consensus 323 ~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 401 (425)
T 1r5m_A 323 LALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLS 401 (425)
T ss_dssp EEEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEE
T ss_pred eEecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEE
Confidence 999999999999999999 89999999999999999999988 8899999977 999999
Q ss_pred EcCCCCEEEEEcCCCcEEEEECC
Q 001176 929 FSPTLNALVSSGADAQLCMWSID 951 (1132)
Q Consensus 929 ~spdg~~l~s~~~D~~i~iwd~~ 951 (1132)
|+|++++|++++.||.|++|+++
T Consensus 402 ~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 402 WNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECTTSSEEEEEESSSCCEEEECC
T ss_pred ccCCCceEEEEecCceEEEEeec
Confidence 99999999999999999999986
No 32
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.9e-36 Score=340.83 Aligned_cols=249 Identities=14% Similarity=0.201 Sum_probs=225.5
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|.+.|.+++|+||+++||+|+.||+|++||..+++... .+..|...|.+++|+|++. ++++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 66899999999999999999999999999999998877554 5667889999999999999 899999999999999
Q ss_pred CCCC------eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcC--CCCE
Q 001176 481 VVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTR 552 (1132)
Q Consensus 481 ~~~~------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~ 552 (1132)
+... .....+.+|...|.+++|++++ ..|++++.|++|++||+++++....+.+|...|.+++++| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSD--MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8643 3456777899999999998754 7999999999999999999999999999999999999987 5789
Q ss_pred EEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001176 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
|++++. |+.|++||+++++++..+.+|.. .|.+++|+|++.+|++++.|+.|++||+++++.+..+..+.....+
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 999985 78899999999999999999887 8999999999999999999999999999999888877665544568
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 633 PRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+++|+|++.+|++|+.|+.|++||+.++
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 89999999999999999999999999877
No 33
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-36 Score=347.35 Aligned_cols=309 Identities=15% Similarity=0.248 Sum_probs=251.4
Q ss_pred ceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 335 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 335 ~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
++...+.|.+.|+|++|||||+ +||+|+ ++.++||++.+++.+....-..-.... ...........+...|.+++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD-PENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCccccccc-cccccccccCCCceeEEEEEEC
Confidence 4456677999999999999999 688876 789999999998765421000000000 0000000111244469999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCC
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 494 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~ 494 (1132)
|||++||+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+++++....+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999876544 6789999999999999999 89999999999999999999888876 56
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
..+.+++++|. ++.+|++++.|+.|++||++++.....+ .+|...|.+++|+|+|++|++++. |+.|+
T Consensus 207 ~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~ 281 (393)
T 1erj_A 207 DGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVK 281 (393)
T ss_dssp SCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred CCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEE
Confidence 78999999873 4489999999999999999988776655 567889999999999999999985 88899
Q ss_pred EEeCCCC------------ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceE
Q 001176 568 EWNESEG------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 635 (1132)
Q Consensus 568 ~wd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1132)
+||+++. .+...+.+|.. .|.+++|+|++.+|++|+.|+.|++||..+++.+..+..|.. .|.++
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v 358 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISV 358 (393)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEE
Confidence 9999753 34566778876 899999999999999999999999999999999999987754 79999
Q ss_pred EEcC------CCCEEEEEeCCCcEEEEEcCC
Q 001176 636 RFNK------EGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 636 ~~s~------~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
+|++ ++++|++|+.||+|++|++..
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9876 688999999999999999754
No 34
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-36 Score=337.09 Aligned_cols=298 Identities=15% Similarity=0.202 Sum_probs=234.4
Q ss_pred cceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccc-cCCCCcCeEEE
Q 001176 334 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL-LNDAAISVNRC 411 (1132)
Q Consensus 334 ~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~v 411 (1132)
.+++.++. |.+.|++++|+|+ +||+|+.|++|+|||+.++..... ..+ ..+|...|.++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~----------------~~~~~~~h~~~v~~v 64 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI----------------DVLDETAHKKAIRSV 64 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE----------------EEECTTCCCSCEEEE
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE----------------EEEecCCccCCEEEE
Confidence 34567777 9999999999998 699999999999999987532110 001 12499999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCC----ceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC----
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTG----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---- 483 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~----~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~---- 483 (1132)
+|+|++++||+|+.|++|++||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+..
T Consensus 65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCC
T ss_pred EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCC
Confidence 999999999999999999999986432 1233446789999999999999999 899999999999999943
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCeEEEEEEcCC--CCEEEEEecC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSAD--GTRLFSCGTS 559 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~ 559 (1132)
.+++..+.+|...|.+++|+|++ .+|++++.|++|++||.... .....+.+|...|.+++|+|+ +.+|++++.
T Consensus 143 ~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~- 219 (330)
T 2hes_X 143 YECISVLQEHSQDVKHVIWHPSE--ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD- 219 (330)
T ss_dssp CEEEEEECCCSSCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred eEEEEEeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence 35678899999999999998854 89999999999999998766 456678899999999999998 678999875
Q ss_pred CCCCCeEEEEeCCCC--------ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee--EEEEeCCCCC
Q 001176 560 KEGESHLVEWNESEG--------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGGL 629 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~ 629 (1132)
|+.|++||+..+ .....+.+.+...|.+++|++++ +|++++.||.|++||..+++. .... ...+.
T Consensus 220 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~ 294 (330)
T 2hes_X 220 ---DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHG 294 (330)
T ss_dssp ---TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTT
T ss_pred ---CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-ccccc
Confidence 788999998765 34455555233389999999765 899999999999999988742 3222 12233
Q ss_pred C-CcceEEEcC--CCCEEEEEeCCCcEEEEEcCC
Q 001176 630 P-ASPRLRFNK--EGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 630 ~-~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
. .|.+++|+| ++++|++|+.||+|++|++.+
T Consensus 295 ~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 295 VYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 3 689999999 789999999999999999864
No 35
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6e-36 Score=331.77 Aligned_cols=247 Identities=19% Similarity=0.289 Sum_probs=221.0
Q ss_pred cCCCCcCeEEEEEcCCC-CeEEEEeCCCeEEEEEecCCCce--eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEE
Q 001176 401 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 477 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg-~~las~~~dg~i~iwd~~~~~~~--~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~ 477 (1132)
+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v~ 90 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLR 90 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEEE
Confidence 77999999999999965 89999999999999999754321 23446889999999999999999 899999999999
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCC------CC
Q 001176 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD------GT 551 (1132)
Q Consensus 478 vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~------~~ 551 (1132)
+||+.+++.+..+.+|...|.+++|++++ .+|++++.|++|++||++ ......+..|...|.+++++|. +.
T Consensus 91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 91 LWDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS--CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CC
T ss_pred EEECCCCCeeEEEccCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence 99999999999999999999999998754 899999999999999996 4566778889999999999985 44
Q ss_pred EEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001176 552 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 631 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1132)
.+++++. ++.|++||+++++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 168 ~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~ 239 (319)
T 3frx_A 168 TIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---DE 239 (319)
T ss_dssp EEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---SC
T ss_pred EEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---Cc
Confidence 7888875 78899999999999999999887 8999999999999999999999999999999999888764 36
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 632 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
|.+++|+|++.+|++++.+ .+++|++...
T Consensus 240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp EEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred EEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 9999999999999988765 6999999876
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=360.26 Aligned_cols=297 Identities=14% Similarity=0.266 Sum_probs=250.6
Q ss_pred cCCCCeeEEEEccCCCeEEEEE----------cCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEE
Q 001176 341 NQGSNVMSMDFHPQQQTILLVG----------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 410 (1132)
Q Consensus 341 ~h~~~V~~~~~spdg~~lla~g----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 410 (1132)
.+...|.+++|||+|+.++++| +.|+.|+|||+.+++.... + ....|...|.+
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~ 72 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFND 72 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEE
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEE
Confidence 3445799999999998789999 8899999999998763210 0 02358899999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEecCCCc-eeeeeeeecccCCEEEEEEecC-CCcEEEEEEcCCCcEEEEECCCCe---
Q 001176 411 CVWGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR--- 485 (1132)
Q Consensus 411 v~~spdg~~las~~~dg~i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d-~~~~~l~s~~~dg~v~vwd~~~~~--- 485 (1132)
++|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccc
Confidence 99999999999999999999999987211 1133367889999999999998 66 89999999999999999886
Q ss_pred ---EEE---EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCeEEEEEEcCCC-CE
Q 001176 486 ---KQY---TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADG-TR 552 (1132)
Q Consensus 486 ---~~~---~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~ 552 (1132)
... .+.+|...|.+++|+|++ +.++++++.||.|++||+++.+....+..+ ...+.+++|+|++ .+
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE
T ss_pred ccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE
Confidence 333 346799999999998862 379999999999999999998888877776 6789999999997 57
Q ss_pred EEEEecCCCCCCeEEEEeCCCC-ceeeeec-cccCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCC
Q 001176 553 LFSCGTSKEGESHLVEWNESEG-AIKRTYS-GFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 629 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1132)
+++++.++ .++.|++||++++ ..+..+. +|.. .|.+++|+| ++++|++++.|+.|++||+.+++.+..+..|..
T Consensus 230 l~~~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~- 306 (416)
T 2pm9_A 230 VATATGSD-NDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN- 306 (416)
T ss_dssp EEEEECCS-SSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS-
T ss_pred EEEEECCC-CCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC-
Confidence 77776421 1228999999986 6677777 7766 899999999 899999999999999999999999999987754
Q ss_pred CCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCc
Q 001176 630 PASPRLRFNKEG-SLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 630 ~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.|.+++|+|++ .+|++++.||.|++|++.++
T Consensus 307 -~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 307 -WCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp -CCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred -ceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 79999999998 89999999999999999876
No 37
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.8e-37 Score=350.83 Aligned_cols=294 Identities=15% Similarity=0.199 Sum_probs=253.6
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|+.+++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 67899999999999999999999999999999999886554 6788999999999999999 899999999999999
Q ss_pred CCCCe-------EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-----cCCCCeEEEEEEcC
Q 001176 481 VVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYSA 548 (1132)
Q Consensus 481 ~~~~~-------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~s~ 548 (1132)
+.+.. ....+.+|.+.|.++.|.|..+ ..|++|+.|++|++||+.++.....+ .+|...|.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87532 3456789999999999988643 67999999999999999998887766 56788999999987
Q ss_pred -CCCEEEEEecCCCCCCeEEEEeCC-CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC
Q 001176 549 -DGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 626 (1132)
Q Consensus 549 -~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1132)
+++++++++. |+.|++||++ .++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+++++.+..+..+
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 8899999985 7889999998 5577888999887 8999999999999999999999999999999998887654
Q ss_pred CC-----CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccc
Q 001176 627 GG-----LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 701 (1132)
Q Consensus 627 ~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 701 (1132)
.. ...|.+++|+|+|++|++|+.||.|++||..++ +....+...
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~------------------------------ 339 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLNLGTL------------------------------ 339 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEEECCS------------------------------
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEEEecc------------------------------
Confidence 22 224899999999999999999999999998776 222221100
Q ss_pred cccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCC
Q 001176 702 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG 781 (1132)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 781 (1132)
..+|...|.+++|+|+|
T Consensus 340 ---------------------------------------------------------------~~~h~~~v~~l~~s~dg 356 (380)
T 3iz6_a 340 ---------------------------------------------------------------QNSHEGRISCLGLSSDG 356 (380)
T ss_dssp ---------------------------------------------------------------CSSCCCCCCEEEECSSS
T ss_pred ---------------------------------------------------------------cCCCCCceEEEEECCCC
Confidence 01267789999999999
Q ss_pred ceEEeecccceeEEEeec
Q 001176 782 LSLLALASNAVHKLWKWQ 799 (1132)
Q Consensus 782 ~~l~~~~~dg~i~vw~~~ 799 (1132)
..|++++.||.|++|++.
T Consensus 357 ~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 357 SALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SEEEEECTTSCEEEEECC
T ss_pred CEEEEeeCCCCEEEEecC
Confidence 999999999999999875
No 38
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4e-36 Score=337.37 Aligned_cols=300 Identities=16% Similarity=0.284 Sum_probs=243.9
Q ss_pred ceEEeec-CCCCeeEEEE-----cc-CCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcC
Q 001176 335 TVVRTLN-QGSNVMSMDF-----HP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 407 (1132)
Q Consensus 335 ~~~~~l~-h~~~V~~~~~-----sp-dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 407 (1132)
.+..+|. |.+.|++++| ++ +++ +|++|+.|++|+|||+.+++..... ......+.+|...
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~~ 78 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNHF 78 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSSC
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCCc
Confidence 4566777 9999999999 77 887 7999999999999999865432110 0111236789999
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE
Q 001176 408 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 408 V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~ 487 (1132)
|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+... ..
T Consensus 79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~-~~ 152 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGE-CK 152 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSC-EE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCC-ce
Confidence 9999999999999999999999999999987655 6789999999999999999 8999999999999998744 33
Q ss_pred EEec---CCCCCeEEEEeeccCC--------ccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 488 YTFE---GHEAPVYSVCPHHKES--------IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 488 ~~~~---~h~~~v~~i~~~~~~~--------~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
..+. +|...|.+++|+|... +.++++++.|+.|++||. .......+..|...|.+++|+|+|++|+++
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 3433 7899999999988642 268999999999999994 445566788899999999999999999999
Q ss_pred ecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEE--EEeCC-------
Q 001176 557 GTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--TVDAD------- 626 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~------- 626 (1132)
+. |+.|++||+.. ......+.. .. .|.+++|+|++.+++ ++.|+.|++||+.+++... .+...
T Consensus 232 s~----dg~v~iwd~~~~~~~~~~~~~-~~-~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 304 (343)
T 2xzm_R 232 GK----DKKLLIWDILNLTYPQREFDA-GS-TINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEG 304 (343)
T ss_dssp ET----TCEEEEEESSCCSSCSEEEEC-SS-CEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTT
T ss_pred cC----CCeEEEEECCCCcccceeecC-CC-cEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhh
Confidence 85 88899999954 444444432 22 699999999988765 4568889999998776543 33311
Q ss_pred --CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 627 --GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 627 --~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
++...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 305 ~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 305 QKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 33457899999999999999999999999998765
No 39
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=341.80 Aligned_cols=305 Identities=15% Similarity=0.157 Sum_probs=241.5
Q ss_pred ccc-ceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEe
Q 001176 768 AAS-KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 846 (1132)
Q Consensus 768 ~~~-~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s 846 (1132)
|.. .|..++|+|+|++|++++.|+.|++|++..... ........+ | ...|.+++|+
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~--------------------~~~~~~~~~--h-~~~v~~~~~s 70 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW--------------------ICKSVLSEG--H-QRTVRKVAWS 70 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE--------------------EEEEEECSS--C-SSCEEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc--------------------eeeeeeccc--c-CCcEEEEEEC
Confidence 655 899999999999999999999999998753211 000011223 7 8899999999
Q ss_pred eCCCEEEEee-CCeEEEEECCCC--eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc---eeeeeeccc
Q 001176 847 KNDSYVMSAS-GGKVSLFNMMTF--KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKGH 920 (1132)
Q Consensus 847 ~dg~~la~~s-dg~i~vwd~~~~--~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h 920 (1132)
|+|++|++++ |++|++||+.++ +++..+.+|...|.+++|+| ++++|++|+.|+.|++||+.++ +.+..+.+|
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h 149 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence 9999999999 999999998876 46788999999999999999 8999999999999999999875 356678899
Q ss_pred cCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-EeCCeEEEEeC
Q 001176 921 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS 999 (1132)
Q Consensus 921 ~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~ 999 (1132)
...|.+++|+|++++|++++.|++|++||..+++.. +.....+|. ..|.+++|+|+|++|++ +.|+.|++|+.
T Consensus 150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~---~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV---CCATLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE---EEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE---EEEEecCCC---CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 999999999999999999999999999999875422 234455665 67999999999999999 57999999996
Q ss_pred -CCCc---------------eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCcccccccc
Q 001176 1000 -KLEC---------------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV 1063 (1132)
Q Consensus 1000 -~~~~---------------~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1063 (1132)
.... +..+. ..|...|.+++|+|++..|++++.|+.|++|+...+....... ..+..+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--~~~~~~~~ 299 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLS--GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT--FSLTAHLH 299 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEEC--SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC--EEEEEEET
T ss_pred ccCCCCccceeeccCCccceeEEec--CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee--EEEEeeec
Confidence 2111 11111 2368899999999999999999999999999998654321110 00111223
Q ss_pred CCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCcccccC
Q 001176 1064 SSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1106 (1132)
Q Consensus 1064 ~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~~ 1106 (1132)
.+|...|.+++|+|+++.+|++|+.||+|++|++.+.++....
T Consensus 300 ~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 5889999999999955579999999999999999998854443
No 40
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=3.1e-35 Score=379.93 Aligned_cols=553 Identities=12% Similarity=0.082 Sum_probs=396.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+...+.+++|||+ . ++..+. +.|++|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4467899999964 4 444443 799999998876432 567999999999999999999
Q ss_pred EEeCC------CeEEEEEecCCCceeeeeeeecccCCE-------EEEEEecCCCcEEEEEEcCC------CcEEEEECC
Q 001176 422 VAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGV-------NDIAFAHPNKQLCIVTCGDD------KMIKVWDVV 482 (1132)
Q Consensus 422 s~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~v-------~~v~~s~d~~~~~l~s~~~d------g~v~vwd~~ 482 (1132)
+++.+ ..|++|++.+++ .. .+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~-~~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGE-IK---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTE-EE---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCC-eE---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 379999998865 22 467788888 9999999998 77887754 468888888
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEec------------CCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCC
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI------------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG 550 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 550 (1132)
+++.. .+..+. ...++|+| | ++++++. +...++|.....+....+..|...+.+++|+++
T Consensus 143 ~g~~~-~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFV-PLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEE-ECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeE-EecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 77754 343332 34667876 4 7777753 345677765444555666888899999999988
Q ss_pred CEEEEEecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC--
Q 001176 551 TRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-- 627 (1132)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 627 (1132)
..++++. .++.+.+|.+.. +.....+..+. .+...+|+|+|++++.+ .++.|++|++.... +..+..+.
T Consensus 215 ~l~~~~~----~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~ 286 (1045)
T 1k32_A 215 RIYFITD----IDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLE 286 (1045)
T ss_dssp EEEEEEC----TTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCC
T ss_pred EEEEEEe----ccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCccc
Confidence 4444443 245567776543 34445555544 35667999999988887 58999999995443 33444321
Q ss_pred -------CCCCcceEEEc-CCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccc
Q 001176 628 -------GLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 699 (1132)
Q Consensus 628 -------~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 699 (1132)
+...+.+++|+ |||+.|++++ ++.|.+|+..++. ... +..
T Consensus 287 ~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-~~~-~~~----------------------------- 334 (1045)
T 1k32_A 287 SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-VLK-VPE----------------------------- 334 (1045)
T ss_dssp BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-EEE-CSC-----------------------------
T ss_pred ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-eEE-ccC-----------------------------
Confidence 11258999999 9999999887 7899999887652 111 110
Q ss_pred cccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCccccc-ceEEEEEe
Q 001176 700 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS-KVVRLIYT 778 (1132)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s 778 (1132)
+.. .+..++|+
T Consensus 335 --------------------------------------------------------------------~~~~~~~~~~~s 346 (1045)
T 1k32_A 335 --------------------------------------------------------------------PLRIRYVRRGGD 346 (1045)
T ss_dssp --------------------------------------------------------------------CSCEEEEEECSS
T ss_pred --------------------------------------------------------------------CCcceEEeeeEc
Confidence 223 56788899
Q ss_pred cCCceEEeecccceeE-EEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-
Q 001176 779 NSGLSLLALASNAVHK-LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 856 (1132)
Q Consensus 779 ~~g~~l~~~~~dg~i~-vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s- 856 (1132)
||+.++.++.++.+. +|++. ++.... +.+ | ...+..++|||||++|++++
T Consensus 347 -dg~~l~~~s~~~~l~~~~d~~----------------------~~~~~~--l~~--~-~~~~~~~~~SpDG~~la~~~~ 398 (1045)
T 1k32_A 347 -TKVAFIHGTREGDFLGIYDYR----------------------TGKAEK--FEE--N-LGNVFAMGVDRNGKFAVVAND 398 (1045)
T ss_dssp -SEEEEEEEETTEEEEEEEETT----------------------TCCEEE--CCC--C-CCSEEEEEECTTSSEEEEEET
T ss_pred -CCCeEEEEECCCceEEEEECC----------------------CCCceE--ecC--C-ccceeeeEECCCCCEEEEECC
Confidence 999898888777666 66543 232222 222 4 67899999999999999998
Q ss_pred CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCC----------cEEEEEcccceeeeeeccccCCeeE
Q 001176 857 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----------SVQIYNVRVDEVKTKLKGHQNRITG 926 (1132)
Q Consensus 857 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~ 926 (1132)
++.|++||+.+++....+.+|...+.+++|+| +|++|++++.++ .|++||+.+++ ...+..|...+.+
T Consensus 399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~ 476 (1045)
T 1k32_A 399 RFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYA 476 (1045)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEE
T ss_pred CCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCC
Confidence 78999999999998888888999999999999 899998887654 89999999887 6778888888999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEE--EE-E-eCCeEEEEeCCCC
Q 001176 927 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL--LV-V-HESQISVYDSKLE 1002 (1132)
Q Consensus 927 l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l--~~-~-~d~~v~vwd~~~~ 1002 (1132)
++|+|||++|++++.++...+|+...... ....+ ..+..+.+++++... +. . .+.....|++.+.
T Consensus 477 ~~~spdG~~l~~~s~~~~~~~~~~~~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 545 (1045)
T 1k32_A 477 PAFDADSKNLYYLSYRSLDPSPDRVVLNF------SFEVV-----SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 545 (1045)
T ss_dssp EEECTTSCEEEEEESCCCCCEECSSSSCE------ECCSC-----BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTG
T ss_pred ceEcCCCCEEEEEecccCCcCcchhcccc------ccccC-----ceeEEEEeCCCCCCccccCcCccccccccccccCH
Confidence 99999999999999999899998764321 00000 223444555554432 22 1 1111224555432
Q ss_pred --ceeecCCCCCCCCCeEEEEEccCCCEEEE-------------EecCCcEEEEeCCCcceecccCCCccccccccCCCC
Q 001176 1003 --CSRSWSPKDALPAPISSAIYSCDGLLVYA-------------GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNT 1067 (1132)
Q Consensus 1003 --~~~~~~~~~~h~~~i~~i~~s~dg~~las-------------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1132)
.+..+ ..|...+..++|+|||+++++ ...+..|.+||+.+++.....
T Consensus 546 ~~~~~~l---~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--------------- 607 (1045)
T 1k32_A 546 YKRSSPI---NVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK--------------- 607 (1045)
T ss_dssp GGGCEEC---SCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---------------
T ss_pred hHceEEc---CCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee---------------
Confidence 22222 234678999999999988875 123557889999988753211
Q ss_pred CCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1068 AHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1068 ~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
..+..++|+| |++.|++++.| .|++||+.+++
T Consensus 608 ~~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 608 NNLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred cCcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 3466889999 88999988866 89999998876
No 41
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-35 Score=334.07 Aligned_cols=304 Identities=21% Similarity=0.293 Sum_probs=260.7
Q ss_pred ccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 333 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 333 ~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
...+..+|. |.+.|++|+|+|++..+|+||+.|++|+|||+.+++.... .....+.+|...|.++
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~~ 92 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSDV 92 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEEE
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEEE
Confidence 345567788 9999999999998544899999999999999987654321 1112367899999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE-EEe
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTF 490 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~-~~~ 490 (1132)
+|+|||++|++|+.|+.|++|+........ ....+...+..+.+++++. +|++|+.|+.+++||+...... ..+
T Consensus 93 ~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~ 167 (340)
T 4aow_A 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQD 167 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECS
T ss_pred EECCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEe
Confidence 999999999999999999999998876444 4556788999999999999 7999999999999998776543 456
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
.+|...+..++|++.....++++++.|+.|++||+++......+..|...|++++|+|++++|++++. |+.|++||
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd 243 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWD 243 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEE
T ss_pred ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEE
Confidence 78999999999998887789999999999999999999998999999999999999999999999985 78899999
Q ss_pred CCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC-------CCCCCcceEEEcCCCCE
Q 001176 571 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-------GGLPASPRLRFNKEGSL 643 (1132)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~ 643 (1132)
+++++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+..+ .+...|.+++|+|+|++
T Consensus 244 ~~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 244 LNEGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp TTTTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred eccCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 99999998888764 699999999875 566778999999999998887776532 34557999999999999
Q ss_pred EEEEeCCCcEEEEEcCCcc
Q 001176 644 LAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~ 662 (1132)
|++|+.||.|++||+.+|.
T Consensus 321 l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTSCEEEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCcC
Confidence 9999999999999999883
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.9e-35 Score=326.12 Aligned_cols=256 Identities=20% Similarity=0.324 Sum_probs=228.9
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|...|.+++|+|+|++|++|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWD 93 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEEE
Confidence 67899999999999999999999999999999999887554 5788999999999999999 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+.+++.+..+.+|...|.+++|+|.+ .+|++++.|+.|++||+++.+....+..|...|.+++|+|+++++++++.
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 169 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-- 169 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC--
Confidence 99999999999999999999998854 89999999999999999999988899999999999999999999999985
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc-C
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN-K 639 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~ 639 (1132)
++.|++||+++++.+..+.......+..++|+|+++++++++.|+.|++||+.+++.+..+..+..........++ +
T Consensus 170 --d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 170 --DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp --TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred --CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence 7789999999999888876665558999999999999999999999999999999999998877553333334444 5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 640 EGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
++.+|++|+.||.|++||+.++ +....+
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~-~~~~~~ 275 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTK-EIVQKL 275 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTC-CEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCc-hhhhhh
Confidence 8899999999999999999877 444443
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.9e-35 Score=329.29 Aligned_cols=319 Identities=13% Similarity=0.173 Sum_probs=270.5
Q ss_pred cCCcceeeecCCCCCCceeccCC--------cccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCcccc
Q 001176 309 TGQSDEVSFAGVAHTPNVYSQDD--------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA 380 (1132)
Q Consensus 309 ~~~v~~~~~~~~g~~~~~~~~d~--------~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~ 380 (1132)
..++.+++++|||+.++....+. .....+..+.|...|++++|+|+++ ++++++ ||.|++||+.+++...
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCS
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCcee
Confidence 34788999999999987654322 2345566677999999999999998 688888 9999999998876433
Q ss_pred ccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec
Q 001176 381 HKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 460 (1132)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~ 460 (1132)
. + ......+|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|
T Consensus 87 ~--~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 87 P--V------------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISP 151 (337)
T ss_dssp C--S------------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECT
T ss_pred e--e------------ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECC
Confidence 1 0 00012368999999999999999999999999999999987632 2335778999999999999
Q ss_pred CCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCe
Q 001176 461 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW 540 (1132)
Q Consensus 461 d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 540 (1132)
+++ ++++++.|+.|++||+.+++.+..+.+|...|.+++|+|++ .++++++.||.|++||+++.+....+. +...
T Consensus 152 ~~~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~ 226 (337)
T 1gxr_A 152 DSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ 226 (337)
T ss_dssp TSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred CCC--EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC--CEEEEEecCCcEEEEECCCCceEeeec-CCCc
Confidence 999 89999999999999999999999999999999999998854 899999999999999999887766654 5678
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeE
Q 001176 541 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 620 (1132)
Q Consensus 541 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1132)
+.+++|+|+++++++++. ++.|++||+.+++.. .+..|.. .+.+++|+|+++++++++.||.|++||+.+++.+
T Consensus 227 v~~~~~s~~~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGME----SSNVEVLHVNKPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEEEEECTTSSEEEEEET----TSCEEEEETTSSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEECCCCCEEEEEcC----CCcEEEEECCCCCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 999999999999999875 778999999987754 5566665 8999999999999999999999999999999888
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 621 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
..... ...+.+++|+|++++|++++.||.|++|++
T Consensus 301 ~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 301 FQSKE---SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEC---SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEecC---CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 66543 337999999999999999999999999986
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.7e-36 Score=334.57 Aligned_cols=286 Identities=13% Similarity=0.165 Sum_probs=244.1
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+.++|.+++|||||+ +++++..++.+.+|......... ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 567899999999999 57777666666666444332211 1346999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeee--cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe--EEEEecCCCCCe
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPV 497 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~h~~~v 497 (1132)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999876544433444 7999999999999999 89999999999999999887 667788999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCcee
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 577 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1132)
.+++|+|++ .++++++.||.|++||+++.+....+..|...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~~~--~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISPDS--KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECCCC--CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 999998854 89999999999999999998888888889999999999999999999975 788999999999988
Q ss_pred eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 578 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
..+.. .. .+.+++|+|+++++++++.++.|++||+.+++.. .+..+ ...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~~-~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-TS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-SS-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-CC-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCC--ccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 87753 33 7999999999999999999999999999988764 34444 44899999999999999999999999999
Q ss_pred cCCc
Q 001176 658 NSDG 661 (1132)
Q Consensus 658 ~~~~ 661 (1132)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9877
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.9e-35 Score=343.23 Aligned_cols=345 Identities=11% Similarity=0.113 Sum_probs=282.7
Q ss_pred cCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001176 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 485 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~ 485 (1132)
..+++++|+|+|++|++|+.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.||.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345679999999999999999999999998865543 34445 4455567899999 89999999999999999999
Q ss_pred EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCe
Q 001176 486 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565 (1132)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 565 (1132)
....+.+|...|.+++|+|++ .+|++++.|+.|++||+++++....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSG--EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECCCC--CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 999989999999999998854 89999999999999999999999999999999999999999999999985 778
Q ss_pred EEEEeCCCCceeeeecccc--CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCE
Q 001176 566 LVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 643 (1132)
Q Consensus 566 i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 643 (1132)
|++||+++++.+..+..+. ...+.+++|.+.+... ....+ ...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~~--~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHEIS--TSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGGGC--CCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eeecc--cCcccceEEcCCCCE
Confidence 9999999999999887642 2367888887654322 01111 236889999999999
Q ss_pred EEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccC
Q 001176 644 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 723 (1132)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1132)
|++++.||.|++||+.++......
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------------------------------- 285 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQL-------------------------------------------------------- 285 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEE--------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeEEc--------------------------------------------------------
Confidence 999999999999998765111000
Q ss_pred cCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccC
Q 001176 724 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 803 (1132)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 803 (1132)
T Consensus 286 -------------------------------------------------------------------------------- 285 (420)
T 3vl1_A 286 -------------------------------------------------------------------------------- 285 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCC-EEEEee-CCeEEEEECCCCeE-EEEeeC-CCC
Q 001176 804 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFKV-MTMFMS-PPP 879 (1132)
Q Consensus 804 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~-~la~~s-dg~i~vwd~~~~~~-~~~~~~-~~~ 879 (1132)
.. .| ...|.+++|+|++. +|++++ ||.|++||+.+++. +..+.+ |..
T Consensus 286 --------------------------~~--~~-~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~ 336 (420)
T 3vl1_A 286 --------------------------PS--KF-TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGT 336 (420)
T ss_dssp --------------------------CC--TT-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTS
T ss_pred --------------------------cc--cc-CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCC
Confidence 00 04 66788999999998 888888 89999999988754 667766 667
Q ss_pred CeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc---------eeeeeeccccCCeeEEEEcCCCC---EEEEEcCCCcEEE
Q 001176 880 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---------EVKTKLKGHQNRITGLAFSPTLN---ALVSSGADAQLCM 947 (1132)
Q Consensus 880 ~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---------~~~~~l~~h~~~V~~l~~spdg~---~l~s~~~D~~i~i 947 (1132)
.|+++.+ + ++++|++++.||.|++|++.+. .....+.+|.+.|.+++|+|+++ .+++++.+|.+.+
T Consensus 337 ~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~ 414 (420)
T 3vl1_A 337 PINNVYF-A-AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL 414 (420)
T ss_dssp CEEEEEE-E-TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred CceEEEe-C-CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence 7888865 4 5689999999999999998863 22234567889999999999999 7888888999999
Q ss_pred EECCC
Q 001176 948 WSIDK 952 (1132)
Q Consensus 948 wd~~~ 952 (1132)
|++..
T Consensus 415 ~~~~~ 419 (420)
T 3vl1_A 415 YNLSN 419 (420)
T ss_dssp EESCC
T ss_pred EeccC
Confidence 99864
No 46
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-34 Score=324.70 Aligned_cols=205 Identities=18% Similarity=0.294 Sum_probs=177.7
Q ss_pred eeeeecccCCEEEEEE-----ec-CCCcEEEEEEcCCCcEEEEECCC-------CeEEEEecCCCCCeEEEEeeccCCcc
Q 001176 443 HLEIDAHVGGVNDIAF-----AH-PNKQLCIVTCGDDKMIKVWDVVA-------GRKQYTFEGHEAPVYSVCPHHKESIQ 509 (1132)
Q Consensus 443 ~~~l~~h~~~v~~v~~-----s~-d~~~~~l~s~~~dg~v~vwd~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~~ 509 (1132)
...+.+|.+.|++++| ++ +++ +|+||+.|++|++||+.+ +.+...+.+|...|.+++|+|++ .
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~--~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--~ 89 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSP--VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--C 89 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCC--EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST--T
T ss_pred eeeeccchhhhhheeeEEEeecCCCCC--EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC--C
Confidence 3468899999999999 76 888 899999999999999874 34667889999999999998754 8
Q ss_pred EEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec---cccCC
Q 001176 510 FIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---GFRKR 586 (1132)
Q Consensus 510 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~~~~ 586 (1132)
++++++.|++|++||+++++....+..|...|.+++|+|++++|++++. ++.|++||+... ...... +|..
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~----d~~i~~wd~~~~-~~~~~~~~~~~~~- 163 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA----EREIKLWNILGE-CKFSSAEKENHSD- 163 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET----TSCEEEEESSSC-EEEECCTTTSCSS-
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC----CCEEEEEeccCC-ceeeeecccCCCc-
Confidence 9999999999999999999988899999999999999999999999985 788999999843 333332 4544
Q ss_pred ceEEEEEeCCC----------CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001176 587 SLGVVQFDTTR----------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 656 (1132)
Q Consensus 587 ~v~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1132)
.+.+++|+|++ .++++++.|+.|++||. ..+....+..|.. .|.+++|+|+|++|++|+.||.|++|
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~--~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHES--NVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSS--CEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccc--cceEEEECCCCCEEEEEcCCCeEEEE
Confidence 79999999987 78999999999999994 5666777776644 89999999999999999999999999
Q ss_pred EcCC
Q 001176 657 ANSD 660 (1132)
Q Consensus 657 ~~~~ 660 (1132)
|+.+
T Consensus 241 d~~~ 244 (343)
T 2xzm_R 241 DILN 244 (343)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9743
No 47
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-36 Score=351.93 Aligned_cols=357 Identities=9% Similarity=0.096 Sum_probs=268.5
Q ss_pred CCCCcCeEEEEEcC-CCCeEEEEeCCCeEEEEEecC---CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEE
Q 001176 402 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 477 (1132)
Q Consensus 402 ~~h~~~V~~v~~sp-dg~~las~~~dg~i~iwd~~~---~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~ 477 (1132)
.+|.+.|++++|+| ++++||+|+.||+|++||+.+ +........+ +|...|.+++|+|+++ +|++|+.||.|+
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~ 136 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQII 136 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEE
Confidence 67999999999999 999999999999999999987 5433322233 5999999999999999 899999999999
Q ss_pred EEECC---CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEE--EcCCCCE
Q 001176 478 VWDVV---AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA--YSADGTR 552 (1132)
Q Consensus 478 vwd~~---~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~ 552 (1132)
+||+. +++.+..+.+| .+..+.+++.+ +...+.++. +++++++
T Consensus 137 vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE--CIRKINLKNFG------------------------------KNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------------------------------SCCCEEEEEEEECSSCEE
T ss_pred EEEeccccCCceeeccccc--eeEEEEccCcc------------------------------cccCceEEEEEEcCCCCE
Confidence 99994 77777776666 67777776532 122344444 6789999
Q ss_pred EEEEecCCCCCCeEEEEeCCCCceeeeecc--ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCC
Q 001176 553 LFSCGTSKEGESHLVEWNESEGAIKRTYSG--FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
+++++. ++.|++||+++++.+..+.+ |.. .|.+++|+|++++|++|+.||.|++||+++++.+..+.... ..
T Consensus 185 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~ 258 (437)
T 3gre_A 185 LVALTN----LSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HA 258 (437)
T ss_dssp EEEEET----TSEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CE
T ss_pred EEEEeC----CCeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CC
Confidence 999975 78899999999999999988 555 89999999999999999999999999999999998886322 23
Q ss_pred CcceEEEc----CCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCC
Q 001176 631 ASPRLRFN----KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 706 (1132)
Q Consensus 631 ~v~~~~~s----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 706 (1132)
.|.+++|+ +++.+|++++.||.|++||+.++ +....+.++...+
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~------------------------------- 306 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQP------------------------------- 306 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEESSSSCC-------------------------------
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCCC-------------------------------
Confidence 78999555 56889999999999999999988 5666665543221
Q ss_pred CCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEe
Q 001176 707 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA 786 (1132)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 786 (1132)
..+.|+|+++.+
T Consensus 307 ------------------------------------------------------------------~~~~~~~~~~~l-- 318 (437)
T 3gre_A 307 ------------------------------------------------------------------SMEHFLPIEKGL-- 318 (437)
T ss_dssp ------------------------------------------------------------------CGGGGSCBCSSG--
T ss_pred ------------------------------------------------------------------ccceeccccccc--
Confidence 112233333222
Q ss_pred ecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEEC
Q 001176 787 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM 865 (1132)
Q Consensus 787 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~ 865 (1132)
.+. .+.+..| ...|++++|+ ++++|++++ |+.|++||+
T Consensus 319 --~~~-------------------------------------~~~~~~~-~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 319 --EEL-------------------------------------NFCGIRS-LNALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp --GGC-------------------------------------CCCCCCS-GGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred --ccc-------------------------------------eeccccc-CCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 000 0111125 7889999999 889999998 999999999
Q ss_pred CCCeEEEEeeCCCC---CeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCC--CCEEEEEc
Q 001176 866 MTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT--LNALVSSG 940 (1132)
Q Consensus 866 ~~~~~~~~~~~~~~---~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spd--g~~l~s~~ 940 (1132)
.+++....+.+|.. .+....+++ ...+++.. |+...+........|.+.|++++|+++ +.+|+|++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 358 NELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD 428 (437)
T ss_dssp TCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred CCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence 99999999988653 355667776 55554443 333444455666789999999999998 78999999
Q ss_pred CCCcEEEEE
Q 001176 941 ADAQLCMWS 949 (1132)
Q Consensus 941 ~D~~i~iwd 949 (1132)
.||.|++|+
T Consensus 429 ~dG~I~iw~ 437 (437)
T 3gre_A 429 NSGLIGIFQ 437 (437)
T ss_dssp TTSCEEEEC
T ss_pred CCceEEEeC
Confidence 999999995
No 48
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=353.94 Aligned_cols=273 Identities=10% Similarity=0.060 Sum_probs=214.2
Q ss_pred ccceEEeecCCCCeeEEEEccCC---------CeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCC
Q 001176 333 TKTVVRTLNQGSNVMSMDFHPQQ---------QTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 333 ~~~~~~~l~h~~~V~~~~~spdg---------~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
+.....++.+.+.|++|+|+|++ + +||+|+.++..
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~----------------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMD----------------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC--------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccC-----------------------------------
Confidence 55666777788999999999987 4 78888754310
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCcee-eeeeeecccCCEEEEEEecC------CCcEEEEEEcCCCcE
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHP------NKQLCIVTCGDDKMI 476 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~v~~v~~s~d------~~~~~l~s~~~dg~v 476 (1132)
-..+|+++.+|+++.|++|+||++.+++... ....+.+|.+.|.+++|+|+ +. +|++++.||+|
T Consensus 167 -------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtv 237 (524)
T 2j04_B 167 -------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTI 237 (524)
T ss_dssp ----------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCE
T ss_pred -------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeE
Confidence 0136899999999999999999998876432 12246678899999999997 45 89999999999
Q ss_pred EEEECCCCeE-----------EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCeEEEE
Q 001176 477 KVWDVVAGRK-----------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMM 544 (1132)
Q Consensus 477 ~vwd~~~~~~-----------~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~ 544 (1132)
++||+.+++. ...+.+|...|++++|++. ..|++|+.||+|++||++++.. ...+..|...|.++
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV 314 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence 9999987642 3478899999999999863 4899999999999999997644 45678899999999
Q ss_pred --EEcCCC-CEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC-CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeE
Q 001176 545 --AYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 620 (1132)
Q Consensus 545 --~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1132)
+|++++ ++|++++. |++|++||+++++.+..+.+|.. ..+.+++|+|+++.+++++.|+.|++||++++.++
T Consensus 315 ~~~~s~~g~~~laS~S~----D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~ 390 (524)
T 2j04_B 315 STAYSDFEDTVVSTVAV----DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV 390 (524)
T ss_dssp EEECCTTSCCEEEEEET----TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC
T ss_pred EEEcCCCCCeEEEEecc----CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc
Confidence 578888 88999985 88999999999888777777654 24788999999999999999999999999999888
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 621 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
..+..|.. .|++++|+|+|++|++|+.||+|++||..
T Consensus 391 ~~l~gH~~--~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 391 HPLVSRET--TITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp EEEEECSS--CEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred eeeecCCC--ceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 88877644 89999999999999999999999999964
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1e-35 Score=345.51 Aligned_cols=284 Identities=15% Similarity=0.170 Sum_probs=239.0
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
..+++++|+|+|+ +|++|+.||.|++||+.+++.... +..| ..+....|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEE
Confidence 3466899999999 588999999999999988765432 3344 445566789999999999
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEee
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~ 503 (1132)
+.||.|++||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999876443 5678999999999999999 89999999999999999999999999999999999998
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCCeEEE---------------------EEEcCCCCEEEEEecC
Q 001176 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTM---------------------MAYSADGTRLFSCGTS 559 (1132)
Q Consensus 504 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~---------------------~~~s~~~~~l~~~~~~ 559 (1132)
|++ .+|++++.|+.|++||+++++....+.. +...+.+ ++|+|++++|++++.
T Consensus 191 ~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (420)
T 3vl1_A 191 DRG--RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV- 267 (420)
T ss_dssp TTT--TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-
T ss_pred CCC--CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-
Confidence 854 8999999999999999998888777764 3334444 445789999999875
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCee-EEEEeCCCCCCCcceEEE
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPASPRLRF 637 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~ 637 (1132)
++.|++||+++++.+..+...+...+.+++|+|++. ++++++.||.|++||+.+++. +..+..+.. ..|.++.+
T Consensus 268 ---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~ 343 (420)
T 3vl1_A 268 ---SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG-TPINNVYF 343 (420)
T ss_dssp ---TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT-SCEEEEEE
T ss_pred ---CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC-CCceEEEe
Confidence 778999999999988887665555899999999998 999999999999999998754 666665322 36777755
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 638 NKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 638 s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+++++|++++.||.|++|++.+.
T Consensus 344 -~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 -AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp -ETTEEEEEETTTEEEEEEEECCT
T ss_pred -CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
No 50
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-36 Score=351.76 Aligned_cols=327 Identities=14% Similarity=0.179 Sum_probs=270.3
Q ss_pred ccCCcceeeecCCCC-CCcee----------ccCC-------ccc---ceEEeecCCCCeeEEEEccCCCeEEEEEcCCC
Q 001176 308 RTGQSDEVSFAGVAH-TPNVY----------SQDD-------LTK---TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG 366 (1132)
Q Consensus 308 ~~~~v~~~~~~~~g~-~~~~~----------~~d~-------~~~---~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg 366 (1132)
....+.+++|+|+|+ .+++. ..|. ... +++..+.|...|++++|+|+++ +|++|+.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK-IIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSS-CEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCC-eEEEEccCC
Confidence 344678889999987 55555 2222 222 2556667899999999999998 689999999
Q ss_pred cEEEEecCCC----ccccccceeeeecccccccccccccCCCCcCeEEEEEcCC-CCeEEEEeCCCeEEEEEecCCC---
Q 001176 367 DISLWEVGSR----ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTG--- 438 (1132)
Q Consensus 367 ~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~las~~~dg~i~iwd~~~~~--- 438 (1132)
.|+|||+.+. +.+. .+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++
T Consensus 90 ~v~vw~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMA-------------------RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp CEEEECCSSTTSCCCEEE-------------------ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred eEEEeecccccccccchh-------------------hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 9999999872 2222 26689999999999998 8999999999999999999876
Q ss_pred ---ceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCC------CCCeEEEEeeccCCcc
Q 001176 439 ---ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH------EAPVYSVCPHHKESIQ 509 (1132)
Q Consensus 439 ---~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h------~~~v~~i~~~~~~~~~ 509 (1132)
.......+.+|...|.+++|+|++.. ++++++.|+.|++||+.+++.+..+..| ...|.+++|+|++. .
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 228 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSLAH-VFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS-T 228 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSCTT-EEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT-T
T ss_pred ccccccccccccCCCCCeeEEEeCCCCCc-EEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC-C
Confidence 33322345679999999999999433 8999999999999999999999998876 78999999988642 6
Q ss_pred EEEEEecCC---eEEEEEcCCC-CceEEec-CCCCeEEEEEEcC-CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc
Q 001176 510 FIFSTAIDG---KIKAWLYDYL-GSRVDYD-APGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 583 (1132)
Q Consensus 510 ~l~s~s~dg---~i~~wd~~~~-~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1132)
++++++.|+ .|++||+++. .....+. .|...|.+++|+| ++++|++++. ++.|++||+.+++.+..+.+|
T Consensus 229 ~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~----dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 229 RVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR----DNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp EEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES----SSEEEEECSSSCCEEEEEECS
T ss_pred EEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC----CCCEEEeeCCCCccceeecCC
Confidence 899999999 9999999986 4555666 7889999999999 8999999975 788999999999999999988
Q ss_pred cCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeC--------------------C-------------CCC
Q 001176 584 RKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDA--------------------D-------------GGL 629 (1132)
Q Consensus 584 ~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------~-------------~~~ 629 (1132)
.. .|.+++|+|++ .++++++.|+.|++||+.+......... + ...
T Consensus 305 ~~-~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (416)
T 2pm9_A 305 GN-WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG 383 (416)
T ss_dssp SS-CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC
T ss_pred CC-ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc
Confidence 87 89999999999 8999999999999999987653221100 0 023
Q ss_pred CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 630 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
..+.+++|+|+|++|++++.|+.|++|++.++
T Consensus 384 ~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 384 EPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 46779999999999999999999999998764
No 51
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-34 Score=319.85 Aligned_cols=305 Identities=15% Similarity=0.204 Sum_probs=230.8
Q ss_pred CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC--eeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 573 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
+.+++..+.+|.. .|.+++|+|+ +|++|+.|+.|++||+..+ ..+..+....+...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4556778888887 8999999987 8999999999999999875 445555322245589999999999999999999
Q ss_pred CcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccc
Q 001176 651 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 730 (1132)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1132)
++|++|++....... .
T Consensus 80 ~~v~iw~~~~~~~~~--~-------------------------------------------------------------- 95 (330)
T 2hes_X 80 STVSIWAKEESADRT--F-------------------------------------------------------------- 95 (330)
T ss_dssp SCEEEEEC---------C--------------------------------------------------------------
T ss_pred CcEEEEEcccCcCcc--c--------------------------------------------------------------
Confidence 999999975330000 0
Q ss_pred cccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccc
Q 001176 731 VDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 810 (1132)
Q Consensus 731 ~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 810 (1132)
... + +..
T Consensus 96 -------------------------------------------------~~~-~--------~~~--------------- 102 (330)
T 2hes_X 96 -------------------------------------------------EMD-L--------LAI--------------- 102 (330)
T ss_dssp -------------------------------------------------CCE-E--------EEE---------------
T ss_pred -------------------------------------------------cce-e--------EEE---------------
Confidence 000 0 000
Q ss_pred cccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCC----CeEEEEeeCCCCCeEEEE
Q 001176 811 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT----FKVMTMFMSPPPAATFLA 885 (1132)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~ 885 (1132)
+.+ | ...|.+++|+|+|++|++++ |++|++||+.. .+++..+.+|...|++++
T Consensus 103 -------------------~~~--h-~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 103 -------------------IEG--H-ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp -------------------EC-------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred -------------------EcC--C-CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 112 6 77899999999999999998 89999999842 356788999999999999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEEcccc--eeeeeeccccCCeeEEEEcCC--CCEEEEEcCCCcEEEEECCCcccccc---
Q 001176 886 FHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKS--- 958 (1132)
Q Consensus 886 ~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~spd--g~~l~s~~~D~~i~iwd~~~~~~~~~--- 958 (1132)
|+| ++.+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+.++.....
T Consensus 161 ~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 239 (330)
T 2hes_X 161 WHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW 239 (330)
T ss_dssp ECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred ECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence 999 8999999999999999999876 678889999999999999999 77999999999999999976432110
Q ss_pred eeeeCCCC-CCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCC-CC--ceeecCCCCCCCC-CeEEEEEcc--CCCEEEE
Q 001176 959 RFIQAPAG-RQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK-LE--CSRSWSPKDALPA-PISSAIYSC--DGLLVYA 1031 (1132)
Q Consensus 959 ~~~~~~~~-~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~-~~--~~~~~~~~~~h~~-~i~~i~~s~--dg~~las 1031 (1132)
.+.....+ |. ..|.+++|++++.++..+.|+.|++||.. +. ..... ..+|.. .|.+++|+| ++++||+
T Consensus 240 ~~~~~~~~~h~---~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~--~~~h~~~~v~~v~~~~~~~~~~las 314 (330)
T 2hes_X 240 VCEAILPDVHK---RQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKR--ALCHGVYEINVVKWLELNGKTILAT 314 (330)
T ss_dssp EEEEECCSCCS---SCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEE--SCTTTTSCEEEEEEC-----CCEEE
T ss_pred EEeeecccccc---cceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecc--ccccccceEEEEEEecCCCceEEEE
Confidence 12222332 43 67999999987744444789999999993 32 22222 234566 899999999 7899999
Q ss_pred EecCCcEEEEeCCC
Q 001176 1032 GFCDGAIGVFDAET 1045 (1132)
Q Consensus 1032 ~~~dg~i~vwd~~~ 1045 (1132)
|+.||+|++||+++
T Consensus 315 ~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 315 GGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTSEEEEEEC--
T ss_pred ecCCCcEEEEEecc
Confidence 99999999999875
No 52
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.5e-34 Score=357.64 Aligned_cols=298 Identities=20% Similarity=0.284 Sum_probs=252.9
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
....+. |.+.|++++|+|++..+|++|+.|++|+||++.+...... .....+.+|...|.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence 344566 9999999999998766899999999999999987543211 0111267899999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe---c
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF---E 491 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~---~ 491 (1132)
|+|++|++|+.||+|+|||+.++.... .+.+|...|.+++|+|+++ +|++|+.|++|++||+......... .
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence 999999999999999999999886554 6789999999999999999 7999999999999998665443332 4
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeC
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
+|...|.+++|+|+.....+++++.|++|++||+++......+..|.+.|++++|+|++++|++++. |+.|++||+
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~ 590 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL 590 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 6889999999998766679999999999999999999888899999999999999999999999985 788999999
Q ss_pred CCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC-----------------CCCcce
Q 001176 572 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-----------------LPASPR 634 (1132)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~ 634 (1132)
.+++.+..+..+. .+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.+
T Consensus 591 ~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (694)
T 3dm0_A 591 AEGKKLYSLEANS--VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS 667 (694)
T ss_dssp TTTEEEECCBCSS--CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred CCCceEEEecCCC--cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence 9999888876543 699999999987776654 66799999999998887753311 113678
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 635 LRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
++|+|+|++|++|+.||.|++|++.
T Consensus 668 l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 668 LNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEcCCCCEEEEEcCCCeEEEEecc
Confidence 9999999999999999999999975
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-36 Score=351.87 Aligned_cols=344 Identities=10% Similarity=0.048 Sum_probs=234.9
Q ss_pred CCcCeEEEEEcCCC---------CeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC
Q 001176 404 AAISVNRCVWGPDG---------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 474 (1132)
Q Consensus 404 h~~~V~~v~~spdg---------~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg 474 (1132)
+.+.|.+++|+|++ ++||+|+.++.. -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 56789999999987 799999866420 01368888 899999999
Q ss_pred cEEEEECCCCeEE----EEecCCCCCeEEEEeecc----CCccEEEEEecCCeEEEEEcCCCCc-----------eEEec
Q 001176 475 MIKVWDVVAGRKQ----YTFEGHEAPVYSVCPHHK----ESIQFIFSTAIDGKIKAWLYDYLGS-----------RVDYD 535 (1132)
Q Consensus 475 ~v~vwd~~~~~~~----~~~~~h~~~v~~i~~~~~----~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~ 535 (1132)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887642 456678899999999986 3467999999999999999976542 23567
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc-eeeeeccccCCceEEE--EEeCCC-CEEEEEEcCCeEEE
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVV--QFDTTR-NRFLAAGDEFQIKF 611 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~i 611 (1132)
+|...|++++|++++ .|++++. |++|++||++++. +...+.+|.. .|.++ +|+|++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788999999999864 7888875 8899999999774 4456788877 89998 578887 89999999999999
Q ss_pred EECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCccccc
Q 001176 612 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 691 (1132)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1132)
||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++ .....+.+
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~-~~~~~l~g--------------------- 395 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA-FAVHPLVS--------------------- 395 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT-TCCEEEEE---------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc-ccceeeec---------------------
Confidence 99998887666655433235789999999999999999999999998765 11111111
Q ss_pred ccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccc
Q 001176 692 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 771 (1132)
Q Consensus 692 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1132)
T Consensus 396 -------------------------------------------------------------------------------- 395 (524)
T 2j04_B 396 -------------------------------------------------------------------------------- 395 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCE
Q 001176 772 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 851 (1132)
Q Consensus 772 i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~ 851 (1132)
| ...|++++|+|+|++
T Consensus 396 ---------------------------------------------------------------H-~~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 396 ---------------------------------------------------------------R-ETTITAIGVSRLHPM 411 (524)
T ss_dssp ---------------------------------------------------------------C-SSCEEEEECCSSCCB
T ss_pred ---------------------------------------------------------------C-CCceEEEEeCCCCCe
Confidence 3 445555555555555
Q ss_pred EEEee-CCeEEEEECCCCeEEEEeeC-----CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcc-cceeeeeeccccCCe
Q 001176 852 VMSAS-GGKVSLFNMMTFKVMTMFMS-----PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTKLKGHQNRI 924 (1132)
Q Consensus 852 la~~s-dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~l~~h~~~V 924 (1132)
|++|+ |++|++||+... .+..+.. +...+.+++|+| ++..+. ... .+.+|+.. ++.++..+.+|...|
T Consensus 412 l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V 486 (524)
T 2j04_B 412 VLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-KDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINI 486 (524)
T ss_dssp CEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCS-SSCEEE-ECC--CCCCCC-------------CCCSC
T ss_pred EEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCC-CCCeEE-ccC--CceecccccCCcceeeecCCCceE
Confidence 55555 555555555432 1111110 122467889999 776552 222 34444443 567788899999999
Q ss_pred eEEEEcCCCC---EEEEEcCCCcEEEEECCC
Q 001176 925 TGLAFSPTLN---ALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 925 ~~l~~spdg~---~l~s~~~D~~i~iwd~~~ 952 (1132)
.+++|+|++. ++|+|+.||.|+||++..
T Consensus 487 ~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 487 TCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 9999999964 999999999999999875
No 54
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.8e-34 Score=330.11 Aligned_cols=297 Identities=14% Similarity=0.166 Sum_probs=246.8
Q ss_pred ccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 333 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 333 ~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
+......+. |...|++++|+|++..+|++|+.||.|+|||+.+++..... ...+|...|.++
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~ 124 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGM 124 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEE
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEE
Confidence 345566776 99999999999999337999999999999999987654320 134699999999
Q ss_pred EEcC-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe
Q 001176 412 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 490 (1132)
Q Consensus 412 ~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 490 (1132)
+|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||+ +++.+..+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence 9999 789999999999999999996 44443333345568899999999999 8999999999999998 68888999
Q ss_pred cCCCCCeEEEEeeccCCcc-EEEEEecCCeEEEEEcCC----CCceEEecCCCCeEEEEEEcC-CCCEEEEEecCCCCCC
Q 001176 491 EGHEAPVYSVCPHHKESIQ-FIFSTAIDGKIKAWLYDY----LGSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGES 564 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~-~l~s~s~dg~i~~wd~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~ 564 (1132)
.+|...|.+++|+|++ . ++++++.|+.|++||+++ ......+ .|...|.+++|+| ++++|++++. ++
T Consensus 201 ~~h~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~ 273 (383)
T 3ei3_B 201 KLHKAKVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN 273 (383)
T ss_dssp ECSSSCEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred ccCCCcEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence 9999999999998865 5 999999999999999997 3334444 6888999999999 9999999975 78
Q ss_pred eEEEEeCCCCceeeeeccccC----------------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC
Q 001176 565 HLVEWNESEGAIKRTYSGFRK----------------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 628 (1132)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1132)
.|++||+++++....+.+|.. ..+..++|+|++++ +++.|+.|++||+.+++.+..+..+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 899999999887777665431 13344666666665 667899999999999999999987655
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 629 LPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
...+..++|+|++++|++++ ||.|++|++.+
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55677889999999999997 89999999864
No 55
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7e-34 Score=325.42 Aligned_cols=251 Identities=18% Similarity=0.305 Sum_probs=212.1
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeeccc------------------CCEEEEEEecCCCc
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV------------------GGVNDIAFAHPNKQ 464 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~------------------~~v~~v~~s~d~~~ 464 (1132)
+|.+.|.+++|||||++||+|+ ++.+++|++.+++.+. .+..|. ..|.+++|+|+++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 4999999999999999999986 6789999999987654 233332 2499999999999
Q ss_pred EEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEE
Q 001176 465 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 544 (1132)
Q Consensus 465 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 544 (1132)
+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG--DKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC--CEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 89999999999999999999999999999999999998855 899999999999999999887766665 45679999
Q ss_pred EEcC-CCCEEEEEecCCCCCCeEEEEeCCCCceeeee-------ccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 001176 545 AYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTY-------SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 545 ~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1132)
+|+| +++++++++. ++.|++||+++++.+..+ .+|.. .|.+++|+|++++|++++.|+.|++||+.+
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9999 8999999985 788999999999888776 45555 899999999999999999999999999976
Q ss_pred Ce------------eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccc
Q 001176 617 MN------------MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670 (1132)
Q Consensus 617 ~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (1132)
.. +...+..|. ..|.+++|+|++.+|++|+.|+.|++||..++ +....+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~ 350 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHK--DFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQG 350 (393)
T ss_dssp -------------CEEEEEECCS--SCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEEC
T ss_pred CCCcccccCCCCCcceEEEeccc--CcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECC
Confidence 32 344555554 47999999999999999999999999999887 44444443
No 56
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.7e-33 Score=327.29 Aligned_cols=319 Identities=18% Similarity=0.302 Sum_probs=274.3
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +. ++++|+.||+|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 5678887643 355579999999999999999999987665 678999999999998 45 799999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
+.+++.+..+.+|...|.++++++ ..+++++.||.|++||+.+++....+..|...|.++++ +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHE----KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEecC----CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 999999999999999999999853 68999999999999999999999899999999999999 7889999875
Q ss_pred CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCC
Q 001176 561 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 640 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1132)
++.|++||+++++.+..+.+|.. .+.++.| ++.++++++.|+.|++||+.+++.+..+..+.. .+.++.+ +
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~--~ 328 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--K 328 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE--E
T ss_pred --CCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE--e
Confidence 78899999999999999998877 8999998 788999999999999999999999998887644 5666665 5
Q ss_pred CCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccC
Q 001176 641 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 720 (1132)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1132)
++++++++.||.|++||+.++ +....+..+
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~------------------------------------------------- 358 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKTG-QCLQTLQGP------------------------------------------------- 358 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC-CEEEEECST-------------------------------------------------
T ss_pred CCEEEEEeCCCeEEEEECCCC-cEEEEEccC-------------------------------------------------
Confidence 779999999999999998766 222211110
Q ss_pred ccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeecc
Q 001176 721 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 800 (1132)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~ 800 (1132)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEe-----
Q 001176 801 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF----- 874 (1132)
Q Consensus 801 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~----- 874 (1132)
..| ...|.+++|+ ++++++++ ||.|++||+.+++.+..+
T Consensus 359 --------------------------------~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 403 (445)
T 2ovr_B 359 --------------------------------NKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 403 (445)
T ss_dssp --------------------------------TSC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT
T ss_pred --------------------------------CCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecccc
Confidence 004 6678888884 68899998 899999999999998888
Q ss_pred eCCCCCeEEEEEeCCCCCeEEEEeCCCc----EEEEEccc
Q 001176 875 MSPPPAATFLAFHPQDNNIIAIGMEDSS----VQIYNVRV 910 (1132)
Q Consensus 875 ~~~~~~i~~l~~sp~~~~~lasg~~dg~----v~iwd~~~ 910 (1132)
.+|.+.|.+++|+| ++.++|+|+.||+ |.|||+..
T Consensus 404 ~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 404 GGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp GGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 46788999999999 8999999999998 99999864
No 57
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.2e-33 Score=328.02 Aligned_cols=317 Identities=20% Similarity=0.331 Sum_probs=274.4
Q ss_pred eeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEE
Q 001176 445 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 524 (1132)
Q Consensus 445 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd 524 (1132)
.+.+|.+.|.. +++++++ +|++|+.||.|++||+.+++.+..+.+|...|.++++++ .++++++.||+|++||
T Consensus 113 ~l~~h~~~v~~-~~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKVWN 185 (445)
T ss_dssp EEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEEEE
T ss_pred EecccCCCcEE-EEEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC----CEEEEEeCCCeEEEEE
Confidence 57789887533 3555677 899999999999999999999999999999999999962 6999999999999999
Q ss_pred cCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE
Q 001176 525 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 604 (1132)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 604 (1132)
+.+++....+..|...|.+++++ ++.+++++. ++.|++||+.+++.+..+.+|.. .+.+++| +++++++++
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEc
Confidence 99998888999999999999995 567888875 78899999999999999998877 8999988 688999999
Q ss_pred cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCC
Q 001176 605 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 684 (1132)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1132)
.||.|++||+.+++.+..+..|.. .|.+++| ++.++++++.||.|++||+.++ +....+.+
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~-------------- 317 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHTN--RVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCIHTLTG-------------- 317 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSS--CEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEEEEECC--------------
T ss_pred CCCEEEEEECCCCcEeEEecCCCC--ceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEEEEEcC--------------
Confidence 999999999999999999886644 7889988 7899999999999999998766 21111110
Q ss_pred CCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecC
Q 001176 685 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 764 (1132)
Q Consensus 685 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~ 764 (1132)
T Consensus 318 -------------------------------------------------------------------------------- 317 (445)
T 2ovr_B 318 -------------------------------------------------------------------------------- 317 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEE
Q 001176 765 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 844 (1132)
Q Consensus 765 ~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~ 844 (1132)
| ...+.++.
T Consensus 318 ----------------------------------------------------------------------~-~~~v~~~~ 326 (445)
T 2ovr_B 318 ----------------------------------------------------------------------H-QSLTSGME 326 (445)
T ss_dssp ----------------------------------------------------------------------C-CSCEEEEE
T ss_pred ----------------------------------------------------------------------C-cccEEEEE
Confidence 2 44455555
Q ss_pred EeeCCCEEEEee-CCeEEEEECCCCeEEEEeeC---CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeee---
Q 001176 845 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--- 917 (1132)
Q Consensus 845 ~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l--- 917 (1132)
+ +++++++++ ||.|++||+.+++.+..+.+ |...|++++|++ ++|++|+.||.|++||+.+++.+..+
T Consensus 327 ~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 401 (445)
T 2ovr_B 327 L--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTL 401 (445)
T ss_dssp E--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEEC
T ss_pred E--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeecc
Confidence 4 567888888 89999999999999999886 888999999964 69999999999999999999988887
Q ss_pred --ccccCCeeEEEEcCCCCEEEEEcCCCc----EEEEECCC
Q 001176 918 --KGHQNRITGLAFSPTLNALVSSGADAQ----LCMWSIDK 952 (1132)
Q Consensus 918 --~~h~~~V~~l~~spdg~~l~s~~~D~~----i~iwd~~~ 952 (1132)
.+|.+.|++++|+|++.++++++.||+ |.+||++.
T Consensus 402 ~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 402 ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 578899999999999999999999998 99999975
No 58
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.5e-33 Score=313.79 Aligned_cols=312 Identities=18% Similarity=0.290 Sum_probs=243.8
Q ss_pred EEeCCCe--EEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-----EEEEecCCC
Q 001176 422 VAFSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHE 494 (1132)
Q Consensus 422 s~~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~h~ 494 (1132)
+|...|+ +.++...+ +.+....+|+||.+.|++|+|+|++.. +|+||+.|++|+|||+.+++ +...+.+|.
T Consensus 9 ~g~d~g~~~~~~~~~~~-~~~~l~~tL~GH~~~V~~v~~sp~~~~-~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~ 86 (340)
T 4aow_A 9 SGVDLGTENLYFQSMMT-EQMTLRGTLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 86 (340)
T ss_dssp ------------------CEEEEEEEECCCSSCEEEEEECTTCTT-EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS
T ss_pred cccCCCCccEEEEEccC-CceEEEEEECCccCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC
Confidence 3333444 33344333 333344578999999999999998533 89999999999999987643 567889999
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
..|.+++|+|+ +.+|++++.|+.|++|+............+...+..+.++++++++++++. ++.+++||....
T Consensus 87 ~~V~~~~~s~d--g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----d~~~~~~d~~~~ 160 (340)
T 4aow_A 87 HFVSDVVISSD--GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR----DKTIKLWNTLGV 160 (340)
T ss_dssp SCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSC
T ss_pred CCEEEEEECCC--CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC----CCeEEEEEeCCC
Confidence 99999999875 489999999999999999998888888888889999999999999999975 778999998866
Q ss_pred ceee-eeccccCCceEEEEEeCCC--CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCC
Q 001176 575 AIKR-TYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 651 (1132)
Q Consensus 575 ~~~~-~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1132)
.... ...+|.. .+..++|++++ ..+++++.|+.|++||+.+++.+..+..|.. .|.+++|+|++++|++|+.||
T Consensus 161 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 161 CKYTVQDESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG--YLNTVTVSPDGSLCASGGKDG 237 (340)
T ss_dssp EEEEECSSSCSS-CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTC
T ss_pred ceEEEEeccccC-cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC--cEEEEEECCCCCEEEEEeCCC
Confidence 5443 3445555 89999998875 5678899999999999999999999887754 899999999999999999999
Q ss_pred cEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccc
Q 001176 652 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLV 731 (1132)
Q Consensus 652 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1132)
.|++||+.+. +....+.
T Consensus 238 ~i~iwd~~~~-~~~~~~~-------------------------------------------------------------- 254 (340)
T 4aow_A 238 QAMLWDLNEG-KHLYTLD-------------------------------------------------------------- 254 (340)
T ss_dssp EEEEEETTTT-EEEEEEE--------------------------------------------------------------
T ss_pred eEEEEEeccC-ceeeeec--------------------------------------------------------------
Confidence 9999998765 1111100
Q ss_pred ccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccc
Q 001176 732 DVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATA 811 (1132)
Q Consensus 732 ~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 811 (1132)
T Consensus 255 -------------------------------------------------------------------------------- 254 (340)
T 4aow_A 255 -------------------------------------------------------------------------------- 254 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEe---------eCCCCCeE
Q 001176 812 NVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF---------MSPPPAAT 882 (1132)
Q Consensus 812 ~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~---------~~~~~~i~ 882 (1132)
+ ...+.+++|+|++.+++++.|+.|++||+.++..+..+ .+|...|+
T Consensus 255 -----------------------~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~ 310 (340)
T 4aow_A 255 -----------------------G-GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCT 310 (340)
T ss_dssp -----------------------C-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEE
T ss_pred -----------------------C-CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEE
Confidence 1 33566777777777666666788888887776665554 36888999
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEEcccce
Q 001176 883 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 912 (1132)
Q Consensus 883 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 912 (1132)
+++|+| ++++||+|+.||.|+|||+.+|+
T Consensus 311 ~l~~s~-dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 311 SLAWSA-DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEECC-CCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999 89999999999999999999885
No 59
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=4e-33 Score=360.27 Aligned_cols=530 Identities=12% Similarity=0.011 Sum_probs=373.4
Q ss_pred ccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcC------CCcEEEEecCCCccccccceeeeeccccccccccccc
Q 001176 328 SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 401 (1132)
Q Consensus 328 ~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1132)
.++...++......|...|.+++|||||++ ||.++. +..|++|++.+++... +
T Consensus 37 ~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~~~--------------------l 95 (1045)
T 1k32_A 37 EHDLKSGSTRKIVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEIKR--------------------I 95 (1045)
T ss_dssp EEETTTCCEEEEECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEEEE--------------------C
T ss_pred EEECCCCcEEEeeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCeEE--------------------c
Confidence 344444554444459999999999999995 554432 3489999998876322 5
Q ss_pred CCCCcCe-------EEEEEcCCCCeEEEEeCC------CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEE
Q 001176 402 NDAAISV-------NRCVWGPDGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 468 (1132)
Q Consensus 402 ~~h~~~V-------~~v~~spdg~~las~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~ 468 (1132)
..|...+ .+++|||||+++++++.+ ..|.+|++.++... .+..+ ....++|+| | +++
T Consensus 96 t~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~----~l~~~--~~~~~~~sp-G---~l~ 165 (1045)
T 1k32_A 96 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV----PLNLG--PATHILFAD-G---RRV 165 (1045)
T ss_dssp CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE----ECCSC--SCSEEEEET-T---EEE
T ss_pred ccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE----EecCC--CcceeeeCC-C---EEE
Confidence 6688777 999999999977777754 35888888776432 23333 345678999 6 466
Q ss_pred EEcC------------CCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC-CceEEec
Q 001176 469 TCGD------------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYD 535 (1132)
Q Consensus 469 s~~~------------dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~ 535 (1132)
+++. +....+|....+.....+.+|...+.++.|+++ .++++++.|+.+++|.++.. .....+.
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d---~l~~~~~~dg~~~l~~~~~~g~~~~~l~ 242 (1045)
T 1k32_A 166 IGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH---RIYFITDIDGFGQIYSTDLDGKDLRKHT 242 (1045)
T ss_dssp EEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT---EEEEEECTTSSCEEEEEETTSCSCEECC
T ss_pred EeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC---EEEEEEeccCceEEEEEeCCCCcceEec
Confidence 6642 335667754433445666899999999999764 57778888999999987653 3344444
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc----------CCceEEEEEe-CCCCEEEEEE
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR----------KRSLGVVQFD-TTRNRFLAAG 604 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~v~~~~~~-~~~~~l~~~~ 604 (1132)
.+. .+...+|+|||++|+.+. ++.|++||+.... +..+.++. ...+..++|+ |+|+++++++
T Consensus 243 ~~~-~~~~~~~SpDG~~la~~~-----~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~ 315 (1045)
T 1k32_A 243 SFT-DYYPRHLNTDGRRILFSK-----GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS 315 (1045)
T ss_dssp CCC-SSCEEEEEESSSCEEEEE-----TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE
T ss_pred CCC-CcceeeEcCCCCEEEEEe-----CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE
Confidence 443 456779999999998874 6679999995443 33554421 1157889999 9999999887
Q ss_pred cCCeEEEEECCCCeeEEEEeCCCCCC-CcceEEEcCCCCEEEEEeCCCcEE-EEEcCCcceeeeeccccccccccCCCCC
Q 001176 605 DEFQIKFWDMDNMNMLTTVDADGGLP-ASPRLRFNKEGSLLAVTTSDNGIK-ILANSDGVRLLRMLEGRAMDKNRCPSEP 682 (1132)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1132)
++.|++|+..+++... +..+ .. .+..++|+ ||+.|++++.++.+. +|++.++ ... .+.
T Consensus 316 -~~~i~~~~~~~~~~~~-~~~~--~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~-~~~-~l~------------- 375 (1045)
T 1k32_A 316 -RGQAFIQDVSGTYVLK-VPEP--LRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG-KAE-KFE------------- 375 (1045)
T ss_dssp -TTEEEEECTTSSBEEE-CSCC--SCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC-CEE-ECC-------------
T ss_pred -cCEEEEEcCCCCceEE-ccCC--CcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC-Cce-Eec-------------
Confidence 8899999998877554 3322 23 67899999 999999999888888 8887655 111 110
Q ss_pred CCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEe
Q 001176 683 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 762 (1132)
Q Consensus 683 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~ 762 (1132)
T Consensus 376 -------------------------------------------------------------------------------- 375 (1045)
T 1k32_A 376 -------------------------------------------------------------------------------- 375 (1045)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE
Q 001176 763 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 842 (1132)
Q Consensus 763 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~ 842 (1132)
.+...+..++|+|||+.|++++.++.+++||+. ++..... ..+ | ...+.+
T Consensus 376 ----~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~----------------------tg~~~~~-~~~--~-~~~v~~ 425 (1045)
T 1k32_A 376 ----ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE----------------------TGKPTVI-ERS--R-EAMITD 425 (1045)
T ss_dssp ----CCCCSEEEEEECTTSSEEEEEETTSEEEEEETT----------------------TCCEEEE-EEC--S-SSCCCC
T ss_pred ----CCccceeeeEECCCCCEEEEECCCCeEEEEECC----------------------CCceEEe-ccC--C-CCCccc
Confidence 133567889999999999999999999999764 3332221 112 4 677899
Q ss_pred EEEeeCCCEEEEee-CC----------eEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc
Q 001176 843 IALSKNDSYVMSAS-GG----------KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 911 (1132)
Q Consensus 843 ~~~s~dg~~la~~s-dg----------~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 911 (1132)
++|||||++|++++ ++ .|++||+.+++ ...+..|...+.+++|+| +|++|++++.++...+|+....
T Consensus 426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSS
T ss_pred eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCCcCcchhcc
Confidence 99999999998886 44 89999999887 677778888899999999 8999999999999999987644
Q ss_pred eeeeeeccccCCeeEEEEcCCCCEE--EEEcCC-CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE
Q 001176 912 EVKTKLKGHQNRITGLAFSPTLNAL--VSSGAD-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 912 ~~~~~l~~h~~~V~~l~~spdg~~l--~s~~~D-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
... ..+...+..+.+++++... +..+.+ .....|++..... . +.....+. ..+..++|+|||+++++
T Consensus 504 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-~---~~~l~~~~---~~~~~~~~s~dg~~~~~ 573 (1045)
T 1k32_A 504 NFS---FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK-R---SSPINVDP---GDYRMIIPLESSILIYS 573 (1045)
T ss_dssp CEE---CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGG-G---CEECSCCC---BCEEEEEECSSEEEEEE
T ss_pred ccc---cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhH-c---eEEcCCCC---CChhheEEcCCCeEEEE
Confidence 322 2234556667777666543 222222 2223455543211 1 11111222 45789999999987774
Q ss_pred ------------E--eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcc
Q 001176 989 ------------V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1047 (1132)
Q Consensus 989 ------------~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~ 1047 (1132)
+ ....+.+||+.......+. ..+.+++|||||++|++++.+ .|++||+.+++
T Consensus 574 ~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 574 VPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ecccCcccccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 2456888888544444432 468899999999999999866 89999999887
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.9e-33 Score=328.21 Aligned_cols=320 Identities=19% Similarity=0.306 Sum_probs=272.7
Q ss_pred cCCCCcCe-EEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 401 LNDAAISV-NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 401 ~~~h~~~V-~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
+.+|...| .++.+ ++++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|++ .+++|+.||+|++|
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 188 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEEE
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEE
Confidence 56788875 55555 67899999999999999999987554 678999999999999887 58999999999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-----------------------eEEecC
Q 001176 480 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-----------------------RVDYDA 536 (1132)
Q Consensus 480 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------------------~~~~~~ 536 (1132)
|+.+++.+..+.+|...|.+++|++.+++.++++++.||.|++||+++... ...+..
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 999999999999999999999999877889999999999999999987653 334566
Q ss_pred CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 001176 537 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 537 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1132)
|...+.++ +++++++++++. ++.|++||+.+++.+..+.+|.. .|.+++|+|+++++++++.||.|++||+.+
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ccceEEEE--cCCCCEEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 77777766 678899999975 77899999999999999999877 899999999999999999999999999999
Q ss_pred CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCC
Q 001176 617 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 696 (1132)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 696 (1132)
++.+..+..|.. .|.+++|+ +.+|++++.||.|++||+.++.....
T Consensus 342 ~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~------------------------------ 387 (464)
T 3v7d_B 342 GELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS------------------------------ 387 (464)
T ss_dssp TEEEEEECCCSS--CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE------------------------------
T ss_pred CcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee------------------------------
Confidence 999999987754 78999997 57999999999999999875411000
Q ss_pred ccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEE
Q 001176 697 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 776 (1132)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 776 (1132)
T Consensus 388 -------------------------------------------------------------------------------- 387 (464)
T 3v7d_B 388 -------------------------------------------------------------------------------- 387 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee
Q 001176 777 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 856 (1132)
Q Consensus 777 ~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s 856 (1132)
+ . | ...+..++|+++++++++++
T Consensus 388 ~-----------------------------------------------------~---~-~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 388 Y-----------------------------------------------------H---H-TNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp E-----------------------------------------------------E---C-TTCCCEEEEEECSSEEEEEE
T ss_pred e-----------------------------------------------------c---C-CCCccEEEEEeCCCEEEEec
Confidence 0 0 1 44566788999999999999
Q ss_pred CCeEEEEECCCCeEEEE-eeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEc
Q 001176 857 GGKVSLFNMMTFKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV 908 (1132)
Q Consensus 857 dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~ 908 (1132)
||.|++||+.+++.+.. +..|...|.+++|+ +..++++++.||.+.+|-+
T Consensus 411 dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 411 ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEEe
Confidence 99999999999999886 67788999999997 4567777778887666543
No 61
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.7e-34 Score=328.65 Aligned_cols=297 Identities=12% Similarity=0.142 Sum_probs=253.7
Q ss_pred eEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 336 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 336 ~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
....+. |.+.|++++|+| + +|++|+.||.|+|||+.+++...... ....+.+|...|.+++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~ 71 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDVL 71 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEEe
Confidence 345565 999999999999 4 79999999999999999876211100 001255799999999999
Q ss_pred CC----C---CeEEEEeCCCeEEEEEecCCCc-----eeeeeeeecc-----cCCEEEEEEe----cCCCcEE-EEEEcC
Q 001176 415 PD----G---LMLGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAH-----VGGVNDIAFA----HPNKQLC-IVTCGD 472 (1132)
Q Consensus 415 pd----g---~~las~~~dg~i~iwd~~~~~~-----~~~~~~l~~h-----~~~v~~v~~s----~d~~~~~-l~s~~~ 472 (1132)
|+ | ++|++++.||.|++||+.+++. +. .+..| ...|.+++|+ |+++ + |++++.
T Consensus 72 ~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~ 146 (397)
T 1sq9_A 72 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDV 146 (397)
T ss_dssp EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEET
T ss_pred cccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeC
Confidence 99 9 9999999999999999998875 43 56677 5899999999 9998 8 999999
Q ss_pred CCcEEEEECCC------CeEEE-----Ee-------cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001176 473 DKMIKVWDVVA------GRKQY-----TF-------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 534 (1132)
Q Consensus 473 dg~v~vwd~~~------~~~~~-----~~-------~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 534 (1132)
||.|++||+.+ ++.+. .+ ..|...|.+++|+| ++ ++++++.||.|++||+++......+
T Consensus 147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 223 (397)
T 1sq9_A 147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNF 223 (397)
T ss_dssp TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEE
Confidence 99999999998 66665 67 44899999999987 44 9999999999999999998888888
Q ss_pred cC---C---CCeEEEEEEcCCCCEEEEEecCCCCC---CeEEEEeCCCCceeeeecc-------------ccCCceEEEE
Q 001176 535 DA---P---GNWCTMMAYSADGTRLFSCGTSKEGE---SHLVEWNESEGAIKRTYSG-------------FRKRSLGVVQ 592 (1132)
Q Consensus 535 ~~---~---~~~v~~~~~s~~~~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~-------------~~~~~v~~~~ 592 (1132)
.. | ...|.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |.. .|.+++
T Consensus 224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 298 (397)
T 1sq9_A 224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLS 298 (397)
T ss_dssp ECCC---CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEE
T ss_pred eccccccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEE
Confidence 88 8 889999999999999999975 5 7899999999999999988 666 899999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe------CC-------------CCCCCcceEEEcCCC----------CE
Q 001176 593 FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD------AD-------------GGLPASPRLRFNKEG----------SL 643 (1132)
Q Consensus 593 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~~~~s~~~----------~~ 643 (1132)
|+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++
T Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 378 (397)
T 1sq9_A 299 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 378 (397)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCE
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccce
Confidence 99999999999999999999999999999998 44 013489999999998 79
Q ss_pred EEEEeCCCcEEEEEcCCc
Q 001176 644 LAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 644 l~~~~~dg~i~iw~~~~~ 661 (1132)
|++++.||.|++|++.++
T Consensus 379 l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 379 LCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEEETTTEEEEEEEEC-
T ss_pred EEEecCCCcEEEEEcCCC
Confidence 999999999999999876
No 62
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-33 Score=319.44 Aligned_cols=287 Identities=13% Similarity=0.130 Sum_probs=255.2
Q ss_pred eec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC
Q 001176 339 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 339 ~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
.+. |.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|.+.|.+++|+|++
T Consensus 27 ~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~ 86 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDCFT 86 (369)
T ss_dssp EEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcCCC
Confidence 344 999999999999998 699999999999999998876653 66899999999999999
Q ss_pred CeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC-----CcEEEEECCCCe-------
Q 001176 418 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAGR------- 485 (1132)
Q Consensus 418 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----g~v~vwd~~~~~------- 485 (1132)
++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+..+.
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 160 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTK 160 (369)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeecc
Confidence 999999999999999999987665 343 888999999999999 89999988 999999987653
Q ss_pred ----EEEEecCCCC--CeEEEEeeccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 486 ----KQYTFEGHEA--PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 486 ----~~~~~~~h~~--~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
.+..+..|.. .+.+++|+|++ .+|++++.||.|++||+++ ......+..+...|.+++|+|++++|++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 238 (369)
T 3zwl_B 161 VSEEPIHKIITHEGLDAATVAGWSTKG--KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR 238 (369)
T ss_dssp ECSSCSEEEECCTTCCCEEEEEECGGG--CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred cccceeeeccCCcCccceeEEEEcCCC--CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC
Confidence 3445566666 99999998854 8999999999999999998 5667788889999999999999999999975
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC--------------eEEEEECCCCeeEEEEe
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--------------QIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~ 624 (1132)
++.|++||+.+++.+..+.. .. .+..++|+|+++++++++.++ .+++||..+++.+..+.
T Consensus 239 ----d~~i~v~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 312 (369)
T 3zwl_B 239 ----DTNSFLVDVSTLQVLKKYET-DC-PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ 312 (369)
T ss_dssp ----TSEEEEEETTTCCEEEEEEC-SS-CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE
T ss_pred ----CceEEEEECCCCceeeeecC-CC-CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee
Confidence 78899999999999888883 33 799999999999999999888 89999999999999998
Q ss_pred CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 625 ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.|.. .|.+++|+|++++|++++.||.|++|++.++
T Consensus 313 ~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 313 GHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred cccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 7754 8999999999999999999999999999876
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-33 Score=310.82 Aligned_cols=289 Identities=16% Similarity=0.258 Sum_probs=252.7
Q ss_pred ccceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 333 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 333 ~~~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
+.++..++. |.+.|++++| |+++ +|++|+.||.|++||+.+++.... +..|...|.++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~ 65 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSV 65 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEE
Confidence 346677887 9999999999 9998 699999999999999988765442 45689999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
+|+|++++|++|+.||.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+.
T Consensus 66 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 66 CYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred EECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecc
Confidence 99999999999999999999999876544445568899999999999 456 799999999999999 788888999
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEe
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 570 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 570 (1132)
.|...+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||
T Consensus 140 ~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d 211 (313)
T 3odt_A 140 AHNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVD 211 (313)
T ss_dssp CCSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEE
T ss_pred cCCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEE
Confidence 99999999999873 337999999999999999 3445556665 788999999999998 777764 78899999
Q ss_pred CCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 571 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
+++++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|+|+++ +++++.|
T Consensus 212 ~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~d 286 (313)
T 3odt_A 212 MHTGDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSD 286 (313)
T ss_dssp TTTCCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETT
T ss_pred CCchhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCC
Confidence 999999999998887 89999999999 689999999999999999999999987754 799999999998 6679999
Q ss_pred CcEEEEEcCCc
Q 001176 651 NGIKILANSDG 661 (1132)
Q Consensus 651 g~i~iw~~~~~ 661 (1132)
|.|++|++.++
T Consensus 287 g~i~iw~~~~~ 297 (313)
T 3odt_A 287 NLVRIFSQEKS 297 (313)
T ss_dssp SCEEEEESCGG
T ss_pred CcEEEEeCCCC
Confidence 99999999887
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.6e-32 Score=322.86 Aligned_cols=283 Identities=17% Similarity=0.255 Sum_probs=246.0
Q ss_pred eEEeec-CCCCe-eEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 336 VVRTLN-QGSNV-MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 336 ~~~~l~-h~~~V-~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
...++. |...| .|+.| +++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.+++|
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~ 170 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKY 170 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEE
Confidence 344555 77764 66666 455 799999999999999999876653 6689999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec--CCCcEEEEEEcCCCcEEEEECCCCeE-----
Q 001176 414 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRK----- 486 (1132)
Q Consensus 414 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~--d~~~~~l~s~~~dg~v~vwd~~~~~~----- 486 (1132)
+|++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++|+.|+.|++||+.++..
T Consensus 171 ~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~ 244 (464)
T 3v7d_B 171 AHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHG 244 (464)
T ss_dssp CSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC----
T ss_pred cCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccccc
Confidence 9988 99999999999999999987554 6788999999999995 555 899999999999999987752
Q ss_pred ------------------EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcC
Q 001176 487 ------------------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA 548 (1132)
Q Consensus 487 ------------------~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 548 (1132)
+..+.+|...|.++.. ++.++++++.||.|++||+++.+....+..|...|.+++|+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 320 (464)
T 3v7d_B 245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 320 (464)
T ss_dssp --CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET
T ss_pred ccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC
Confidence 5567889999998853 337999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC
Q 001176 549 DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 628 (1132)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1132)
+++++++++. ++.|++||+++++.+..+.+|.. .|.+++|+ ++++++++.||.|++||+.++.........
T Consensus 321 ~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-- 391 (464)
T 3v7d_B 321 ERKRCISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT-- 391 (464)
T ss_dssp TTTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT--
T ss_pred CCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC--
Confidence 9999999985 78899999999999999999887 89999997 579999999999999999998877666422
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 629 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
..+..++|++++.++++++ ||.|++||+.++
T Consensus 392 -~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 392 -NLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp -TCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred -CCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 3578899999999999998 899999999988
No 65
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1e-33 Score=322.67 Aligned_cols=293 Identities=13% Similarity=0.113 Sum_probs=247.9
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCc--cccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCe
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 419 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 419 (1132)
|.++|++++|+|+|+ +|++|+.|+.|+|||+.+++ .+.. +.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCCCCE
Confidence 888999999999998 79999999999999998875 3321 5679999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE---E-EEecCCCC
Q 001176 420 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---Q-YTFEGHEA 495 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~---~-~~~~~h~~ 495 (1132)
|++++.||.|++||+.+++... ...+..|...|.+++|+|+++ +|++++.|+.|++||+..++. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999998875432 234567999999999999998 899999999999999988762 2 33467899
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcC------------------CCCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYD------------------YLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1132)
.|.+++|+|++ .+|++++.||.|++||++ .......+..|...|.+++|+|++++|++++
T Consensus 144 ~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHPNS--VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECTTS--SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcCCC--CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 99999998854 899999999999999954 4566667778889999999999999999997
Q ss_pred cCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--CeeE---------------
Q 001176 558 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNML--------------- 620 (1132)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 620 (1132)
. ++.|++||+++++.+..+..|.. .+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 5 78899999999999999998876 89999999999877776 999999999987 4311
Q ss_pred -----------------------EEEeCCCCCCCcceEEEc-CCC---CEEEEEeCCCcEEEEEcCCcceeee
Q 001176 621 -----------------------TTVDADGGLPASPRLRFN-KEG---SLLAVTTSDNGIKILANSDGVRLLR 666 (1132)
Q Consensus 621 -----------------------~~~~~~~~~~~v~~~~~s-~~~---~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1132)
..+. ..+...|.+++|. ++| .+|++++.||.|++|++.++.++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~ 367 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 367 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCT
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhh
Confidence 1111 1345589999976 577 9999999999999999988755443
No 66
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=320.32 Aligned_cols=293 Identities=15% Similarity=0.204 Sum_probs=244.0
Q ss_pred Eeec-CCCCeeEEEEccCCCeEEEEEcC---CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 338 RTLN-QGSNVMSMDFHPQQQTILLVGTN---VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 338 ~~l~-h~~~V~~~~~spdg~~lla~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
..+. |...|++++|+|++..++++|+. ||.|+|||+.+++..... ..+|...|.+++|
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v~~~~~ 73 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPIKCGTF 73 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCEEEEEC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcEEEEEE
Confidence 3344 99999999999999878888887 999999999988754321 2258999999999
Q ss_pred cCC---CCeEEEEeCCCeEEEEEecCCC-ceeeeeeeecccCCEEEEEE------ecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 414 GPD---GLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIAF------AHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 414 spd---g~~las~~~dg~i~iwd~~~~~-~~~~~~~l~~h~~~v~~v~~------s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
+|+ |++|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++||+.+
T Consensus 74 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~ 148 (357)
T 3i2n_A 74 GATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQ 148 (357)
T ss_dssp TTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTS
T ss_pred cCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCC
Confidence 998 7999999999999999999877 443 57799999999955 67888 899999999999999999
Q ss_pred Ce-EEEEecCCCC----CeEEEEeec--cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcC---CCCEE
Q 001176 484 GR-KQYTFEGHEA----PVYSVCPHH--KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA---DGTRL 553 (1132)
Q Consensus 484 ~~-~~~~~~~h~~----~v~~i~~~~--~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l 553 (1132)
++ .+..+..|.+ .+.+++|.+ .+++.++++++.||.|++||+++..... ...+...|.+++|+| +++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l 227 (357)
T 3i2n_A 149 KDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKL 227 (357)
T ss_dssp CSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEE
T ss_pred CCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEE
Confidence 87 6788876655 899998432 2355899999999999999999877643 455778999999999 99999
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeeec-----cccCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC----------
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTYS-----GFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM---------- 617 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~---------- 617 (1132)
++++. ++.|++||+++++....+. +|.. .|.+++|+|++. ++++++.||.|++||+..+
T Consensus 228 ~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g 302 (357)
T 3i2n_A 228 VATSL----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG 302 (357)
T ss_dssp EEEES----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS
T ss_pred EEECC----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC
Confidence 99875 7889999999877665554 7766 899999999998 7999999999999998754
Q ss_pred ---------eeEEEEeCCCCCCCcceEEEcCCCCEEE-EEeCCCcEEEEEcCCc
Q 001176 618 ---------NMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDG 661 (1132)
Q Consensus 618 ---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~ 661 (1132)
+.+..+..|. ..|.+++|+|++++|+ +++.||.|++|++.+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 303 IEMGVAGSVSLLQNVTLST--QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCCCCCEEEEEEEEECCS--SCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CccccccccceeeccccCC--CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 3555666664 4899999999999998 7999999999999765
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.3e-34 Score=322.16 Aligned_cols=290 Identities=17% Similarity=0.275 Sum_probs=244.3
Q ss_pred CCCCeeEEEEccC---CCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC--
Q 001176 342 QGSNVMSMDFHPQ---QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-- 416 (1132)
Q Consensus 342 h~~~V~~~~~spd---g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-- 416 (1132)
|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.. +. ......|...|.+++|+|+
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~~------------~~~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--LQ------------SYVDADADENFYTCAWTYDSN 82 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--EE------------EEECSCTTCCEEEEEEEECTT
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--ee------------eccccCCCCcEEEEEeccCCC
Confidence 8999999999984 444566666678999999998765432 11 1112247789999999999
Q ss_pred --CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec-CCCcEEEEEEcCCCcEEEEECCCCeEEEEe---
Q 001176 417 --GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--- 490 (1132)
Q Consensus 417 --g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~--- 490 (1132)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++|+.||.|++||+.+++.+..+
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 6799999999999999999987655 5778999999999999 777 8999999999999999999999988
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe----------------------------cCCCCeEE
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY----------------------------DAPGNWCT 542 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~----------------------------~~~~~~v~ 542 (1132)
.+|...|.+++|+|++ .+|++++.||.|++||+++......+ ..|...|.
T Consensus 158 ~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 158 EGHRDEVLSADYDLLG--EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp TSCSSCEEEEEECTTS--SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccCceeEEEECCCC--CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 7899999999998854 89999999999999999876543322 23888999
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce--------------eeeeccccCCceEEEEEeCC--CCEEEEEEcC
Q 001176 543 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--------------KRTYSGFRKRSLGVVQFDTT--RNRFLAAGDE 606 (1132)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 606 (1132)
+++|+ ++++++++. ++.|++||+.++.. +..+..|.. .|.+++|+|+ +++|++++.|
T Consensus 236 ~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~d 308 (366)
T 3k26_A 236 CVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQV 308 (366)
T ss_dssp EEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECTT
T ss_pred EEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEecC
Confidence 99998 778998874 78899999987754 677777776 7999999999 9999999999
Q ss_pred CeEEEEECCCCe----eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 607 FQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 607 g~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
|.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999999875 44467766545689999999999999999999999999975
No 68
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.6e-34 Score=332.04 Aligned_cols=296 Identities=16% Similarity=0.209 Sum_probs=236.4
Q ss_pred Eeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-
Q 001176 338 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP- 415 (1132)
Q Consensus 338 ~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 415 (1132)
.... |...|+|++|+|....+||+|+.||.|+|||+.+++..... .+.+|.+.|++|+|+|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~ 175 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPL 175 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSS
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCC
Confidence 3444 78899999999965558999999999999999877643210 1568999999999998
Q ss_pred CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
++++|++|+.||+|++||++++. .........+...+.+++|+|++. +|++|+.||.|++||+. ++.+..+.+|..
T Consensus 176 ~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~ 251 (435)
T 4e54_B 176 NTNQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKK 251 (435)
T ss_dssp CTTEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSS
T ss_pred CCCEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccc
Confidence 78999999999999999998753 332222334455788999999999 89999999999999975 566778899999
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
.|.+++|+|.++ .++++++.|+.|++||+++..... ....|...|++++|+|+|++|++++. |+.|++||+.
T Consensus 252 ~v~~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~ 326 (435)
T 4e54_B 252 KVTHVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSAS 326 (435)
T ss_dssp CEEEEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESS
T ss_pred eEEeeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECC
Confidence 999999998753 589999999999999998766543 33567889999999999999999985 7889999999
Q ss_pred CCceeeeeccccCC-----ceEEEEEeCCCCEEEEEE------------cCCeEEEEECCCCeeEEEEeCCCCCCCcceE
Q 001176 573 EGAIKRTYSGFRKR-----SLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRL 635 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1132)
+++....+..|... .+....|+|++..+++++ .++.|++||..+++.+..+..+. ...|.++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~ 405 (435)
T 4e54_B 327 QWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSL 405 (435)
T ss_dssp SSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCE
T ss_pred CCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEE
Confidence 99887777655321 123456777777766654 34679999999999988875432 3367777
Q ss_pred -EEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 636 -RFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 636 -~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+|+|+|.+|++|+ |+.|++|+++++
T Consensus 406 ~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 406 NEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp EEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred EEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 6999999999876 789999999887
No 69
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-34 Score=330.92 Aligned_cols=315 Identities=13% Similarity=0.194 Sum_probs=255.2
Q ss_pred eecCCCCCCceeccCCcccceEEee-c-CCCCeeEEEEcc-CCCeEEEEEcCCCcEEEEecCC---Cccccccceeeeec
Q 001176 316 SFAGVAHTPNVYSQDDLTKTVVRTL-N-QGSNVMSMDFHP-QQQTILLVGTNVGDISLWEVGS---RERLAHKPFKVWDI 389 (1132)
Q Consensus 316 ~~~~~g~~~~~~~~d~~~~~~~~~l-~-h~~~V~~~~~sp-dg~~lla~g~~dg~v~iwd~~~---~~~~~~~~~~~~~~ 389 (1132)
.|+|++..++....-...++++.++ . |.+.|++++|+| +++ +|++|+.||+|+|||+.+ +.....
T Consensus 34 ~f~~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-------- 104 (437)
T 3gre_A 34 EFGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-------- 104 (437)
T ss_dssp GGCCCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC--------
T ss_pred hcCCccccccccccccccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce--------
Confidence 3677777776553333667888888 5 889999999999 998 799999999999999976 331110
Q ss_pred ccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEec---CCCceeee-----ee--eec--ccCCEEEEE
Q 001176 390 SAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN---PTGELRQH-----LE--IDA--HVGGVNDIA 457 (1132)
Q Consensus 390 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~---~~~~~~~~-----~~--l~~--h~~~v~~v~ 457 (1132)
....+|.+.|.+++|+|++++|++|+.||.|++||++ +++..... .. +.. +...+.++.
T Consensus 105 ---------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 175 (437)
T 3gre_A 105 ---------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMR 175 (437)
T ss_dssp ---------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEE
T ss_pred ---------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEE
Confidence 0012599999999999999999999999999999995 44433211 01 111 456677777
Q ss_pred --EecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC--CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE
Q 001176 458 --FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 533 (1132)
Q Consensus 458 --~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~ 533 (1132)
+++++. +|++|+.|+.|++||+++++.+..+.+ |...|++++|+|+ +.+|++|+.||.|++||+++......
T Consensus 176 ~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~ 251 (437)
T 3gre_A 176 AFVNEEKS--LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE--CCVLILGTTRGIIDIWDIRFNVLIRS 251 (437)
T ss_dssp EEECSSCE--EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT--SCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEcCCCC--EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC--CCEEEEEcCCCeEEEEEcCCccEEEE
Confidence 557777 899999999999999999999999998 8999999999876 48999999999999999999877777
Q ss_pred ec-CCCCeEEEEEEc----CCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc------------------------
Q 001176 534 YD-APGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------------------------ 584 (1132)
Q Consensus 534 ~~-~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------ 584 (1132)
+. .+...|.+++|+ +++.+|++++. ++.|++||+++++.+..+.++.
T Consensus 252 ~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 327 (437)
T 3gre_A 252 WSFGDHAPITHVEVCQFYGKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIR 327 (437)
T ss_dssp EBCTTCEEEEEEEECTTTCTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCC
T ss_pred EecCCCCceEEEEeccccCCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccc
Confidence 65 677799999665 46778988864 8889999999999888877542
Q ss_pred -CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC-----------------------------------C
Q 001176 585 -KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-----------------------------------G 628 (1132)
Q Consensus 585 -~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~ 628 (1132)
...|.+++|+ ++++|++++.|+.|++||+.+++....+..+. +
T Consensus 328 ~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 406 (437)
T 3gre_A 328 SLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH 406 (437)
T ss_dssp SGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------
T ss_pred cCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccc
Confidence 2258889999 77899999999999999999998877776531 4
Q ss_pred CCCcceEEEcCC--CCEEEEEeCCCcEEEEE
Q 001176 629 LPASPRLRFNKE--GSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 629 ~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~ 657 (1132)
...|++++|+++ +.+|++|+.||.|++|+
T Consensus 407 ~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 407 HDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 568999999997 78999999999999995
No 70
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.6e-33 Score=317.73 Aligned_cols=315 Identities=15% Similarity=0.206 Sum_probs=252.4
Q ss_pred EEeCCCCceeeeeccccCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC-CCCEEE
Q 001176 568 EWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLA 645 (1132)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 645 (1132)
+|+....+....+.+|.. .|.+++|+|++ ++|++|+.||.|++||+.+++....+....+...|.+++|+| ++.+|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 344556667778888877 89999999999 999999999999999999998888887545566899999999 789999
Q ss_pred EEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcC
Q 001176 646 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 725 (1132)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1132)
+++.|+.|++||+.+. . ...+..
T Consensus 136 s~~~d~~i~iwd~~~~-~-~~~~~~------------------------------------------------------- 158 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS-V-IQVFAK------------------------------------------------------- 158 (383)
T ss_dssp EEETTTEEEEEETTSC-E-EEEEEC-------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCC-c-eEEEec-------------------------------------------------------
Confidence 9999999999998642 1 110000
Q ss_pred CcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCC
Q 001176 726 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 805 (1132)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~ 805 (1132)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEE
Q 001176 806 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFL 884 (1132)
Q Consensus 806 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l 884 (1132)
. ..| ...|.+++|+|++++|++++ |+.|++||+ +++.+..+.+|...|.++
T Consensus 159 ------------------------~--~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~ 210 (383)
T 3ei3_B 159 ------------------------T--DSW-DYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHA 210 (383)
T ss_dssp ------------------------C--CCS-SCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEE
T ss_pred ------------------------c--CCC-CCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEE
Confidence 0 003 56789999999999999998 899999999 578889999999999999
Q ss_pred EEeCCCCC-eEEEEeCCCcEEEEEccc----ceeeeeeccccCCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCcccccc
Q 001176 885 AFHPQDNN-IIAIGMEDSSVQIYNVRV----DEVKTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKS 958 (1132)
Q Consensus 885 ~~sp~~~~-~lasg~~dg~v~iwd~~~----~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~ 958 (1132)
+|+| +++ +|++|+.||.|++||+.+ +..+..+ +|...|++++|+| ++++|++++.|+.|++||+.+++....
T Consensus 211 ~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 288 (383)
T 3ei3_B 211 EFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ 288 (383)
T ss_dssp EECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred EECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 9999 777 999999999999999998 5666666 6999999999999 999999999999999999998765432
Q ss_pred eeeeCC--CCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001176 959 RFIQAP--AGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG 1036 (1132)
Q Consensus 959 ~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg 1036 (1132)
...... ..+. ..+. +.|+|+ ..+..++|+|||++ +|+.||
T Consensus 289 ~~~~~~~~~~~~---~~~~-~~~~p~--------------------------------~~~~~~~~s~dg~~--s~s~d~ 330 (383)
T 3ei3_B 289 IIIHPHRQFQHL---TPIK-ATWHPM--------------------------------YDLIVAGRYPDDQL--LLNDKR 330 (383)
T ss_dssp EEECCBCCCTTS---CCCC-CEECSS--------------------------------SSEEEEECBCCTTT--CTTCCC
T ss_pred cccccccccccc---cceE-EeccCC--------------------------------CCceEEEecCCccc--ccCCCC
Confidence 211110 0111 1122 244443 34566888999988 899999
Q ss_pred cEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1037 AIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1037 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
.|++||+.+++.+..+..+ .|...+..++|+| ++.+|++|+ |+.|++||+.+
T Consensus 331 ~i~iwd~~~~~~~~~l~~~---------~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 331 TIDIYDANSGGLVHQLRDP---------NAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEEETTTCCEEEEECBT---------TBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred eEEEEecCCCceeeeecCC---------CCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 9999999999998777521 3556677789999 889999997 99999999975
No 71
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.1e-33 Score=315.70 Aligned_cols=301 Identities=11% Similarity=0.093 Sum_probs=231.9
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCC-------CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNV-------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
-.-+|+|++|+|||+ +|++|+.| +.|+||++..+.......+. ......+.+|...|.+++++
T Consensus 13 ~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE
T ss_pred CCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC
Confidence 345899999999998 78888643 36999999876543221111 11112367889999988774
Q ss_pred CCCCeEEEE-----------eCCCeEEEEEecCCCceee-ee-----eeecccCCEEEEEEecCCCcEEEEEEcCCCcEE
Q 001176 415 PDGLMLGVA-----------FSKHIVHLYTYNPTGELRQ-HL-----EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 477 (1132)
Q Consensus 415 pdg~~las~-----------~~dg~i~iwd~~~~~~~~~-~~-----~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~ 477 (1132)
++.+++| +.|+.+++|++.+...... .. ....+...+.+++|+|||+.+.+++++.|++|+
T Consensus 83 --~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 83 --KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp --TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred --CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 5566665 4578899999987653221 11 112345568999999999954455677899999
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCeEEEEEEcCCCCEEEE
Q 001176 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 478 vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
|||+.+++++..+. |...|.+++|+|+ |.++++++.+ .+++|+..++..... ...|...|.+++|+|+++++++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fspd--g~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFSTD--GKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECTT--SSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEccC--CceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 99999999998886 7788999999885 4889988855 566666666665543 3456778999999999999999
Q ss_pred EecCCCCCCeEEEEeCCCCce----eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEE-eCCCCCC
Q 001176 556 CGTSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLP 630 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~ 630 (1132)
++.++.....+++|++..+.. ...+.+|.. .|.+++|+|+|++|++|+.|+.|+|||+.+++++..+ .+|. .
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~--~ 313 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS--F 313 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS--S
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc--C
Confidence 987555455788999876643 345666666 8999999999999999999999999999999998876 5564 4
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 631 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.|++++|+|||++|++|+.|++|+||++..+
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8999999999999999999999999999755
No 72
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-32 Score=306.94 Aligned_cols=302 Identities=14% Similarity=0.163 Sum_probs=249.5
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vw 479 (1132)
.+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.||.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 377899999999999999999999999999999999987665 6788999999999999999 89999999999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecC-----CeEEEEEcCCCCc-----------eEEecCCCC--eE
Q 001176 480 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGS-----------RVDYDAPGN--WC 541 (1132)
Q Consensus 480 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~-----------~~~~~~~~~--~v 541 (1132)
|+.+++.+..+. |...|.+++|+|++ .++++++.+ +.|++||+..... ...+..+.. .+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPCG--NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTS--SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccCC--CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 999999999887 88999999998854 899999999 9999999987642 233444555 89
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeE
Q 001176 542 TMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 620 (1132)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1132)
.+++|+|+++++++++. ++.|++||+++ ++.+..+..|.. .|.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus 179 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp EEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 99999999999999875 78899999998 788888888876 8999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCcccc
Q 001176 621 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 700 (1132)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 700 (1132)
..+... ..+.+++|+|+++++++++.++...+|......
T Consensus 254 ~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------------------------- 292 (369)
T 3zwl_B 254 KKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANE-------------------------------------- 292 (369)
T ss_dssp EEEECS---SCEEEEEECSSSSEEEEEECCC-------------------------------------------------
T ss_pred eeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCC--------------------------------------
Confidence 888732 378999999999999999999865555432210
Q ss_pred ccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecC
Q 001176 701 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 780 (1132)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 780 (1132)
....+++|+...... ... + ..|...|.+++|+|+
T Consensus 293 ---------------------------------------~~~~i~~~d~~~~~~---~~~--~--~~~~~~v~~~~~s~~ 326 (369)
T 3zwl_B 293 ---------------------------------------GKFEARFYHKIFEEE---IGR--V--QGHFGPLNTVAISPQ 326 (369)
T ss_dssp -----------------------------------------CEEEEEETTTCCE---EEE--E--ECCSSCEEEEEECTT
T ss_pred ---------------------------------------CcceeEEEecCCCcc---hhh--e--ecccCcEEEEEECCC
Confidence 012455555543211 111 1 226788999999999
Q ss_pred CceEEeecccceeEEEeeccc
Q 001176 781 GLSLLALASNAVHKLWKWQRT 801 (1132)
Q Consensus 781 g~~l~~~~~dg~i~vw~~~~~ 801 (1132)
++.|++++.||.|++|++...
T Consensus 327 ~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 327 GTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp SSEEEEEETTSEEEEEEECHH
T ss_pred CCEEEEEcCCCeEEEEECccc
Confidence 999999999999999998653
No 73
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-34 Score=326.70 Aligned_cols=286 Identities=13% Similarity=0.126 Sum_probs=225.5
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCC--ccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCe
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 419 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 419 (1132)
+.+.|++++|+|+|+ +|++|+.|+.|+|||+.++ +.+.. +.+|.+.|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCCCCE
Confidence 567999999999998 7999999999999999987 33332 6789999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe---EEEEecC-CCC
Q 001176 420 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR---KQYTFEG-HEA 495 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~---~~~~~~~-h~~ 495 (1132)
|++|+.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++|+.|+.|++||+.+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998773333446778999999999999999 79999999999999999887 4678888 999
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcCCC------------------CceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL------------------GSRVDYDAPGNWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1132)
.|.+++|+|++ .+|++++.|+.|++||+... .....+ .|...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHPNN--VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECTTS--SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcCCC--CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 99999998854 89999999999999998532 233344 7888999999999999999997
Q ss_pred cCCCCCCeEEEEeCCCCce----eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe---------------
Q 001176 558 TSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--------------- 618 (1132)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------- 618 (1132)
. ++.|++||+.+++. +..+.+|.. .|.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 5 78899999999987 788888877 89999999999998888766655 66654211
Q ss_pred ------------------------eEEEEeC-----------CCCCCCcceEEEcCC-CC---EEEEEeCCCcEEEEEc
Q 001176 619 ------------------------MLTTVDA-----------DGGLPASPRLRFNKE-GS---LLAVTTSDNGIKILAN 658 (1132)
Q Consensus 619 ------------------------~~~~~~~-----------~~~~~~v~~~~~s~~-~~---~l~~~~~dg~i~iw~~ 658 (1132)
....... ..|...|.++++.+. +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 014457889987663 33 6999999999999985
No 74
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.9e-32 Score=315.30 Aligned_cols=297 Identities=14% Similarity=0.150 Sum_probs=250.4
Q ss_pred EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCC------ceEEecCCCCeEEEEEEcCC----C---CEE
Q 001176 487 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVDYDAPGNWCTMMAYSAD----G---TRL 553 (1132)
Q Consensus 487 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~------~~~~~~~~~~~v~~~~~s~~----~---~~l 553 (1132)
...+.+|...|++++|+| .+|++++.||.|++||+.... ....+..|...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 456789999999999976 699999999999999999888 67788899999999999999 9 999
Q ss_pred EEEecCCCCCCeEEEEeCCCCce-----eeeecccc----CCceEEEEEe----CCCCE-EEEEEcCCeEEEEECCC---
Q 001176 554 FSCGTSKEGESHLVEWNESEGAI-----KRTYSGFR----KRSLGVVQFD----TTRNR-FLAAGDEFQIKFWDMDN--- 616 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~-----~~~~~~~~----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~--- 616 (1132)
++++. ++.|++||+.+++. ...+..|. ...|.+++|+ |++++ |++++.||.|++||+.+
T Consensus 85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99875 77899999998887 88888874 3389999999 99999 99999999999999988
Q ss_pred ---CeeEE-----EEeC-----CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCC
Q 001176 617 ---MNMLT-----TVDA-----DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 683 (1132)
Q Consensus 617 ---~~~~~-----~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1132)
++.+. .+.. ..+...|.+++|+|++ ++++++.||.|++||+.++ +....+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~------------ 226 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFESQ------------ 226 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEECC------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEecc------------
Confidence 66655 6643 3334589999999999 9999999999999998765 222211110
Q ss_pred CCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEec
Q 001176 684 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 763 (1132)
Q Consensus 684 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~ 763 (1132)
T Consensus 227 -------------------------------------------------------------------------------- 226 (397)
T 1sq9_A 227 -------------------------------------------------------------------------------- 226 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEE
Q 001176 764 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 843 (1132)
Q Consensus 764 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~ 843 (1132)
..| .. . ...|.++
T Consensus 227 --~~h-------------------------------------------------------------~~---~-~~~i~~i 239 (397)
T 1sq9_A 227 --HSM-------------------------------------------------------------IN---N-SNSIRSV 239 (397)
T ss_dssp --C----------------------------------------------------------------C---C-CCCEEEE
T ss_pred --ccc-------------------------------------------------------------cc---c-CCccceE
Confidence 000 00 1 4467888
Q ss_pred EEeeCCCEEEEee-C---CeEEEEECCCCeEEEEeeC-------------CCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 001176 844 ALSKNDSYVMSAS-G---GKVSLFNMMTFKVMTMFMS-------------PPPAATFLAFHPQDNNIIAIGMEDSSVQIY 906 (1132)
Q Consensus 844 ~~s~dg~~la~~s-d---g~i~vwd~~~~~~~~~~~~-------------~~~~i~~l~~sp~~~~~lasg~~dg~v~iw 906 (1132)
+|+|++++|++++ | +.|++||+.+++.+..+.+ |...|.+++|+| ++++|++++.||.|++|
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFW 318 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEE
Confidence 8888888888887 7 8899999998888888888 999999999999 89999999999999999
Q ss_pred Ecccceeeeeec------cc---------------cCCeeEEEEcCCC----------CEEEEEcCCCcEEEEECCCc
Q 001176 907 NVRVDEVKTKLK------GH---------------QNRITGLAFSPTL----------NALVSSGADAQLCMWSIDKW 953 (1132)
Q Consensus 907 d~~~~~~~~~l~------~h---------------~~~V~~l~~spdg----------~~l~s~~~D~~i~iwd~~~~ 953 (1132)
|+.+++.+..+. +| ...|++++|+|++ ++|++++.|+.|++|++.++
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 999999999998 88 9999999999998 79999999999999999875
No 75
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.9e-33 Score=319.30 Aligned_cols=349 Identities=14% Similarity=0.164 Sum_probs=241.2
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeeEEEEeC-----------CCCCCC
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-----------DGGLPA 631 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~ 631 (1132)
..+++|+...++....+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++....+.. ..+...
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred CcceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 3477888888888888888877 899999999 999999999999999999998765444321 124458
Q ss_pred cceEEEcC-CCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCC
Q 001176 632 SPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 710 (1132)
Q Consensus 632 v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 710 (1132)
|.+++|+| ++.+|++++.||.|++||+.++ +....+.
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~----------------------------------------- 139 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTL-QTADVFN----------------------------------------- 139 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTT-EEEEEEE-----------------------------------------
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCC-ccceecc-----------------------------------------
Confidence 99999999 7889999999999999998766 2111110
Q ss_pred CCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeeccc
Q 001176 711 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN 790 (1132)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 790 (1132)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee---CCCEEEEee-CCeEEEEECC
Q 001176 791 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK---NDSYVMSAS-GGKVSLFNMM 866 (1132)
Q Consensus 791 g~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~---dg~~la~~s-dg~i~vwd~~ 866 (1132)
+ ...+.++++++ ++.++++++ ++.|++||+.
T Consensus 140 --------------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 140 --------------------------------------------F-EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp --------------------------------------------C-SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred --------------------------------------------C-CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 1 33345555555 455888888 8999999999
Q ss_pred CCeEEEEeeCCCCCeEEEEEeCCCCC-eEEEEeCCCcEEEEEcccce-eeeee---------------ccccCCeeEEEE
Q 001176 867 TFKVMTMFMSPPPAATFLAFHPQDNN-IIAIGMEDSSVQIYNVRVDE-VKTKL---------------KGHQNRITGLAF 929 (1132)
Q Consensus 867 ~~~~~~~~~~~~~~i~~l~~sp~~~~-~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~ 929 (1132)
+++.+..+.+|...|++++|+| ++. ++++|+.||.|++||+.++. .+..+ .+|...|++++|
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred CcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 9999999999999999999999 666 69999999999999998764 33333 678999999999
Q ss_pred cCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC-CCCceeecC
Q 001176 930 SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWS 1008 (1132)
Q Consensus 930 spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~ 1008 (1132)
+|++++|++++.|+.|++||+.+++.............. ......+.....+.+++++.++.|++||+ ++..+..+
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~- 330 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML- 330 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-
T ss_pred cCCCCEEEEecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-
Confidence 999999999999999999999987643321111111110 01222333344556666689999999999 66666665
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeC
Q 001176 1009 PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMS 1088 (1132)
Q Consensus 1009 ~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 1088 (1132)
.+|...|++++|+|++++|++|+.||.|++||+.+++.+...... .....+.|.....+.+++.
T Consensus 331 --~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 394 (408)
T 4a11_B 331 --KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET--------------TTKSQLNPAFEDAWSSSDE 394 (408)
T ss_dssp --CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred --ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce--------------EeccccccccceeecccCc
Confidence 456899999999999999999999999999999999876554311 1112333435566778889
Q ss_pred CCcEEEEecCCC
Q 001176 1089 DGAVHVVEPSDA 1100 (1132)
Q Consensus 1089 Dg~i~vW~~~~~ 1100 (1132)
|+.+++|+...-
T Consensus 395 ~~~~~~W~~~~~ 406 (408)
T 4a11_B 395 EGGTSAWSHPQF 406 (408)
T ss_dssp ------------
T ss_pred cCceeecCCccc
Confidence 999999987653
No 76
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.7e-32 Score=336.23 Aligned_cols=256 Identities=18% Similarity=0.269 Sum_probs=220.6
Q ss_pred ccCCCCcCeEEEEEcCCC-CeEEEEeCCCeEEEEEecCCCce--eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcE
Q 001176 400 LLNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg-~~las~~~dg~i~iwd~~~~~~~--~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v 476 (1132)
.+.+|.+.|++++|+|++ ++|++|+.|++|++|++.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 367899999999999964 79999999999999999875432 23346789999999999999999 89999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCeEEEEEEcCCC--C
Q 001176 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAYSADG--T 551 (1132)
Q Consensus 477 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~--~ 551 (1132)
++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||.......... ..|...|.+++|+|++ .
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDN--RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTS--SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeCCC--CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 999999999999999999999999998854 89999999999999998654332222 3577789999999987 5
Q ss_pred EEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001176 552 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 631 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1132)
.+++++. |+.|++||+++++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 533 ~l~s~s~----d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~~ 604 (694)
T 3dm0_A 533 TIVSASW----DKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SV 604 (694)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---SC
T ss_pred eEEEEeC----CCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---Cc
Confidence 7888875 78899999999999999999887 8999999999999999999999999999999988777643 36
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecc
Q 001176 632 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
|.+++|+|++.++++++ ++.|++||+.++ .....+.
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~ 640 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLK 640 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEEC
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhc
Confidence 89999999998887765 557999999988 5555443
No 77
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.6e-32 Score=299.17 Aligned_cols=252 Identities=17% Similarity=0.258 Sum_probs=213.7
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~v 478 (1132)
+.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++.. .....+.+|.++|++++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975421 123368899999999999864 77 8999999999999
Q ss_pred EECCCCe--EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCeEEEEEEcCC-----
Q 001176 479 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSAD----- 549 (1132)
Q Consensus 479 wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~----- 549 (1132)
||+.+++ .+..+.+|...|.+++|+|+.++.+|++++.|+.|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999999875568999999999999999987642 4567788999999999997
Q ss_pred --------CCEEEEEecCCCCCCeEEEEeCCCCc----eeeeeccccCCceEEEEEeCCC---CEEEEEEcCCeEEEEEC
Q 001176 550 --------GTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 550 --------~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~ 614 (1132)
+++|++++. |+.|++||+++++ ....+.+|.. .|.+++|+|++ .+|++++.|+.|++||+
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 578999885 7889999998766 5677888887 89999999985 78999999999999999
Q ss_pred CCCe---eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 615 DNMN---MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 615 ~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
.+.. ....+..+.+...|.+++|+|+|++|++++.||.|++|+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 8743 122332233445799999999999999999999999999753
No 78
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-32 Score=311.74 Aligned_cols=290 Identities=16% Similarity=0.244 Sum_probs=241.4
Q ss_pred CCCC--eeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCe
Q 001176 342 QGSN--VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 419 (1132)
Q Consensus 342 h~~~--V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 419 (1132)
|.+. +.+++|++ .. +++++.|+.|+|||+.+++.... ....|...|.+++|+|++++
T Consensus 90 ~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~~~ 148 (401)
T 4aez_A 90 IIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDGSF 148 (401)
T ss_dssp CCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTSSE
T ss_pred CcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCCCE
Confidence 5444 45566665 43 55667899999999999876542 12248899999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC-CCeEEEEecCCCCCeE
Q 001176 420 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFEGHEAPVY 498 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~h~~~v~ 498 (1132)
|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.||.|++||+. .+..+..+.+|...|.
T Consensus 149 l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 221 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC 221 (401)
T ss_dssp EEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred EEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCee
Confidence 9999999999999999987665 577999999999994 45 79999999999999998 5677888999999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee
Q 001176 499 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 499 ~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
+++|+|+ +.+|++++.||.|++||+++......+..|...|.+++|+|++..+++.+. +..++.|++||+.+++.+.
T Consensus 222 ~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~ 298 (401)
T 4aez_A 222 GLAWRSD--GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVN 298 (401)
T ss_dssp EEEECTT--SSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEE
T ss_pred EEEEcCC--CCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEE
Confidence 9999884 489999999999999999998888888899999999999998765554431 1247889999999999998
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 656 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1132)
.+..+. .+.+++|+|+++++++++ .||.|++||+.+++.........+...|.+++|+|++.+|++++.||.|++|
T Consensus 299 ~~~~~~--~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 299 TVDAGS--QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376 (401)
T ss_dssp EEECSS--CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred EEeCCC--cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 886433 799999999999999954 8999999999997766654433445589999999999999999999999999
Q ss_pred EcCCccee
Q 001176 657 ANSDGVRL 664 (1132)
Q Consensus 657 ~~~~~~~~ 664 (1132)
++.++...
T Consensus 377 ~~~~~~~~ 384 (401)
T 4aez_A 377 RVYDGDHV 384 (401)
T ss_dssp ECCC----
T ss_pred ECCCCccc
Confidence 99988433
No 79
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-33 Score=315.56 Aligned_cols=261 Identities=10% Similarity=0.059 Sum_probs=210.9
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
-..+|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence 347999999999999 799999999999 6544432 45799999999999999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC-----C
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-----P 496 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~-----~ 496 (1132)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ +|++++.||.|++||.+. ++..+. |.. .
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence 5666666654433211 22 4688999999999999 899999999999999544 667777 765 4
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-------eEEe----cCCCCeEEEEEEcCCCCEEEEEecCCCCCCe
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-------RVDY----DAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 565 (1132)
|.+++|+|+ |++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. |+.
T Consensus 132 v~svafSPD--G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~t 203 (588)
T 2j04_A 132 YHCFEWNPI--ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNS 203 (588)
T ss_dssp EEEEEECSS--SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCC
T ss_pred EEEEEEcCC--CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCe
Confidence 999999885 49999999999999999998753 3444 5677899999999999 666654 788
Q ss_pred EEEEeCCCCce---eeeec-cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE--cC
Q 001176 566 LVEWNESEGAI---KRTYS-GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF--NK 639 (1132)
Q Consensus 566 i~~wd~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s~ 639 (1132)
+++||+..+.. .+++. +|.. .|.+++|+ ++.+++++ ++.|++||+.+++......+| ...|..++| +|
T Consensus 204 VrlWd~~~~~~~~~~~tL~~~h~~-~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh--~~~V~~va~~~s~ 277 (588)
T 2j04_A 204 VFSMTVSASSHQPVSRMIQNASRR-KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS--LENFHIIPLNHEK 277 (588)
T ss_dssp EEEECCCSSSSCCCEEEEECCCSS-CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC--CSCCCEEEETTCS
T ss_pred EEEEECCCCccccceeeecccccC-cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC--CceEEEEEeeeCC
Confidence 99999988774 34564 5554 89999999 68888887 699999999988874444344 458999999 99
Q ss_pred CCCEEEEEeCCCcEEEEEcC
Q 001176 640 EGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~ 659 (1132)
++..+++++.||+ ++|...
T Consensus 278 d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 278 ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SCEEEEECSSCEE-EEEESS
T ss_pred CCCEEEEEcCCCC-EEEeec
Confidence 9999999999999 999864
No 80
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.2e-32 Score=320.10 Aligned_cols=300 Identities=16% Similarity=0.202 Sum_probs=226.7
Q ss_pred eeeccccCCceEEEEEeCC-CCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEE
Q 001176 578 RTYSGFRKRSLGVVQFDTT-RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 655 (1132)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 655 (1132)
.....|.. .|++++|+|. +++|++|+.||.|+|||+.+++....+...++...|.+++|+| ++.+|++++.||+|++
T Consensus 113 ~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 113 QKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred ccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 34445555 7999999994 5789999999999999999887666666555566899999998 7899999999999999
Q ss_pred EEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccc
Q 001176 656 LANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP 735 (1132)
Q Consensus 656 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1132)
||+.++ .. ..+..
T Consensus 192 wd~~~~-~~-~~~~~----------------------------------------------------------------- 204 (435)
T 4e54_B 192 QDFKGN-IL-RVFAS----------------------------------------------------------------- 204 (435)
T ss_dssp EETTSC-EE-EEEEC-----------------------------------------------------------------
T ss_pred eeccCC-ce-eEEec-----------------------------------------------------------------
Confidence 998654 10 00000
Q ss_pred ccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccccc
Q 001176 736 RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 815 (1132)
Q Consensus 736 ~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 815 (1132)
.
T Consensus 205 -------------------------------------------~------------------------------------ 205 (435)
T 4e54_B 205 -------------------------------------------S------------------------------------ 205 (435)
T ss_dssp -------------------------------------------C------------------------------------
T ss_pred -------------------------------------------c------------------------------------
Confidence 0
Q ss_pred ccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeE
Q 001176 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 894 (1132)
Q Consensus 816 ~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~l 894 (1132)
..+ ...+.+++|+|++++|++|+ ||.|++||+. ++.+..+.+|...|++++|+|++..++
T Consensus 206 -----------------~~~-~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 206 -----------------DTI-NIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp -----------------SSC-SCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred -----------------CCC-CccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEE
Confidence 001 44567889999999999998 8999999986 466778899999999999999545689
Q ss_pred EEEeCCCcEEEEEcccceeeee---eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCC
Q 001176 895 AIGMEDSSVQIYNVRVDEVKTK---LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 971 (1132)
Q Consensus 895 asg~~dg~v~iwd~~~~~~~~~---l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 971 (1132)
++|+.|+.|+|||+.+.+.... ..+|...|++++|+|+|++|++++.|++|++||+.+++......... .... ..
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~-~~~~-~~ 344 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP-HRHF-QH 344 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC-CCCC-SS
T ss_pred EEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc-cccc-cc
Confidence 9999999999999988764433 46799999999999999999999999999999999877543221111 0000 00
Q ss_pred CCceeEEECCCCcEEEEE-------------eCCeEEEEeC-CCCceeecCCCCCCCCCeEEE-EEccCCCEEEEEecCC
Q 001176 972 VGETKVQFHNDQTHLLVV-------------HESQISVYDS-KLECSRSWSPKDALPAPISSA-IYSCDGLLVYAGFCDG 1036 (1132)
Q Consensus 972 ~~v~~~~~s~dg~~l~~~-------------~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i-~~s~dg~~las~~~dg 1036 (1132)
..+....|+|++..++++ .++.|++||. +++.+..+. .+|...|.++ +|+|||++||+|+ |+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~--~~~~~~v~s~~~fspdg~~lasg~-d~ 421 (435)
T 4e54_B 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY--DPESSGISSLNEFNPMGDTLASAM-GY 421 (435)
T ss_dssp SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC--CSSCCCCCCEEEECTTSSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe--CCCCCcEEEEEEECCCCCEEEEEc-CC
Confidence 123345666666665553 2357999999 666666553 3457888887 6999999999886 88
Q ss_pred cEEEEeCCCcce
Q 001176 1037 AIGVFDAETLRF 1048 (1132)
Q Consensus 1037 ~i~vwd~~~~~~ 1048 (1132)
+|+|||+++|+.
T Consensus 422 ~i~iW~~~~gk~ 433 (435)
T 4e54_B 422 HILIWSQQEART 433 (435)
T ss_dssp EEEECCCC----
T ss_pred cEEEEECCcCee
Confidence 999999999875
No 81
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-31 Score=310.09 Aligned_cols=282 Identities=15% Similarity=0.258 Sum_probs=242.3
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 424 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 424 (1132)
-++.|+||+++ +||+|. |++|+|||+.+|+.... + .+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~--~---------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQL--L---------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEE--E---------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEE--E---------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999864 688876 89999999999986542 1 1457889999999999999999999
Q ss_pred CCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEecCCCCCeEEEEee
Q 001176 425 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPH 503 (1132)
Q Consensus 425 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~i~~~ 503 (1132)
.||+|+|||+.+++.+. .+.+|...+.+++++ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987665 678999999988875 55 8999999999999998864 4567889999999999998
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCeEEEEEEcCCCCE-EEEEecCCCCCCeEEEEeCCCCceee
Q 001176 504 HKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 504 ~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
+.+ .++++++.|+.+++|+...+.. ......+...|.+++|+|++.. +++++. ..|+.|++||+.++++..
T Consensus 240 ~~g--~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 PDG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp TTS--SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred CCC--CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 755 8999999999999999987653 3466778889999999997754 445443 347899999999999999
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 656 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1132)
.+..+. .+.++.|+++++.+++++ .|+.|++||+.+++++..+.+|.. .|.+++|+|||++|++|+.|++|++|
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 888765 588899999999998865 789999999999999999987754 89999999999999999999999999
Q ss_pred EcCCc
Q 001176 657 ANSDG 661 (1132)
Q Consensus 657 ~~~~~ 661 (1132)
|+.+.
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 99765
No 82
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.4e-32 Score=309.19 Aligned_cols=249 Identities=14% Similarity=0.205 Sum_probs=213.0
Q ss_pred cCCCCcCeEEEEEcCC----CCeEEEEeCCCeEEEEEecCCCceeeeeeee--cccCCEEEEEEecC----CCcEEEEEE
Q 001176 401 LNDAAISVNRCVWGPD----GLMLGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHP----NKQLCIVTC 470 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spd----g~~las~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~v~~v~~s~d----~~~~~l~s~ 470 (1132)
..+|.++|.+++|+|+ ...+++++.++.|++||+.+++.+....... .|...|.+++|+|+ +. +|++|
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~~ 91 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAVA 91 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEEe
Confidence 5689999999999984 4566666677799999999877665443332 26688999999999 55 89999
Q ss_pred cCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCeEEEEEEc
Q 001176 471 GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAYS 547 (1132)
Q Consensus 471 ~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s 547 (1132)
+.||.|++||+.+++.+..+.+|...|.+++|+|. ++.+|++++.||.|++||+++++....+ ..|...|.+++|+
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 99999999999999999999999999999999883 3389999999999999999998887777 6788999999999
Q ss_pred CCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc----------------------------ccCCceEEEEEeCCCCE
Q 001176 548 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG----------------------------FRKRSLGVVQFDTTRNR 599 (1132)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~~ 599 (1132)
|++++|++++. ++.|++||+++++....+.. |.. .|.+++|+ +++
T Consensus 171 ~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~~~ 243 (366)
T 3k26_A 171 LLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN-YVDCVRWL--GDL 243 (366)
T ss_dssp TTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS-CCCEEEEE--TTE
T ss_pred CCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc-eEEEEEEc--CCE
Confidence 99999999985 77899999998776554443 555 89999999 779
Q ss_pred EEEEEcCCeEEEEECCCCee--------------EEEEeCCCCCCCcceEEEcCC--CCEEEEEeCCCcEEEEEcCCc
Q 001176 600 FLAAGDEFQIKFWDMDNMNM--------------LTTVDADGGLPASPRLRFNKE--GSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+++++.|+.|++||+.++.. +..+..+.. .|.+++|+|+ +++|++++.||.|++||+.++
T Consensus 244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC--DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC--CSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC--cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 99999999999999987644 666666644 7999999999 999999999999999999876
No 83
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=309.91 Aligned_cols=308 Identities=15% Similarity=0.181 Sum_probs=246.5
Q ss_pred cceEEeec-CCCCeeEEEEcc-CCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 334 KTVVRTLN-QGSNVMSMDFHP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 334 ~~~~~~l~-h~~~V~~~~~sp-dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
......+. |.+.|++++|+| +++ +|++|+.||.|+|||+.+++.......... .........+|...|.++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~ 105 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETV 105 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEE
T ss_pred CcceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEE
Confidence 34445555 999999999999 998 799999999999999998876543111000 000111134699999999
Q ss_pred EEcC-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC---CCcEEEEEEcCCCcEEEEECCCCeEE
Q 001176 412 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTCGDDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 412 ~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d---~~~~~l~s~~~dg~v~vwd~~~~~~~ 487 (1132)
+|+| ++.+|++++.||.|++||+.+++... .+ .+...+.++.|++. +. ++++++.|+.|++||+.+++.+
T Consensus 106 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp EECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCC
T ss_pred EEccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCccee
Confidence 9999 78899999999999999999876554 22 37788999999984 44 7999999999999999999999
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc-eEEe---------------cCCCCeEEEEEEcCCCC
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDY---------------DAPGNWCTMMAYSADGT 551 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~---------------~~~~~~v~~~~~s~~~~ 551 (1132)
..+.+|...|.+++|+|++. .++++++.||.|++||++.... ...+ ..+...|.+++|+|+++
T Consensus 180 ~~~~~~~~~v~~~~~~~~~~-~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 180 HILQGHRQEILAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp EEECCCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred eeecCCCCcEEEEEECCCCC-cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 99999999999999988652 3799999999999999987652 2222 46778999999999999
Q ss_pred EEEEEecCCCCCCeEEEEeCCCCceeeeeccccC----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC
Q 001176 552 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 627 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1132)
+|++++. ++.|++||+.+++....+..+.. ..+........+..+++++.++.|++||+.+++.+..+..|.
T Consensus 259 ~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 259 HLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp EEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred EEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 9999985 77899999999887655543221 122222233445667778889999999999999999998775
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 628 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 628 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
. .|.+++|+|++++|++++.||.|++|++.++
T Consensus 335 ~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 335 K--TVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp S--CEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred C--eEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 4 8999999999999999999999999999887
No 84
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.2e-32 Score=295.69 Aligned_cols=249 Identities=14% Similarity=0.212 Sum_probs=208.1
Q ss_pred eec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCc--cccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 339 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 339 ~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
.+. |.+.|++++|+|+|+ +||+|+.|++|+|||+.++. .+. .+.+|.++|.+++|+|
T Consensus 4 ~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~ 63 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAH 63 (297)
T ss_dssp ECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECC
T ss_pred eccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecC
Confidence 344 999999999999999 69999999999999997542 222 2678999999999987
Q ss_pred C--CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEEEEECCCCe--EEEE
Q 001176 416 D--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--KQYT 489 (1132)
Q Consensus 416 d--g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~vwd~~~~~--~~~~ 489 (1132)
+ |++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++|+.|+.|++||++++. ....
T Consensus 64 ~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~ 140 (297)
T 2pm7_B 64 PKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPII 140 (297)
T ss_dssp GGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEE
T ss_pred CCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeee
Confidence 4 899999999999999999986422 22356789999999999998 77 89999999999999998763 2467
Q ss_pred ecCCCCCeEEEEeeccC-----------CccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCeEEEEEEcCCC---C
Q 001176 490 FEGHEAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLG----SRVDYDAPGNWCTMMAYSADG---T 551 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~ 551 (1132)
+.+|...|.+++|+|.. ++.+|++|+.|++|++||++... ....+.+|...|.+++|+|++ +
T Consensus 141 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~ 220 (297)
T 2pm7_B 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (297)
T ss_dssp EECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCce
Confidence 78999999999999863 24799999999999999998766 345678899999999999995 7
Q ss_pred EEEEEecCCCCCCeEEEEeCCCCc---eeeee--ccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 001176 552 RLFSCGTSKEGESHLVEWNESEGA---IKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 615 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1132)
+|++++. |+.|++||++++. ....+ ..+.. .|.+++|+|++++|++++.|+.|++|+..
T Consensus 221 ~las~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 221 YMASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEEEC----CCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 8999875 7889999998643 11223 34444 79999999999999999999999999976
No 85
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-30 Score=289.66 Aligned_cols=287 Identities=15% Similarity=0.197 Sum_probs=247.5
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
.+....+.+|...|.+++| +++ .+|++++.||.|++||+.+......+..+...|.+++|+|+++++++++. +
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~--~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d 80 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDD--SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK----D 80 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EET--TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET----T
T ss_pred HHHHHHhhCCCCCcEEEEe-cCC--CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC----C
Confidence 3677899999999999999 644 78999999999999999988888888889999999999999999999985 7
Q ss_pred CeEEEEeCCCC---ceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC-
Q 001176 564 SHLVEWNESEG---AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK- 639 (1132)
Q Consensus 564 ~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~- 639 (1132)
+.+++|++... +.+..+.+|.. .+.+++| +++++++++.||.|++|| .++.+..+..+.. .+.+++|.|
T Consensus 81 g~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~--~v~~~~~~~~ 153 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTLIGHQG-NVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA--SVWDAKVVSF 153 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS--CEEEEEEEET
T ss_pred CeEEEEEeeecCCCCcccchhhccc-CEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC--ceeEEEEccC
Confidence 78999998754 56777777776 8999999 577999999999999999 6777777776644 799999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCccc
Q 001176 640 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 719 (1132)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1132)
++.++++++.||.|++||.... ...+..
T Consensus 154 ~~~~l~~~~~d~~i~i~d~~~~---~~~~~~------------------------------------------------- 181 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQNDKV---IKTFSG------------------------------------------------- 181 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTEE---EEEECS-------------------------------------------------
T ss_pred CCCEEEEEECCCCEEEEecCce---EEEEec-------------------------------------------------
Confidence 9999999999999999983211 100000
Q ss_pred CccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeec
Q 001176 720 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 799 (1132)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~ 799 (1132)
T Consensus 182 -------------------------------------------------------------------------------- 181 (313)
T 3odt_A 182 -------------------------------------------------------------------------------- 181 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCC
Q 001176 800 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 878 (1132)
Q Consensus 800 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~ 878 (1132)
.| ...+.+++|+|++. +++++ ||.|++||+.+++.+..+.+|.
T Consensus 182 ----------------------------------~~-~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 225 (313)
T 3odt_A 182 ----------------------------------IH-NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE 225 (313)
T ss_dssp ----------------------------------SC-SSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred ----------------------------------cC-cccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC
Confidence 03 66789999999998 66666 8999999999999999999999
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccc
Q 001176 879 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 955 (1132)
Q Consensus 879 ~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~ 955 (1132)
..|++++|+| ++ .|++++.||.|++||+.+++.+..+..|...|++++|+|+++ +++++.|+.|++|++.+++.
T Consensus 226 ~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 226 SFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp SCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred ceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 9999999999 77 588999999999999999999999999999999999999998 66799999999999998764
No 86
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-33 Score=316.55 Aligned_cols=222 Identities=7% Similarity=0.020 Sum_probs=179.2
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
-...|.+++|||||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~~ 76 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQQ 76 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCCS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCCC
Confidence 457899999999999999999999999 755543 346899999999999998 366666666432
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-----eEEEEEEcCCCCEEEEEec
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-----WCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~ 558 (1132)
..+..+ .|...|.+++|+|+ |.+|++++.||.|++||... ....+. |.. .+.+++|||||++|++++.
T Consensus 77 -~~~~~~-~~~~~V~~vawSPd--G~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 77 -NGLLNS-QPVCYPRVCKPSPI--DDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp -SCSSTT-SCSCCEEEEEECSS--SSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred -ceEeec-CCCCcEEEEEECCC--CCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 222233 46889999999885 48999999999999999544 444445 554 5999999999999999985
Q ss_pred CCCCCCeEEEEeCCCCce-------eeee----ccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee---EEEEe
Q 001176 559 SKEGESHLVEWNESEGAI-------KRTY----SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM---LTTVD 624 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~-------~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~ 624 (1132)
|++|++||+.++.. +.++ .+|.. .|.+++|+|+| +++++.|+.|++||+.++.. ..++.
T Consensus 150 ----DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~-~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 150 ----DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD-WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp ----TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC-CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred ----CCEEEEEECCCCccccccceeeeeeecccccccc-cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence 88999999998863 5666 55554 89999999999 88899999999999988774 34553
Q ss_pred -CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 625 -ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 625 -~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.| ...|.+++|+ |+.|++++ +++|++||+.++
T Consensus 223 ~~h--~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 223 NAS--RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp CCC--SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred ccc--cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence 44 3479999999 68899887 699999999877
No 87
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-31 Score=303.08 Aligned_cols=247 Identities=16% Similarity=0.140 Sum_probs=217.1
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+..|.++|.+++|+|++++||+|+.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 34589999999999999999999999999999999875 223336789999999999999999 899999999999999
Q ss_pred CCCCeEEEE--ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCeEEEEEEcCCCCEEE
Q 001176 481 VVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 481 ~~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
+.+++.... +..|...|.+++|+|++ .+|++++.|+.|++||++.... ......|...|.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCC--CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 999875544 46799999999998754 8999999999999999998774 223356788999999999999999
Q ss_pred EEecCCCCCCeEEEEeC------------------CCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 001176 555 SCGTSKEGESHLVEWNE------------------SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1132)
+++. ++.|++||+ ..++.+..+.+|.. .+.+++|+|++++|++++.|+.|++||+.+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9975 778999995 46788888888776 899999999999999999999999999999
Q ss_pred CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 617 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
++.+..+..+.. .|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 234 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 999999987644 79999999999988877 999999999987
No 88
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.5e-32 Score=308.20 Aligned_cols=292 Identities=12% Similarity=0.094 Sum_probs=214.8
Q ss_pred cceEEEEEecCCceEEeeccc-------ceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE
Q 001176 770 SKVVRLIYTNSGLSLLALASN-------AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 842 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~d-------g~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~ 842 (1132)
.+|.+++|+|||+.|++|+.+ +.|++|++............ ......+.+ | ...+.+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~-------------~~~~~~l~~--~-~~~v~s 78 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH-------------ILSEFALED--N-DDSPTA 78 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE-------------EEEEEECCT--T-SCCCCE
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeee-------------eeeEEEccC--C-CCceEE
Confidence 579999999999999998754 35999987643221100000 000011222 5 667776
Q ss_pred EEEeeCCCEEEEe-----------e-CCeEEEEECCCCeEE----EEe-----eCCCCCeEEEEEeCCCCCeEEEE--eC
Q 001176 843 IALSKNDSYVMSA-----------S-GGKVSLFNMMTFKVM----TMF-----MSPPPAATFLAFHPQDNNIIAIG--ME 899 (1132)
Q Consensus 843 ~~~s~dg~~la~~-----------s-dg~i~vwd~~~~~~~----~~~-----~~~~~~i~~l~~sp~~~~~lasg--~~ 899 (1132)
+++ ++..+++| + |+.+++|++.+.... ... ..+...+.+++||| ||+++|++ +.
T Consensus 79 ~~~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~ 155 (365)
T 4h5i_A 79 IDA--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKV 155 (365)
T ss_dssp EEE--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCS
T ss_pred EEe--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCC
Confidence 654 56666665 3 567999998654321 111 12445689999999 89887654 47
Q ss_pred CCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEE
Q 001176 900 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 979 (1132)
Q Consensus 900 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 979 (1132)
|++|+|||+.+++++..+. |.+.|++++|+|||++|++++.|+ +++|+..++.... .....+|. ..+.+++|
T Consensus 156 d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~---~~~~~~~~---~~v~~v~f 227 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIA---RKTDFDKN---WSLSKINF 227 (365)
T ss_dssp SCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEE---EECCCCTT---EEEEEEEE
T ss_pred CCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCccee---eeecCCCC---CCEEEEEE
Confidence 8999999999999988886 778899999999999999998655 6677776655322 12233333 56899999
Q ss_pred CCCCcEEEE-EeCC----eEEEEeCC-CCc-eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeccc
Q 001176 980 HNDQTHLLV-VHES----QISVYDSK-LEC-SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1052 (1132)
Q Consensus 980 s~dg~~l~~-~~d~----~v~vwd~~-~~~-~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~ 1052 (1132)
+|+|+++++ +.++ .+++|++. ... ........+|...|++++|||||++||+|+.||+|+|||+.+++++..+
T Consensus 228 spdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 228 IADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF 307 (365)
T ss_dssp EETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred cCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe
Confidence 999999998 4555 57888883 222 1112223456899999999999999999999999999999999988764
Q ss_pred CCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1053 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
. .+|...|++++|+| |+++|+||+.|++|+||++..
T Consensus 308 ~----------~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 308 K----------QAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp T----------TSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCT
T ss_pred c----------CcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCC
Confidence 2 48899999999999 899999999999999999954
No 89
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.7e-31 Score=312.75 Aligned_cols=300 Identities=11% Similarity=0.182 Sum_probs=233.3
Q ss_pred ecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCC------------cC
Q 001176 340 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA------------IS 407 (1132)
Q Consensus 340 l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~ 407 (1132)
+.+.+.|++++|+|+|+ +||+|+.||.|+|||+.+++........ .......+.+|. +.
T Consensus 25 ~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRG--------EYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCC--------CEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCccccc--------ceeEecccccccccccccccccccCc
Confidence 45678999999999998 7999999999999999987631100000 000011256787 88
Q ss_pred eEEEEEcCCC--CeEEEEeCCCeEEEEEecCCCcee------------------------------------ee-eeeec
Q 001176 408 VNRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELR------------------------------------QH-LEIDA 448 (1132)
Q Consensus 408 V~~v~~spdg--~~las~~~dg~i~iwd~~~~~~~~------------------------------------~~-~~l~~ 448 (1132)
|.+++|+|++ .+|++++.|++|++||+.++.... .. ....+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 799999999999999998643210 00 11367
Q ss_pred ccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC-CeEEE-------EecCCCCCeEEEEeeccCCccEEEEEecCCeE
Q 001176 449 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQY-------TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 520 (1132)
Q Consensus 449 h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~-~~~~~-------~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i 520 (1132)
|...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|+|++. .+|++++.||.|
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTI 251 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCE
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeE
Confidence 999999999999999 88998 799999999984 44444 2568999999999987532 799999999999
Q ss_pred EEEEcCCCCc----eEEecCCCC------------eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-Cceeeeeccc
Q 001176 521 KAWLYDYLGS----RVDYDAPGN------------WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGF 583 (1132)
Q Consensus 521 ~~wd~~~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~ 583 (1132)
++||+++... ...+..+.. .|.+++|+|+|++|++++ ++.|++||+++ ++++..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeecc
Confidence 9999998876 667777765 899999999999999886 27899999997 8888888887
Q ss_pred cCC-----------c---eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC-----------------------
Q 001176 584 RKR-----------S---LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD----------------------- 626 (1132)
Q Consensus 584 ~~~-----------~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------- 626 (1132)
... . +..++|+|++++|++++.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 530 0 223899999999999999999999999998876422110
Q ss_pred -------CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 627 -------GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 627 -------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
.....|..++|+|++++|++++.++ +.+|..
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1123678899999999999998875 777764
No 90
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.4e-32 Score=304.41 Aligned_cols=298 Identities=12% Similarity=0.149 Sum_probs=237.9
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec-cccCCceEEEEEeCC---CCEEEEEEcCCe
Q 001176 533 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGVVQFDTT---RNRFLAAGDEFQ 608 (1132)
Q Consensus 533 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~dg~ 608 (1132)
...+|...|.+++|+|++..+++++....+++.|++||+.+++...... +|.. .|.+++|+|+ +.++++++.||.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAK-PIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESS-CEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccC-cEEEEEEcCCCCCCceEEEecCCCe
Confidence 3456889999999999998777665321237899999999988765544 4444 8999999999 699999999999
Q ss_pred EEEEECCCCe-eEEEEeCCCCCCCcceEE------EcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCC
Q 001176 609 IKFWDMDNMN-MLTTVDADGGLPASPRLR------FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSE 681 (1132)
Q Consensus 609 i~iwd~~~~~-~~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1132)
|++||+.+++ .+..+..|.. .|.++. |+|++++|++++.||.|++||+.++......+..+...
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~------- 162 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKE--IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE------- 162 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSS--CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS-------
T ss_pred EEEEeCCCCCccEEEEEeccc--ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC-------
Confidence 9999999988 7888876644 789984 57899999999999999999998773233333222110
Q ss_pred CCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEE
Q 001176 682 PISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKAL 761 (1132)
Q Consensus 682 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~ 761 (1132)
T Consensus 163 -------------------------------------------------------------------------------- 162 (357)
T 3i2n_A 163 -------------------------------------------------------------------------------- 162 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcccccceEEEE----EecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCC
Q 001176 762 RLPDSIAASKVVRLI----YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 837 (1132)
Q Consensus 762 ~~~~~~~~~~i~~~~----~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~ 837 (1132)
....+.+++ |++++..+++++.||.|++||+.. +..... .. | .
T Consensus 163 ------~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------------------~~~~~~--~~--~-~ 209 (357)
T 3i2n_A 163 ------NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN----------------------MALRWE--TN--I-K 209 (357)
T ss_dssp ------CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT----------------------TEEEEE--EE--C-S
T ss_pred ------CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc----------------------Cceeee--cC--C-C
Confidence 123466666 789999999999999999998743 222111 11 5 7
Q ss_pred CCeeEEEEee---CCCEEEEee-CCeEEEEECCCCeEEEEee-----CCCCCeEEEEEeCCCCC-eEEEEeCCCcEEEEE
Q 001176 838 ESAACIALSK---NDSYVMSAS-GGKVSLFNMMTFKVMTMFM-----SPPPAATFLAFHPQDNN-IIAIGMEDSSVQIYN 907 (1132)
Q Consensus 838 ~~v~~~~~s~---dg~~la~~s-dg~i~vwd~~~~~~~~~~~-----~~~~~i~~l~~sp~~~~-~lasg~~dg~v~iwd 907 (1132)
..|.+++|+| ++.++++++ ||.|++||+.+++....+. +|...|++++|+| +++ +|++|+.||.|++||
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEE
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEee
Confidence 8899999999 999999998 9999999998877655554 8999999999999 777 899999999999999
Q ss_pred cccc-------------------eeeeeeccccCCeeEEEEcCCCCEEE-EEcCCCcEEEEECCCcc
Q 001176 908 VRVD-------------------EVKTKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWE 954 (1132)
Q Consensus 908 ~~~~-------------------~~~~~l~~h~~~V~~l~~spdg~~l~-s~~~D~~i~iwd~~~~~ 954 (1132)
+.++ +.+..+.+|...|++++|+|++++|+ +++.|+.|++||+.+.+
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 9854 45677889999999999999999998 89999999999998754
No 91
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.9e-30 Score=288.41 Aligned_cols=281 Identities=15% Similarity=0.263 Sum_probs=236.3
Q ss_pred eeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC
Q 001176 346 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 425 (1132)
Q Consensus 346 V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~ 425 (1132)
.++|+||+++ +||+|. |++|+|||+.+++.+.. + .+.+|...|.+++|+|+|++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~--~---------------~~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQL--L---------------QMEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEE--E---------------ECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEE--E---------------EecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999986 678775 99999999999987642 1 14578899999999999999999999
Q ss_pred CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEecCCCCCeEEEEeec
Q 001176 426 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPHH 504 (1132)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~i~~~~ 504 (1132)
||+|++||+++++.+. .+.+|...+.++.+ ++. .+++++.++.+++|+...+ ..+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999987665 57789988876655 456 7999999999999998875 45678889999999999977
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCeEEEEEEcCCCCEEE-EEecCCCCCCeEEEEeCCCCceeee
Q 001176 505 KESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 505 ~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
.+ .++++++.|+.|++||+++++. ......+.+.|.+++++|++..++ .++. ..++.|++||.........
T Consensus 161 ~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 161 DG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp TS--SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEEC--TTTCEEEEEETTTCCEEEE
T ss_pred CC--CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEec--CCCCEEEEEeccccccccc
Confidence 54 8999999999999999987653 335566778999999999876554 3332 3478899999998887766
Q ss_pred eccccCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 580 YSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
..... .+..+.|+|+++.+++++ .|+.|++||+.+++++..+.+|.. .|++++|+|+|++|++|+.||+|++||
T Consensus 237 ~~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 237 VDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred cccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 55433 688999999999988765 799999999999999999987754 899999999999999999999999999
Q ss_pred cCCc
Q 001176 658 NSDG 661 (1132)
Q Consensus 658 ~~~~ 661 (1132)
+.+.
T Consensus 313 ~~~~ 316 (318)
T 4ggc_A 313 CFEL 316 (318)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8654
No 92
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-32 Score=312.33 Aligned_cols=243 Identities=12% Similarity=0.081 Sum_probs=200.3
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
.+.++|.+++|+|||++||+|+.|+.|++||+.++. ......+.+|...|.+++|+|+++ +|++++.|+.|++||+.
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC---
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEEcC
Confidence 367799999999999999999999999999999862 122336789999999999999998 89999999999999999
Q ss_pred CCe---EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc---eEEecC-CCCeEEEEEEcCCCCEEEE
Q 001176 483 AGR---KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDA-PGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 483 ~~~---~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~-~~~~v~~~~~s~~~~~l~~ 555 (1132)
+++ ....+.+|...|.+++|+|+ +.+|++++.|+.|++||++.... ...+.. |...|.+++|+|++++|++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPN--EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTT--SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCC--CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 887 67788899999999999885 48999999999999999998763 556666 8999999999999999999
Q ss_pred EecCCCCCCeEEEEeCC------------------CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 001176 556 CGTSKEGESHLVEWNES------------------EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1132)
++. ++.|++||+. .++++..+ +|.. .|.+++|+|++++|++++.||.|++||+.++
T Consensus 164 ~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 164 GCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred EeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 985 7789999985 35566666 6665 8999999999999999999999999999998
Q ss_pred ee----EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 618 NM----LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 618 ~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
+. +..+..|.. .|.+++|+|++++|++++.++.+ +|+..
T Consensus 238 ~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 238 EQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp TSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 87 666666644 79999999999999988776665 66654
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.7e-32 Score=298.26 Aligned_cols=251 Identities=18% Similarity=0.288 Sum_probs=207.4
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 477 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~ 477 (1132)
.+.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|++++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999886432 23468899999999999863 67 799999999999
Q ss_pred EEECCCC--eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCeEEEEEEcCC---
Q 001176 478 VWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD--- 549 (1132)
Q Consensus 478 vwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 549 (1132)
+||++++ +.+..+.+|...|.+++|+|+.++.+|++++.|++|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 9999987 4667888999999999999986678999999999999999987643 2345667788999999997
Q ss_pred --------------CCEEEEEecCCCCCCeEEEEeCCCC---ceeeeeccccCCceEEEEEeCCC----CEEEEEEcCCe
Q 001176 550 --------------GTRLFSCGTSKEGESHLVEWNESEG---AIKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQ 608 (1132)
Q Consensus 550 --------------~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~ 608 (1132)
+++|++++. |+.|++||++.+ +.+..+.+|.. .|.+++|+|++ .+|++++.|+.
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 468888874 788999999755 46677888877 89999999986 78999999999
Q ss_pred EEEEECCCC---e-eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 609 IKFWDMDNM---N-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 609 i~iwd~~~~---~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|+.|++|+...
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999998762 1 12223333 34799999999999999999999999999753
No 94
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=8.5e-31 Score=304.83 Aligned_cols=272 Identities=21% Similarity=0.320 Sum_probs=238.5
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
|...|+|++| +++ ++++|+.||.|++||+.+++.... +.+|.+.|.+++| ++++|+
T Consensus 132 ~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l~ 187 (435)
T 1p22_A 132 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 187 (435)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEEE
Confidence 6678999888 677 699999999999999998876543 6789999999999 889999
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE---EEecCCCCCeE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVY 498 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~---~~~~~h~~~v~ 498 (1132)
+|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.||.|++||+.+++.. ..+.+|...|.
T Consensus 188 sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 188 TGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260 (435)
T ss_dssp EEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred EEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence 99999999999999987655 6778999999999974 4 7999999999999999988765 67889999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee
Q 001176 499 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 499 ~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
++++ ++.++++++.||.|++||+++......+..|...|.++++ +++++++++. ++.|++||+++++.+.
T Consensus 261 ~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~~ 330 (435)
T 1p22_A 261 VVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 330 (435)
T ss_dssp EEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEEE
Confidence 9998 3379999999999999999999999999999999999998 4689999875 7889999999999999
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe---------eEEEEeCCCCCCCcceEEEcCCCCEEEEEeC
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN---------MLTTVDADGGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
.+.+|.. .|.+++| ++.++++|+.||.|++||+.++. .+..+..|.. .|.+++| ++.+|++++.
T Consensus 331 ~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s~s~ 403 (435)
T 1p22_A 331 VLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVSSSH 403 (435)
T ss_dssp EECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEECCS
T ss_pred EEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEEEEEeC
Confidence 9999887 8999988 68899999999999999997765 7777776644 8999999 7889999999
Q ss_pred CCcEEEEEcCCc
Q 001176 650 DNGIKILANSDG 661 (1132)
Q Consensus 650 dg~i~iw~~~~~ 661 (1132)
||.|++||+.++
T Consensus 404 Dg~i~iwd~~~~ 415 (435)
T 1p22_A 404 DDTILIWDFLND 415 (435)
T ss_dssp SSEEEEEC----
T ss_pred CCEEEEEECCCC
Confidence 999999999876
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.5e-31 Score=296.80 Aligned_cols=279 Identities=9% Similarity=0.098 Sum_probs=238.5
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCC-eE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-ML 420 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l 420 (1132)
|.+.|++++|+|+++ +|++|+.||.|+||++.+++.... ...+.+|...|.+++|+|+++ +|
T Consensus 10 h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~l 72 (342)
T 1yfq_A 10 PKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp CSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEEE
T ss_pred CCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCCCCcEE
Confidence 889999999999998 689999999999999988762110 001346999999999999999 99
Q ss_pred EEEeCCCeEEEEEe-cCCCceeeeeeeec--ccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC---------CeEEE
Q 001176 421 GVAFSKHIVHLYTY-NPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---------GRKQY 488 (1132)
Q Consensus 421 as~~~dg~i~iwd~-~~~~~~~~~~~l~~--h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~---------~~~~~ 488 (1132)
++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++||+.+ ++++.
T Consensus 73 ~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp EEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred EEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 99999999999999 87653 25778 999999999999 77 899999999999999987 77777
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC-CCc--eEEecCCCCeEEEEEEcC-CCCEEEEEecCCCCCC
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGS--RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGES 564 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~ 564 (1132)
.+. |...|.+++|+++ .+++++.|+.|++||++. ... ......+...+.+++|+| +++++++++. ++
T Consensus 146 ~~~-~~~~v~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----dg 216 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSS----RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----DG 216 (342)
T ss_dssp SSS-SCCCEEEEEECSS----EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----TS
T ss_pred EEe-eCCceEEEEecCC----cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----CC
Confidence 776 8999999999763 399999999999999998 443 335556778999999999 9999999975 78
Q ss_pred eEEEEeCCCC------ceeeeeccccC--------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC-CCC
Q 001176 565 HLVEWNESEG------AIKRTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGL 629 (1132)
Q Consensus 565 ~i~~wd~~~~------~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~ 629 (1132)
.|++|+++.. +....+..|.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~- 295 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED- 295 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS-
T ss_pred cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC-
Confidence 8999999887 77778877642 37999999999999999999999999999999999888765 44
Q ss_pred CCcceEEEcCCCCEEEEEeCCCc-EEEEE
Q 001176 630 PASPRLRFNKEGSLLAVTTSDNG-IKILA 657 (1132)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg~-i~iw~ 657 (1132)
.|.+++ |++++|++++.||. .+.+.
T Consensus 296 -~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 296 -SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp -EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred -CceEec--CCCCeEEEEecCCccccccc
Confidence 788988 99999999999998 54444
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.4e-31 Score=302.55 Aligned_cols=297 Identities=13% Similarity=0.177 Sum_probs=242.3
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC-CCCeEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGV 422 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~las 422 (1132)
.....++++|+...++++|+.||.|+||++........ ....+.+|.+.|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 35567899999876677789999999999966433211 1112678999999999999 9999999
Q ss_pred EeCCCeEEEEEecCCCce----eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe--cCCCCC
Q 001176 423 AFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHEAP 496 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~----~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~--~~h~~~ 496 (1132)
|+.||+|++||+.++... .....+.+|...|.+++|+|++.. +|++|+.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987421 223367899999999999999843 8999999999999999999999999 889999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCe-EEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
|.+++|+|+ +.+|++++.||.|++||++++.....+ ..|.+. +.+++|+|++++|+++.. +..++.|++||++++
T Consensus 179 v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSVDWSRD--GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEEECTT--SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred eEEEEECCC--CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence 999999884 489999999999999999998888777 667664 899999999999888731 124889999999987
Q ss_pred ce-eeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCee-EEEEeCCCCCCCcceEEEcCCCCEEEEEeCCC
Q 001176 575 AI-KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM-LTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 651 (1132)
Q Consensus 575 ~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1132)
+. +..........+.+++|+|+++++++++ .||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++
T Consensus 256 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~ 333 (402)
T 2aq5_A 256 EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCE 333 (402)
T ss_dssp SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTE
T ss_pred cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cce
Confidence 64 3333322333799999999999997654 799999999998874 555554444568999999999988764 567
Q ss_pred cEEEEEcCCc
Q 001176 652 GIKILANSDG 661 (1132)
Q Consensus 652 ~i~iw~~~~~ 661 (1132)
.+++|++.++
T Consensus 334 ~~~~~~l~~~ 343 (402)
T 2aq5_A 334 IARFYKLHER 343 (402)
T ss_dssp EEEEEEEETT
T ss_pred eEEEEEcCCC
Confidence 9999999876
No 97
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.1e-30 Score=296.90 Aligned_cols=296 Identities=16% Similarity=0.222 Sum_probs=244.0
Q ss_pred cCCcccceEEeec-CCCCeeEEEEccC---CCeEEEEEcCCCcEEEEecCC-CccccccceeeeecccccccccccccCC
Q 001176 329 QDDLTKTVVRTLN-QGSNVMSMDFHPQ---QQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 329 ~d~~~~~~~~~l~-h~~~V~~~~~spd---g~~lla~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
.+..+...+..+. |.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~ 84 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQM 84 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------Eecc
Confidence 3446677788887 9999999999999 46 799999999999999987 433211 2567
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEE--ecCCCcEEEEEEcCCCcEEEEEC
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF--AHPNKQLCIVTCGDDKMIKVWDV 481 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~--s~d~~~~~l~s~~~dg~v~vwd~ 481 (1132)
|.+.|.+++|+|++++|++|+.||.|++||+.+++... +.+|...|.+++| +|++. +|++++.|+.|++||+
T Consensus 85 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDT 158 (368)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECS
T ss_pred ccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEEC
Confidence 99999999999999999999999999999999876443 5679999999999 88887 8999999999999999
Q ss_pred CCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCeEEEEEEcCCCCE----EEE
Q 001176 482 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTR----LFS 555 (1132)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~----l~~ 555 (1132)
++++.+..+..+. .+.++.+.+ ..+++++.++.+++|+++......... .....+.++++.++... +++
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 159 RSSNPMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp SCSSCSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred CCCcEEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence 9999999888665 566666643 578999999999999998766544332 23445666666665544 888
Q ss_pred EecCCCCCCeEEEEeCCCC---ceeeeeccccCC-----------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 001176 556 CGTSKEGESHLVEWNESEG---AIKRTYSGFRKR-----------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 621 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1132)
++. ++.|++||++.. ..+..+.+|... .|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus 234 ~~~----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 309 (368)
T 3mmy_A 234 GSI----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK 309 (368)
T ss_dssp EET----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred ecC----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE
Confidence 764 888999999987 566777776642 59999999999999999999999999999999999
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 622 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
.+..|.. .|.+++|+|+|++|++++.|+..+.|++.+
T Consensus 310 ~~~~~~~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 310 TSEQLDQ--PISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp ECCCCSS--CEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EecCCCC--CceEEEECCCCCeEEEEecccccccccccC
Confidence 8887644 899999999999999999988666555433
No 98
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.8e-30 Score=296.79 Aligned_cols=294 Identities=18% Similarity=0.276 Sum_probs=237.9
Q ss_pred eEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCC
Q 001176 759 KALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 838 (1132)
Q Consensus 759 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~ 838 (1132)
+.+..|.......+..++|++++ +++.+.|++|++||.. +|.+... +....| ..
T Consensus 95 ~~l~ap~~~~d~y~~~l~wS~~n--~lAvgld~tV~lWd~~----------------------tg~~~~~-~~~~~~-~~ 148 (420)
T 4gga_A 95 RILDAPEIRNDYYLNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQP-GE 148 (420)
T ss_dssp EEEECTTCCCCTTCBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCST-TC
T ss_pred eEEECCCCcccccceeEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCC-CC
Confidence 33444443345567789999765 4445569999999753 4443322 222236 78
Q ss_pred CeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc-eeeee
Q 001176 839 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTK 916 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~ 916 (1132)
.|++++|+|||++||+|+ ||+|++||+.+++++..+.+|...+.++++++ .+|++|+.|+.+++||.... ..+..
T Consensus 149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~ 225 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVAT 225 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEE
Confidence 899999999999999999 99999999999999999999999999988854 69999999999999998864 55677
Q ss_pred eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEE-EE---eCC
Q 001176 917 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL-VV---HES 992 (1132)
Q Consensus 917 l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-~~---~d~ 992 (1132)
+.+|...+..+.|+|+++++++++.|+.+++|+..+++.... .+.....+. ..|.+++|+|++..++ ++ .|+
T Consensus 226 ~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~ 301 (420)
T 4gga_A 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-PLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDR 301 (420)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-CSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTC
T ss_pred ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce-eeeeecccC---CceeeeeeCCCcccEEEEEeecCCC
Confidence 899999999999999999999999999999999988764322 222233333 6789999999776444 43 489
Q ss_pred eEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEeCCCcceecccCCCccccccccCCCCCC
Q 001176 993 QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF--CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH 1069 (1132)
Q Consensus 993 ~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1132)
.|++||+ ++.+...+.. ...+.++.|+|+++.|++++ .||.|+|||+.+++.+..+. +|...
T Consensus 302 ~I~iwd~~t~~~~~~~~~----~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-----------gH~~~ 366 (420)
T 4gga_A 302 HIRIWNVCSGACLSAVDA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-----------GHTSR 366 (420)
T ss_dssp EEEEEETTTTEEEEEEEC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-----------CCSSC
T ss_pred EEEEEeCCccccceeecc----ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-----------CCCCC
Confidence 9999999 6666655532 56899999999999988765 79999999999999987775 88999
Q ss_pred cEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1070 PLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1070 v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
|++++|+| ++.+|+||+.|++|++||+.+..
T Consensus 367 V~~l~~sp-dg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 367 VLSLTMSP-DGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEEECT-TSSCEEEEETTTEEEEECCSCSS
T ss_pred EEEEEEcC-CCCEEEEEecCCeEEEEECCCCC
Confidence 99999999 88999999999999999997654
No 99
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=3.7e-31 Score=292.80 Aligned_cols=251 Identities=11% Similarity=0.092 Sum_probs=203.1
Q ss_pred CCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCe--EEEEeeCCCCCeEEEEEeCC-CCCeEEEEeCCCcEEEEEccc
Q 001176 835 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK--VMTMFMSPPPAATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRV 910 (1132)
Q Consensus 835 h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~sp~-~~~~lasg~~dg~v~iwd~~~ 910 (1132)
| ...|++++|+|+|++||+|+ |++|++||+.+++ ++..+.+|.+.|.+++|+|. ++++|++|+.|++|++||+.+
T Consensus 12 H-~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 12 H-EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred c-cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 7 89999999999999999999 9999999998764 56789999999999999862 478999999999999999988
Q ss_pred c--eeeeeeccccCCeeEEEEcCC--CCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC----
Q 001176 911 D--EVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND---- 982 (1132)
Q Consensus 911 ~--~~~~~l~~h~~~V~~l~~spd--g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---- 982 (1132)
+ +....+.+|...|++++|+|+ +.+|++++.|++|++||+..+... .......+|. ..+.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~--~~~~~~~~h~---~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW--EVKKINNAHT---IGCNAVSWAPAVVPG 165 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE--EECCBTTSSS---SCBCCCEECCCCCC-
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc--ceeeeecccc---CCcceEEEccccCCc
Confidence 7 356678899999999999998 789999999999999999875321 1223344554 57889999998
Q ss_pred -------------CcEEEE-EeCCeEEEEeCC-CCceeecCCCCCCCCCeEEEEEccCC----CEEEEEecCCcEEEEeC
Q 001176 983 -------------QTHLLV-VHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDG----LLVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 983 -------------g~~l~~-~~d~~v~vwd~~-~~~~~~~~~~~~h~~~i~~i~~s~dg----~~las~~~dg~i~vwd~ 1043 (1132)
+++|++ +.|+.|++||+. ...........+|...|.+++|+|++ .+||+|+.||+|++|++
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence 467777 579999999994 32222222345679999999999987 89999999999999999
Q ss_pred CCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1044 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
.+...... .......|...+.+++|+| ++++|++++.|++|++|+...
T Consensus 246 ~~~~~~~~-------~~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 246 DDASSNTW-------SPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSTTCCCC-------BCCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEECT
T ss_pred cCccccch-------hhhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEECC
Confidence 87321000 0011236778999999999 889999999999999999864
No 100
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=4.9e-30 Score=294.84 Aligned_cols=241 Identities=17% Similarity=0.213 Sum_probs=207.1
Q ss_pred CCCcC--eEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 403 DAAIS--VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 403 ~h~~~--V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
+|... +.+++|++ ..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++||
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYD 162 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEE
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEE
Confidence 45444 44566654 56888889999999999998765432 123889999999999999 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
+.+++.+..+.+|...|.+++|++ .++++++.||.|++||++. ......+..|...|.+++|+|++++|++++.
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~- 237 (401)
T 4aez_A 163 VESQTKLRTMAGHQARVGCLSWNR----HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN- 237 (401)
T ss_dssp TTTCCEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred CcCCeEEEEecCCCCceEEEEECC----CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC-
Confidence 999999999999999999999943 7999999999999999994 4556678889999999999999999999985
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEE-EEEE--cCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
++.|++||+++++.+..+..|.. .|.+++|+|++..+ ++++ .|+.|++||+.+++.+..+..+ ..|.+++
T Consensus 238 ---d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~ 310 (401)
T 4aez_A 238 ---DNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSLI 310 (401)
T ss_dssp ---TSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEEE
T ss_pred ---CCeEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEE
Confidence 77899999999999999988877 89999999987554 4444 6999999999999999888643 3699999
Q ss_pred EcCCCCEEEEEe--CCCcEEEEEcCCc
Q 001176 637 FNKEGSLLAVTT--SDNGIKILANSDG 661 (1132)
Q Consensus 637 ~s~~~~~l~~~~--~dg~i~iw~~~~~ 661 (1132)
|+|+++.+++++ .||.|++|++.++
T Consensus 311 ~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 311 WSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp ECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred ECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 999999999954 8999999998775
No 101
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=1.7e-29 Score=280.58 Aligned_cols=283 Identities=18% Similarity=0.262 Sum_probs=229.1
Q ss_pred ceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCC
Q 001176 771 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 850 (1132)
Q Consensus 771 ~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~ 850 (1132)
....++||+++ +++.+.|++|++||+. ++++... +....| ...|++++|+|+++
T Consensus 27 y~~~l~WS~~~--~lAvg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~-~~~V~~v~~~~~~~ 80 (318)
T 4ggc_A 27 YLNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQP-GEYISSVAWIKEGN 80 (318)
T ss_dssp TCBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCST-TCCEEEEEECTTSS
T ss_pred cceEEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCC-CCeEEEEEECCCCC
Confidence 45779999987 4455679999999753 4443332 222336 88899999999999
Q ss_pred EEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc-eeeeeeccccCCeeEEE
Q 001176 851 YVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLA 928 (1132)
Q Consensus 851 ~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~ 928 (1132)
+|++|+ ||+|++||+.+++++..+.+|...+.++.+. +.++++|+.++.+++|+..++ ..+..+.+|...+..+.
T Consensus 81 ~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (318)
T 4ggc_A 81 YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 157 (318)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred EEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEE
Confidence 999999 9999999999999999999999998877765 469999999999999998875 45677889999999999
Q ss_pred EcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE-E---eCCeEEEEeCCCCce
Q 001176 929 FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V---HESQISVYDSKLECS 1004 (1132)
Q Consensus 929 ~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~---~d~~v~vwd~~~~~~ 1004 (1132)
+++++++|++++.|++|++||+.+++...... .....+. ..+..++++|++..++. + .++.|++||......
T Consensus 158 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~ 233 (318)
T 4ggc_A 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL-QTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 233 (318)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCBTTBSCCS-EEECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE
T ss_pred EcCCCCEEEEEecCcceeEEECCCCcccccce-eeecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc
Confidence 99999999999999999999999876433222 1222222 56889999998765543 2 468999999944333
Q ss_pred eecCCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCe
Q 001176 1005 RSWSPKDALPAPISSAIYSCDGLLVYAGF--CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQ 1082 (1132)
Q Consensus 1005 ~~~~~~~~h~~~i~~i~~s~dg~~las~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 1082 (1132)
.... .+...+..+.|+|++..+++++ .||.|++||+.+++.+..+. +|...|.+++|+| ++.+
T Consensus 234 ~~~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-----------gH~~~V~~l~~sp-dg~~ 298 (318)
T 4ggc_A 234 LSAV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-----------GHTSRVLSLTMSP-DGAT 298 (318)
T ss_dssp EEEE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-----------CCSSCEEEEEECT-TSSC
T ss_pred cccc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-----------CCCCCEEEEEEcC-CCCE
Confidence 3322 2367899999999999887765 79999999999999987775 8889999999999 8899
Q ss_pred EEEEeCCCcEEEEecCCCc
Q 001176 1083 IALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1083 l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
|+||+.||+|++||+.+.+
T Consensus 299 l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 299 VASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEETTTEEEEECCSCCC
T ss_pred EEEEecCCeEEEEECCCCC
Confidence 9999999999999997654
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=9.4e-30 Score=297.91 Aligned_cols=250 Identities=13% Similarity=0.213 Sum_probs=207.7
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCc--------eeeeeeeeccc------------CCEEEEEEecCC
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE--------LRQHLEIDAHV------------GGVNDIAFAHPN 462 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~--------~~~~~~l~~h~------------~~v~~v~~s~d~ 462 (1132)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. +.|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3778999999999999999999999999999997652 22344678998 889999999998
Q ss_pred --CcEEEEEEcCCCcEEEEECCCCeEE---------------------------------------EE-ecCCCCCeEEE
Q 001176 463 --KQLCIVTCGDDKMIKVWDVVAGRKQ---------------------------------------YT-FEGHEAPVYSV 500 (1132)
Q Consensus 463 --~~~~l~s~~~dg~v~vwd~~~~~~~---------------------------------------~~-~~~h~~~v~~i 500 (1132)
. .|++++.|++|++||+.++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 7999999999999998775432 12 36799999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEE--------ecCCCCeEEEEEEcCCC-CEEEEEecCCCCCCeEEEEeC
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--------YDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--------~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
+|+|+ +.+|+++ .|+.|++||++....... +..|...|.+++|+|++ ++|++++. ++.|++||+
T Consensus 184 ~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINSD--YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECTT--SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcCC--CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 99885 4899998 799999999985443332 45788899999999999 89999985 788999999
Q ss_pred CCCce----eeeeccccC-----------CceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CeeEEEEeCCCCCCC----
Q 001176 572 SEGAI----KRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPA---- 631 (1132)
Q Consensus 572 ~~~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 631 (1132)
++++. +..+.++.. ..|.+++|+|++++|++++. +.|++||+.+ ++++..+..|.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99886 677877764 27999999999999999998 9999999997 888888877643111
Q ss_pred ---------cceEEEcCCCCEEEEEeCCCcEEEEEcCCcc
Q 001176 632 ---------SPRLRFNKEGSLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 632 ---------v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
+..++|+|++++|++|+.||.|++||+.++.
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 3349999999999999999999999999883
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=8e-30 Score=287.37 Aligned_cols=253 Identities=12% Similarity=0.167 Sum_probs=217.4
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCce-eeeeeeecccCCEEEEEEec--CCCcEEEEEEcCCCcE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMI 476 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~--d~~~~~l~s~~~dg~v 476 (1132)
++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| |+. +|++|+.||.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 46789999999999999999999999999999999976432 34446789999999999999 577 89999999999
Q ss_pred EEEECCCC---------eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec------------
Q 001176 477 KVWDVVAG---------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD------------ 535 (1132)
Q Consensus 477 ~vwd~~~~---------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~------------ 535 (1132)
++||+.++ +.+..+.+|...|.+++|+|..++.++++++.||.|++||+++......+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 668889999999999999987335899999999999999998876543222
Q ss_pred -CCCCeEEEEEEcCC---CCEEEEEecCCCCCCeEEEEeCCCCce--eeeeccccCCceEEEEEeCCC----CEEEEEEc
Q 001176 536 -APGNWCTMMAYSAD---GTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTR----NRFLAAGD 605 (1132)
Q Consensus 536 -~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~ 605 (1132)
.+...+.+++|+|+ +.++++++. ++.+.+|+...++. +..+.+|.. .|.+++|+|++ ++|++++.
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEET
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcC
Confidence 46678999999997 889999875 67788888777765 667777776 89999999998 79999999
Q ss_pred CCeEEEEECCCC----------------------------------------------eeEEEEeCCCCCCCcceEEEcC
Q 001176 606 EFQIKFWDMDNM----------------------------------------------NMLTTVDADGGLPASPRLRFNK 639 (1132)
Q Consensus 606 dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~~~~s~ 639 (1132)
||.|++||+.++ +.+..+..|. ..|.+++|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~ 316 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN--GEVWSVSWNL 316 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS--SCEEEEEECS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc--ccEEEEEEcC
Confidence 999999999865 4555555554 4899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCc
Q 001176 640 EGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
++++|++++.||.|++|++.++
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTT
T ss_pred CCCEEEEecCCCcEEEEecCcC
Confidence 9999999999999999999987
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=3.5e-29 Score=291.19 Aligned_cols=234 Identities=17% Similarity=0.305 Sum_probs=210.3
Q ss_pred CCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001176 402 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 481 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~ 481 (1132)
.+|...|.+++| ++++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ +|++|+.||+|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 357778998887 89999999999999999999987655 67899999999999 677 8999999999999999
Q ss_pred CCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 482 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
.+++.+..+.+|...|.+++|++ ..+++++.||.|++||+.+.... ..+..|...|.+++| +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 99999999999999999999853 69999999999999999987765 567788899999999 7889999975
Q ss_pred CCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001176 559 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 638 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1132)
++.|++||+++++.+..+.+|.. .+.++.++ ++++++|+.||.|++||+.+++.+..+..|.. .|.+++|
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~- 344 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF- 344 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC-
T ss_pred ----CCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe-
Confidence 78899999999999999998887 88888885 68999999999999999999999999987654 7899998
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCc
Q 001176 639 KEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 639 ~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
++.+|++|+.||.|++||+.++
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHH
T ss_pred -cCCEEEEEeCCCcEEEEECCCC
Confidence 7889999999999999998765
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=3.6e-29 Score=281.24 Aligned_cols=254 Identities=10% Similarity=0.001 Sum_probs=213.0
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
..+|.+.|.+++|+|++++|++++.|+.|++|++.++........+.+|...|.+++|+|+++. +|++|+.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999988733333356689999999999999872 388999999999999
Q ss_pred C-CCCeEEEEecC--CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC---------CCceEEecCCCCeEEEEEEcC
Q 001176 481 V-VAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---------LGSRVDYDAPGNWCTMMAYSA 548 (1132)
Q Consensus 481 ~-~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~s~ 548 (1132)
+ .+++. ..+.+ |...|.+++|++ + .++++++.|+.|++||+++ ......+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG-D--DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET-T--TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC-C--CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77765 78888 999999999998 3 8999999999999999987 55555555 778999999999
Q ss_pred CCCEEEEEecCCCCCCeEEEEeCCC-Cce--eeeeccccCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCC------e
Q 001176 549 DGTRLFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNM------N 618 (1132)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~ 618 (1132)
++ +++++. ++.|++||+++ +.. ......+.. .+.+++|+| +++++++++.||.|++|++... +
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCCC-ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 88 777764 78899999998 553 223333444 899999999 9999999999999999999887 7
Q ss_pred eEEEEeCCCC-------CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 619 MLTTVDADGG-------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 619 ~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
....+..+.. ...|.+++|+|++++|++++.||.|++||+.++ +....+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~ 289 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-KKIKNF 289 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEEC
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH-hHhhhh
Confidence 7777776643 347999999999999999999999999999887 444333
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-29 Score=288.95 Aligned_cols=257 Identities=15% Similarity=0.210 Sum_probs=213.3
Q ss_pred ceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCC--ccccccceeeeecccccccccccccCCCCcCeEEE
Q 001176 335 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411 (1132)
Q Consensus 335 ~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 411 (1132)
.++.++. |.+.|++++|+|+|+ +|++|+.||.|+|||+..+ +.+. .+.+|.+.|.++
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~ 61 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRV 61 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEE
T ss_pred CccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEE
Confidence 3455666 999999999999998 6999999999999999743 2222 266899999999
Q ss_pred EEcCC--CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEEEEECCCCe--
Q 001176 412 VWGPD--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR-- 485 (1132)
Q Consensus 412 ~~spd--g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~vwd~~~~~-- 485 (1132)
+|+|+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++.
T Consensus 62 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 62 DWAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp EECCGGGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCC
T ss_pred EeCCCCCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCce
Confidence 99987 99999999999999999998752 223357789999999999999 88 89999999999999998873
Q ss_pred EEEEecCCCCCeEEEEeeccC-----------CccEEEEEecCCeEEEEEcCCCCce----EEecCCCCeEEEEEEcCC-
Q 001176 486 KQYTFEGHEAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSAD- 549 (1132)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~- 549 (1132)
....+.+|...|.+++|+|.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+
T Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 218 (379)
T 3jrp_A 139 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 218 (379)
T ss_dssp CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC
Confidence 445677899999999999842 4589999999999999999876643 466778899999999999
Q ss_pred --CCEEEEEecCCCCCCeEEEEeCCCCc---eeee--eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee
Q 001176 550 --GTRLFSCGTSKEGESHLVEWNESEGA---IKRT--YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619 (1132)
Q Consensus 550 --~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1132)
+++|++++. ++.|++||+.++. .... ...+.. .+.+++|+|++++|++++.||.|++|++.....
T Consensus 219 ~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 219 LLRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp SSSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred CCCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 899999875 7889999999864 1122 222444 799999999999999999999999999885443
No 107
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-29 Score=287.97 Aligned_cols=253 Identities=19% Similarity=0.268 Sum_probs=218.1
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~v 478 (1132)
+.+|.+.|.+++|+|++++||+|+.||.|++||+..+. ......+.+|...|++++|+++ +. +|++|+.||.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 67899999999999999999999999999999998532 2233467899999999999987 77 8999999999999
Q ss_pred EECCCCe--EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCeEEEEEEcC------
Q 001176 479 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSA------ 548 (1132)
Q Consensus 479 wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~------ 548 (1132)
||+.+++ .+..+.+|...|.+++|+|..++.++++++.|+.|++||++... ....+..+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999997 77888899999999999987435899999999999999998874 3446678888999999999
Q ss_pred -------CCCEEEEEecCCCCCCeEEEEeCCCCc----eeeeeccccCCceEEEEEeCC---CCEEEEEEcCCeEEEEEC
Q 001176 549 -------DGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 549 -------~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~ 614 (1132)
+++++++++. ++.|++||++++. ....+.+|.. .|.+++|+|+ +.+|++++.||.|++||+
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 6999999975 7789999998764 4456777776 8999999999 899999999999999999
Q ss_pred CCCe---eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 615 DNMN---MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 615 ~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.++. ....+....+...|.+++|+|++++|++++.||.|++|++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 8864 3333333334558999999999999999999999999999765
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2e-29 Score=284.14 Aligned_cols=259 Identities=11% Similarity=0.151 Sum_probs=217.9
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC--CCCe
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 419 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~ 419 (1132)
|.+.|++++|+|+++ +|++|+.||.|+|||+.++..... ....+.+|...|.+++|+| |+++
T Consensus 10 H~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d~~~ 73 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEYGRI 73 (351)
T ss_dssp CSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGGCSE
T ss_pred cccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCCCCE
Confidence 999999999999998 699999999999999987643211 0112567999999999999 6999
Q ss_pred EEEEeCCCeEEEEEecCCCc------eeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 420 LGVAFSKHIVHLYTYNPTGE------LRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 420 las~~~dg~i~iwd~~~~~~------~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
|++|+.||.|++||+.++.. ......+.+|...|.+++|+|+ +. ++++++.||.|++||+.+++.+..+.
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhcccc
Confidence 99999999999999988642 1334467889999999999999 88 89999999999999999887544332
Q ss_pred -------------CCCCCeEEEEeeccC-CccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCeEEEEEEcCCC----C
Q 001176 492 -------------GHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADG----T 551 (1132)
Q Consensus 492 -------------~h~~~v~~i~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~----~ 551 (1132)
+|...+.+++|+|.. ++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++ +
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ 231 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence 688899999998861 248999999999998888777665 45677788999999999998 7
Q ss_pred EEEEEecCCCCCCeEEEEeCCCC----------------------------------------------ceeeeeccccC
Q 001176 552 RLFSCGTSKEGESHLVEWNESEG----------------------------------------------AIKRTYSGFRK 585 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~----------------------------------------------~~~~~~~~~~~ 585 (1132)
+|++++. |+.|++||++++ +.+..+.+|..
T Consensus 232 ~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 307 (351)
T 3f3f_A 232 LIATGCK----DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 307 (351)
T ss_dssp EEEEEET----TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSS
T ss_pred EEEEEcC----CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc
Confidence 8998875 788999999875 56677778777
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEE
Q 001176 586 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 623 (1132)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1132)
.|.+++|+|++++|++++.||.|++|++.+++....+
T Consensus 308 -~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 308 -EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp -CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred -cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 8999999999999999999999999999987655544
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=8.6e-29 Score=281.29 Aligned_cols=298 Identities=12% Similarity=0.151 Sum_probs=236.7
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccC-CccEEEEEecCCeEEEEEcCC-CCce-EEecCCCCeEEEEEEcCCCCEEEE
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDY-LGSR-VDYDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~~~l~s~s~dg~i~~wd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
|+....+.+..+.+|...|++++|+|+. +|.+|++++.||.|++||+.+ .... ..+..|...|.+++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 4556667778889999999999998862 258999999999999999997 4343 577789999999999999999999
Q ss_pred EecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEE--eCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001176 556 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF--DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 633 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1132)
++. ++.|++||+.+++.+. +..|.. .|.+++| ++++.++++++.||.|++||+.+++.+..+..+. .+.
T Consensus 104 ~~~----dg~v~iwd~~~~~~~~-~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~ 174 (368)
T 3mmy_A 104 ASC----DKTAKMWDLSSNQAIQ-IAQHDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCY 174 (368)
T ss_dssp EET----TSEEEEEETTTTEEEE-EEECSS-CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEE
T ss_pred EcC----CCcEEEEEcCCCCcee-eccccC-ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---Cce
Confidence 975 7889999999988766 445555 8999999 8999999999999999999999999988887653 345
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCC
Q 001176 634 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 713 (1132)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 713 (1132)
++.+. +..+++++.++.+.+|++.............
T Consensus 175 ~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------------------------------------ 210 (368)
T 3mmy_A 175 CADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESP------------------------------------------ 210 (368)
T ss_dssp EEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCS------------------------------------------
T ss_pred EEEec--CCeeEEEeCCCcEEEEEeccccchhhhcccc------------------------------------------
Confidence 55554 5588889999999999987552211111000
Q ss_pred CCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeeccccee
Q 001176 714 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH 793 (1132)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i 793 (1132)
T Consensus 211 -------------------------------------------------------------------------------- 210 (368)
T 3mmy_A 211 -------------------------------------------------------------------------------- 210 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCE----EEEee-CCeEEEEECCCC
Q 001176 794 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY----VMSAS-GGKVSLFNMMTF 868 (1132)
Q Consensus 794 ~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~----la~~s-dg~i~vwd~~~~ 868 (1132)
+ ...+.++++.++... +++++ ||.|++||+...
T Consensus 211 -----------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 211 -----------------------------------------L-KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp -----------------------------------------C-SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred -----------------------------------------c-cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 0 122333333333332 66666 788888888776
Q ss_pred ---eEEEEeeCCCC------------CeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCC
Q 001176 869 ---KVMTMFMSPPP------------AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 933 (1132)
Q Consensus 869 ---~~~~~~~~~~~------------~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 933 (1132)
+....+.+|.. .|++++|+| ++++|++|+.||.|++||+.+++++..+.+|...|++++|+|+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 327 (368)
T 3mmy_A 249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG 327 (368)
T ss_dssp CHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS
T ss_pred CccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC
Confidence 55666776665 799999999 89999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCcEEEEECCC
Q 001176 934 NALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 934 ~~l~s~~~D~~i~iwd~~~ 952 (1132)
++|++++.|+..+.|++-.
T Consensus 328 ~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 328 NIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp SCEEEEECCCSTTCGGGCC
T ss_pred CeEEEEecccccccccccC
Confidence 9999999998666555443
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=2.8e-29 Score=288.88 Aligned_cols=249 Identities=16% Similarity=0.224 Sum_probs=209.3
Q ss_pred cCeEEEEEcCCCCeEE-EEeCCCeEEEEEecCCCce-eeeeeeecccCCEEEEEEec-CCCcEEEEEEcCCCcEEEEECC
Q 001176 406 ISVNRCVWGPDGLMLG-VAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 406 ~~V~~v~~spdg~~la-s~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
.....++++|+...++ +++.||.|+||++...... .....+.+|.+.|.+++|+| ++. +|++|+.||.|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455689999876544 5788999999999664322 23335778999999999999 787 89999999999999999
Q ss_pred CC-------eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe--cCCCCeEEEEEEcCCCCEE
Q 001176 483 AG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPGNWCTMMAYSADGTRL 553 (1132)
Q Consensus 483 ~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l 553 (1132)
++ +.+..+.+|...|.+++|+|++. .+|++++.||.|++||+++++....+ ..|...|.+++|+|++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBT-TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCC-CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence 88 66889999999999999988642 69999999999999999999888888 7899999999999999999
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeee-ccccCCceEEEEEeCCCCEEEEE---EcCCeEEEEECCCCee-EEEEeCCCC
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAA---GDEFQIKFWDMDNMNM-LTTVDADGG 628 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~ 628 (1132)
++++. ++.|++||+++++.+..+ .+|....+.++.|+|++.++++| +.|+.|++||+.+++. +..... .+
T Consensus 192 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~ 266 (402)
T 2aq5_A 192 CTSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DT 266 (402)
T ss_dssp EEEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CC
T ss_pred EEEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cC
Confidence 99975 788999999999999988 67776458999999999999988 6899999999998664 333332 22
Q ss_pred CCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCCcc
Q 001176 629 LPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGV 662 (1132)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~ 662 (1132)
...+.+++|+|++++|+++ +.||.|++|++.++.
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 3468999999999999754 479999999998773
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-28 Score=285.04 Aligned_cols=302 Identities=11% Similarity=0.048 Sum_probs=234.5
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccc-------------------------------
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA------------------------------- 392 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~------------------------------- 392 (1132)
.++.+++|+|||+ +|+++ .++.|++||+.+|+... .+..|.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWE--FAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEE--EEEEEECCC--------------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcce--eeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 4789999999999 56655 47899999999988211 1112221100
Q ss_pred ---------cccccccccCCCCcCeEEEEEcCCCCeE-EEEeCCCeEEEEEec--CCCceeeeeeeecccCCEEEEEEec
Q 001176 393 ---------SMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIAFAH 460 (1132)
Q Consensus 393 ---------~~~~~~~~~~~h~~~V~~v~~spdg~~l-as~~~dg~i~iwd~~--~~~~~~~~~~l~~h~~~v~~v~~s~ 460 (1132)
..........+|.+.|.+++|+|+|++| ++|+.||.|++||+. +++.+.... ...|...|.+++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAE 159 (450)
T ss_dssp -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEECT
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEEcC
Confidence 0000111123577789999999999996 899999999999999 777665322 135778999999999
Q ss_pred CCCcEEEEEEcCCCcEEEEECCCCeEEE----EecCCCCCeEEEEeecc-CCccEEEEEecCCeEEEEEcCCCCceEE-e
Q 001176 461 PNKQLCIVTCGDDKMIKVWDVVAGRKQY----TFEGHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYLGSRVD-Y 534 (1132)
Q Consensus 461 d~~~~~l~s~~~dg~v~vwd~~~~~~~~----~~~~h~~~v~~i~~~~~-~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~ 534 (1132)
+++ +|++|+.||.|++|++.+++... .+.+|...|.+++|+|+ ..+.+|++++.|+.|++||++++..... +
T Consensus 160 ~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 160 DDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp TSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC
T ss_pred CCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee
Confidence 999 89999999999999998877554 77889999999999986 2248999999999999999998887776 5
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc------------------------CCceEE
Q 001176 535 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------------------------KRSLGV 590 (1132)
Q Consensus 535 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------~~~v~~ 590 (1132)
.+|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...+..
T Consensus 238 ~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 238 FGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp CCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred cCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 5888999999999 9999999985 7889999999999888876321 236889
Q ss_pred EEEeCCCCEEEEEE-cCCeEEEEEC--CCC---eeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC------CCcEEEEEc
Q 001176 591 VQFDTTRNRFLAAG-DEFQIKFWDM--DNM---NMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILAN 658 (1132)
Q Consensus 591 ~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~ 658 (1132)
++|+|+++++++++ .++.|++|++ .++ +.+..+..+ ..|.+++|+|++.++++++. +..|.+|.+
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 99999999999998 8999999999 555 666777765 37899999996533333332 455888876
Q ss_pred CC
Q 001176 659 SD 660 (1132)
Q Consensus 659 ~~ 660 (1132)
..
T Consensus 390 ~~ 391 (450)
T 2vdu_B 390 NL 391 (450)
T ss_dssp ET
T ss_pred Ec
Confidence 54
No 112
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=2.5e-27 Score=250.87 Aligned_cols=294 Identities=16% Similarity=0.159 Sum_probs=210.2
Q ss_pred CEEEEEEe-cCCCcEEEEEEcCCCcEEEEECCCC---eEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC
Q 001176 452 GVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 527 (1132)
Q Consensus 452 ~v~~v~~s-~d~~~~~l~s~~~dg~v~vwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~ 527 (1132)
.+.++.|- +..+.+.+++++ ...|++|+..++ +.++++.+|+.+|..+.+.|+..+-..++-
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------- 106 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL------------- 106 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-------------
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-------------
Confidence 35566664 344555677777 569999999999 899999999999999999886542222211
Q ss_pred CCceEEecCCCCeEEEEEEcCC----CCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEE
Q 001176 528 LGSRVDYDAPGNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 603 (1132)
Q Consensus 528 ~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1132)
-..+...|.+++++|| ++++++++. .+.+|++.+ ++.+.++
T Consensus 107 ------~~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~~-----------------------g~lv~ss 151 (356)
T 2w18_A 107 ------GNLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLTK-----------------------RRLVSSS 151 (356)
T ss_dssp ------CSSSEEEEEEECC------CCEEEEEEEE------EEEEEEETT-----------------------TEEEEEE
T ss_pred ------ccccccceEEEEECCCccccccEEEeCCC------eEEEEecCC-----------------------CcEEEec
Confidence 1234567899999999 899998763 266675433 3333332
Q ss_pred E--cCCeEEEEEC-CCCeeEEEEeCCCCCCCcceEEEcC---CCCEEEEEeCCCcEEEEEcCCcceeeeecccccccccc
Q 001176 604 G--DEFQIKFWDM-DNMNMLTTVDADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 677 (1132)
Q Consensus 604 ~--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (1132)
+ .|+.|++|++ .+++.+..+..|.. .+..++|++ ++.+|++++.|++|++||+.++ ++.+.+.+|..
T Consensus 152 ~~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~---- 224 (356)
T 2w18_A 152 GTLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS---- 224 (356)
T ss_dssp SSSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC-----
T ss_pred ccCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc----
Confidence 2 4777777777 34666667766655 788899999 7899999999999999999999 66666654321
Q ss_pred CCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCc
Q 001176 678 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 757 (1132)
Q Consensus 678 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~ 757 (1132)
T Consensus 225 -------------------------------------------------------------------------------- 224 (356)
T 2w18_A 225 -------------------------------------------------------------------------------- 224 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCC
Q 001176 758 IKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 837 (1132)
Q Consensus 758 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~ 837 (1132)
+...+.+++|+|+|..+++++.+..
T Consensus 225 ----------~v~~v~~vafSpdG~~lvs~s~~~~--------------------------------------------- 249 (356)
T 2w18_A 225 ----------YQASVCHKAYSEMGLLFIVLSHPCA--------------------------------------------- 249 (356)
T ss_dssp ------------CCCEEEEEEETTEEEEEEC-------------------------------------------------
T ss_pred ----------ceeeeEEEEECCCCCEEEEeccCCC---------------------------------------------
Confidence 1234678899999988777654311
Q ss_pred CCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEe-----eCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc
Q 001176 838 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF-----MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 911 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 911 (1132)
...+++|+ |++|++||..+++.+..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.++
T Consensus 250 -----------~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tG 315 (356)
T 2w18_A 250 -----------KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLG 315 (356)
T ss_dssp -------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTC
T ss_pred -----------cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCC
Confidence 11466777 899999999999988765 366666554444 3679999999999999999999
Q ss_pred eeeeeeccccCCee-EEEEcCCCCEEEEEcCCCcEEEEEC
Q 001176 912 EVKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSI 950 (1132)
Q Consensus 912 ~~~~~l~~h~~~V~-~l~~spdg~~l~s~~~D~~i~iwd~ 950 (1132)
+++.++.+|.+.+. +++|||||++|+||+.|++|++||+
T Consensus 316 k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999999988765 5899999999999999999999986
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=4e-27 Score=270.05 Aligned_cols=278 Identities=10% Similarity=0.075 Sum_probs=227.1
Q ss_pred eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE-EEEeCCCeEEEEEec
Q 001176 357 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYN 435 (1132)
Q Consensus 357 ~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-as~~~dg~i~iwd~~ 435 (1132)
+++++++.|+.|++||+.+++.+.. +..| ..+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 5889999999999999999876542 3334 458999999999987 667789999999999
Q ss_pred CCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEE-EEE
Q 001176 436 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FST 514 (1132)
Q Consensus 436 ~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~ 514 (1132)
+++.+. .+..+. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+ ..+.+++|+|++ ..+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg--~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDG--KKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTS--SEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCC--CEEEEEe
Confidence 887654 344343 8999999999994 3456777899999999999998888754 468999998764 555 788
Q ss_pred ecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEe
Q 001176 515 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 594 (1132)
Q Consensus 515 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~ 594 (1132)
+.|+.|++||+.+++....+..+ ..+.+++|+|++++++.++. .++.|++||+++++.+..+..+. .+.+++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEEC
Confidence 88999999999988777766654 45689999999998865442 47889999999998887776533 68899999
Q ss_pred CCCCEEEEEE---cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE-EEEeCCCcEEEEEcCCcceeeeeccc
Q 001176 595 TTRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEG 670 (1132)
Q Consensus 595 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (1132)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.++ +....+..
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~ 284 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAV 284 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEEC
Confidence 9999999987 68999999999999988887653 47899999999987 56678999999999998 66666655
Q ss_pred cc
Q 001176 671 RA 672 (1132)
Q Consensus 671 ~~ 672 (1132)
+.
T Consensus 285 ~~ 286 (391)
T 1l0q_A 285 GK 286 (391)
T ss_dssp SS
T ss_pred Cc
Confidence 44
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.3e-27 Score=278.41 Aligned_cols=317 Identities=12% Similarity=0.155 Sum_probs=246.6
Q ss_pred CCeEEEEEecC--CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE-----EecCCCCCeE
Q 001176 426 KHIVHLYTYNP--TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-----TFEGHEAPVY 498 (1132)
Q Consensus 426 dg~i~iwd~~~--~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~-----~~~~h~~~v~ 498 (1132)
++.+.+|.++. +. ......+..+ ..+.+++|+|++. ++++++.|+.|++||+.+++.+. .+.+|...|.
T Consensus 98 ~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~ 173 (433)
T 3bws_A 98 ELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE 173 (433)
T ss_dssp GGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCcee
Confidence 34335555433 32 2233344444 4566999999665 78888899999999999999887 4557999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee
Q 001176 499 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 499 ~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
+++|+++ +.++++++.|+.|++||+++.+....+..+...+.+++|+|+++++++++. .++.|++||+++++.+.
T Consensus 174 ~~~~~~~--~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~i~~~d~~~~~~~~ 248 (433)
T 3bws_A 174 TISIPEH--NELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNW---ISEDISVIDRKTKLEIR 248 (433)
T ss_dssp EEEEGGG--TEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEET---TTTEEEEEETTTTEEEE
T ss_pred EEEEcCC--CEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEec---CCCcEEEEECCCCcEEE
Confidence 9999764 489999999999999999998888888888889999999999999876652 37789999999999888
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEE--------cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE-EEEeC
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAG--------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTS 649 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~ 649 (1132)
.+..+. .+.+++|+|+++++++++ .|+.|++||+.+++.+..+.... .+.+++|+|+++.+ ++++.
T Consensus 249 ~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 249 KTDKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp ECCCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETT
T ss_pred EecCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---CcceEEECCCCCEEEEEecC
Confidence 877644 589999999999999987 48899999999998877764322 57899999999755 56688
Q ss_pred CCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccc
Q 001176 650 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 729 (1132)
Q Consensus 650 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1132)
++.|++||+.++ +....+.
T Consensus 324 ~~~v~v~d~~~~-~~~~~~~------------------------------------------------------------ 342 (433)
T 3bws_A 324 CSKIEVYDLKEK-KVQKSIP------------------------------------------------------------ 342 (433)
T ss_dssp TTEEEEEETTTT-EEEEEEE------------------------------------------------------------
T ss_pred CCEEEEEECCCC-cEEEEec------------------------------------------------------------
Confidence 999999999876 3222211
Q ss_pred ccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcc
Q 001176 730 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 809 (1132)
Q Consensus 730 ~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 809 (1132)
+...+.+++|+|+|+.+++++.+..
T Consensus 343 --------------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~----------------- 367 (433)
T 3bws_A 343 --------------------------------------VFDKPNTIALSPDGKYLYVSCRGPN----------------- 367 (433)
T ss_dssp --------------------------------------CSSSEEEEEECTTSSEEEEEECCCC-----------------
T ss_pred --------------------------------------CCCCCCeEEEcCCCCEEEEEecCCC-----------------
Confidence 2234678899999988877664410
Q ss_pred ccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeC
Q 001176 810 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 888 (1132)
Q Consensus 810 ~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 888 (1132)
.+ +..++++++ ||.|++||+.+++.+..+.. ...+.+++|+|
T Consensus 368 -----------------------------~~-------~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~ 410 (433)
T 3bws_A 368 -----------------------------HP-------TEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP 410 (433)
T ss_dssp -----------------------------CT-------TTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT
T ss_pred -----------------------------cc-------ccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC
Confidence 00 223445566 89999999999999888886 45799999999
Q ss_pred CCCCeEEEEeC-CCcEEEEEccc
Q 001176 889 QDNNIIAIGME-DSSVQIYNVRV 910 (1132)
Q Consensus 889 ~~~~~lasg~~-dg~v~iwd~~~ 910 (1132)
++++|++++. |+.|++|++..
T Consensus 411 -dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 411 -DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp -TSCEEEEEETTTTEEEEEEETT
T ss_pred -CCCEEEEEECCCCeEEEEEecC
Confidence 8888887775 99999999863
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2.1e-28 Score=275.34 Aligned_cols=283 Identities=13% Similarity=0.138 Sum_probs=216.1
Q ss_pred ceEEeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 335 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 335 ~~~~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
.++.++. |.+.|++++|||||+ +||+|+.++ ++||++.+++.... .+...+..+++
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~ 66 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRM 66 (355)
T ss_dssp ---------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEE
T ss_pred CCccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEE
Confidence 3444555 899999999999998 688888664 78999987765432 12225888999
Q ss_pred cCCCCeE-EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eEEEEec
Q 001176 414 GPDGLML-GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFE 491 (1132)
Q Consensus 414 spdg~~l-as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~ 491 (1132)
+++++.+ ++++.|++|++||..+++.+. .+. |...|.+++|+++. ++.+. |+.|++||+.++ +.+..+.
T Consensus 67 ~~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~ 137 (355)
T 3vu4_A 67 LHRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDI 137 (355)
T ss_dssp CTTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCE
T ss_pred cCCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEec
Confidence 9998887 457778999999999987665 343 67799999998764 33333 789999999988 6666655
Q ss_pred CCCCCeEEEEeeccCCccEEEE--EecCCeEEEEEcCCCC----------------ceEEecCCCCeEEEEEEcCCCCEE
Q 001176 492 GHEAPVYSVCPHHKESIQFIFS--TAIDGKIKAWLYDYLG----------------SRVDYDAPGNWCTMMAYSADGTRL 553 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s--~s~dg~i~~wd~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l 553 (1132)
. +...+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|
T Consensus 138 ~---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l 210 (355)
T 3vu4_A 138 R---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV 210 (355)
T ss_dssp E---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEE
T ss_pred c---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE
Confidence 4 344455555 34554 6899999999998765 256788999999999999999999
Q ss_pred EEEecCCCCCCe-EEEEeCCCCceeeeec-c-ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeE--EEE-----
Q 001176 554 FSCGTSKEGESH-LVEWNESEGAIKRTYS-G-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML--TTV----- 623 (1132)
Q Consensus 554 ~~~~~~~~~~~~-i~~wd~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~----- 623 (1132)
++++. |++ |++||+++++++..+. + |.. .|.+++|+|++++|++++.|+.|++||+..+... ..+
T Consensus 211 ~s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~ 285 (355)
T 3vu4_A 211 ATCSQ----DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285 (355)
T ss_dssp EEEET----TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred EEEeC----CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence 99985 887 9999999999999998 5 555 8999999999999999999999999999765311 110
Q ss_pred -------------eCC-CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 624 -------------DAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 624 -------------~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
... ........++|+++++.|++++.||.+++|++..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 001 11123477999999999999999999999998765
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.9e-27 Score=276.95 Aligned_cols=304 Identities=8% Similarity=0.049 Sum_probs=246.0
Q ss_pred ceeccCCc--ccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccC
Q 001176 325 NVYSQDDL--TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 402 (1132)
Q Consensus 325 ~~~~~d~~--~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1132)
.++..+.. ..+.+..+.....+.+++|+|+++ ++++++.++.|++||+.+++..... ....+.
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~--------------~~~~~~ 166 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLS--------------PPEKYK 166 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEEC--------------CCHHHH
T ss_pred EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeec--------------Cccccc
Confidence 44444442 235667777667788999999654 8899999999999999988765321 111245
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
+|.+.|.+++|+|+++++++++.|+.|++||+++++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||+.
T Consensus 167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~ 242 (433)
T 3bws_A 167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRK 242 (433)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECC
Confidence 799999999999999999999999999999999887655 46678899999999999984 34667789999999999
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEe--------cCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s--------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
+++.+..+..+ ..+.+++|+|++ ..+++++ .|+.|++||+.+++....+ .+...+.+++|+|+++.++
T Consensus 243 ~~~~~~~~~~~-~~~~~~~~~~~g--~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~ 318 (433)
T 3bws_A 243 TKLEIRKTDKI-GLPRGLLLSKDG--KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIY 318 (433)
T ss_dssp TTEEEEECCCC-SEEEEEEECTTS--SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEE
T ss_pred CCcEEEEecCC-CCceEEEEcCCC--CEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEE
Confidence 99998888754 458999998754 7888887 5889999999877655544 3445788999999998776
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEc---------------CCeEEEEECCCCee
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---------------EFQIKFWDMDNMNM 619 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~ 619 (1132)
+.+. .++.|++||+.+++.+..+.. .. .+.+++|+|+++++++++. ||.|++||+.+++.
T Consensus 319 ~~~~---~~~~v~v~d~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 319 VSDM---CCSKIEVYDLKEKKVQKSIPV-FD-KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EEET---TTTEEEEEETTTTEEEEEEEC-SS-SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred EEec---CCCEEEEEECCCCcEEEEecC-CC-CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 6542 478899999999988887763 33 6889999999999988875 57999999999999
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 001176 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANS 659 (1132)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~ 659 (1132)
+..+..+ ..+.+++|+|+|++|++++. |+.|++|++.
T Consensus 394 ~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 394 KEFWEAG---NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEECS---SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEecCC---CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 9888763 26899999999999998875 9999999975
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.1e-27 Score=269.55 Aligned_cols=314 Identities=8% Similarity=0.083 Sum_probs=213.9
Q ss_pred EEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEE-EE
Q 001176 568 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AV 646 (1132)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~ 646 (1132)
+|++.+.+.+.....|.. .|.+++|+|+|++|++|+.++ +++|+..+++.......+ .+..+++.++++.+ ++
T Consensus 3 i~s~~~~~~~~~~~~h~~-~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSN-PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----HLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp ----------------CC-CCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS----CCCEEEECTTSSEEEEE
T ss_pred cccccccCCccccccCCC-ceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC----CeEEEEEcCCCCEEEEE
Confidence 456666777777777766 899999999999999887664 789999988777665433 47788999988877 45
Q ss_pred EeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCC
Q 001176 647 TTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTID 726 (1132)
Q Consensus 647 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1132)
++.|++|++||..++ +....+.
T Consensus 77 ~~~d~~v~iWd~~~~-~~~~~~~--------------------------------------------------------- 98 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKK-QDVSRIK--------------------------------------------------------- 98 (355)
T ss_dssp CSSTTEEEEEETTTT-EEEEEEE---------------------------------------------------------
T ss_pred ECCccEEEEEECCCC-cEEEEEE---------------------------------------------------------
Confidence 777899999999887 3332221
Q ss_pred cccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCC
Q 001176 727 GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 806 (1132)
Q Consensus 727 ~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~ 806 (1132)
+...|.++.++++. +++ +.++.+++||+....
T Consensus 99 -----------------------------------------~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~---- 130 (355)
T 3vu4_A 99 -----------------------------------------VDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPW---- 130 (355)
T ss_dssp -----------------------------------------CSSCEEEEEECSSE--EEE-EETTEEEEEESSTTC----
T ss_pred -----------------------------------------CCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCc----
Confidence 22357788888765 232 347889999875320
Q ss_pred CccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEe--e-CCeEEEEECCCCe--------------
Q 001176 807 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA--S-GGKVSLFNMMTFK-------------- 869 (1132)
Q Consensus 807 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~--s-dg~i~vwd~~~~~-------------- 869 (1132)
+.+.. + ......+++++ .+++++ + +|.|++||+.+++
T Consensus 131 -----------------~~~~~-~------~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~ 184 (355)
T 3vu4_A 131 -----------------KRITD-D------IRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAI 184 (355)
T ss_dssp -----------------CBSSC-C------EEEEEEEEEET--TEEEEEESSCTTCEEEEECCC----------------
T ss_pred -----------------eeeEE-e------ccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccccccccc
Confidence 11110 0 11334566777 677764 4 8999999999865
Q ss_pred --EEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCc-EEEEEcccceeeeeec-c-ccCCeeEEEEcCCCCEEEEEcCCCc
Q 001176 870 --VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSS-VQIYNVRVDEVKTKLK-G-HQNRITGLAFSPTLNALVSSGADAQ 944 (1132)
Q Consensus 870 --~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~-v~iwd~~~~~~~~~l~-~-h~~~V~~l~~spdg~~l~s~~~D~~ 944 (1132)
.+..+.+|.+.|++++|+| ++++||+|+.||+ |+|||+.+++++..+. + |.+.|++++|+|++++|++++.|++
T Consensus 185 ~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~ 263 (355)
T 3vu4_A 185 LGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT 263 (355)
T ss_dssp --CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred CcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence 2688999999999999999 9999999999998 9999999999999998 5 9999999999999999999999999
Q ss_pred EEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEcc
Q 001176 945 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSC 1024 (1132)
Q Consensus 945 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~ 1024 (1132)
|++||+..+.......+.. + +.|. ++ .. .|.. ..+.....+..+...++|++
T Consensus 264 v~iw~~~~~~~~~~~~~~~----------~----~~~~--~~--~~-----~~~~-----~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 264 LHVFEIFNDQDNKRHALKG----------W----INMK--YF--QS-----EWSL-----CNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp EEEEESSCCSCCCSEETTT----------T----EECC--CC--CC-----SSCS-----EEEECCCCTTCCCCEEEESS
T ss_pred EEEEEccCCCCcccccccc----------e----eecc--cc--cc-----ccce-----eEEEeccCCCCCceEEEEeC
Confidence 9999998754222111110 0 0000 00 00 0110 00001111234457799999
Q ss_pred CCCEEEEEecCCcEEEEeCCCcce
Q 001176 1025 DGLLVYAGFCDGAIGVFDAETLRF 1048 (1132)
Q Consensus 1025 dg~~las~~~dg~i~vwd~~~~~~ 1048 (1132)
||++|++++.||.+++|++..+..
T Consensus 316 d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp SSEEEEEETTTTEEEEEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEEEEcCCC
Confidence 999999999999999999886553
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.2e-26 Score=266.06 Aligned_cols=328 Identities=11% Similarity=0.116 Sum_probs=255.8
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCeEEEE
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 544 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 544 (1132)
++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++ .++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg--~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDG--TKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS--SEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCC--CEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 78999999999999999999999988775 48999998755 555 777799999999999888777776555 89999
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCCCeeEEEE
Q 001176 545 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTV 623 (1132)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 623 (1132)
+|+|++++|++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999999877653 36889999999999888887654 58899999999987 56778999999999999998888
Q ss_pred eCCCCCCCcceEEEcCCCCEE-EEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCcccccc
Q 001176 624 DADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 702 (1132)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 702 (1132)
..+. .+.+++|+|+++.+ ++++.++.|++||+.++ +....+.
T Consensus 155 ~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~--------------------------------- 197 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK--------------------------------- 197 (391)
T ss_dssp ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE---------------------------------
T ss_pred ecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe---------------------------------
Confidence 7653 46899999999887 56677899999998765 1111000
Q ss_pred ccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCc
Q 001176 703 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL 782 (1132)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 782 (1132)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee----CC
Q 001176 783 SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GG 858 (1132)
Q Consensus 783 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s----dg 858 (1132)
+ ...+.+++|+|+|+++++++ ++
T Consensus 198 ----------------------------------------------------~-~~~~~~~~~~~~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 198 ----------------------------------------------------V-EAAPSGIAVNPEGTKAYVTNVDKYFN 224 (391)
T ss_dssp ----------------------------------------------------C-SSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred ----------------------------------------------------c-CCCccceEECCCCCEEEEEecCcCCC
Confidence 1 33456778888888777764 58
Q ss_pred eEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeE-EEEeCCCcEEEEEcccceeeeeeccccCCee---EEEEcCCC-
Q 001176 859 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT---GLAFSPTL- 933 (1132)
Q Consensus 859 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~---~l~~spdg- 933 (1132)
.|++||+.+++.+..+..|. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|++
T Consensus 225 ~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (391)
T 1l0q_A 225 TVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQP 302 (391)
T ss_dssp EEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCC
T ss_pred cEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccc
Confidence 89999999999888888764 578999999 77766 6778899999999999999888877655421 12322211
Q ss_pred ---------------------CEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE
Q 001176 934 ---------------------NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 934 ---------------------~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
..+...+.|..+++|++..+.... .......|+++|.+.+.
T Consensus 303 ~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~--------------~~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 303 VYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK--------------KQNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC--------------SSSCEECCSSCEEEEEE
T ss_pred cccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC--------------cCCCeEEeCCCceEEEE
Confidence 235566678899999998765211 11134678999988776
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=4.4e-28 Score=280.94 Aligned_cols=266 Identities=15% Similarity=0.238 Sum_probs=216.2
Q ss_pred eEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC
Q 001176 336 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 415 (1132)
Q Consensus 336 ~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 415 (1132)
....+.|.+.|++++|+|++..++|+|+.||.|+||++.+....... .........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------SGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------TCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------cccCCCcEEecCCCCCeEEEEeCC
Confidence 35556699999999999985558999999999999999863111000 000001112568999999999999
Q ss_pred CCC-eEEEEeCCCeEEEEEecCCCc----eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC---eEE
Q 001176 416 DGL-MLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQ 487 (1132)
Q Consensus 416 dg~-~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~---~~~ 487 (1132)
+++ +|++|+.||.|++|++.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 999999999999999988433 2223456789999999999995444 8999999999999999987 577
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCeEEEEEEcCCCC-EEEEEecCCCCCCe
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESH 565 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~ 565 (1132)
..+..|...|++++|+|.+. .++++|+.||.|++||++. ......+..|...|.+++|+|+++ +|++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 88889999999999998653 4899999999999999998 455678888999999999999996 5777764 788
Q ss_pred EEEEeCCC--------------CceeeeeccccCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC
Q 001176 566 LVEWNESE--------------GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 566 i~~wd~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 617 (1132)
|++||+.. .+.+..+.+|.. .|.+++|+|+++ ++++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999987 356677777776 899999999998 8899999999999998753
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.6e-29 Score=308.93 Aligned_cols=255 Identities=15% Similarity=0.191 Sum_probs=211.8
Q ss_pred Eeec-CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC
Q 001176 338 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 416 (1132)
Q Consensus 338 ~~l~-h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 416 (1132)
.++. |.+.|++++|+|+|+ ++++|+.||.|+|||+.++..... ..+.+|.+.|.+++|+|+
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~~ 64 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAHP 64 (753)
T ss_dssp -----CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECCT
T ss_pred eecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecCC
Confidence 3455 999999999999998 699999999999999984322110 126789999999999998
Q ss_pred --CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEEEEECCCCe--EEEEe
Q 001176 417 --GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--KQYTF 490 (1132)
Q Consensus 417 --g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~vwd~~~~~--~~~~~ 490 (1132)
+++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. .+++|+.||.|++||+.++. ....+
T Consensus 65 ~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~ 141 (753)
T 3jro_A 65 KFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIII 141 (753)
T ss_dssp TSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEe
Confidence 99999999999999999998752 233367789999999999999 88 89999999999999998873 44567
Q ss_pred cCCCCCeEEEEeeccC-----------CccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCeEEEEEEcCC---CCE
Q 001176 491 EGHEAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSAD---GTR 552 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~---~~~ 552 (1132)
.+|...|.+++|+|.. ++.++++|+.||.|++||+++... ...+..|...|++++|+|+ +++
T Consensus 142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~ 221 (753)
T 3jro_A 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221 (753)
T ss_dssp ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCE
Confidence 7899999999998842 458999999999999999988743 3467788999999999999 899
Q ss_pred EEEEecCCCCCCeEEEEeCCCCc-----eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 553 LFSCGTSKEGESHLVEWNESEGA-----IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
+++++. ++.|++||+.++. .......+.. .|.+++|+|+++++++++.||.|++|++..+.
T Consensus 222 l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 222 LASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEec----CCEEEEecCCCCCCcceeEEeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999975 7889999998864 2223333444 79999999999999999999999999998643
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.5e-27 Score=276.47 Aligned_cols=252 Identities=17% Similarity=0.275 Sum_probs=213.1
Q ss_pred cCCCCcCeEEEEEcCC-CCeEEEEeCCCeEEEEEecCC-------CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC
Q 001176 401 LNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPT-------GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 472 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spd-g~~las~~~dg~i~iwd~~~~-------~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~ 472 (1132)
..+|.+.|++++|+|+ +.+||+++.||.|++|++.+. ........+.+|...|.+++|+|++.. +|++|+.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~ 202 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSASD 202 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEECT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEeC
Confidence 4579999999999997 789999999999999999862 112233467899999999999999886 7999999
Q ss_pred CCcEEEEECCCCeE-------EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCCCeEE
Q 001176 473 DKMIKVWDVVAGRK-------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWCT 542 (1132)
Q Consensus 473 dg~v~vwd~~~~~~-------~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~ 542 (1132)
||.|++||+.++.. ...+.+|...|.+++|+|.. +.++++++.||.|++||+++. .....+..|...|+
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 99999999987432 45677899999999999853 379999999999999999987 45667778899999
Q ss_pred EEEEcCCCC-EEEEEecCCCCCCeEEEEeCCC-CceeeeeccccCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC---
Q 001176 543 MMAYSADGT-RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDN--- 616 (1132)
Q Consensus 543 ~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~--- 616 (1132)
+++|+|++. ++++++. ++.|++||+++ +..+..+..|.. .|.+++|+|+++ ++++++.|+.|++||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp EEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred EEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 999999998 5667764 78899999997 567788888876 899999999995 688899999999999987
Q ss_pred -----------CeeEEEEeCCCCCCCcceEEEcCCCC-EEEEEeCCCcEEEEEcCCc
Q 001176 617 -----------MNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 617 -----------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+.+..+..| ...|.+++|+|++. +|++++.||.|++|++.+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 2455555555 34799999999999 9999999999999998765
No 122
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.1e-28 Score=299.66 Aligned_cols=253 Identities=18% Similarity=0.262 Sum_probs=215.9
Q ss_pred cCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC--CCcEEEEEEcCCCcEEE
Q 001176 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 401 ~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~dg~v~v 478 (1132)
+.+|.+.|++++|+|+|++|++|+.||.|++||+.++. ......+.+|.++|++++|+|+ +. +|++|+.||.|++
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~v 81 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 81 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEEE
Confidence 67899999999999999999999999999999998543 2334468899999999999988 77 8999999999999
Q ss_pred EECCCCe--EEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCeEEEEEEcC------
Q 001176 479 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSA------ 548 (1132)
Q Consensus 479 wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~------ 548 (1132)
||+.+++ .+..+.+|...|.+++|+|+.++.++++|+.||.|++||++... ....+..|...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999987 67888899999999999987445899999999999999998873 3456678889999999999
Q ss_pred -------CCCEEEEEecCCCCCCeEEEEeCCCC----ceeeeeccccCCceEEEEEeCC---CCEEEEEEcCCeEEEEEC
Q 001176 549 -------DGTRLFSCGTSKEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 549 -------~~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~ 614 (1132)
+++++++++. ++.|++||++++ .....+.+|.. .|.+++|+|+ +.++++++.||.|++||+
T Consensus 162 ~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp -----CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred cccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 5899999975 788999999877 55667778777 8999999999 899999999999999999
Q ss_pred CCCeeE---EEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 615 DNMNML---TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 615 ~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.++... .......+...|.+++|+|+|+++++++.||.|++|++.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 886421 11222234457999999999999999999999999999865
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-27 Score=268.27 Aligned_cols=280 Identities=10% Similarity=0.049 Sum_probs=216.9
Q ss_pred EEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001176 457 AFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 536 (1132)
Q Consensus 457 ~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 536 (1132)
.+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.++|. +++++.|++|++|+...
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 3445666 89999999999999999999888876 466777777764 99999999999998642
Q ss_pred CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC--CCCEEEEEEcCCeEEEEEC
Q 001176 537 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 537 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~ 614 (1132)
.+.+||..+++.+..+...+...|.+++|+| +++++++++.||.|++||+
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence 2778898888877776633334899999999 9999999999999999999
Q ss_pred CCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccC
Q 001176 615 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 694 (1132)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 694 (1132)
.+++.+.....+. ...+.+++|+|++.+|++|+.||.|++||+.++......+..
T Consensus 157 ~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~------------------------ 211 (343)
T 3lrv_A 157 EDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV------------------------ 211 (343)
T ss_dssp SSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC------------------------
T ss_pred CCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec------------------------
Confidence 9999876664432 236999999999999999999999999998766211011000
Q ss_pred CCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEE
Q 001176 695 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVR 774 (1132)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 774 (1132)
T Consensus 212 -------------------------------------------------------------------------------- 211 (343)
T 3lrv_A 212 -------------------------------------------------------------------------------- 211 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEE
Q 001176 775 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 854 (1132)
Q Consensus 775 ~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~ 854 (1132)
.| ...|++++|+|+|.+|++
T Consensus 212 -----------------------------------------------------------~h-~~~v~~l~fs~~g~~l~s 231 (343)
T 3lrv_A 212 -----------------------------------------------------------DE-EAKIKEVKFADNGYWMVV 231 (343)
T ss_dssp -----------------------------------------------------------CT-TSCEEEEEECTTSSEEEE
T ss_pred -----------------------------------------------------------cC-CCCEEEEEEeCCCCEEEE
Confidence 14 667888888888888888
Q ss_pred eeCCeEEEEECCCCeEEEEeeC---CCCCe--EEEEEeCCCCCeEEEEeC-CCcEEEEEcccceeeeeeccccCCeeEEE
Q 001176 855 ASGGKVSLFNMMTFKVMTMFMS---PPPAA--TFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVKTKLKGHQNRITGLA 928 (1132)
Q Consensus 855 ~sdg~i~vwd~~~~~~~~~~~~---~~~~i--~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 928 (1132)
+++++|++||+.+++....+.. |...+ .+++|+| ++++|++++. |+.|+||++.+....... .++..++
T Consensus 232 ~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~ 306 (343)
T 3lrv_A 232 ECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALC 306 (343)
T ss_dssp EESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECC
T ss_pred EeCCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEe
Confidence 8877899999888776555443 33344 3699999 8999999998 999999999765433332 5677888
Q ss_pred EcC---CCCEEEEEcCCCcEEEEECCC
Q 001176 929 FSP---TLNALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 929 ~sp---dg~~l~s~~~D~~i~iwd~~~ 952 (1132)
|++ +.+.+++++.|+.+.++-...
T Consensus 307 ~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 307 LQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp C----CCCCEEEEEEETTEEEEEEECS
T ss_pred cCccccccceeEEEecCCceEEEEecC
Confidence 988 889999999999999886543
No 124
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-26 Score=270.15 Aligned_cols=242 Identities=13% Similarity=0.087 Sum_probs=204.3
Q ss_pred cCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeee--------------------------------------
Q 001176 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID-------------------------------------- 447 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~-------------------------------------- 447 (1132)
.++.+++|+|||++|+++ .++.|++||+.+++.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478999999999976665 57899999999988222111222
Q ss_pred ----------------cccCCEEEEEEecCCCcEE-EEEEcCCCcEEEEECC--CCeEEEEec--CCCCCeEEEEeeccC
Q 001176 448 ----------------AHVGGVNDIAFAHPNKQLC-IVTCGDDKMIKVWDVV--AGRKQYTFE--GHEAPVYSVCPHHKE 506 (1132)
Q Consensus 448 ----------------~h~~~v~~v~~s~d~~~~~-l~s~~~dg~v~vwd~~--~~~~~~~~~--~h~~~v~~i~~~~~~ 506 (1132)
+|.+.|++++|+|+++ + +++|+.||.|++||+. +++.+..+. .|...|.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 3445799999999999 5 4899999999999999 888888876 577899999998854
Q ss_pred CccEEEEEecCCeEEEEEcCCCCceE----EecCCCCeEEEEEEcCC---CCEEEEEecCCCCCCeEEEEeCCCCceeee
Q 001176 507 SIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSAD---GTRLFSCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 507 ~~~~l~s~s~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
.+|++++.||.|++|++.+..... .+..|...|.+++|+|+ +++|++++. ++.|++||+.+++.+..
T Consensus 162 --~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 162 --TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDK 235 (450)
T ss_dssp --SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEE
T ss_pred --CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeee
Confidence 899999999999999998776543 66778899999999999 999999975 77899999999998887
Q ss_pred -eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC-----------------------CCCCCcceE
Q 001176 580 -YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----------------------GGLPASPRL 635 (1132)
Q Consensus 580 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~~ 635 (1132)
+.+|.. .|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....|.++
T Consensus 236 ~~~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 236 WLFGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp ECCCCSS-CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred eecCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 446665 89999999 9999999999999999999999988887632 112368899
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEEc
Q 001176 636 RFNKEGSLLAVTT-SDNGIKILAN 658 (1132)
Q Consensus 636 ~~s~~~~~l~~~~-~dg~i~iw~~ 658 (1132)
+|+|++++|++++ .++.|++|++
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEe
Confidence 9999999999999 8999999998
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.6e-27 Score=272.32 Aligned_cols=303 Identities=14% Similarity=0.104 Sum_probs=201.9
Q ss_pred CCeeEEEE---ccCCCeEEEEEcCCCcEEEEecCCCccccc-----cceeeeecccccc-----cccccccCCCCcCeEE
Q 001176 344 SNVMSMDF---HPQQQTILLVGTNVGDISLWEVGSRERLAH-----KPFKVWDISAASM-----PLQNALLNDAAISVNR 410 (1132)
Q Consensus 344 ~~V~~~~~---spdg~~lla~g~~dg~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~~ 410 (1132)
....++.| +|++..++++|. |+.|.+|+......... ..+..|....... +........|...+..
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred CCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence 45666777 455555676664 78899998753322111 1111121111000 0011112345555556
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEecCCCcee--eeeeeecccCCEEEEEEec--------CCCcEEEEEEcCCCcEEEEE
Q 001176 411 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELR--QHLEIDAHVGGVNDIAFAH--------PNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 411 v~~spdg~~las~~~dg~i~iwd~~~~~~~~--~~~~l~~h~~~v~~v~~s~--------d~~~~~l~s~~~dg~v~vwd 480 (1132)
..+++++.+||+|+.|++|+|||+.+++... ....+.+|.+.|++++|+| |++ +|+||+.|++|+|||
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWR 172 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEE
Confidence 6667788899999999999999999876543 2335779999999999998 777 899999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE-------------------------ec
Q 001176 481 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-------------------------YD 535 (1132)
Q Consensus 481 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-------------------------~~ 535 (1132)
+.++.++..+.+|..+|.+++|+|.+ ..+|++++.|++|++||++++..... ..
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred CCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 99999888888999999999999864 25899999999999999987654322 13
Q ss_pred CCCCeEEEEEEc-CCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEE------------------EEEeC-
Q 001176 536 APGNWCTMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV------------------VQFDT- 595 (1132)
Q Consensus 536 ~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~------------------~~~~~- 595 (1132)
.+...+.++.|+ ++++.+++++. ++.+++||+.+++....+..+.. .+.. ..++|
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred cccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEccC
Confidence 455677888886 89999999875 78899999988776655544432 2222 22333
Q ss_pred CCC-EEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 596 TRN-RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 596 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
.+. ++++|+.||.|++||+.+++....+..+.. .|.+++|+|||++||+++.+| +.+|.+
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 233 456677899999999999988887776644 899999999999999998775 556654
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-27 Score=267.44 Aligned_cols=268 Identities=8% Similarity=0.049 Sum_probs=212.7
Q ss_pred EEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeE
Q 001176 350 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 429 (1132)
Q Consensus 350 ~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i 429 (1132)
.+.+++. ++++|+.||+|++||+.+++.+.. +. ...|.++.|+|+ +++++.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 4456776 799999999999999999876543 11 346778888888 9999999999
Q ss_pred EEEEec---------CCCceeeeeeeecccCCEEEEEEec--CCCcEEEEEEcCCCcEEEEECCCCeEEEEecC-CCCCe
Q 001176 430 HLYTYN---------PTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-HEAPV 497 (1132)
Q Consensus 430 ~iwd~~---------~~~~~~~~~~l~~h~~~v~~v~~s~--d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-h~~~v 497 (1132)
++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++|+.||+|++||+++++.+..+.. |...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999766 3332221 1226778999999999 998 899999999999999999998776644 55689
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEcCCCCce-EEecC-CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
.+++|+|+ +.+|++|+.||.|++||++++... ..+.. |...|.+++|+|++.+|++++. +.|++||+++++
T Consensus 174 ~~~~~~pd--g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-----~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHKD--SLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-----QTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECTT--SCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-----SBEEEEETTSST
T ss_pred EEEEECCC--CCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-----CeEEEEEcCCCC
Confidence 99999885 489999999999999999998887 67777 8999999999999999999972 379999999988
Q ss_pred eeeeecc---ccCCce--EEEEEeCCCCEEEEEEc-CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC---CCCEEEE
Q 001176 576 IKRTYSG---FRKRSL--GVVQFDTTRNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---EGSLLAV 646 (1132)
Q Consensus 576 ~~~~~~~---~~~~~v--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~ 646 (1132)
.+..+.. +.. .+ .+++|+|++++|++++. |+.|++|++.+....... .++..++|.+ ++..+++
T Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 247 GTLAYPTYTIPEF-KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp TCBSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred cceeecccccccc-cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence 7666554 222 23 36999999999999988 999999999765443332 2566788888 8889999
Q ss_pred EeCCCcEEEEEcCC
Q 001176 647 TTSDNGIKILANSD 660 (1132)
Q Consensus 647 ~~~dg~i~iw~~~~ 660 (1132)
++.||.+.++-...
T Consensus 320 ~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 320 VCGDGGIAAILKTN 333 (343)
T ss_dssp EEETTEEEEEEECS
T ss_pred EecCCceEEEEecC
Confidence 99999999886443
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=2.3e-26 Score=243.53 Aligned_cols=296 Identities=15% Similarity=0.090 Sum_probs=202.0
Q ss_pred cceEEeecCCC-----CeeEEEEcc-CCCe-EEEEEcCCCcEEEEecCCC---ccccccceeeeecccccccccccccCC
Q 001176 334 KTVVRTLNQGS-----NVMSMDFHP-QQQT-ILLVGTNVGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 334 ~~~~~~l~h~~-----~V~~~~~sp-dg~~-lla~g~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
.+.+..|+... .+.++-|-. ..+. .+++++ ...|++|+..++ +.+++ +..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~-------------------~~~ 84 (356)
T 2w18_A 25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYT-------------------WHF 84 (356)
T ss_dssp EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEE-------------------EEC
T ss_pred eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEE-------------------Eec
Confidence 45566666333 355555544 3333 344444 689999999988 44432 455
Q ss_pred CCcCeEEEEEcCCCCe-EEEEeCCC-eEEEEEecC--C-CceeeeeeeecccCCEEEEEEecCCCcEEEEEEc--CCCcE
Q 001176 404 AAISVNRCVWGPDGLM-LGVAFSKH-IVHLYTYNP--T-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDKMI 476 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~-las~~~dg-~i~iwd~~~--~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~--~dg~v 476 (1132)
|+.+|..+.++||..- +.++-.+= .-.++.+.- . +...+...-.+|...|..+ ++++ ++.+++ .|+.|
T Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V 159 (356)
T 2w18_A 85 AEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQV 159 (356)
T ss_dssp CSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEE
T ss_pred cCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcE
Confidence 7777777777775432 22221111 111111111 0 0111111123444445444 5555 555543 69999
Q ss_pred EEEEC-CCCeEEEEecCCCCCeEEEEeec-cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC---eEEEEEEcCCCC
Q 001176 477 KVWDV-VAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSADGT 551 (1132)
Q Consensus 477 ~vwd~-~~~~~~~~~~~h~~~v~~i~~~~-~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~ 551 (1132)
++|++ .+|+.+..+.+|...+..++|++ .+++.+|++++.|++|++||+.+++.+..+..+.. .+.+++|+|+|+
T Consensus 160 ~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~ 239 (356)
T 2w18_A 160 EVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL 239 (356)
T ss_dssp EEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTE
T ss_pred EEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC
Confidence 99999 55888888889999999999998 67779999999999999999999999888876543 677889999999
Q ss_pred EEEEEec--------CCCCCCeEEEEeCCCCceeeee-----ccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 552 RLFSCGT--------SKEGESHLVEWNESEGAIKRTY-----SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 552 ~l~~~~~--------~~~~~~~i~~wd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
++++++. ++..+++|++||..+++.+..+ .+|.. .+.+..++ +..+++++.|++|+|||+.+++
T Consensus 240 ~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk 316 (356)
T 2w18_A 240 LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFLEGDVK--DHCAAAILTSGTIAIWDLLLGQ 316 (356)
T ss_dssp EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEEEEEEE--TTEEEEEETTSCEEEEETTTCS
T ss_pred EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-eeEccccC--CCEEEEEcCCCcEEEEECCCCc
Confidence 8866442 2245889999999999987765 35544 34334444 7889999999999999999999
Q ss_pred eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 619 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 619 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
.+.++..|... .+.+++|+|||++|++|+.|++|++||+
T Consensus 317 ~l~tL~gH~~~-vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 CTALLPPVSDQ-HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECCC--C-CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCC-eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999876441 2446899999999999999999999985
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=2.6e-25 Score=262.92 Aligned_cols=324 Identities=12% Similarity=0.122 Sum_probs=251.9
Q ss_pred EEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEc--CCCCceEEe
Q 001176 457 AFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY--DYLGSRVDY 534 (1132)
Q Consensus 457 ~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~--~~~~~~~~~ 534 (1132)
+|+|++. ++++++.|++|.+||..+++++.++..+.. +..++|+|+ |++|++++.|++|++||+ .+.+....+
T Consensus 144 ~~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spd--g~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSAS--GRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTT--SCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ccCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCC--CCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 3788887 899999999999999999999999984333 889999874 489999999999999999 676666666
Q ss_pred cCCCCeEEEEEEcC----CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc----------cCCceEEEEEeCCCCEE
Q 001176 535 DAPGNWCTMMAYSA----DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF----------RKRSLGVVQFDTTRNRF 600 (1132)
Q Consensus 535 ~~~~~~v~~~~~s~----~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l 600 (1132)
. .+..+..++|+| ||+++++++. .+++|.+||..+++++..+..+ ....+..+.++|++..+
T Consensus 219 ~-~g~~p~~va~sp~~~~dg~~l~v~~~---~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 219 K-IGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp E-CCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred e-cCCCcceEEeCCCcCCCCCEEEEEEc---cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 6 456789999999 9999998874 3678999999999998887652 23368889999988665
Q ss_pred EE-EEcCCeEEEEECCCCeeEE--EEeCCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCcceeeeeccccccccc
Q 001176 601 LA-AGDEFQIKFWDMDNMNMLT--TVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKN 676 (1132)
Q Consensus 601 ~~-~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 676 (1132)
++ ...++.|.+||+.+.+.+. .+.. ...+..++|+|+|+++++++ .+++|.+||..++ ++...+....
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~---- 366 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGK---- 366 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSS----
T ss_pred EEEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCC----
Confidence 54 5688999999998866544 4432 23578899999999877655 5889999999887 4333221100
Q ss_pred cCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCC
Q 001176 677 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 756 (1132)
Q Consensus 677 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~ 756 (1132)
T Consensus 367 -------------------------------------------------------------------------------- 366 (543)
T 1nir_A 367 -------------------------------------------------------------------------------- 366 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCC
Q 001176 757 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 836 (1132)
Q Consensus 757 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~ 836 (1132)
..|
T Consensus 367 ----------------------------------------------------------------------------~ph- 369 (543)
T 1nir_A 367 ----------------------------------------------------------------------------TPH- 369 (543)
T ss_dssp ----------------------------------------------------------------------------SBC-
T ss_pred ----------------------------------------------------------------------------CCC-
Confidence 002
Q ss_pred CCCeeEEEEeeC-CCEEEEee--CCeEEEEECCC-------CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEe-------C
Q 001176 837 EESAACIALSKN-DSYVMSAS--GGKVSLFNMMT-------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-------E 899 (1132)
Q Consensus 837 ~~~v~~~~~s~d-g~~la~~s--dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~-------~ 899 (1132)
......+ ++|+ |..++++. |++|.+||+.+ +++++++.+|.+.+..++|+| ++++|++++ .
T Consensus 370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHH
T ss_pred CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCccc
Confidence 2222222 3565 55566653 68899999888 899999999999999999999 899999887 2
Q ss_pred CCcEEEEEcccceee-eee--------ccccCCeeEEEEcCCCCEEEEE-----cCCCcEEEEECCCcccc
Q 001176 900 DSSVQIYNVRVDEVK-TKL--------KGHQNRITGLAFSPTLNALVSS-----GADAQLCMWSIDKWEKL 956 (1132)
Q Consensus 900 dg~v~iwd~~~~~~~-~~l--------~~h~~~V~~l~~spdg~~l~s~-----~~D~~i~iwd~~~~~~~ 956 (1132)
+++|.+||+.+++.. ..+ ..+...+..++|+|+|+.++.+ +.|+.|.+||.++++.+
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 679999999998766 443 3567889999999999998865 24799999999998754
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=9.1e-25 Score=258.21 Aligned_cols=337 Identities=10% Similarity=0.068 Sum_probs=250.6
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEEC--CCCeEEEE
Q 001176 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV--VAGRKQYT 489 (1132)
Q Consensus 412 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~--~~~~~~~~ 489 (1132)
+|+|++.++++++.|++|.+||..+++.+. ++..+.. +.+++|+|||+ ++++++.|++|.+||+ .+++.+.+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~---~i~~g~~-~~~v~~spdg~--~l~v~~~d~~V~v~D~~~~t~~~~~~ 217 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVK---VIDTGYA-VHISRMSASGR--YLLVIGRDARIDMIDLWAKEPTKVAE 217 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEE---EEECSTT-EEEEEECTTSC--EEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEE---EEecCcc-cceEEECCCCC--EEEEECCCCeEEEEECcCCCCcEEEE
Confidence 378999999999999999999999988765 4442222 88999999999 8999999999999999 89999988
Q ss_pred ecCCCCCeEEEEeecc--CCccEEEEEe-cCCeEEEEEcCCCCceEEecCC-----------CCeEEEEEEcCCCCEEEE
Q 001176 490 FEGHEAPVYSVCPHHK--ESIQFIFSTA-IDGKIKAWLYDYLGSRVDYDAP-----------GNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~--~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~~-----------~~~v~~~~~s~~~~~l~~ 555 (1132)
+. +...+..++|+|. .+|+++++++ .+++|.+||..+.+.+..+..+ ...+.++.++|++..+++
T Consensus 218 i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 218 IK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp EE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred Ee-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence 87 4556799999870 0347888777 5899999999998887766542 237889999999888776
Q ss_pred EecCCCCCCeEEEEeCCCCceee--eeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001176 556 CGTSKEGESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
... +++.|.+||..+++.+. .+. + ...+..++|+|+|+++++++ .+++|.+||..+++++..+........-
T Consensus 297 s~~---~~g~i~vvd~~~~~~l~~~~i~-~-~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g 371 (543)
T 1nir_A 297 NVK---ETGKVLLVNYKDIDNLTVTSIG-A-APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 371 (543)
T ss_dssp EET---TTTEEEEEECTTSSSCEEEEEE-C-CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCT
T ss_pred EEC---CCCeEEEEEecCCCcceeEEec-c-CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCC
Confidence 653 57899999998876544 333 2 22577899999999887765 6899999999999999888742211111
Q ss_pred ceEE-EcCC-CCEEEEEe-CCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCC
Q 001176 633 PRLR-FNKE-GSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLER 709 (1132)
Q Consensus 633 ~~~~-~s~~-~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 709 (1132)
..+. ++|+ +..++++. .|++|.+|+..+.. |....
T Consensus 372 ~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~--------~~~~~---------------------------------- 409 (543)
T 1nir_A 372 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN--------HPQYA---------------------------------- 409 (543)
T ss_dssp TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT--------CTTTB----------------------------------
T ss_pred CCcccCCCCCccEEEeccCCCceEEEEEeCCCC--------Cchhc----------------------------------
Confidence 2233 4676 66666665 57999999987631 10000
Q ss_pred CCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecc
Q 001176 710 PDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS 789 (1132)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 789 (1132)
. +
T Consensus 410 ------------------------------------------------------------~-----------~------- 411 (543)
T 1nir_A 410 ------------------------------------------------------------W-----------K------- 411 (543)
T ss_dssp ------------------------------------------------------------T-----------S-------
T ss_pred ------------------------------------------------------------C-----------e-------
Confidence 0 0
Q ss_pred cceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee--------CCeEE
Q 001176 790 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--------GGKVS 861 (1132)
Q Consensus 790 dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s--------dg~i~ 861 (1132)
.++. +.+ | ...+..++++|||++|++++ +++|.
T Consensus 412 --~v~~----------------------------------l~~--~-g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 412 --KVAE----------------------------------LQG--Q-GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp --EEEE----------------------------------EEC--S-CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred --EEEE----------------------------------EEc--C-CCCceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence 0000 000 2 34456688888988888876 56899
Q ss_pred EEECCCCeEE-EEe--------eCCCCCeEEEEEeCCCCCeEEEEe-----CCCcEEEEEcccceeeeeeccc
Q 001176 862 LFNMMTFKVM-TMF--------MSPPPAATFLAFHPQDNNIIAIGM-----EDSSVQIYNVRVDEVKTKLKGH 920 (1132)
Q Consensus 862 vwd~~~~~~~-~~~--------~~~~~~i~~l~~sp~~~~~lasg~-----~dg~v~iwd~~~~~~~~~l~~h 920 (1132)
+||+.+++.. ..+ ..+...+..++|+| +|+.|.++. .|+.|.|||..+++++.+++.+
T Consensus 453 v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 453 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp EEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 9999988876 443 35677899999999 888887663 4799999999999999988754
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.9e-26 Score=263.32 Aligned_cols=247 Identities=7% Similarity=-0.063 Sum_probs=174.7
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC------
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP------ 415 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp------ 415 (1132)
|...+....++++++ ++|+|+.|++|+|||+.+++...... ...+.+|.+.|.+++|+|
T Consensus 88 ~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~--------------~~~~~gH~~~v~~v~~~p~~~~~~ 152 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHV--------------LGGKSGHHNFVNDIDIADVYSADN 152 (393)
T ss_dssp ---------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEE--------------ECTTTSCSSCEEEEEEEEEECTTC
T ss_pred cCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeee--------------ecccCCCCCceEEEEEcccccccc
Confidence 334444445555665 79999999999999999886543211 123789999999999998
Q ss_pred --CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE----
Q 001176 416 --DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---- 489 (1132)
Q Consensus 416 --dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~---- 489 (1132)
||++||+|+.|++|+|||+.++.... .+.+|..+|.+++|+|++.. +|++|+.|++|++||+.+++....
T Consensus 153 ~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~~ 228 (393)
T 4gq1_A 153 RLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQT 228 (393)
T ss_dssp SEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC--------
T ss_pred CCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCccccccccc
Confidence 89999999999999999998876544 46678999999999999864 799999999999999998765432
Q ss_pred ---------------------ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEc-
Q 001176 490 ---------------------FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS- 547 (1132)
Q Consensus 490 ---------------------~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s- 547 (1132)
..+|...|.++.|.+ .++..+++++.|+++++||+........+..+...+..+.+.
T Consensus 229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP 307 (393)
T ss_dssp --CSCCCSEEEESGGGC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEEC-------------------CCSC
T ss_pred CCcccceEEecccccceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc
Confidence 236778888998863 356899999999999999998776655554444443333332
Q ss_pred -----------------C-CCCEE-EEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCe
Q 001176 548 -----------------A-DGTRL-FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ 608 (1132)
Q Consensus 548 -----------------~-~~~~l-~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 608 (1132)
| .+..+ ++++ .++.|++||..+++....+.+|.. .|.+++|+|+|++|++++.+|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs----~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~G- 381 (393)
T 4gq1_A 308 NVQGISLFPSLLGACPHPRYMDYFATAHS----QHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGS- 381 (393)
T ss_dssp SEEEECSSCCSSCCEECSSCTTEEEEEET----TTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSE-
T ss_pred ccccccccCcceeEEEccCCCCEEEEEEC----CCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCC-
Confidence 2 23344 4443 488999999999998888888777 899999999999999998665
Q ss_pred EEEEEC
Q 001176 609 IKFWDM 614 (1132)
Q Consensus 609 i~iwd~ 614 (1132)
+.+|.+
T Consensus 382 v~lvrL 387 (393)
T 4gq1_A 382 VLLTRL 387 (393)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 556654
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=4e-24 Score=245.32 Aligned_cols=284 Identities=8% Similarity=0.024 Sum_probs=220.1
Q ss_pred CCeeEEEEccCCCeEEEEEc----CCC----cEEEEec--CCCccccccceeeeecccccccccccccCCCCcCeEEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGT----NVG----DISLWEV--GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 413 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 413 (1132)
..|...+|++.|..++++|+ .|| .|+|||+ .+++.+.... +.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHHH
Confidence 47888999999988888886 467 8999999 8887653211 3456666666666
Q ss_pred cC--------------CCCeEEEEeCC------CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC
Q 001176 414 GP--------------DGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 473 (1132)
Q Consensus 414 sp--------------dg~~las~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d 473 (1132)
++ .+..++.++.+ +.|++||++++. .. .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 54 26677766654 799999998543 33 4678999999999999999 78888877
Q ss_pred C---cEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEE-EEecCCe--EEEEEcCCCCceEEecCCCCeEEEEEEc
Q 001176 474 K---MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF-STAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYS 547 (1132)
Q Consensus 474 g---~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~-s~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s 547 (1132)
+ .|++||+.+++.. .+..|...+.+++|+|++ ..|+ +++.|+. |++||+.++.. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg--~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG--SKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC--CEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 9999999998875 567788899999998854 6666 6666655 99999987654 5666777889999999
Q ss_pred CCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeeEEEEe
Q 001176 548 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 624 (1132)
|||++|++++. .++...|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+ ..|++||+.+++.. .+.
T Consensus 276 pdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp TTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred CCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence 99999998873 223457999999887643 3444433 68889999999999988754 68999999988774 343
Q ss_pred CCCCCCCcceEEEcCCCCEEEEEeCCC---cEEEEEcCCc
Q 001176 625 ADGGLPASPRLRFNKEGSLLAVTTSDN---GIKILANSDG 661 (1132)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iw~~~~~ 661 (1132)
.+ . .+.+++|+|||++|++++.++ .|++||+..+
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 33 2 688999999999999988877 7999998644
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1e-23 Score=241.87 Aligned_cols=306 Identities=14% Similarity=0.147 Sum_probs=230.0
Q ss_pred cCCEEEEEEecCCCcEEEEEEc----CCC----cEEEEEC--CCCeEE--EEecCCCCCeEEEEeeccC-----------
Q 001176 450 VGGVNDIAFAHPNKQLCIVTCG----DDK----MIKVWDV--VAGRKQ--YTFEGHEAPVYSVCPHHKE----------- 506 (1132)
Q Consensus 450 ~~~v~~v~~s~d~~~~~l~s~~----~dg----~v~vwd~--~~~~~~--~~~~~h~~~v~~i~~~~~~----------- 506 (1132)
...+...+|.+.|.. ++++|+ .|| .|++||+ .+++.+ ..+.+|...+..+++.+..
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 346778889998876 676775 567 9999999 999887 4588898888877765420
Q ss_pred -CccEEEEEecC------CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeee
Q 001176 507 -SIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 507 -~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
.+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.++ ++..|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 13566666654 7999999974 45566677888999999999999999987532 2468999999998875 4
Q ss_pred eccccCCceEEEEEeCCCCEEE-EEEcCC--eEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC-CC--cE
Q 001176 580 YSGFRKRSLGVVQFDTTRNRFL-AAGDEF--QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DN--GI 653 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i 653 (1132)
+..+.. .+.+++|+|+|+.|+ +++.++ .|++||+.+++. ..+..+. ..+.+++|+|||+.|++++. ++ .|
T Consensus 218 l~~~~~-~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~--~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 218 VASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR--SNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp EECCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS--SCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred eecCCC-cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC--CcccceEECCCCCEEEEEECCCCCcEE
Confidence 555554 789999999999888 555554 599999998876 3444443 46889999999999988876 44 45
Q ss_pred EEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccc
Q 001176 654 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 733 (1132)
Q Consensus 654 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1132)
.+||+.++. .. .
T Consensus 294 ~~~d~~~~~-~~-~------------------------------------------------------------------ 305 (415)
T 2hqs_A 294 YKVNINGGA-PQ-R------------------------------------------------------------------ 305 (415)
T ss_dssp EEEETTSSC-CE-E------------------------------------------------------------------
T ss_pred EEEECCCCC-EE-E------------------------------------------------------------------
Confidence 555655441 00 0
Q ss_pred ccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccc
Q 001176 734 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 813 (1132)
Q Consensus 734 ~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 813 (1132)
T Consensus 306 -------------------------------------------------------------------------------- 305 (415)
T 2hqs_A 306 -------------------------------------------------------------------------------- 305 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-C---CeEEEEECCCCeEEEEeeCCCCCeEEEEEeCC
Q 001176 814 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 889 (1132)
Q Consensus 814 ~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~ 889 (1132)
+.. + ...+.+++|+|||++|++++ + ..|++||+.+++.. .+..+. .+.+++|+|
T Consensus 306 ----------------l~~--~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp- 363 (415)
T 2hqs_A 306 ----------------ITW--E-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP- 363 (415)
T ss_dssp ----------------CCC--S-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-
T ss_pred ----------------Eec--C-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-
Confidence 000 1 33466788888888888776 3 47999999988773 455554 899999999
Q ss_pred CCCeEEEEeCCC---cEEEEEcccceeeeeeccccCCeeEEEEcCCCC
Q 001176 890 DNNIIAIGMEDS---SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 934 (1132)
Q Consensus 890 ~~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 934 (1132)
++++|++++.++ .|++||+. +.....+.+|.+.|.+++|+|...
T Consensus 364 dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 364 NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 899998888777 79999986 555778899999999999999653
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=3.1e-23 Score=259.17 Aligned_cols=299 Identities=12% Similarity=0.087 Sum_probs=213.8
Q ss_pred CCCeeEEEEccCCCeEEEEEcC-CC-----cEEEEecCCCccccccceeeeeccccc----------ccccccccCCCCc
Q 001176 343 GSNVMSMDFHPQQQTILLVGTN-VG-----DISLWEVGSRERLAHKPFKVWDISAAS----------MPLQNALLNDAAI 406 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~-dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~h~~ 406 (1132)
...|.+++|||||++ |++++. |+ .|++||+.+++.... .+..... ...+...-.....
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLL-----VDSKVVLPGTETLSDEEKARRERQRIAAMT 109 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEE-----ECGGGTC--------------------CCE
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEc-----cchhhcccccccccchhhhhhhhhhhcccc
Confidence 457999999999994 666666 88 999999998875432 1000000 0000000000013
Q ss_pred CeEEEEEcCCCCeEEEEeCCCeEEEEEecCCC--ceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001176 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 484 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~ 484 (1132)
.|.+++|||||++|++++. +.|++||+.++. ... .+..|...+.+++|+|||+ .|++++ ++.|++||+.++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g 182 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASG 182 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCC
Confidence 4889999999999999986 999999999872 232 3567888999999999999 677776 569999999998
Q ss_pred eEEEEecCCCCC----------------eEEEEeeccCCccEEEEEecCC------------------------------
Q 001176 485 RKQYTFEGHEAP----------------VYSVCPHHKESIQFIFSTAIDG------------------------------ 518 (1132)
Q Consensus 485 ~~~~~~~~h~~~----------------v~~i~~~~~~~~~~l~s~s~dg------------------------------ 518 (1132)
+.......+... +.+++|+|++ +.|++++.|+
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS--SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCC--CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 876555444432 4778898754 7888887765
Q ss_pred ---eEEEEEcCC-CCceEEec--CCCCeEEEEEEcCCCCEEEEEec-CCCCCCeEEEEeCCCCceeeeeccccCC---ce
Q 001176 519 ---KIKAWLYDY-LGSRVDYD--APGNWCTMMAYSADGTRLFSCGT-SKEGESHLVEWNESEGAIKRTYSGFRKR---SL 588 (1132)
Q Consensus 519 ---~i~~wd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~---~v 588 (1132)
.|++||+.+ ++...... .+...+..++| |||++|++.+. ....+..|++||+.+++....+..+... .+
T Consensus 261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLH 339 (741)
T ss_dssp CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence 889999987 66544332 35668999999 99999997764 2234678999999999887777655432 23
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECC-CCeeEEEEeCCCCCCCcceE-EEcCCCCEEEEEe-CCC--cEEEEEcCC
Q 001176 589 GVVQFDTTRNRFLAAGDEFQIKFWDMD-NMNMLTTVDADGGLPASPRL-RFNKEGSLLAVTT-SDN--GIKILANSD 660 (1132)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~-~dg--~i~iw~~~~ 660 (1132)
..++|+|||+++++++.+|.+++|.+. ++. ...+..+. ..+..+ .|+|+|+.|+..+ .++ .+++|++..
T Consensus 340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp SCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 578999999988888889877777765 344 55555442 356676 5999999776554 454 889998753
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=8.9e-23 Score=255.08 Aligned_cols=328 Identities=10% Similarity=0.017 Sum_probs=238.2
Q ss_pred cCCEEEEEEecCCCcEEEEEEcC-CC-----cEEEEECCCCeEEEEecCCCC------------------------CeEE
Q 001176 450 VGGVNDIAFAHPNKQLCIVTCGD-DK-----MIKVWDVVAGRKQYTFEGHEA------------------------PVYS 499 (1132)
Q Consensus 450 ~~~v~~v~~s~d~~~~~l~s~~~-dg-----~v~vwd~~~~~~~~~~~~h~~------------------------~v~~ 499 (1132)
...+.+++|+|||+ +|++++. |+ .|++||+.+++....+..+.. .|.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 34689999999999 7888887 88 999999999988777655433 3788
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCcee
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 577 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1132)
++|+|+ |++|++++. +.|++||+.++. ....+..+...+..++|||||++|+.++ ++.|++||+.+++..
T Consensus 114 ~~~SpD--g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-----~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQWSPD--AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-----GRNLWVIDLASGRQM 185 (741)
T ss_dssp CEECTT--SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-----TTEEEEEETTTTEEE
T ss_pred eEECCC--CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-----CCcEEEEecCCCCEE
Confidence 899875 488888886 999999998873 4445666777899999999999999886 347999999988776
Q ss_pred eeeccccCC---------------ceEEEEEeCCCCEEEEEEcCC---------------------------------eE
Q 001176 578 RTYSGFRKR---------------SLGVVQFDTTRNRFLAAGDEF---------------------------------QI 609 (1132)
Q Consensus 578 ~~~~~~~~~---------------~v~~~~~~~~~~~l~~~~~dg---------------------------------~i 609 (1132)
.....+... .+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 554433321 136799999999999987665 89
Q ss_pred EEEECCC-CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC-----CCcEEEEEcCCcceeeeeccccccccccCCCCCC
Q 001176 610 KFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-----DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 683 (1132)
Q Consensus 610 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1132)
++||+.+ ++.........+...+..++| |||+.|++++. +..|++||+.++ +....+..+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~------------ 331 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHET------------ 331 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEE------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcC------------
Confidence 9999988 876554432223346889999 99999987764 456777776655 111111000
Q ss_pred CCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEec
Q 001176 684 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 763 (1132)
Q Consensus 684 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~ 763 (1132)
T Consensus 332 -------------------------------------------------------------------------------- 331 (741)
T 2ecf_A 332 -------------------------------------------------------------------------------- 331 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEE
Q 001176 764 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 843 (1132)
Q Consensus 764 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~ 843 (1132)
.++ . ...+..+
T Consensus 332 -------------------------~~~-------------------------------------------~-~~~~~~~ 342 (741)
T 2ecf_A 332 -------------------------SPT-------------------------------------------W-VPLHNSL 342 (741)
T ss_dssp -------------------------CSS-------------------------------------------C-CCCCSCC
T ss_pred -------------------------CCC-------------------------------------------c-CCcCCce
Confidence 000 0 1123457
Q ss_pred EEeeCCCEEEEee-CCeEEEEECC-CCeEEEEeeCCCCCeEEE-EEeCCCCCeE-EEEeCCC--cEEEEEccc-ceeeee
Q 001176 844 ALSKNDSYVMSAS-GGKVSLFNMM-TFKVMTMFMSPPPAATFL-AFHPQDNNII-AIGMEDS--SVQIYNVRV-DEVKTK 916 (1132)
Q Consensus 844 ~~s~dg~~la~~s-dg~i~vwd~~-~~~~~~~~~~~~~~i~~l-~~sp~~~~~l-asg~~dg--~v~iwd~~~-~~~~~~ 916 (1132)
+|+|||+++++++ +|.++||.++ +++ ...+..|...+..+ .|+| +++.| ++++.++ .++||++.. +.....
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~ 420 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQR 420 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEE
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeee
Confidence 7888888777776 6766666654 344 67777788888887 5999 77655 4555555 899999875 555666
Q ss_pred eccccCCeeEEEEcCCCCEEEEEcCC----CcEEEEECCCc
Q 001176 917 LKGHQNRITGLAFSPTLNALVSSGAD----AQLCMWSIDKW 953 (1132)
Q Consensus 917 l~~h~~~V~~l~~spdg~~l~s~~~D----~~i~iwd~~~~ 953 (1132)
+.. ...+..++|||||++|+....+ ..+.+|+..++
T Consensus 421 l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 421 LSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred ccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 765 6678899999999998876544 46889988654
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=3.8e-23 Score=257.68 Aligned_cols=288 Identities=9% Similarity=0.080 Sum_probs=211.3
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCc---CeEEEEEcCCCCeE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI---SVNRCVWGPDGLML 420 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~spdg~~l 420 (1132)
..+.+++|||||+ ++++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++|
T Consensus 17 ~~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l 75 (723)
T 1xfd_A 17 IHDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYA 75 (723)
T ss_dssp CCCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEE
T ss_pred ccccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEE
Confidence 3578899999998 5666 6799999999999875432 334443 49999999999999
Q ss_pred EEEeCC---------CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 421 GVAFSK---------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 421 as~~~d---------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
|+++.+ +.+.+||+.+++. .......+|...+.+++|||||+ .|++++. +.|++||+.+++......
T Consensus 76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEec
Confidence 999764 7889999998875 22223334556689999999999 6777774 799999999988776655
Q ss_pred CCCCCe------------------EEEEeeccCCccEEEEEecCC----------------------------------e
Q 001176 492 GHEAPV------------------YSVCPHHKESIQFIFSTAIDG----------------------------------K 519 (1132)
Q Consensus 492 ~h~~~v------------------~~i~~~~~~~~~~l~s~s~dg----------------------------------~ 519 (1132)
.+...+ .+++|+|++ +.|++++.|+ .
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 229 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG--TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSIS 229 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS--SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEE
T ss_pred CCCCCceECcccceeEEEEeccCcceEEECCCC--CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeE
Confidence 544433 789998754 7888887653 7
Q ss_pred EEEEEcCCCCceEEecCC------CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCce----E
Q 001176 520 IKAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL----G 589 (1132)
Q Consensus 520 i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v----~ 589 (1132)
|++||+.++.....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+....+ .
T Consensus 230 l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 309 (723)
T 1xfd_A 230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNE 309 (723)
T ss_dssp EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCC
T ss_pred EEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCC
Confidence 999999887765555543 568899999999998877664434467899999999987776654433233 3
Q ss_pred EEEEeCCCCEEEEE--EcCC------eEEEEE-CCCCee--EEEEeCCCCCCCcce-EEEcCCCCEEEEEeCC---CcEE
Q 001176 590 VVQFDTTRNRFLAA--GDEF------QIKFWD-MDNMNM--LTTVDADGGLPASPR-LRFNKEGSLLAVTTSD---NGIK 654 (1132)
Q Consensus 590 ~~~~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d---g~i~ 654 (1132)
.++|+|||+.|+.. ..++ .|++|| ..+++. ...+... ...+.. ++|+|||+.|+..+.+ +.++
T Consensus 310 ~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 387 (723)
T 1xfd_A 310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQ 387 (723)
T ss_dssp CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCCE
T ss_pred CceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcceE
Confidence 68999999977764 4566 577788 344441 3333321 113444 6899999999877665 7889
Q ss_pred EEEcCC
Q 001176 655 ILANSD 660 (1132)
Q Consensus 655 iw~~~~ 660 (1132)
+|++..
T Consensus 388 l~~~~~ 393 (723)
T 1xfd_A 388 LYSANT 393 (723)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 998764
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=2.2e-21 Score=216.37 Aligned_cols=281 Identities=10% Similarity=0.078 Sum_probs=207.3
Q ss_pred EEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC-CC
Q 001176 349 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-KH 427 (1132)
Q Consensus 349 ~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~-dg 427 (1132)
..|.+++++++++++.++.|.+||..+++.+.. +..+...+ +++|+|||+++++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777777889999999999999999876542 22244556 9999999997776655 88
Q ss_pred eEEEEEecCCCc-eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC---cEEEEECCCCeEEEEecCCCCCeEEEEee
Q 001176 428 IVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK---MIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503 (1132)
Q Consensus 428 ~i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg---~v~vwd~~~~~~~~~~~~h~~~v~~i~~~ 503 (1132)
.|.+||..+++. .. .+..+..+..+++|+|+|+ +++++..++ .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999998876 33 3455666665699999999 666555443 8999999999998887654 456899998
Q ss_pred ccCCccEEEEEecCCe-EEEEEcCCCCceE----EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce--
Q 001176 504 HKESIQFIFSTAIDGK-IKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-- 576 (1132)
Q Consensus 504 ~~~~~~~l~s~s~dg~-i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-- 576 (1132)
|++. .++++...++. |.+|+++..+... ...........++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 137 pdg~-~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 137 PNGN-GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp TTSS-CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred CCCC-EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 8652 25555566688 9999998655442 22233456889999999998776653 477899999999988
Q ss_pred -eeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCee--EEEEeCC--CCCCC---cceEEEcCCCCEEEEE
Q 001176 577 -KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM--LTTVDAD--GGLPA---SPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 577 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~~---v~~~~~s~~~~~l~~~ 647 (1132)
+..+.... .+..++|+|+|+++++++ .++.|.+||..+++. +..+... ..... ...++|+|||++|+++
T Consensus 213 ~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 213 LLNAVGTNN--LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EEEEEECSS--CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred eeeeccCCC--CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 77776542 577899999999877665 578899999999887 4444322 11112 2458999999988766
Q ss_pred eC-CCcEEEEEcCCc
Q 001176 648 TS-DNGIKILANSDG 661 (1132)
Q Consensus 648 ~~-dg~i~iw~~~~~ 661 (1132)
+. ++.|.+||+.+.
T Consensus 291 ~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 291 ANISRELKVFTISGK 305 (331)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred cCCCCcEEEEEecCC
Confidence 55 669999999765
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=3.8e-22 Score=248.66 Aligned_cols=382 Identities=11% Similarity=0.064 Sum_probs=250.0
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCC--ceEEEEEeCCCCEEEEEEcC---------Ce
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDE---------FQ 608 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d---------g~ 608 (1132)
.+.+++|+|||+++++ + .++.|++||+.+++....+..+... .+.+++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~----~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-E----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-C----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-e----CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997765 3 3668999999999888777766531 38899999999999998764 78
Q ss_pred EEEEECCCCeeEEEEeC-CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCc
Q 001176 609 IKFWDMDNMNMLTTVDA-DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 687 (1132)
Q Consensus 609 i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1132)
+++||+.+++. ..+.. ..+...+..++|+|||+.|++++. +.|++|++.++ +..+....+...+.
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g-~~~~~~~~~~~~~~----------- 158 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK-QAIRVVSTGKEGVI----------- 158 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS-CCEEEECCCBTTTE-----------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC-ceEEEecCCCCCce-----------
Confidence 89999999876 33332 222234889999999999999886 79999999877 33322221110000
Q ss_pred ccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcc
Q 001176 688 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 767 (1132)
Q Consensus 688 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~ 767 (1132)
..+ +.-|-.. ..
T Consensus 159 -------------------------------------------------~~g----~~~~v~~---------------ee 170 (723)
T 1xfd_A 159 -------------------------------------------------YNG----LSDWLYE---------------EE 170 (723)
T ss_dssp -------------------------------------------------EEE----ECCHHHH---------------HT
T ss_pred -------------------------------------------------ECc----ccceeEE---------------EE
Confidence 000 0000000 00
Q ss_pred cccceEEEEEecCCceEEeeccc-ceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEe
Q 001176 768 AASKVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 846 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s 846 (1132)
-...+.+++|+|||+.|+.++.+ +.+.+|++.... + .+ ...+..+.|.
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~--------------------~----------~~-~~~~~~~~~~ 219 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------------G----------SI-YPTVKPYHYP 219 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS--------------------S----------SS-SCCCEEEECC
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccC--------------------C----------cC-CCcceeccCC
Confidence 11245789999999999888765 467777653100 0 01 3347788898
Q ss_pred eCCCEEEEeeCCeEEEEECCCCeEEEEeeCC------CCCeEEEEEeCCCCCeEEEEeC----CCcEEEEEcccceeeee
Q 001176 847 KNDSYVMSASGGKVSLFNMMTFKVMTMFMSP------PPAATFLAFHPQDNNIIAIGME----DSSVQIYNVRVDEVKTK 916 (1132)
Q Consensus 847 ~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~sp~~~~~lasg~~----dg~v~iwd~~~~~~~~~ 916 (1132)
++|.. ..+.+|++||+.+++....+..+ ...+..++|+| +|++|++... +..|++||+.+++....
T Consensus 220 ~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 220 KAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp BTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred CCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 88863 22468999999998866666654 56789999999 8888877653 35799999999987766
Q ss_pred eccc-cCCe----eEEEEcCCCCEEEE--EcCCC------cEEEEE-CCCcccccceeeeCCCCCCCCCCCcee-EEECC
Q 001176 917 LKGH-QNRI----TGLAFSPTLNALVS--SGADA------QLCMWS-IDKWEKLKSRFIQAPAGRQSPLVGETK-VQFHN 981 (1132)
Q Consensus 917 l~~h-~~~V----~~l~~spdg~~l~s--~~~D~------~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~ 981 (1132)
+..+ ...+ ..++|||||+.|+. ...++ .|.+|| ..+++......+. .++ ..+.. ++|+|
T Consensus 296 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~----~~~~~~~~~sp 369 (723)
T 1xfd_A 296 HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGD----WDVTKILAYDE 369 (723)
T ss_dssp EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSS----SCEEEEEEEET
T ss_pred EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee--cCC----eEEEeeeEEcC
Confidence 5443 3434 37899999998775 44666 466677 3333200001111 111 23343 69999
Q ss_pred CCcEEEE-EeC---CeEEEEeCC--CC-ceeecCCCCCCCCCeEEEEEccCCCEEEEEecC-C--cEEEEeCCCccee
Q 001176 982 DQTHLLV-VHE---SQISVYDSK--LE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-G--AIGVFDAETLRFR 1049 (1132)
Q Consensus 982 dg~~l~~-~~d---~~v~vwd~~--~~-~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d-g--~i~vwd~~~~~~~ 1049 (1132)
||+.|+. +.+ +.+++|++. +. ....+.....|...+..++|||||++|+..... + .+.+++..++..+
T Consensus 370 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~ 447 (723)
T 1xfd_A 370 KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKM 447 (723)
T ss_dssp TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEE
Confidence 9999987 444 779999983 22 223232211146778999999999988875432 2 2445566555544
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1.1e-20 Score=212.95 Aligned_cols=279 Identities=11% Similarity=0.093 Sum_probs=217.1
Q ss_pred EEeecCCCCeeEEEEccCCCeEEEEEcC------CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEE
Q 001176 337 VRTLNQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 410 (1132)
Q Consensus 337 ~~~l~h~~~V~~~~~spdg~~lla~g~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 410 (1132)
+........+..++|+|+|++++++... ++.|.+||..+++.+.. +. ....+..
T Consensus 34 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~ 93 (353)
T 3vgz_A 34 MLRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFG 93 (353)
T ss_dssp EEEEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCS
T ss_pred hhhhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcce
Confidence 3444556789999999999965555433 67899999998876542 11 2334778
Q ss_pred EEEcCCCCeEEEE-eCCCeEEEEEecCCCceeeeeeeecccC---------CEEEEEEecCCCcEEEEEE--cCCCcEEE
Q 001176 411 CVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVG---------GVNDIAFAHPNKQLCIVTC--GDDKMIKV 478 (1132)
Q Consensus 411 v~~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~---------~v~~v~~s~d~~~~~l~s~--~~dg~v~v 478 (1132)
++|+|||++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+++. ++++ +.++.|.+
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNT--VYISGIGKESVIWV 168 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTE--EEEEEESSSCEEEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCE--EEEEecCCCceEEE
Confidence 9999999966554 5579999999999876553 333322 2788999999995 4443 46889999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC----CCCeEEEEEEcCCCCEEE
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA----PGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~ 554 (1132)
||+.+++.+..+..+...+.+++|+|++ ..+++++.++.|.+||..+++....+.. +...+..++|+|+|++++
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGKMSTGLALDSEG--KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp EETTTTEEEEEECCCCTTCCCCEEETTT--TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred EcCCCCceEEEecCCCCccceEEECCCC--CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence 9999999998887666678889998754 7899999999999999998877766554 445688899999999888
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASP 633 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1132)
++.. .++.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+.
T Consensus 247 ~~~~---~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~ 317 (353)
T 3vgz_A 247 ITDS---KAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPN 317 (353)
T ss_dssp EEES---SSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEE
T ss_pred EEeC---CCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCC
Confidence 7763 36789999999999888777543 24589999999777766 68999999999999988887543 578
Q ss_pred eEEEcCCCCEEEEEeCCC
Q 001176 634 RLRFNKEGSLLAVTTSDN 651 (1132)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg 651 (1132)
+++|+|+|++|+++..++
T Consensus 318 ~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 318 SLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEECTTSCEEEEEEECC
T ss_pred eEEEcCCCCEEEEEEccc
Confidence 999999999887776654
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.2e-21 Score=240.89 Aligned_cols=358 Identities=11% Similarity=0.080 Sum_probs=233.3
Q ss_pred EEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE-EEecCCC-----------------CCeEEEEeeccCCccEEEEE
Q 001176 453 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHE-----------------APVYSVCPHHKESIQFIFST 514 (1132)
Q Consensus 453 v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~h~-----------------~~v~~i~~~~~~~~~~l~s~ 514 (1132)
+..+.|+ |. .+++++.|+ | +||+.+|+.+ ..+..|. ..|.+++|+|+ +.++++
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd--~~~~~~- 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR--GLVVLF- 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT--TEEEEE-
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC--CeEEEE-
Confidence 5567888 55 466677777 8 9999999873 3333332 56999999886 344444
Q ss_pred ecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-----CceeeeeccccCC---
Q 001176 515 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-----GAIKRTYSGFRKR--- 586 (1132)
Q Consensus 515 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-----~~~~~~~~~~~~~--- 586 (1132)
.++.|++||+.+++.. .+..+...+.+++|||||++|+++. ++.|++||+.+ ++.......+...
T Consensus 99 -~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 4599999999876543 3444566788899999999999863 57899999998 7766554443321
Q ss_pred ----------ceEEEEEeCCCCEEEEEE---------------------------------cCCeEEEEECCCCeeEEEE
Q 001176 587 ----------SLGVVQFDTTRNRFLAAG---------------------------------DEFQIKFWDMDNMNMLTTV 623 (1132)
Q Consensus 587 ----------~v~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~ 623 (1132)
.+.+++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 147899999999999987 4468999999998865544
Q ss_pred eCCCCCCCcceEEEcCCCCEEEEEeCCC-----cEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCcc
Q 001176 624 DADGGLPASPRLRFNKEGSLLAVTTSDN-----GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASN 698 (1132)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 698 (1132)
....+...+.+++|+|||+.|++++.++ .|++||+.++............
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~------------------------- 306 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK------------------------- 306 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS-------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC-------------------------
Confidence 3323334688999999999999887765 8999998877221111110000
Q ss_pred ccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEe
Q 001176 699 VSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYT 778 (1132)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 778 (1132)
.....+..++|+
T Consensus 307 --------------------------------------------------------------------~~~~~~~~~~~s 318 (706)
T 2z3z_A 307 --------------------------------------------------------------------HYVEPLHPLTFL 318 (706)
T ss_dssp --------------------------------------------------------------------SCCCCCSCCEEC
T ss_pred --------------------------------------------------------------------CeECccCCceee
Confidence 000123457899
Q ss_pred c--CCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE-EEEeeCCCEEEEe
Q 001176 779 N--SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC-IALSKNDSYVMSA 855 (1132)
Q Consensus 779 ~--~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~-~~~s~dg~~la~~ 855 (1132)
| ||+.++++..++.+++|.++. . +..... +.. | ...+.. ++|+|||+.|+.+
T Consensus 319 p~~dg~~l~~~~~~g~~~l~~~~~--------------------~-~~~~~~-l~~--~-~~~v~~~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 319 PGSNNQFIWQSRRDGWNHLYLYDT--------------------T-GRLIRQ-VTK--G-EWEVTNFAGFDPKGTRLYFE 373 (706)
T ss_dssp TTCSSEEEEEECTTSSCEEEEEET--------------------T-SCEEEE-CCC--S-SSCEEEEEEECTTSSEEEEE
T ss_pred cCCCCEEEEEEccCCccEEEEEEC--------------------C-CCEEEe-cCC--C-CeEEEeeeEEcCCCCEEEEE
Confidence 9 999888888899999997641 1 111111 222 3 556766 7999999988766
Q ss_pred e--CC----eEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCC----CcEEEEEcccceeeeeeccccCCee
Q 001176 856 S--GG----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVDEVKTKLKGHQNRIT 925 (1132)
Q Consensus 856 s--dg----~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~~~~~~l~~h~~~V~ 925 (1132)
+ ++ .|..||+.+++ ...+. |...+.+++|+| ++++++....+ +.|++||+.+++ ...+. +...+.
T Consensus 374 ~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~-~~~~~~ 448 (706)
T 2z3z_A 374 STEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE-AKNPDT 448 (706)
T ss_dssp ESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECT-TSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE-CC----
T ss_pred ecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECC-CCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc-ccchhh
Confidence 5 34 67777877765 33343 677799999999 88877766443 569999998887 33333 434444
Q ss_pred EEEEcCCCCEEEEEcCCC--cEEEEEC
Q 001176 926 GLAFSPTLNALVSSGADA--QLCMWSI 950 (1132)
Q Consensus 926 ~l~~spdg~~l~s~~~D~--~i~iwd~ 950 (1132)
...+.+.. .+-..+.|| .+..|-.
T Consensus 449 ~~~~~~~~-~~~~~~~~g~~~~~~~~~ 474 (706)
T 2z3z_A 449 GYAMPEIR-TGTIMAADGQTPLYYKLT 474 (706)
T ss_dssp --CCCCEE-EEEEECTTSSSEEEEEEE
T ss_pred hcCCCCcE-EEEEEcCCCCEEEEEEEE
Confidence 44443322 233334455 5555543
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=7.6e-21 Score=236.00 Aligned_cols=237 Identities=9% Similarity=-0.027 Sum_probs=169.1
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEecCCCce-eeeeeeeccc-----------------CCEEEEEEecCCCcEEEEE
Q 001176 408 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHV-----------------GGVNDIAFAHPNKQLCIVT 469 (1132)
Q Consensus 408 V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~-----------------~~v~~v~~s~d~~~~~l~s 469 (1132)
+..+.|+ |+.+++++.++ | +||+.+++.+ .. +..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4557888 67777777888 8 9999998762 32 22332 56999999999 5 3444
Q ss_pred EcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC-----CCceEEecCCCCe----
Q 001176 470 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----LGSRVDYDAPGNW---- 540 (1132)
Q Consensus 470 ~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-----~~~~~~~~~~~~~---- 540 (1132)
+. ++.|++||+.+++... +..+...+.+++|+|++ +.|+++ .|+.|++||+.+ ++.......+...
T Consensus 98 ~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG--~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVG--DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp EE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTS--SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred EE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCC--CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 33 5999999999887654 44567788889998854 788874 789999999988 6555433333332
Q ss_pred ----------EEEEEEcCCCCEEEEEecC-----------------------------CCCCCeEEEEeCCCCceeeeec
Q 001176 541 ----------CTMMAYSADGTRLFSCGTS-----------------------------KEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 541 ----------v~~~~~s~~~~~l~~~~~~-----------------------------~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
+.+++|||||++|++++.+ ...+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 4789999999999988632 1135779999999888655443
Q ss_pred c-ccCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeeEEEEe-CC--CCCCCcceEEEcC--CCCEEEEEeCC
Q 001176 582 G-FRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVD-AD--GGLPASPRLRFNK--EGSLLAVTTSD 650 (1132)
Q Consensus 582 ~-~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~~--~~~~~v~~~~~s~--~~~~l~~~~~d 650 (1132)
. .....+..++|+|||+++++++.++ .|++||+.+++....+. .. .....+..++|+| ||++++++..|
T Consensus 253 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~ 332 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD 332 (706)
T ss_dssp CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC
Confidence 2 1223688999999999999988775 89999999984333332 11 1112347789999 99999999999
Q ss_pred CcEEEEEcC
Q 001176 651 NGIKILANS 659 (1132)
Q Consensus 651 g~i~iw~~~ 659 (1132)
+.+++|.+.
T Consensus 333 g~~~l~~~~ 341 (706)
T 2z3z_A 333 GWNHLYLYD 341 (706)
T ss_dssp SSCEEEEEE
T ss_pred CccEEEEEE
Confidence 999999875
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=5.9e-20 Score=205.93 Aligned_cols=274 Identities=14% Similarity=0.147 Sum_probs=193.2
Q ss_pred CeEEEEEcCCCcEEEEecCC-CccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC-CeEEEEE
Q 001176 356 QTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK-HIVHLYT 433 (1132)
Q Consensus 356 ~~lla~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d-g~i~iwd 433 (1132)
++++++++.|+.|++|++.. ++.... . ...|...+.+++|+|+|++|++++.+ +.|.+|+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~---~---------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLT---Q---------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEE---E---------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEe---e---------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 44666668899999999963 322110 0 12366789999999999999988886 9999999
Q ss_pred ec--CCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC---CCeEEEEecCCCCCeEEEEeeccCCc
Q 001176 434 YN--PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---AGRKQYTFEGHEAPVYSVCPHHKESI 508 (1132)
Q Consensus 434 ~~--~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~---~~~~~~~~~~h~~~v~~i~~~~~~~~ 508 (1132)
++ ++. ......+..+. .+.+++|+|+++. +++++..++.|.+||+. .++.+..+..+ ..+.+++|+|++
T Consensus 67 ~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg-- 140 (343)
T 1ri6_A 67 IAPDDGA-LTFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDN-- 140 (343)
T ss_dssp ECTTTCC-EEEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTS--
T ss_pred ecCCCCc-eeeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCC--
Confidence 98 444 22333344333 7899999999993 33445558999999994 44455555544 458888998754
Q ss_pred cEEEEEe-cCCeEEEEEcCCCCceE-----EecC-CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC--Cce--e
Q 001176 509 QFIFSTA-IDGKIKAWLYDYLGSRV-----DYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--GAI--K 577 (1132)
Q Consensus 509 ~~l~s~s-~dg~i~~wd~~~~~~~~-----~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~--~ 577 (1132)
.++++++ .++.|++||+.+..... .... ....+..++|+|+++++++++. .++.|.+|++.. ++. .
T Consensus 141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEE
T ss_pred CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEE
Confidence 6677776 89999999998733322 2222 3457889999999998877652 477899999953 433 2
Q ss_pred eeec---cc-c-CCceEEEEEeCCCCEEEEEE-cCCeEEEEECC--C--CeeEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001176 578 RTYS---GF-R-KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMD--N--MNMLTTVDADGGLPASPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 578 ~~~~---~~-~-~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 647 (1132)
..+. .. . ...+..++|+|++++++++. .++.|++||+. + .+.+..+..+. .+..++|+|+|++|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEEE
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEEe
Confidence 2222 11 1 12466799999999888655 78999999998 3 34444454432 37899999999988888
Q ss_pred e-CCCcEEEEEcC
Q 001176 648 T-SDNGIKILANS 659 (1132)
Q Consensus 648 ~-~dg~i~iw~~~ 659 (1132)
+ .++.|.+|++.
T Consensus 295 ~~~~~~v~v~~~d 307 (343)
T 1ri6_A 295 GQKSHHISVYEIV 307 (343)
T ss_dssp CTTTCEEEEEEEE
T ss_pred cCCCCeEEEEEEc
Confidence 7 58999999554
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=1.6e-20 Score=210.46 Aligned_cols=241 Identities=13% Similarity=0.141 Sum_probs=172.0
Q ss_pred CCCeeEEEEeeCCCEEEEee-C-CeEEEEECC--CCe--EEEEeeCCCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEEc-
Q 001176 837 EESAACIALSKNDSYVMSAS-G-GKVSLFNMM--TFK--VMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNV- 908 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-d-g~i~vwd~~--~~~--~~~~~~~~~~~i~~l~~sp~~~~~lasg~-~dg~v~iwd~- 908 (1132)
...+.+++|+|+|++|++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|.+||+
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEECC
Confidence 56788899999999998887 4 899999997 554 444555444 789999999 788776665 4889999999
Q ss_pred --ccceeeeeeccccCCeeEEEEcCCCCEEEEEc-CCCcEEEEECCC-cccccce--eeeCCCCCCCCCCCceeEEECCC
Q 001176 909 --RVDEVKTKLKGHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDK-WEKLKSR--FIQAPAGRQSPLVGETKVQFHND 982 (1132)
Q Consensus 909 --~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~-~D~~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~d 982 (1132)
.+++.+..+..+ ..+.+++|+|+|+++++++ .++.|.+||+.+ ++..... ......+ ..+..++|+|+
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~pd 188 (343)
T 1ri6_A 115 DGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHPN 188 (343)
T ss_dssp TTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECTT
T ss_pred CCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECCC
Confidence 445555555544 4588999999999888777 899999999987 4422111 1222122 35678999999
Q ss_pred CcEEEEE--eCCeEEEEeCCC--Cce---eec---CCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEeCC--Cc--c
Q 001176 983 QTHLLVV--HESQISVYDSKL--ECS---RSW---SPKDALPAPISSAIYSCDGLLVYAG-FCDGAIGVFDAE--TL--R 1047 (1132)
Q Consensus 983 g~~l~~~--~d~~v~vwd~~~--~~~---~~~---~~~~~h~~~i~~i~~s~dg~~las~-~~dg~i~vwd~~--~~--~ 1047 (1132)
|++++++ .++.|.+|++.. ... ... .........+..++|+|||++|+++ ..++.|.+||+. ++ +
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~ 268 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 268 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence 9988764 578999999932 221 111 1111123467789999999988754 479999999998 33 3
Q ss_pred eecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEe-CCCcEEEEecC
Q 001176 1048 FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGM-SDGAVHVVEPS 1098 (1132)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~Dg~i~vW~~~ 1098 (1132)
.+..+. .+ ..+..++|+| ++++|++++ .|+.|.+|++.
T Consensus 269 ~~~~~~-----------~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 269 KEGFQP-----------TE-TQPRGFNVDH-SGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEE-----------CS-SSCCCEEECT-TSSEEEEECTTTCEEEEEEEE
T ss_pred Eeeeec-----------CC-CccceEEECC-CCCEEEEecCCCCeEEEEEEc
Confidence 332221 22 2277899999 778777777 68999999654
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=9.9e-21 Score=207.15 Aligned_cols=257 Identities=12% Similarity=0.117 Sum_probs=190.8
Q ss_pred EEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecC-CCc
Q 001176 361 VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGE 439 (1132)
Q Consensus 361 ~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~-~~~ 439 (1132)
.++.|+.|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 44678999999999887543 345788999999999999999986 78999999998 765
Q ss_pred eeeeeeeecc-cCCEEEEEEecCCCcEEEEEEc--CCCcEEEE--ECCCCeEEEEecCCCCCeEEEEeeccCCccEEE-E
Q 001176 440 LRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCG--DDKMIKVW--DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF-S 513 (1132)
Q Consensus 440 ~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s~~--~dg~v~vw--d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~-s 513 (1132)
.. ...+| ...+.+++|+||++ +|++++ .++...|| ++.+++ ...+..+. .+..++|+|++ ..|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg--~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDG--KSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTS--SEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCC--CEEEEE
Confidence 43 23344 46789999999999 677777 33445555 545554 44555443 48889998765 6555 7
Q ss_pred EecCCeEEEEEcCCC-CceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC-CCceeeeeccccCCceEEE
Q 001176 514 TAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVV 591 (1132)
Q Consensus 514 ~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~ 591 (1132)
++.++.+++|+++.. .....+..+...+.+++|+|+|++|+.++. .++.+.+|++. .+..+..+..+.. .+..+
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~ 222 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSAY-GDWFP 222 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCSE-EEEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCCc-ccCCe
Confidence 889999999997543 344556667778999999999999887763 24567777765 4555666666554 78889
Q ss_pred EEeCCCCEEEEEEcC-----------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCC
Q 001176 592 QFDTTRNRFLAAGDE-----------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 651 (1132)
Q Consensus 592 ~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1132)
+|+|++++|++++.+ +.|++||+.+++.........+...+.+++|+|+++.|++++.+.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999999988765 569999999887644433222233788999999999998887753
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=1.9e-19 Score=200.64 Aligned_cols=197 Identities=10% Similarity=-0.001 Sum_probs=144.2
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEec-CCeEEEEEcCCCCc-eEE
Q 001176 456 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGS-RVD 533 (1132)
Q Consensus 456 v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~-~~~ 533 (1132)
..|.+++.. .+++++.++.|.+||+.+++.+..+..+...+ .++|+|++ .++++++. ++.|.+||+.++.. ...
T Consensus 3 ~~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg--~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNF-GIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDC--SNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ----CCCCE-EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSS--CEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eeEcCCCCE-EEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCC--CEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 356666664 68889999999999999999988887766667 89998755 65555554 89999999998887 556
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEE-EcCCe-EEE
Q 001176 534 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQ-IKF 611 (1132)
Q Consensus 534 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~i 611 (1132)
+..+.....+++|+|+|+++++... ..+.+.|.+||+.+++.+..+.... ....++|+|+|++++++ ..++. |.+
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~i~~ 155 (331)
T 3u4y_A 79 IQEGQSSMADVDITPDDQFAVTVTG-LNHPFNMQSYSFLKNKFISTIPIPY--DAVGIAISPNGNGLILIDRSSANTVRR 155 (331)
T ss_dssp EEECSSCCCCEEECTTSSEEEECCC-SSSSCEEEEEETTTTEEEEEEECCT--TEEEEEECTTSSCEEEEEETTTTEEEE
T ss_pred cccCCCCccceEECCCCCEEEEecC-CCCcccEEEEECCCCCeEEEEECCC--CccceEECCCCCEEEEEecCCCceEEE
Confidence 6655555555999999999994332 1122289999999999888876544 46889999999876665 45577 999
Q ss_pred EECCCCeeEEE----EeCCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCc
Q 001176 612 WDMDNMNMLTT----VDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 661 (1132)
Q Consensus 612 wd~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~ 661 (1132)
|++.....+.. .... ......++|+|+|+++++++ .++.|.+||+.++
T Consensus 156 ~~~~~~g~~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 156 FKIDADGVLFDTGQEFISG--GTRPFNITFTPDGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp EEECTTCCEEEEEEEEECS--SSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred EEECCCCcEeecCCccccC--CCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 99876443311 1111 12468999999999665554 5889999998765
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=1.4e-19 Score=202.31 Aligned_cols=299 Identities=10% Similarity=0.064 Sum_probs=204.1
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCC--eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc--
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR-- 584 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-- 584 (1132)
.++++++.++.|.+||+.+++....+..... .+..++|+|+|++++++.. .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 5799999999999999998877666654332 4788999999988776653 36789999999999887766432
Q ss_pred --CCceEEEEEeCCCCEEEEEE------------cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 585 --KRSLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 585 --~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
...+..++|+|+++++++++ .++.|++||+.+++.+..+... ..+.+++|+|+|++|+++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC---CCcceeEECCCCCEEEEe--C
Confidence 11456789999999998886 5799999999999888877653 257889999999988887 6
Q ss_pred CcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccc
Q 001176 651 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 730 (1132)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1132)
+.|.+||+.++ +....+..+.... ...+.
T Consensus 154 ~~i~~~d~~~~-~~~~~~~~~~~~~--------------------------------------------------~~~~s 182 (337)
T 1pby_B 154 RDLHVMDPEAG-TLVEDKPIQSWEA--------------------------------------------------ETYAQ 182 (337)
T ss_dssp SSEEEEETTTT-EEEEEECSTTTTT--------------------------------------------------TTBCC
T ss_pred CeEEEEECCCC-cEeeeeeccccCC--------------------------------------------------CceeC
Confidence 89999999888 4443332211000 00112
Q ss_pred ccccccccccc-Ccee--eeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCC
Q 001176 731 VDVKPRVAEDV-DKIK--SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSG 807 (1132)
Q Consensus 731 ~~~~~~~~~~~-~~v~--~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 807 (1132)
++++.+..... +... +|. .....++..... .....+.+|
T Consensus 183 ~dg~~l~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~-~~~~~v~~~----------- 224 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMATPFY--------------------------TARKDIDPADPT-AYRTGLLTM----------- 224 (337)
T ss_dssp CBCCCCCCCCTTTTEEEEEEE--------------------------EEBTTSCTTSGG-GEEEEEEEE-----------
T ss_pred CCccEEeeeccCCCceeeeee--------------------------cccccccccccc-ccccceEEE-----------
Confidence 22222111111 1000 010 000000000000 111234444
Q ss_pred ccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEe
Q 001176 808 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFH 887 (1132)
Q Consensus 808 ~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s 887 (1132)
|+.++++....+.. + ...+.+++|+|||++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+
T Consensus 225 -----------d~~~~~~~~~~~~~--~-~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s 288 (337)
T 1pby_B 225 -----------DLETGEMAMREVRI--M-DVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVS 288 (337)
T ss_dssp -----------ETTTCCEEEEEEEE--C-SSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEEC
T ss_pred -----------eCCCCCceEeecCC--C-CCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEEC
Confidence 44454443222222 3 5567899999999999988 799999999999988887743 567899999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcccceeeeeecccc
Q 001176 888 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 921 (1132)
Q Consensus 888 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 921 (1132)
| ++++|++++.++.|++||+.+++.+..+..+.
T Consensus 289 ~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 289 T-DGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp T-TSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred C-CCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 9 88888888999999999999999888876553
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=1.1e-19 Score=203.07 Aligned_cols=276 Identities=8% Similarity=0.009 Sum_probs=205.0
Q ss_pred EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCc-CeEEEEEcCCCCeEE-EEeCCCeEEEEEec
Q 001176 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-SVNRCVWGPDGLMLG-VAFSKHIVHLYTYN 435 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~la-s~~~dg~i~iwd~~ 435 (1132)
++++++.++.|.+||+.+++.+.. + ..++.. .+.+++|+|||++++ +++.++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~--~----------------~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKV--I----------------TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEE--E----------------ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEE--E----------------EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 688899999999999998876542 0 111222 478899999998764 55567899999999
Q ss_pred CCCceeeeeeeec---ccCCEEEEEEecCCCcEEEEEEc------------CCCcEEEEECCCCeEEEEecCCCCCeEEE
Q 001176 436 PTGELRQHLEIDA---HVGGVNDIAFAHPNKQLCIVTCG------------DDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500 (1132)
Q Consensus 436 ~~~~~~~~~~l~~---h~~~v~~v~~s~d~~~~~l~s~~------------~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 500 (1132)
+++.+... .+.. |...+.+++|+|||+ .+++++ .++.|.+||+.+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 88765432 1211 223678899999998 566664 579999999999998877764 4567888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCC----------------
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES---------------- 564 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~---------------- 564 (1132)
+|+|++ .+|+++ ++.|.+||+.+++....+..+.. ...+.|+|+++.++..+. .++
T Consensus 141 ~~s~dg--~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~---~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 141 AWARDG--SKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHE---SSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EECTTS--SCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCT---TTTEEEEEEEEEBTTSCTT
T ss_pred EECCCC--CEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeecc---CCCceeeeeeccccccccc
Confidence 887754 667666 78999999998876665554431 012378999987765542 111
Q ss_pred -------eEEEEeCCCCceee-eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001176 565 -------HLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 565 -------~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
.|.+||+.+++... .+..+.. .+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 286 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVN 286 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSS-CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCCC-ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEE
Confidence 47899999987652 2222332 67789999999999888 7899999999999888876542 578999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccc
Q 001176 637 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670 (1132)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (1132)
|+|+|++|++++.++.|.+||+.++ +....+..
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~-~~~~~~~~ 319 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETL-EKKGQVDL 319 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTC-CEEEEEEC
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCC-cEEEEEEc
Confidence 9999999999999999999999988 55555443
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=4.6e-19 Score=199.60 Aligned_cols=273 Identities=8% Similarity=0.024 Sum_probs=205.5
Q ss_pred CcceeeecCCCCCCceecc--------------CCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCC
Q 001176 311 QSDEVSFAGVAHTPNVYSQ--------------DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR 376 (1132)
Q Consensus 311 ~v~~~~~~~~g~~~~~~~~--------------d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~ 376 (1132)
.+..++++|+|+.+++... |..+++....+.....+.+++|+|+|+++++++..++.|.+||..++
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 121 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG 121 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC
Confidence 5667899999988776553 33456677777766678999999999977778888899999999998
Q ss_pred ccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe--CCCeEEEEEecCCCceeeeeeeecccCCEE
Q 001176 377 ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF--SKHIVHLYTYNPTGELRQHLEIDAHVGGVN 454 (1132)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~--~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~ 454 (1132)
+.+.... ......+ .......+.+++|+|||+++++++ .++.|.+||..+++... .+..+...+.
T Consensus 122 ~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~~~ 188 (353)
T 3vgz_A 122 EVKGRLV-----LDDRKRT-----EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT---AIQNTGKMST 188 (353)
T ss_dssp CEEEEEE-----SCCCCCC-----SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE---EECCCCTTCC
T ss_pred eeEEEEe-----cCCCccc-----cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE---EecCCCCccc
Confidence 7654210 0000000 000111378899999999887776 47899999999876554 3444555688
Q ss_pred EEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC----CCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEcCCCC
Q 001176 455 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG----HEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLG 529 (1132)
Q Consensus 455 ~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~ 529 (1132)
+++|+|+++ .+++++.++.|.+||+.+++.+..+.. +...+.+++|+|++ ..++.++ .++.|.+||..+++
T Consensus 189 ~~~~s~dg~--~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 189 GLALDSEGK--RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR--QRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp CCEEETTTT--EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT--TEEEEEESSSSEEEEEETTTCC
T ss_pred eEEECCCCC--EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC--CEEEEEeCCCCEEEEEECCCCc
Confidence 999999999 788888899999999999998887764 55678889998865 5555554 56999999999888
Q ss_pred ceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC
Q 001176 530 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF 607 (1132)
Q Consensus 530 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 607 (1132)
....+..... ..++|+|+|++++++.. .++.|.+||..+++.+..+.... .+..++|+|++++++++..++
T Consensus 265 ~~~~~~~~~~--~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 265 ILAKVAAPES--LAVLFNPARNEAYVTHR---QAGKVSVIDAKSYKVVKTFDTPT--HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEECSSC--CCEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEEEECCS--EEEEEEECTTSCEEEEEEECC
T ss_pred EEEEEEcCCC--ceEEECCCCCEEEEEEC---CCCeEEEEECCCCeEEEEEecCC--CCCeEEEcCCCCEEEEEEccc
Confidence 7766654432 57999999998777653 47789999999999888877543 578899999999888776553
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=1.9e-19 Score=202.13 Aligned_cols=247 Identities=11% Similarity=0.173 Sum_probs=170.0
Q ss_pred CCCeeEEEEeeCCCEEEEee---CCeEEEEECCCCe--EEEEeeCCCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEEcc-
Q 001176 837 EESAACIALSKNDSYVMSAS---GGKVSLFNMMTFK--VMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVR- 909 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s---dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~sp~~~~~lasg~-~dg~v~iwd~~- 909 (1132)
...+..++|+|||+++++.. ++.|++||+.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~ 117 (347)
T 3hfq_A 39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAA 117 (347)
T ss_dssp CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECT
T ss_pred cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCC
Confidence 44567899999999444433 3789999998765 4445555777899999999 888888877 77999999996
Q ss_pred cc--eeeeeecc---------ccCCeeEEEEcCCCCEEEEEcCCCcEEEEECC-CcccccceeeeCCCCCCCCCCCceeE
Q 001176 910 VD--EVKTKLKG---------HQNRITGLAFSPTLNALVSSGADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETKV 977 (1132)
Q Consensus 910 ~~--~~~~~l~~---------h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~ 977 (1132)
++ +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..+
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~~ 192 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRHL 192 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEEE
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCceE
Confidence 33 23333321 12348889999999977777788999999998 443221111122222 346789
Q ss_pred EECCCCcEEEEE--eCCeEEEEeCC--CCcee---ecCCCC---CCCCCeEEEEEccCCCEEE-EEecCCcEEEEeCCCc
Q 001176 978 QFHNDQTHLLVV--HESQISVYDSK--LECSR---SWSPKD---ALPAPISSAIYSCDGLLVY-AGFCDGAIGVFDAETL 1046 (1132)
Q Consensus 978 ~~s~dg~~l~~~--~d~~v~vwd~~--~~~~~---~~~~~~---~h~~~i~~i~~s~dg~~la-s~~~dg~i~vwd~~~~ 1046 (1132)
+|+|||++++++ .++.|.+|++. ..... ...... .....+..++|+|||++|+ +...++.|.+|++...
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 999999987774 46889999983 22221 111111 0114588999999999874 5556899999999732
Q ss_pred ---ceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCC-CcEEEEec--CCCc
Q 001176 1047 ---RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEP--SDAE 1101 (1132)
Q Consensus 1047 ---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~D-g~i~vW~~--~~~~ 1101 (1132)
+.+..+ ..+...+..++|+| |+++|++++.+ +.|.+|++ .+++
T Consensus 273 g~~~~~~~~-----------~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 273 GHLTLIQQI-----------STEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp GCEEEEEEE-----------ECSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CcEEEeEEE-----------ecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 222222 23345678999999 78888777755 89999955 4555
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=7.5e-20 Score=221.10 Aligned_cols=272 Identities=14% Similarity=0.100 Sum_probs=198.3
Q ss_pred CCCeeEEEEccCCCeEEEEEc-CCCcEEEEecCCCccccccceeeeecccccccccccccCCCC-cCeEEEEEcCCCCeE
Q 001176 343 GSNVMSMDFHPQQQTILLVGT-NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLML 420 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~l 420 (1132)
..+|++++|||||++ ||.++ .||+++||++.+++... +..|. ..|.+++|||| +.+
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 347999999999995 55555 49999999987665432 33444 68999999999 777
Q ss_pred EEEeC---CCeEEEEEecC--CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC
Q 001176 421 GVAFS---KHIVHLYTYNP--TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 421 as~~~---dg~i~iwd~~~--~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
++++. +....+|.++. ..... .+..+ ..+...+|+|||+.+++++++.++ +.+||+.+++.......+.
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG- 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS-
T ss_pred EEeccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC-
Confidence 77765 45567776654 22222 12222 234567999999875666666555 4599999988655444333
Q ss_pred CeEEEEeeccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeC
Q 001176 496 PVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
.+++|+|++ ++|++++.+ +.|++||+.+++.. .+..+...+..++|||||++|+++.. ++...|++||+
T Consensus 153 --~~~~~spDG--~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSDIRG--DLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEEEET--TEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEECCCC--CEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 788888854 899988877 78999999877654 56777788999999999999995532 33348999999
Q ss_pred CCCceeeeeccccCCceEEEE--------EeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCE
Q 001176 572 SEGAIKRTYSGFRKRSLGVVQ--------FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 643 (1132)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 643 (1132)
.+++.. .+.++.. .+..++ |+|||..+++++.++.+++|++ ++.... . ...+.+++|+ ++++
T Consensus 226 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg~~ 295 (582)
T 3o4h_A 226 RDGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RGKL 295 (582)
T ss_dssp TTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TTEE
T ss_pred CCCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CCEE
Confidence 998877 6665544 555566 9999988888999999999999 655441 1 2367899999 9999
Q ss_pred EEEEeCCCc---EEEEEcC
Q 001176 644 LAVTTSDNG---IKILANS 659 (1132)
Q Consensus 644 l~~~~~dg~---i~iw~~~ 659 (1132)
+++++.+.+ +.+|+..
T Consensus 296 l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 296 VTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEETTEEEEEEEETTC
T ss_pred EEEEcCCCCCCeEEEEcCC
Confidence 988887754 5555543
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=2e-19 Score=196.74 Aligned_cols=253 Identities=9% Similarity=0.042 Sum_probs=185.7
Q ss_pred ceeccCCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCC-CccccccceeeeecccccccccccccCC
Q 001176 325 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 325 ~~~~~d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
.++.++...++......|...|.+++|+|||+ +|++++ ++.|++||+.+ ++.... ..+
T Consensus 23 ~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~ 81 (297)
T 2ojh_A 23 SIEIFNIRTRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------DTG 81 (297)
T ss_dssp EEEEEETTTTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------CCT
T ss_pred eEEEEeCCCCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------ccc
Confidence 34445555566666666899999999999999 466665 78999999998 765431 223
Q ss_pred C-CcCeEEEEEcCCCCeEEEEe--CCCeEEEEEe--cCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEE
Q 001176 404 A-AISVNRCVWGPDGLMLGVAF--SKHIVHLYTY--NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478 (1132)
Q Consensus 404 h-~~~V~~v~~spdg~~las~~--~dg~i~iwd~--~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~v 478 (1132)
| ...|.+++|+|||++|++++ .++...||.+ .++. .. .+..+ ..+.+++|+||++. ++++++.|+.++|
T Consensus 82 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l 155 (297)
T 2ojh_A 82 FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDI 155 (297)
T ss_dssp TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEE
T ss_pred cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCceEE
Confidence 4 46889999999999999998 3345566655 4443 22 23333 35899999999994 3347888999999
Q ss_pred EECC-CCeEEEEecCCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEcC-CCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001176 479 WDVV-AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 479 wd~~-~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
|++. .+.....+..|...+.+++|+|++ ..|+.++ .++.+++|+++ .......+..+...+.+++|+|+|++|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 156 YSMDIDSGVETRLTHGEGRNDGPDYSPDG--RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp EEEETTTCCEEECCCSSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEE
T ss_pred EEEECCCCcceEcccCCCccccceECCCC--CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEE
Confidence 9863 233446677788899999998754 6666555 69999999987 45566677777778999999999999998
Q ss_pred EecCCC-------CCCeEEEEeCCCCceee--eeccccCCceEEEEEeCCCCEEEEEEcCC
Q 001176 556 CGTSKE-------GESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEF 607 (1132)
Q Consensus 556 ~~~~~~-------~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 607 (1132)
++.+.. .+..|++||+.+++... .+.++.. .+..++|+|++++|++++.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 234 VSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred EEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 875321 23679999999886543 3335544 688899999999999887553
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=1.9e-19 Score=223.72 Aligned_cols=285 Identities=7% Similarity=0.023 Sum_probs=190.4
Q ss_pred eEEEEEecCCceEEeecc---------cceeEEEeeccccCCCCCccccccccccccCCCcCccc-ccCCCCCCCCCCee
Q 001176 772 VVRLIYTNSGLSLLALAS---------NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT-NDINESKPTEESAA 841 (1132)
Q Consensus 772 i~~~~~s~~g~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~h~~~~v~ 841 (1132)
+.+++|||||++|+.++. ++.+++||+. +++... ..+ ...+.
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~----------------------~g~~~~~~~l------~~~~~ 113 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS----------------------NGEFVRGNEL------PRPIQ 113 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT----------------------TTEECCSSCC------CSSBC
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC----------------------CCccccceec------Ccccc
Confidence 678999999999988876 6788888754 333210 001 23578
Q ss_pred EEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEe-eCCCCCe-----------------EEEEEeCCCCCeEEEEeCCC--
Q 001176 842 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF-MSPPPAA-----------------TFLAFHPQDNNIIAIGMEDS-- 901 (1132)
Q Consensus 842 ~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~-~~~~~~i-----------------~~l~~sp~~~~~lasg~~dg-- 901 (1132)
.++|||||+.||.+.++.|++||+.+++..... .++...| .+++||| ||+.||+++.|.
T Consensus 114 ~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~ 192 (719)
T 1z68_A 114 YLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTD 192 (719)
T ss_dssp CEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTT
T ss_pred cceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCC
Confidence 899999999999999999999999988765433 2222222 5899999 899999987652
Q ss_pred --------------------------------cEEEEEcccceee--------eeeccccCCeeEEEEcCCCCEEEEEcC
Q 001176 902 --------------------------------SVQIYNVRVDEVK--------TKLKGHQNRITGLAFSPTLNALVSSGA 941 (1132)
Q Consensus 902 --------------------------------~v~iwd~~~~~~~--------~~l~~h~~~V~~l~~spdg~~l~s~~~ 941 (1132)
.|++||+.+++.. ..+.+|...+.+++||||++++++...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~ 272 (719)
T 1z68_A 193 IPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK 272 (719)
T ss_dssp SCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE
T ss_pred CceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec
Confidence 7889999988653 224568888999999999887777443
Q ss_pred C----CcEEEEE----CCCcccccceeeeCCCCCCCCCCCce-----eEEECCCCcEEEE--E-eCC--eEEEEeCCCCc
Q 001176 942 D----AQLCMWS----IDKWEKLKSRFIQAPAGRQSPLVGET-----KVQFHNDQTHLLV--V-HES--QISVYDSKLEC 1003 (1132)
Q Consensus 942 D----~~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~s~dg~~l~~--~-~d~--~v~vwd~~~~~ 1003 (1132)
. ..|.+|| +.+++...... ....++. ..+. .++|+|||+.++. + .++ .|.+||+.+..
T Consensus 273 ~~~~~~~l~~~d~~~~~~~g~~~~~~~-~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 273 RVQNVSVLSICDFREDWQTWDCPKTQE-HIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp SSTTEEEEEEEEECSSSSSEECCGGGE-EEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred cccCeEEEEEEcccCCCCCCceEEEEe-cccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 2 2488899 77765332110 0001222 2233 7899999997665 3 233 57778885444
Q ss_pred eeecCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEeCCC--cce-ecccCCCccccccccCCCCCCcEEEEe
Q 001176 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAET--LRF-RCRIGPSAYIPTYAVSSNTAHPLVIAP 1075 (1132)
Q Consensus 1004 ~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d-----g~i~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1075 (1132)
...+.. +...+..+.++ |++.|+..+.+ +.+++|.+.. +.. ...+... ..+|...+..+.|
T Consensus 349 ~~~lt~---~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~-------~~~~~~~~~~~~~ 417 (719)
T 1z68_A 349 AIQITS---GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH-------LRKERCQYYTASF 417 (719)
T ss_dssp CEECSC---SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT-------TTTTTBCBEEEEE
T ss_pred eEeccc---CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc-------cCCCCCceEEEEE
Confidence 444432 25568888888 88887776655 7888988764 421 1222100 1135556778999
Q ss_pred CCCCCCeEE-EEeCC--CcEEEEecCCCc
Q 001176 1076 HPSEPNQIA-LGMSD--GAVHVVEPSDAE 1101 (1132)
Q Consensus 1076 ~p~~~~~l~-s~~~D--g~i~vW~~~~~~ 1101 (1132)
+| ++++++ +++.+ ..+.+||+.+++
T Consensus 418 s~-dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 418 SD-YAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CG-GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CC-CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 99 555554 45444 578899998876
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=2.5e-18 Score=197.49 Aligned_cols=314 Identities=12% Similarity=0.112 Sum_probs=197.2
Q ss_pred cceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC
Q 001176 770 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 849 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg 849 (1132)
..+..+++++++..+++++.++ +++|+........... .....+...... ..+ .+ ...|.+++|+|+|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~---~~-~~~v~~l~~spdg 104 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG---DDPNKIVDKVQG----LLV---PM-KFPIHHLALSCDN 104 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT---CCTTCEEECCCC----EEE---CC-SSCEEEEEECTTS
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc---cCcccccccCcc----ccc---cC-CCcccEEEEcCCC
Confidence 4578899999999999988887 8888764311100000 000000000000 001 13 6679999999999
Q ss_pred CEEE----Eee-CCeEEEEECCCC--------e---EEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccccee
Q 001176 850 SYVM----SAS-GGKVSLFNMMTF--------K---VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 913 (1132)
Q Consensus 850 ~~la----~~s-dg~i~vwd~~~~--------~---~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 913 (1132)
++|+ +++ |++|++||+.++ + .+..+.+|...|++++|+|+++.+||+++.||+|++||+.++..
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999 676 899999998764 2 24566779999999999994489999999999999999999877
Q ss_pred eeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCC-CCCCCceeEEECCCCcEEEEE--e
Q 001176 914 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ-SPLVGETKVQFHNDQTHLLVV--H 990 (1132)
Q Consensus 914 ~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~--~ 990 (1132)
+....+|...|++++|+|+|++|++++.||+|++||+. ++... .+....... .....+.+++|++++.++++. .
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~--~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK--VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE--EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc--cccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 77777899999999999999999999999999999998 33211 111111100 001368899999999988773 3
Q ss_pred CC------eEEEEeCCCCc---e---eecCCC----CCCCCCeEEEEEccCCCEEEEEec-CCcEEEEeCCCcc--e-ec
Q 001176 991 ES------QISVYDSKLEC---S---RSWSPK----DALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLR--F-RC 1050 (1132)
Q Consensus 991 d~------~v~vwd~~~~~---~---~~~~~~----~~h~~~i~~i~~s~dg~~las~~~-dg~i~vwd~~~~~--~-~~ 1050 (1132)
+| .+++|++.... . ..+... .+...+-..+.+-+|.+++++++. .+.|.|....... . ..
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 32 38999993221 1 111100 011223333344478777766554 3445555533211 0 00
Q ss_pred ccCC--CccccccccCCCCCCcEEEEeC--CCC------------CCeEEEEeCCCcEEEEecCC
Q 001176 1051 RIGP--SAYIPTYAVSSNTAHPLVIAPH--PSE------------PNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1051 ~~~~--~~~~~~~~~~~~~~~v~~~~~~--p~~------------~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
.+.. ...+|... ......++.+++. ..+ --.|..-+.||.+..|.+-.
T Consensus 342 ~~~d~~ra~lP~~~-~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 342 LLEDSSRAELPVTD-KSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EECGGGCCBCCBCT-TSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred eccccccccccCCC-CCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 1100 11233321 1233444544442 111 13677888999999999976
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=9.1e-20 Score=226.69 Aligned_cols=318 Identities=8% Similarity=0.044 Sum_probs=215.8
Q ss_pred ceeeecCCCCCCce------eccCCcccceEEeecCCC----CeeEEEEccCCCeEEEEEcC---------CCcEEEEec
Q 001176 313 DEVSFAGVAHTPNV------YSQDDLTKTVVRTLNQGS----NVMSMDFHPQQQTILLVGTN---------VGDISLWEV 373 (1132)
Q Consensus 313 ~~~~~~~~g~~~~~------~~~d~~~~~~~~~l~h~~----~V~~~~~spdg~~lla~g~~---------dg~v~iwd~ 373 (1132)
.+++|+|||+.++. +.++...++....+.+.. .|.+++|||||++ |++++. ++.|++||+
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~-la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQF-VYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSE-EEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCe-EEEEecCceeEEeecceEEEEEEC
Confidence 35677888754332 233444566666666332 4999999999995 665554 689999999
Q ss_pred CCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCE
Q 001176 374 GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGV 453 (1132)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v 453 (1132)
.+++.+... .....+.+++|||||++||++. ++.|++|++.+++.... ...++...|
T Consensus 98 ~~g~~~~~~--------------------~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l--~~~~~~~~v 154 (719)
T 1z68_A 98 SNGEFVRGN--------------------ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI--TFNGRENKI 154 (719)
T ss_dssp TTTEECCSS--------------------CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--CCCCBTTTE
T ss_pred CCCccccce--------------------ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE--ecCCCcCCe
Confidence 998763210 0124688999999999999985 78999999998775432 112333322
Q ss_pred -----------------EEEEEecCCCcEEEEEEcCCC----------------------------------cEEEEECC
Q 001176 454 -----------------NDIAFAHPNKQLCIVTCGDDK----------------------------------MIKVWDVV 482 (1132)
Q Consensus 454 -----------------~~v~~s~d~~~~~l~s~~~dg----------------------------------~v~vwd~~ 482 (1132)
.+++|||||+ .|++++.|. .|++||+.
T Consensus 155 ~~g~~~~v~~ee~~~~~~~~~wSPDG~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~ 232 (719)
T 1z68_A 155 FNGIPDWVYEEEMLATKYALWWSPNGK--FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT 232 (719)
T ss_dssp EESSCCHHHHHHTTCSSCCEEECTTSS--EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS
T ss_pred EcccccceeeeecccCcccEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC
Confidence 4899999999 677776542 78999999
Q ss_pred CCeEE--------EEecCCCCCeEEEEeeccCCccEEEEEecC----CeEEEEE----cCCCCceEEe----cCCCCeEE
Q 001176 483 AGRKQ--------YTFEGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWL----YDYLGSRVDY----DAPGNWCT 542 (1132)
Q Consensus 483 ~~~~~--------~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d----g~i~~wd----~~~~~~~~~~----~~~~~~v~ 542 (1132)
+++.. ..+.+|...+.+++|+|+ +.++++.... ..|.+|| ..+++..... ..+...+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD--~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~ 310 (719)
T 1z68_A 233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVTD--ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAG 310 (719)
T ss_dssp CHHHHCCEECCCCHHHHTSCEEEEEEEESSS--SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSS
T ss_pred CCCccceeEccCCccCCCCcceEEEeEEeCC--CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEc
Confidence 88753 123468888999999886 4677764433 2488888 6665544433 34555565
Q ss_pred -----EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC-----CeEEEE
Q 001176 543 -----MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFW 612 (1132)
Q Consensus 543 -----~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw 612 (1132)
.++|+|||+.++....+.++...|++||+.+++ ...+..+.. .+..+.+. +++.++..+.+ +..++|
T Consensus 311 ~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~-~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 311 GFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKW-EAINIFRV-TQDSLFYSSNEFEEYPGRRNIY 387 (719)
T ss_dssp SSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSS-CEEEEEEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred cccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCce-EEEEEEEE-eCCEEEEEEecCCCCCceEEEE
Confidence 789999999877644444566789999988776 344544333 56677777 88888877654 778888
Q ss_pred ECCC--Ce-eEEEEeCC--CCCCCcceEEEcCCCCEEEEEe-CC--CcEEEEEcCCc
Q 001176 613 DMDN--MN-MLTTVDAD--GGLPASPRLRFNKEGSLLAVTT-SD--NGIKILANSDG 661 (1132)
Q Consensus 613 d~~~--~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~-~d--g~i~iw~~~~~ 661 (1132)
.+.. +. ....+... .+...+..+.|+|+++.++... .. ..+.+|++.++
T Consensus 388 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 388 RISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp EEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred EEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 7653 32 12333321 1223567899999998777543 32 46889998877
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=2.3e-18 Score=193.16 Aligned_cols=274 Identities=13% Similarity=0.111 Sum_probs=190.4
Q ss_pred CCCCceeccCCcccce--EEeecCCCCeeEEEEccCCCeEEEEEcC--CCcEEEEecCCCccccccceeeeecccccccc
Q 001176 321 AHTPNVYSQDDLTKTV--VRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPL 396 (1132)
Q Consensus 321 g~~~~~~~~d~~~~~~--~~~l~h~~~V~~~~~spdg~~lla~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1132)
++.+.++.+|..+++. +....+...+..++|||||+ +++++.. ++.|.+|++.+++.....
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~-------------- 79 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN-------------- 79 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE--------------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee--------------
Confidence 4446667776655544 33445778899999999998 6666543 789999999776532110
Q ss_pred cccccCCCCcCeEEEEEcCCCCeEEEEe-CCCeEEEEEecCCCceeeeeeeec---------ccCCEEEEEEecCCCcEE
Q 001176 397 QNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQHLEIDA---------HVGGVNDIAFAHPNKQLC 466 (1132)
Q Consensus 397 ~~~~~~~h~~~V~~v~~spdg~~las~~-~dg~i~iwd~~~~~~~~~~~~l~~---------h~~~v~~v~~s~d~~~~~ 466 (1132)
.+..+...+..++|+|||++|++++ .++.|.+|++...........+.. +...+.+++|+|||+ +
T Consensus 80 ---~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l 154 (347)
T 3hfq_A 80 ---TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--L 154 (347)
T ss_dssp ---EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--E
T ss_pred ---eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--E
Confidence 0223667888999999999998887 689999999974433333323221 122488999999999 7
Q ss_pred EEEEcCCCcEEEEECC-CCeEE--EEecCC-CCCeEEEEeeccCCccEE-EEEecCCeEEEEEcCC--CCce--EEecCC
Q 001176 467 IVTCGDDKMIKVWDVV-AGRKQ--YTFEGH-EAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDY--LGSR--VDYDAP 537 (1132)
Q Consensus 467 l~s~~~dg~v~vwd~~-~~~~~--~~~~~h-~~~v~~i~~~~~~~~~~l-~s~s~dg~i~~wd~~~--~~~~--~~~~~~ 537 (1132)
+++...++.|.+||+. +++.. ..+..+ ...+..++|+|++ +++ ++...++.|.+|+++. +... ..+...
T Consensus 155 ~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 232 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG--QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI 232 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred EEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec
Confidence 8888889999999998 55433 222222 3367789998754 644 5566789999999885 2211 122221
Q ss_pred C------CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-C--ceeeeeccccCCceEEEEEeCCCCEEEEEEc-CC
Q 001176 538 G------NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-G--AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF 607 (1132)
Q Consensus 538 ~------~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg 607 (1132)
. ..+..++|+|||++|+++.. .++.|.+|++.. + +.+..+..+.. .+..++|+|+|++|++++. ++
T Consensus 233 ~~~~~~~~~~~~i~~spdG~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 233 PADYTAHNGAAAIRLSHDGHFLYVSNR---GYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp CTTCCSCCEEEEEEECTTSCEEEEEEE---TTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTT
T ss_pred CCCCCCCCcceeEEECCCCCEEEEEeC---CCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCC
Confidence 1 46889999999998866543 367899999873 2 44455554433 5788999999999988875 48
Q ss_pred eEEEE--ECCCCeeE
Q 001176 608 QIKFW--DMDNMNML 620 (1132)
Q Consensus 608 ~i~iw--d~~~~~~~ 620 (1132)
.|.+| |..+++..
T Consensus 309 ~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 309 NATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEECTTTCCEE
T ss_pred cEEEEEEeCCCCeEE
Confidence 99999 55566654
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=8.3e-19 Score=201.51 Aligned_cols=260 Identities=13% Similarity=0.097 Sum_probs=178.1
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE-
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG- 421 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la- 421 (1132)
...++.+++++++. ++++|+.|+ ++||+........... .+... ...........+.+.|.+++|+|+|++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPNK-IVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTTC-EEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCccc-ccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34689999999998 677888777 8998864321100000 00000 00000001123677899999999999999
Q ss_pred ---EEeCCCeEEEEEecCC--------CceeeeeeeecccCCEEEEEEecC-CCcEEEEEEcCCCcEEEEECCCCeEEEE
Q 001176 422 ---VAFSKHIVHLYTYNPT--------GELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 422 ---s~~~dg~i~iwd~~~~--------~~~~~~~~l~~h~~~v~~v~~s~d-~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 489 (1132)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||++++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999765 223334456789999999999998 56 899999999999999999988777
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCeEEEEEEcCCCCEEEEEecCC--
Q 001176 490 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSK-- 560 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~-- 560 (1132)
..+|...|.+++|+|+ |.+|++|+.||.|++||++ +.....+..+ ...+.+++|++++.++++.+...
T Consensus 188 ~~~~~~~v~~v~wspd--g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPK--GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECTT--SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcCC--CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 7789999999999886 4899999999999999998 4444444333 23899999999988876654321
Q ss_pred -CCCCeEEEEeCCCCc-----eeeeec-------cccCCceEEEEEeCCCCEEEEEE-cCCeEEEEEC
Q 001176 561 -EGESHLVEWNESEGA-----IKRTYS-------GFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDM 614 (1132)
Q Consensus 561 -~~~~~i~~wd~~~~~-----~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~ 614 (1132)
+....+++|++...+ ....+. +... ....+..-++.+++++++ ..+.|.+...
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEe
Confidence 112348999997642 111211 1121 222334447777777765 4444666554
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=6.8e-19 Score=212.70 Aligned_cols=237 Identities=15% Similarity=0.130 Sum_probs=176.9
Q ss_pred CCcCeEEEEEcCCCCeEEEEeC-CCeEEEEEecCCCceeeeeeeeccc-CCEEEEEEecCCCcEEEEEEcC---CCcEEE
Q 001176 404 AAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGD---DKMIKV 478 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~-dg~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~---dg~v~v 478 (1132)
+..+|.+++|+|||++||+++. ||++.||++++++.. .+..|. ..+..++|+|| + ++++++. +....+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEE
Confidence 3557999999999999999887 999999999766433 244555 68999999999 5 6777664 455566
Q ss_pred EECCC---CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001176 479 WDVVA---GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 555 (1132)
Q Consensus 479 wd~~~---~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1132)
|.+.. +... .+.... .+...+|+|++++..+++++.++.. +||+.+++.......+. .+++|||||++|++
T Consensus 93 ~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~ 166 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAG 166 (582)
T ss_dssp EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence 54432 3332 443332 3446688888775566666555554 99998876554443333 78999999999998
Q ss_pred EecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeeEEEEeCCCCCCCcc
Q 001176 556 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGLPASP 633 (1132)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1132)
++.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|++++.++ .|++||+.+++.. .+..+. ..+.
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~~ 241 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KDFS 241 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SHHH
T ss_pred EEEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cChh
Confidence 7764333467999999988764 5555554 789999999999999888888 8999999998877 554443 3566
Q ss_pred eEE--------EcCCCCEEEEEeCCCcEEEEEc
Q 001176 634 RLR--------FNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 634 ~~~--------~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
.++ |+|||.++++++.++.+++|++
T Consensus 242 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 242 SYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 677 9999999999999999999998
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=4.5e-18 Score=194.28 Aligned_cols=301 Identities=10% Similarity=-0.001 Sum_probs=198.8
Q ss_pred CcccceEEeec-CCCCeeE-----EEEccCCCeEEEEEcCCC--cEEEEecCCCccccccceeeeecccccccccccccC
Q 001176 331 DLTKTVVRTLN-QGSNVMS-----MDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 402 (1132)
Q Consensus 331 ~~~~~~~~~l~-h~~~V~~-----~~~spdg~~lla~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1132)
..++..+..+. |...... .+|||||+++++++..++ .|.+||+.+++.... ..
T Consensus 17 ~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t~ 77 (388)
T 3pe7_A 17 ASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------TE 77 (388)
T ss_dssp TTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------CC
T ss_pred CCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------ee
Confidence 34455566666 5555555 899999996555554467 488889888775432 34
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEE--EecCCCcEEEEE-----------
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA--FAHPNKQLCIVT----------- 469 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~--~s~d~~~~~l~s----------- 469 (1132)
++...+..++|||||+.|+.++.++.|++||+.+++... .+..+...+.... ++||++ +++.
T Consensus 78 ~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~ 152 (388)
T 3pe7_A 78 GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPL 152 (388)
T ss_dssp SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCC
T ss_pred CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccc
Confidence 455566678899999999999999999999999987543 2334444454444 489998 5553
Q ss_pred -----------EcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeec-cCCccEEEEEecC------CeEEEEEcCCCCce
Q 001176 470 -----------CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAID------GKIKAWLYDYLGSR 531 (1132)
Q Consensus 470 -----------~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~~~l~s~s~d------g~i~~wd~~~~~~~ 531 (1132)
.+.+..|.+||+.+++.. .+..+...+..++|+| ++ ..|+.++.+ ..|.++|.......
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (388)
T 3pe7_A 153 TDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDD--STVAFCHEGPHDLVDARMWLINEDGTNMR 229 (388)
T ss_dssp CSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEE--EEEEEEECSCTTTSSCSEEEEETTSCCCE
T ss_pred cccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCC--CEEEEEEecCCCCCcceEEEEeCCCCceE
Confidence 224578999999998754 4445677889999988 54 677766653 36777777655443
Q ss_pred EEecCCC-CeEEEEEEcCCCCEEEEEecCC-CCCCeEEEEeCCCCceee--eeccccC--CceEEEEEeCCCCEEEEE--
Q 001176 532 VDYDAPG-NWCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEGAIKR--TYSGFRK--RSLGVVQFDTTRNRFLAA-- 603 (1132)
Q Consensus 532 ~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~~--~~~~~~~--~~v~~~~~~~~~~~l~~~-- 603 (1132)
....... ..+..++|+|||+.|+..+... ..+..|++||+.+++... .+.++.. .......|+|+|+.++..
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence 3323222 3678899999999887655421 112359999999887433 3333100 001123699999888754
Q ss_pred -------EcCCeEEEEECCCCeeEEEEeCCCCC--------CCcceEEEcCCCCEEEEEeC-CCcEEEEEc
Q 001176 604 -------GDEFQIKFWDMDNMNMLTTVDADGGL--------PASPRLRFNKEGSLLAVTTS-DNGIKILAN 658 (1132)
Q Consensus 604 -------~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~ 658 (1132)
..+..|++||+.+++........... ..+.+++|+|||+.|+..+. +|...+|.+
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 45678999999988764433332210 03678899999998887664 666666654
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=1.1e-17 Score=207.58 Aligned_cols=379 Identities=10% Similarity=0.027 Sum_probs=239.3
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCc----eEEEEEeCCCCEEEEEEcC---------C
Q 001176 541 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDE---------F 607 (1132)
Q Consensus 541 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d---------g 607 (1132)
..+++|+|||++++++ ++.|++||+.+++....+.++.... ...++|||||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999888875 5679999999999887777765321 2347899999999998865 5
Q ss_pred eEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCc
Q 001176 608 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 687 (1132)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1132)
.+++||+.+++... +..+ ...+...+|||||+.||.+. ++.|++|++.++....-+..++...+.
T Consensus 93 ~~~~~d~~~~~~~~-l~~~--~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~----------- 157 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIY----------- 157 (740)
T ss_dssp EEEEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEE-----------
T ss_pred EEEEEECCCCcEEE-cccC--CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcccee-----------
Confidence 67799999988653 3332 33689999999999999885 679999999877321111111110000
Q ss_pred ccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcc
Q 001176 688 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 767 (1132)
Q Consensus 688 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~ 767 (1132)
.+... .+|.-.
T Consensus 158 --------------------------------------------------~g~~~--~v~~ee----------------- 168 (740)
T 4a5s_A 158 --------------------------------------------------NGITD--WVYEEE----------------- 168 (740)
T ss_dssp --------------------------------------------------ESBCC--HHHHHH-----------------
T ss_pred --------------------------------------------------cCccc--ccccch-----------------
Confidence 00000 000000
Q ss_pred cccceEEEEEecCCceEEeeccc-ceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEe
Q 001176 768 AASKVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 846 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s 846 (1132)
--.....++|||||+.|+....| +.+.+|++..... .. . + ...+..+.+.
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-------------------~~-------~--~-~~~~~~~~yp 219 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-------------------ES-------L--Q-YPKTVRVPYP 219 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS-------------------TT-------C--S-SCEEEEEECC
T ss_pred hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC-------------------CC-------C--C-CCcceeecCC
Confidence 00223568999999999988766 4488887642110 00 0 2 3456677777
Q ss_pred eCCCEEEEeeCCeEEEEECCC---Ce--EEEEee------CCCCCeEEEEEeCCCCCeEEEEeC----CCcEEEEEcccc
Q 001176 847 KNDSYVMSASGGKVSLFNMMT---FK--VMTMFM------SPPPAATFLAFHPQDNNIIAIGME----DSSVQIYNVRVD 911 (1132)
Q Consensus 847 ~dg~~la~~sdg~i~vwd~~~---~~--~~~~~~------~~~~~i~~l~~sp~~~~~lasg~~----dg~v~iwd~~~~ 911 (1132)
+.|..- ...+|++||+.+ ++ ....+. +|...+..++|+| ++++++.... +..|++||+.++
T Consensus 220 ~~G~~~---~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 220 KAGAVN---PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDES 295 (740)
T ss_dssp BTTSCC---CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred CCcCcC---CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCC
Confidence 776431 124799999998 73 223333 3777799999999 8887665533 347999999988
Q ss_pred e----eee--ee--ccccCCee-----EEEEcCCCCEEE-EEcC-C--CcEEEEECCCcccccceeeeCCCCCCCCCCCc
Q 001176 912 E----VKT--KL--KGHQNRIT-----GLAFSPTLNALV-SSGA-D--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE 974 (1132)
Q Consensus 912 ~----~~~--~l--~~h~~~V~-----~l~~spdg~~l~-s~~~-D--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 974 (1132)
+ +.. .+ .+|...|. .++|+|||+.++ ..+. + ..|.+|++.+++. .....+. ..+
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~----~~v 366 (740)
T 4a5s_A 296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGT----WEV 366 (740)
T ss_dssp TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSS----SCE
T ss_pred ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCC----EEE
Confidence 7 322 22 45665554 789999999877 6653 3 4588888887652 2222222 234
Q ss_pred eeEEECCCCcEEEE-EeC-----C--eEEEEeCCCCcee-ecCCC-CCCCCCeEEEEEccCCCEEEEEecC---CcEEEE
Q 001176 975 TKVQFHNDQTHLLV-VHE-----S--QISVYDSKLECSR-SWSPK-DALPAPISSAIYSCDGLLVYAGFCD---GAIGVF 1041 (1132)
Q Consensus 975 ~~~~~s~dg~~l~~-~~d-----~--~v~vwd~~~~~~~-~~~~~-~~h~~~i~~i~~s~dg~~las~~~d---g~i~vw 1041 (1132)
..+. ++|++.++. +.. + .|...++.+.... .+... .+.......+.|||||++++..... ..+.++
T Consensus 367 ~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~ 445 (740)
T 4a5s_A 367 IGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLH 445 (740)
T ss_dssp EEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEE
T ss_pred EEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEE
Confidence 4443 244776666 433 2 3444454443332 22211 1124578899999999987765433 368889
Q ss_pred eCCCcceeccc
Q 001176 1042 DAETLRFRCRI 1052 (1132)
Q Consensus 1042 d~~~~~~~~~~ 1052 (1132)
+..+++.+..+
T Consensus 446 ~~~~~~~~~~l 456 (740)
T 4a5s_A 446 SSVNDKGLRVL 456 (740)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCcEEEEe
Confidence 98887665443
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=8.4e-18 Score=208.63 Aligned_cols=275 Identities=11% Similarity=0.097 Sum_probs=185.3
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCC-----cCeEEEEEcCCCC
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-----ISVNRCVWGPDGL 418 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~spdg~ 418 (1132)
....+++|+|||+ +++++ |++|++||+.+++.... +.+|. .....++|||||+
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence 3567899999997 67776 89999999999875431 23333 2334589999999
Q ss_pred eEEEEeCC---------CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE
Q 001176 419 MLGVAFSK---------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 419 ~las~~~d---------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 489 (1132)
+|++++.+ +.+.+||+.+++.. .+..|.+.+..++|||||+ .|+.+. |+.|++||+.+++..+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEE
Confidence 99998876 56779999998643 3567788999999999999 567664 78999999988875432
Q ss_pred -ecCCCCCe-----------------EEEEeeccCCccEEEEEecCCe-EEEEEcCCCCceEEecCCCCeEEEEEEcCCC
Q 001176 490 -FEGHEAPV-----------------YSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYDAPGNWCTMMAYSADG 550 (1132)
Q Consensus 490 -~~~h~~~v-----------------~~i~~~~~~~~~~l~s~s~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 550 (1132)
..++...+ .++.|+|+ |+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpD--g~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN--GTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT--SSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEECCC--CCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 22333323 34788775 488888876655 8888764322110 233456677777766
Q ss_pred CEEEEEecCCCCCCeEEEEeCCC---Cc--eeeeecc------ccCCceEEEEEeCCCCEEEEEE----cCCeEEEEECC
Q 001176 551 TRLFSCGTSKEGESHLVEWNESE---GA--IKRTYSG------FRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMD 615 (1132)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~---~~--~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~ 615 (1132)
... ....|++||+.+ ++ ....+.. +.. .+..++|+|||+.++... .+..|++||+.
T Consensus 223 ~~~--------~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~ 293 (740)
T 4a5s_A 223 AVN--------PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDH-YLCDVTWATQERISLQWLRRIQNYSVMDICDYD 293 (740)
T ss_dssp SCC--------CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCE-EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred CcC--------CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCe-EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC
Confidence 431 234599999998 73 2223332 333 688899999998766643 23479999999
Q ss_pred CCe----eE--EEE--eCCCCCCC---cceEEEcCCCCEEE-EEeC-CC--cEEEEEcCCc
Q 001176 616 NMN----ML--TTV--DADGGLPA---SPRLRFNKEGSLLA-VTTS-DN--GIKILANSDG 661 (1132)
Q Consensus 616 ~~~----~~--~~~--~~~~~~~~---v~~~~~s~~~~~l~-~~~~-dg--~i~iw~~~~~ 661 (1132)
+++ +. ..+ ..+..... ....+|+|||+.++ ..+. +| .|.+|+..++
T Consensus 294 tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 886 11 111 22222111 23789999999877 6654 33 5677776654
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=2.7e-18 Score=192.88 Aligned_cols=240 Identities=13% Similarity=0.087 Sum_probs=178.7
Q ss_pred EEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCC-CCeEEEEEeCCCCCeE-EEEeCCCcEEEEEcccceeeeeec
Q 001176 842 CIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNII-AIGMEDSSVQIYNVRVDEVKTKLK 918 (1132)
Q Consensus 842 ~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~~l~ 918 (1132)
.+++++++.++++++ +++|++||..+++.+..+..+. ..+..++|+| +++++ +++..++.|.+||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356778888888887 8999999999999988887543 2578999999 77654 555678999999999998877765
Q ss_pred ccc------CCeeEEEEcCCCCEEEEEcCC------------CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEEC
Q 001176 919 GHQ------NRITGLAFSPTLNALVSSGAD------------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 980 (1132)
Q Consensus 919 ~h~------~~V~~l~~spdg~~l~s~~~D------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 980 (1132)
.+. ..+.+++|+|||++|++++.+ +.|.+||+.+++........ ... ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--cCC----CcccceeEC
Confidence 332 337899999999999998865 89999999886533221111 111 246789999
Q ss_pred CCCcEEEEEeCCeEEEEeC-CCCceeecCCCC------------------------------------------------
Q 001176 981 NDQTHLLVVHESQISVYDS-KLECSRSWSPKD------------------------------------------------ 1011 (1132)
Q Consensus 981 ~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~------------------------------------------------ 1011 (1132)
|||+ ++++ ++.|.+||. +++....+....
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5553 445999999 555544432221
Q ss_pred -----------------CCCCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEE
Q 001176 1012 -----------------ALPAPISSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVI 1073 (1132)
Q Consensus 1012 -----------------~h~~~i~~i~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1073 (1132)
.+...+.+++|+| ||++|+++ ++.|.+||+.+++.+..+.. + ..+..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----------~--~~~~~~ 300 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL----------D--HTYYCV 300 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC----------S--SCCCEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC----------C--CCccce
Confidence 0012456778889 99999988 89999999999988766531 1 235689
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCccccc
Q 001176 1074 APHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1105 (1132)
Q Consensus 1074 ~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~~ 1105 (1132)
+|+| ++++|++++.++.|.+||+.+++....
T Consensus 301 ~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 301 AFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp EECS-SSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred EECC-CCCEEEEecCCCeEEEEeccccceeee
Confidence 9999 777788888999999999999884433
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=6.2e-18 Score=189.91 Aligned_cols=281 Identities=9% Similarity=0.070 Sum_probs=191.1
Q ss_pred EEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccC-CCCcCeEEEEEcCCCCeEE-EEeC
Q 001176 348 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVWGPDGLMLG-VAFS 425 (1132)
Q Consensus 348 ~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~~la-s~~~ 425 (1132)
+++++++++ ++++++.++.|.+||+.+++.+.. +. +....+..++|+|||++++ ++..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 457888886 788889999999999998876542 11 1222577899999998665 4556
Q ss_pred CCeEEEEEecCCCceeeeeeee-cc-----cCCEEEEEEecCCCcEEEEEEcCC------------CcEEEEECCCCeE-
Q 001176 426 KHIVHLYTYNPTGELRQHLEID-AH-----VGGVNDIAFAHPNKQLCIVTCGDD------------KMIKVWDVVAGRK- 486 (1132)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~l~-~h-----~~~v~~v~~s~d~~~~~l~s~~~d------------g~v~vwd~~~~~~- 486 (1132)
++.|.+||+.+++.... +. .+ ...+.+++|+|||+ ++++++.+ +.|.+||+.+++.
T Consensus 64 ~~~i~~~d~~t~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFH---ANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEEE---EESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEEE---EEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 89999999998765542 22 12 23478999999999 67777654 8999999988543
Q ss_pred --EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------------------C---e
Q 001176 487 --QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------------------N---W 540 (1132)
Q Consensus 487 --~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------------------~---~ 540 (1132)
+..+. +...+.+++|+|++ . +++++ +.|.+||+.+++....+.... . .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~dg--~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAADDG--S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECTTS--C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECCCC--c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 34444 33468888898755 5 44443 449999998887666554332 0 3
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee-eeccccCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCe
Q 001176 541 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR-TYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 541 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
...+++++++........ ....+..+|..+++... .+... ...+..++|+| ++++++++ ++.|++||+.+++
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~ 286 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL-TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK 286 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEEC-SSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccC-CCcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence 445667665532211000 01112234555444221 11122 22678899999 99998888 8899999999999
Q ss_pred eEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecc
Q 001176 619 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 619 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
.+..+.... .+.+++|+|+|++|++++.++.|.+||..++ +....+.
T Consensus 287 ~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~~ 333 (349)
T 1jmx_B 287 LIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNIK 333 (349)
T ss_dssp EEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEEE
T ss_pred EEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc-ceeeeee
Confidence 888876432 4689999999999998888999999999988 5555544
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=6.2e-17 Score=182.61 Aligned_cols=298 Identities=10% Similarity=0.085 Sum_probs=185.8
Q ss_pred CCCEEEEEecCCCCCCeEEEEeC--CCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCC--CeeE
Q 001176 549 DGTRLFSCGTSKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----FQIKFWDMDN--MNML 620 (1132)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~~~~ 620 (1132)
+..+++.++....+++.|++|++ .+++.......+. ..+..++|+|++++|++++.+ +.|.+|++.. ++..
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~-~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV-ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC-SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC-CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 34456666654445667888866 4565443322233 356779999999999998875 7999998865 4432
Q ss_pred --EEEeCCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCc
Q 001176 621 --TTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 697 (1132)
Q Consensus 621 --~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 697 (1132)
.....+. .....+++ ++++|++++ .++.|.+|++.....+ ..+...... .+
T Consensus 91 ~~~~~~~~~--~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~------------------~g--- 144 (361)
T 3scy_A 91 LLNTQKTMG--ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGAL-LPASDVIEF------------------KG--- 144 (361)
T ss_dssp EEEEEECSS--SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCB-CSCSEEEEC------------------CC---
T ss_pred EeeEeccCC--CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcC-cccceeEEc------------------cC---
Confidence 3333222 24566777 888777776 5789999998754221 111000000 00
Q ss_pred cccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEE
Q 001176 698 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY 777 (1132)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 777 (1132)
. + . .+...+...+.+++|
T Consensus 145 ----------~---------------------------------~------------~-------~~~~~~~~~~~~~~~ 162 (361)
T 3scy_A 145 ----------S---------------------------------G------------P-------DKERQTMPHLHCVRI 162 (361)
T ss_dssp ----------C---------------------------------C------------S-------CTTTCSSCCEEEEEE
T ss_pred ----------C---------------------------------C------------C-------CccccCCCcceEEEE
Confidence 0 0 0 000012345688999
Q ss_pred ecCCceEEeec-ccceeEEEeeccccCCCCCc-cccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEe
Q 001176 778 TNSGLSLLALA-SNAVHKLWKWQRTERNPSGK-ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA 855 (1132)
Q Consensus 778 s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~ 855 (1132)
+|+|+++++++ .++.+.+|++.........+ .... +........ + ......++|+|||++++++
T Consensus 163 spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~----------~~~~~~~~~---~-~~~~~~~~~spdg~~l~v~ 228 (361)
T 3scy_A 163 TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK----------GTPEAFKVA---P-GSGPRHLIFNSDGKFAYLI 228 (361)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE----------EEEEEEECC---T-TCCEEEEEECTTSSEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec----------ccccceecC---C-CCCCeEEEEcCCCCEEEEE
Confidence 99999776655 47899999875321000000 0000 000011111 2 4457889999999988777
Q ss_pred e--CCeEEEEECCCCeE--EEEee---CCCCCeEEEEEeCCCCCeEEEEeC--CCcEEEEEcc--cce--eeeeeccccC
Q 001176 856 S--GGKVSLFNMMTFKV--MTMFM---SPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVR--VDE--VKTKLKGHQN 922 (1132)
Q Consensus 856 s--dg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~sp~~~~~lasg~~--dg~v~iwd~~--~~~--~~~~l~~h~~ 922 (1132)
+ ++.|.+||+.+++. +..+. .+......++|+| ++++|+++.. ++.|.+|++. +++ .+..+.. ..
T Consensus 229 ~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~ 306 (361)
T 3scy_A 229 NEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GI 306 (361)
T ss_dssp ETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SS
T ss_pred cCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CC
Confidence 6 78999999987754 33332 2335578999999 8888866665 4899999996 444 4444544 55
Q ss_pred CeeEEEEcCCCCEEEEEc-CCCcEEEEECC
Q 001176 923 RITGLAFSPTLNALVSSG-ADAQLCMWSID 951 (1132)
Q Consensus 923 ~V~~l~~spdg~~l~s~~-~D~~i~iwd~~ 951 (1132)
.+.+++|+|||++|++++ .++.|.+|+++
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 307 HPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 788999999999888877 67899997654
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=7.7e-17 Score=181.85 Aligned_cols=272 Identities=14% Similarity=0.158 Sum_probs=185.0
Q ss_pred EEEEEc----CCCcEEEEecC--CCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC----C
Q 001176 358 ILLVGT----NVGDISLWEVG--SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----H 427 (1132)
Q Consensus 358 lla~g~----~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d----g 427 (1132)
.+++|+ .++.|.+|.+. +++.... . .. +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~---------------~---~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPL---------------S---DA-EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEE---------------E---EE-ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEe---------------e---cc-cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 456664 45689999774 3433211 0 11 56678889999999999999875 7
Q ss_pred eEEEEEecCC-CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE------ecC--------
Q 001176 428 IVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT------FEG-------- 492 (1132)
Q Consensus 428 ~i~iwd~~~~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~------~~~-------- 492 (1132)
.|.+|+++.. ..+........+......+++ +++. ++++...++.|.+|++.....+.. ..+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 9999999874 334433344445566778888 7773 444445789999999975433221 111
Q ss_pred CCCCeEEEEeeccCCccEEEE-EecCCeEEEEEcCCCCc------e-------EEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 493 HEAPVYSVCPHHKESIQFIFS-TAIDGKIKAWLYDYLGS------R-------VDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s-~s~dg~i~~wd~~~~~~------~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
+...+.+++|+|++ +++++ ...++.|++|+++.... . .........+..++|+|||++++++..
T Consensus 153 ~~~~~~~~~~spdg--~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 153 TMPHLHCVRITPDG--KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SSCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEEECCCC--CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 12345789998754 65544 44589999999886542 1 222334556789999999998887763
Q ss_pred CCCCCCeEEEEeCCCCce--eeeecccc--CCceEEEEEeCCCCEEEEEEc--CCeEEEEECC--CCe--eEEEEeCCCC
Q 001176 559 SKEGESHLVEWNESEGAI--KRTYSGFR--KRSLGVVQFDTTRNRFLAAGD--EFQIKFWDMD--NMN--MLTTVDADGG 628 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~--~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~~ 628 (1132)
.++.|.+||+.+++. +..+.... ......++|+|+|++|+++.. ++.|.+|++. +++ .+..+.. +
T Consensus 231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g- 305 (361)
T 3scy_A 231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G- 305 (361)
T ss_dssp ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S-
T ss_pred ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C-
Confidence 467899999987754 22232211 124678999999999977765 4899999986 444 3444443 2
Q ss_pred CCCcceEEEcCCCCEEEEEe-CCCcEEEEEcC
Q 001176 629 LPASPRLRFNKEGSLLAVTT-SDNGIKILANS 659 (1132)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~ 659 (1132)
..+..++|+|||++|++++ .++.|.+|++.
T Consensus 306 -~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 306 -IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 2578999999999988887 57899997554
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=2.8e-17 Score=187.61 Aligned_cols=254 Identities=10% Similarity=0.007 Sum_probs=175.0
Q ss_pred cCCCCcCeEE-----EEEcCCCCeEEEEeC-CC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC
Q 001176 401 LNDAAISVNR-----CVWGPDGLMLGVAFS-KH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 472 (1132)
Q Consensus 401 ~~~h~~~V~~-----v~~spdg~~las~~~-dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~ 472 (1132)
+..|...... .+|||||++|+.++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 4455555555 889999999999887 66 48888888875443 2345555566789999999 7888888
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe----------------------cCCeEEEEEcCCCCc
Q 001176 473 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA----------------------IDGKIKAWLYDYLGS 530 (1132)
Q Consensus 473 dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s----------------------~dg~i~~wd~~~~~~ 530 (1132)
++.|++||+.+++....+..+...+....+..+.++..++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 9999999999998877776666666556554455667776432 347899999988754
Q ss_pred eEEecCCCCeEEEEEEcC-CCCEEEEEecCCC--CCCeEEEEeCCCCceeeeeccccC-CceEEEEEeCCCCEEEEEEc-
Q 001176 531 RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKE--GESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGD- 605 (1132)
Q Consensus 531 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~- 605 (1132)
. .+..+...+..++|+| ||+.|+.+..... ....|+++|...+.... +..+.. ..+...+|+|||+.|+..+.
T Consensus 181 ~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 T-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp E-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred E-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECCCCCEEEEEecC
Confidence 4 3444556789999999 9999988764221 14478899987655433 333332 24777899999998766442
Q ss_pred CC----eEEEEECCCCeeEEEEeCCCCC---CCcceEEEcCCCCEEEEE---------eCCCcEEEEEcCCc
Q 001176 606 EF----QIKFWDMDNMNMLTTVDADGGL---PASPRLRFNKEGSLLAVT---------TSDNGIKILANSDG 661 (1132)
Q Consensus 606 dg----~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~---------~~dg~i~iw~~~~~ 661 (1132)
++ .|++||+.+++........... .....++|+|||+.|+.. ..+..|++||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 22 3999999998754332222100 012335799999988754 44668999998876
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=1.7e-17 Score=187.08 Aligned_cols=251 Identities=13% Similarity=0.087 Sum_probs=170.1
Q ss_pred CCCeeEEEEeeCCCEEEEeeCCeEEEEECC-CCeEEEEeeC-CCCCeEEEEEeCCCCC--eEEEEe-------------C
Q 001176 837 EESAACIALSKNDSYVMSASGGKVSLFNMM-TFKVMTMFMS-PPPAATFLAFHPQDNN--IIAIGM-------------E 899 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~sdg~i~vwd~~-~~~~~~~~~~-~~~~i~~l~~sp~~~~--~lasg~-------------~ 899 (1132)
...+..++|+|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| +++ +++++. .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 346788999999999998884499999997 7776543321 113466799999 788 455553 6
Q ss_pred CCcEEEEEcc-cceeeeeec----cccCCeeEEEEcCCCCEEEEEc-CCCcEEEEECC-CcccccceeeeCCCCCCCCCC
Q 001176 900 DSSVQIYNVR-VDEVKTKLK----GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLV 972 (1132)
Q Consensus 900 dg~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~spdg~~l~s~~-~D~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~ 972 (1132)
+|.+.+|++. +++....+. .+...+.+++|+|||++|+++. .++.|++|++. +++......+.... + ..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GD 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TC
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CC
Confidence 8999999997 466544443 2456799999999999888765 46799999998 65532211121111 0 13
Q ss_pred CceeEEECCCCcEEEEEe--CCeEEEEeCC---CCce---eecCCC----CCCCC------CeEEEE-EccCCCEEEEEe
Q 001176 973 GETKVQFHNDQTHLLVVH--ESQISVYDSK---LECS---RSWSPK----DALPA------PISSAI-YSCDGLLVYAGF 1033 (1132)
Q Consensus 973 ~v~~~~~s~dg~~l~~~~--d~~v~vwd~~---~~~~---~~~~~~----~~h~~------~i~~i~-~s~dg~~las~~ 1033 (1132)
.+..++|+|||++++++. ++.|.+|+++ ++.. ..+... .+|.. .+..++ |+|||++|++++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 578999999999998853 6789999762 3321 111111 12222 588999 999999988776
Q ss_pred cCC------cEEEEeCC-CcceecccCCCccccccccCCCCCCcEEEEeCCC--CCCeEEEEeCC-CcEEEEecCCC
Q 001176 1034 CDG------AIGVFDAE-TLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS--EPNQIALGMSD-GAVHVVEPSDA 1100 (1132)
Q Consensus 1034 ~dg------~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~D-g~i~vW~~~~~ 1100 (1132)
.+. +|.+|++. +|+...... ....+...+..++|+|. |+++|++++.+ +.|.+|++...
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~--------~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLF--------LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEE--------EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeee--------eeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 533 89999996 565432110 00112233456788885 57888888865 89999999765
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=1.6e-16 Score=179.20 Aligned_cols=247 Identities=10% Similarity=0.072 Sum_probs=172.7
Q ss_pred CcCeEEEEEcCCCCeEEEEeCCCeEEEEEec-CCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc------------
Q 001176 405 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG------------ 471 (1132)
Q Consensus 405 ~~~V~~v~~spdg~~las~~~dg~i~iwd~~-~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~------------ 471 (1132)
...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3467899999999999998888 99999997 664332 1111111 236679999999843345553
Q ss_pred -CCCcEEEEECC-CCeEEEEec----CCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEcC-CCCceE--Eec--CCCC
Q 001176 472 -DDKMIKVWDVV-AGRKQYTFE----GHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD-YLGSRV--DYD--APGN 539 (1132)
Q Consensus 472 -~dg~v~vwd~~-~~~~~~~~~----~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~~wd~~-~~~~~~--~~~--~~~~ 539 (1132)
.++.+.+|++. +++....+. .+...+.+++|+|++ ++++++. .++.|++||++ +++... .+. .+..
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG--~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE--TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC--CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 68999999997 566554443 255679999998754 6777665 47899999998 554322 232 2356
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC--CCceee---eec---ccc-C-C-------ceEEEE-EeCCCCEEE
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAIKR---TYS---GFR-K-R-------SLGVVQ-FDTTRNRFL 601 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~~---~~~---~~~-~-~-------~v~~~~-~~~~~~~l~ 601 (1132)
.+..++|+|||++++++.. .++.|.+|++. +++... .+. ... . . .+..++ |+|+|++|+
T Consensus 194 ~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 7899999999999988763 35679998764 565421 222 110 1 1 377899 999999988
Q ss_pred EEEcC-C-----eEEEEECC-CCeeEEE---EeCCCCCCCcceEEEcC---CCCEEEEEeCC-CcEEEEEcCCc
Q 001176 602 AAGDE-F-----QIKFWDMD-NMNMLTT---VDADGGLPASPRLRFNK---EGSLLAVTTSD-NGIKILANSDG 661 (1132)
Q Consensus 602 ~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~~~~s~---~~~~l~~~~~d-g~i~iw~~~~~ 661 (1132)
+++.+ . .|.+|++. +++.... ...+. ..+..++|+| ||++|++++.+ +.|.+|++...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 76533 2 89999996 5665432 22222 2467899999 89999998864 89999998765
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=7.5e-16 Score=172.47 Aligned_cols=312 Identities=9% Similarity=0.082 Sum_probs=206.3
Q ss_pred CccEEEEEe------cCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEec------CCCCCCeEEEEeCCCC
Q 001176 507 SIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT------SKEGESHLVEWNESEG 574 (1132)
Q Consensus 507 ~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~~~~~i~~wd~~~~ 574 (1132)
++.+++... .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 335555543 4789999999888877666655444 8999999999998852 1123567999999999
Q ss_pred ceeeeecccc-----CCceEEEEEeCCCCEEEEEEc--CCeEEEEECCCCeeEEE-EeCCCCCCCcceEEEcCCC-CEEE
Q 001176 575 AIKRTYSGFR-----KRSLGVVQFDTTRNRFLAAGD--EFQIKFWDMDNMNMLTT-VDADGGLPASPRLRFNKEG-SLLA 645 (1132)
Q Consensus 575 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~-~~l~ 645 (1132)
+.+.++.... ......++++|+|++++++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 9888776431 124566999999999999874 68999999999998887 65432 2335677765 6778
Q ss_pred EEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcC
Q 001176 646 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 725 (1132)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1132)
+.+.||.+.+|++....+...... ..
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~--~~---------------------------------------------------- 193 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR--SK---------------------------------------------------- 193 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE--CC----------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeecc--cc----------------------------------------------------
Confidence 889999999998865212221110 00
Q ss_pred CcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCC
Q 001176 726 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 805 (1132)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~ 805 (1132)
.+|+... ....+.+++++..++..+.++.+.++|+.......
T Consensus 194 -------------------~~~~~~~-------------------~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~ 235 (361)
T 2oiz_A 194 -------------------QMFSVKD-------------------DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV 235 (361)
T ss_dssp -------------------CCSCTTT-------------------SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE
T ss_pred -------------------ceEcCCC-------------------CceEEEecccCCEEEEEeCCCeEEEEEecCCCcee
Confidence 0011000 00011123444445555556666666653211100
Q ss_pred CCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee------------CCeEEEEECCCCeEEEE
Q 001176 806 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS------------GGKVSLFNMMTFKVMTM 873 (1132)
Q Consensus 806 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s------------dg~i~vwd~~~~~~~~~ 873 (1132)
...|............ . ......++|+||++.++++. .++|.+||+.+++.+.+
T Consensus 236 ---------~~~~~~~~~~~~~~~~----~-p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 236 ---------DGPWSLLNDEDKAKNW----V-PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp ---------EEEEESCCHHHHHTTC----E-ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred ---------cccccccCcccccccc----c-cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 0001110000000000 0 11122378999988877653 24799999999999999
Q ss_pred eeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc--eeeeeeccccCCeeEEEEcCCCC
Q 001176 874 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPTLN 934 (1132)
Q Consensus 874 ~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~ 934 (1132)
+..+. +.+++|+| ++++|+++.. +.|.+||..++ +.+.++..+......++++|+|+
T Consensus 302 i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 302 IPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EECTT--CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EecCC--eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99877 99999999 8888888876 99999999999 99998877788889999999986
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=8.1e-16 Score=172.20 Aligned_cols=220 Identities=11% Similarity=0.047 Sum_probs=154.7
Q ss_pred CeeEEEEeeCCCEEEEee---CCeEEEEECCCCeEEEE-eeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc-cee
Q 001176 839 SAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEV 913 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~ 913 (1132)
....++++|||++|+++. +++|.+||+.+++.+.+ +... ....+.+.|.+...+++.+.||.+.+|++.. ++.
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~ 186 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV 186 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence 356789999999998875 47899999999988877 5532 2233667784457788889999999999865 554
Q ss_pred ee------eeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCC------CCCCCCCCceeEEECC
Q 001176 914 KT------KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA------GRQSPLVGETKVQFHN 981 (1132)
Q Consensus 914 ~~------~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~ 981 (1132)
.. .+..+..++ .+.+++++..++..+.++.|.++|+............... +.. ......++|+|
T Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--p~g~~~~a~~~ 263 (361)
T 2oiz_A 187 ASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV--PGGYNLVGLHR 263 (361)
T ss_dssp EEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE--ECCSSCEEEET
T ss_pred eeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccc--cCCeeEEEEec
Confidence 41 223333332 3445788888888888999999999765422111111100 000 01223479999
Q ss_pred CCcEEEEE-e-----------CCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCc--
Q 001176 982 DQTHLLVV-H-----------ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL-- 1046 (1132)
Q Consensus 982 dg~~l~~~-~-----------d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~-- 1046 (1132)
|+++++++ . .+.|.+||+ +.+.+..+..+ . ..+++|+|||++|++++. +.|.+||..++
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~---~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l 337 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR---D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP 337 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT---T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSC
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC---C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc
Confidence 99888874 3 247999999 66666666432 3 899999999999998886 99999999999
Q ss_pred ceecccCCCccccccccCCCCCCcEEEEeCCCCCC
Q 001176 1047 RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN 1081 (1132)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 1081 (1132)
+.+..+. .+...+..++++| +|+
T Consensus 338 ~~~~~i~-----------~~G~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 338 KLLRTIE-----------GAAEASLQVQFHP-VGG 360 (361)
T ss_dssp EEEEEET-----------TSCSSEEEEEECC-CSC
T ss_pred eeeEEec-----------cCCCCcEEEEecC-CCC
Confidence 8887753 3456788899999 543
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=1.9e-16 Score=181.38 Aligned_cols=297 Identities=9% Similarity=-0.036 Sum_probs=191.0
Q ss_pred cccceEEeec-CCCC-----eeEEEEccCCCeEEEEEcCC--CcEEEEecCCCccccccceeeeecccccccccccccCC
Q 001176 332 LTKTVVRTLN-QGSN-----VMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 403 (1132)
Q Consensus 332 ~~~~~~~~l~-h~~~-----V~~~~~spdg~~lla~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1132)
.++..+..+. +... +.+++|||||++++++...+ ..|.+||+.+++.... ..+
T Consensus 18 ~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~ 78 (396)
T 3c5m_A 18 DTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEG 78 (396)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCS
T ss_pred CCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecC
Confidence 3444555554 3233 78899999999766665443 3688889888764321 122
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEE-------------------EEEecCCCc
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVND-------------------IAFAHPNKQ 464 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~-------------------v~~s~d~~~ 464 (1132)
+......+.|||||++|+.++.++.|++||+.+++... ....+...... +.|+|+++.
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~ 155 (396)
T 3c5m_A 79 KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW 155 (396)
T ss_dssp SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred CCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc
Confidence 22223347899999999999999999999999876433 12223332222 356777773
Q ss_pred EEEEEE-----cCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEcCCCCceEE
Q 001176 465 LCIVTC-----GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVD 533 (1132)
Q Consensus 465 ~~l~s~-----~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~ 533 (1132)
++.+ ..+..|.+||+.+++..... .+...+..+.|+|. ++..|+..+.+ ..|.+||+........
T Consensus 156 --~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (396)
T 3c5m_A 156 --EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI 231 (396)
T ss_dssp --HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEES
T ss_pred --eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEe
Confidence 3332 45678999999988765444 46778899999872 22556555543 3688888865543332
Q ss_pred ecCC-CCeEEEEEEcCCCCEEEEEecCC-CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC-CCCEEEEEE------
Q 001176 534 YDAP-GNWCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAG------ 604 (1132)
Q Consensus 534 ~~~~-~~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~------ 604 (1132)
.... ...+..++|+|||++|+..+... ...+.|++||+.+++........ ... +.|+| +|+.+++++
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 232 KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVD 307 (396)
T ss_dssp SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC---
T ss_pred eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCccee
Confidence 2221 23688899999999887765421 11244999999988754433221 233 88999 999888754
Q ss_pred ----------cCCeEEEEECCCCeeEEEEeCCCCC--------CCcceEEEcCCCCEEEEEeC-CCcEEEEEc
Q 001176 605 ----------DEFQIKFWDMDNMNMLTTVDADGGL--------PASPRLRFNKEGSLLAVTTS-DNGIKILAN 658 (1132)
Q Consensus 605 ----------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~ 658 (1132)
.++.|++||+.+++........... ..+..++|+|||+.|+.++. ++...+|.+
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp -------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 3478999999887754332222110 02567899999998887765 455555543
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.70 E-value=5.6e-16 Score=177.36 Aligned_cols=318 Identities=13% Similarity=0.038 Sum_probs=193.0
Q ss_pred EEcCCCCceEEecCCCCe-----EEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCC
Q 001176 523 WLYDYLGSRVDYDAPGNW-----CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 597 (1132)
Q Consensus 523 wd~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 597 (1132)
.|..++.....+..+... +..++|+|||++|+..... +++..|++||+.+++......+... ....+.|+|+|
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~~~~~l~~~~~~-~~~~~~~spdg 92 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQQAVQLTEGKGD-NTFGGFISTDE 92 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTTEEEECCCSSCB-CTTTCEECTTS
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec-CCCceEEEEECCCCcEEEeecCCCC-ccccceECCCC
Confidence 355555555555444332 5678999999998877642 3456799999988876544333221 23337799999
Q ss_pred CEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeecccccccccc
Q 001176 598 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 677 (1132)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (1132)
++|+.++.++.|++||+.+++.......+.. |+++|+.|+....++...+|..
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~l~~~~~~~~~~~~~~------------------- 145 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTWVANSDCTKLVGIEIL------------------- 145 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECTTSSEEEEEEEE-------------------
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCEEEeccCCcccccccc-------------------
Confidence 9999999999999999998876655553321 6667776666555444333321
Q ss_pred CCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCc
Q 001176 678 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 757 (1132)
Q Consensus 678 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~ 757 (1132)
T Consensus 146 -------------------------------------------------------------------------------- 145 (396)
T 3c5m_A 146 -------------------------------------------------------------------------------- 145 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEecCCcccccceEEEEEecCCceEEee-----cccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCC
Q 001176 758 IKALRLPDSIAASKVVRLIYTNSGLSLLAL-----ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 832 (1132)
Q Consensus 758 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 832 (1132)
...++|+++.++.. ..+..|.+||+. ++..... ..
T Consensus 146 ----------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~----------------------~g~~~~~-~~- 185 (396)
T 3c5m_A 146 ----------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE----------------------TGELEVI-HQ- 185 (396)
T ss_dssp ----------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETT----------------------TCCEEEE-EE-
T ss_pred ----------------ccccCCCCcceeeeeeccCCCcceEEEEECC----------------------CCcEEee-cc-
Confidence 00123333333322 123344444432 2221111 01
Q ss_pred CCCCCCCeeEEEEee-CCCEEEEee-C------CeEEEEECCCCeEEEEeeCC-CCCeEEEEEeCCCCCeEEEEeCC---
Q 001176 833 SKPTEESAACIALSK-NDSYVMSAS-G------GKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIGMED--- 900 (1132)
Q Consensus 833 ~~h~~~~v~~~~~s~-dg~~la~~s-d------g~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~~lasg~~d--- 900 (1132)
+ ...+..++|+| |++.|+..+ + ..|.+||+.+++........ ...+..++|+| +++.|+.++.+
T Consensus 186 --~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~ 261 (396)
T 3c5m_A 186 --D-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQ 261 (396)
T ss_dssp --E-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT-TSSCEEEEEEETTT
T ss_pred --C-CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC-CCCEEEEEecCCCC
Confidence 2 45678899999 888777665 2 36899998766543333321 23578899999 88877776544
Q ss_pred --CcEEEEEcccceeeeeeccccCCeeEEEEcC-CCCEEEEEc----------------CCCcEEEEECCCcccccceee
Q 001176 901 --SSVQIYNVRVDEVKTKLKGHQNRITGLAFSP-TLNALVSSG----------------ADAQLCMWSIDKWEKLKSRFI 961 (1132)
Q Consensus 901 --g~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~~----------------~D~~i~iwd~~~~~~~~~~~~ 961 (1132)
+.|++||+.+++...... .. ... +.|+| ||+++++++ .+..|++||+.+++.. .+
T Consensus 262 ~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l 335 (396)
T 3c5m_A 262 TDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ---KL 335 (396)
T ss_dssp CCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC---EE
T ss_pred ccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE---Ec
Confidence 459999998886543322 11 233 89999 999888765 3478999999887632 12
Q ss_pred eCCCCCC-----CCCCCceeEEECCCCcEEEEEe--CCeEEEEeC
Q 001176 962 QAPAGRQ-----SPLVGETKVQFHNDQTHLLVVH--ESQISVYDS 999 (1132)
Q Consensus 962 ~~~~~~~-----~~~~~v~~~~~s~dg~~l~~~~--d~~v~vwd~ 999 (1132)
....... .....+..++|+|||++|+... ++...+|.+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 336 CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 2111100 0001245678999999988843 344444443
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=1e-14 Score=163.33 Aligned_cols=264 Identities=8% Similarity=0.101 Sum_probs=179.8
Q ss_pred CCCeeEEEEccCCCeEEEEE--------cCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 343 GSNVMSMDFHPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g--------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
-..+..++| ||++++++. +.++.|.+||+.+++... + ..+.+++||
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~S 67 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRIS 67 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEEC
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEEC
Confidence 346778888 888655543 226789999998875421 2 468899999
Q ss_pred CCCCeEEEEeCC---C--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC-----------------
Q 001176 415 PDGLMLGVAFSK---H--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----------------- 472 (1132)
Q Consensus 415 pdg~~las~~~d---g--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~----------------- 472 (1132)
|||++||.++.+ + .|.+|++.+++... +..+.. +..++|+|||+ .|+.++.
T Consensus 68 pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
T 2gop_A 68 PDGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAW 140 (347)
T ss_dssp TTSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC
T ss_pred CCCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEccccee
Confidence 999999988654 3 37777887765332 222334 99999999999 5555542
Q ss_pred ----------CCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCC-------eEEEEEcCCCCceEEec
Q 001176 473 ----------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG-------KIKAWLYDYLGSRVDYD 535 (1132)
Q Consensus 473 ----------dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg-------~i~~wd~~~~~~~~~~~ 535 (1132)
...|.+||+.+++.+..+.. . .+..++|+| +| +++++..++ ...+|.++ .+....+.
T Consensus 141 ~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~ 214 (347)
T 2gop_A 141 FDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMF 214 (347)
T ss_dssp ---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEE
T ss_pred ecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC--Ce-EEEEEecccccccccccccEEEeC-CCceEEec
Confidence 25799999999887555554 3 788889986 45 777776542 44555555 33334333
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecCCC----CCCeEEEEeCCCCceeeeeccccCCceEE-EEEeCCCCEEEEEEcCCeEE
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTSKE----GESHLVEWNESEGAIKRTYSGFRKRSLGV-VQFDTTRNRFLAAGDEFQIK 610 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~ 610 (1132)
.+ ..+..+ +|||++|+..+.... ....|++|| +++.......+.. .+.. +.|+ ++ .+++++.++.++
T Consensus 215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEE
T ss_pred cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEE
Confidence 33 444444 999999987764321 245788998 5655444444433 6775 8899 88 888889999999
Q ss_pred EEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcE-EEEEcC
Q 001176 611 FWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI-KILANS 659 (1132)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i-~iw~~~ 659 (1132)
+| +.+++....+.. ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 876665444332 23688999999 677777777665 777776
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=3.6e-13 Score=158.10 Aligned_cols=190 Identities=13% Similarity=0.085 Sum_probs=144.0
Q ss_pred cEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcC--CCCceEEecCCCCeE
Q 001176 464 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWC 541 (1132)
Q Consensus 464 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~~~~~~~~~~v 541 (1132)
.+++++...+++|.++|..+++.+.++... ..+..+.++|+ |.++++++.|+.|.+||+. +.+....+.. +...
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P 242 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEA 242 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCC--CCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCC
Confidence 337888899999999999999999888643 35668888774 4899999999999999995 6665555554 4456
Q ss_pred EEEEEc----CCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc----------cCCceEEEEEeCCCCEEEE-EEcC
Q 001176 542 TMMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF----------RKRSLGVVQFDTTRNRFLA-AGDE 606 (1132)
Q Consensus 542 ~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~-~~~d 606 (1132)
..++|+ |||++++++.. ..+.+.++|..+.+.+..+... ....+..+.+++++..++. ...+
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~---~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred ceeEEccccCCCCCEEEEEEc---cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 799999 69999998875 4678999999999988876532 1225677888988766555 4577
Q ss_pred CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCc
Q 001176 607 FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 661 (1132)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~ 661 (1132)
|.|.++|..+.+.+........ .....+.|+|+|++++++. .++.|.++|+.++
T Consensus 320 g~v~~vd~~~~~~~~v~~i~~~-~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp TEEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred CeEEEEecCCCccceeeeeecc-ccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 9999999987643332222111 2456889999999887766 4789999998877
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=2.9e-13 Score=158.87 Aligned_cols=274 Identities=15% Similarity=0.092 Sum_probs=196.9
Q ss_pred eEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEec-
Q 001176 357 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN- 435 (1132)
Q Consensus 357 ~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~- 435 (1132)
.++++...++.|.++|..+++.+.+ +. ....+..++|||||+++++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~-------------------i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------EE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEE-------------------Ee-CCCCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 4778888899999999999887653 11 23356789999999999999999999999996
Q ss_pred -CCCceeeeeeeecccCCEEEEEEe----cCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCC-----------CCCeEE
Q 001176 436 -PTGELRQHLEIDAHVGGVNDIAFA----HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-----------EAPVYS 499 (1132)
Q Consensus 436 -~~~~~~~~~~l~~h~~~v~~v~~s----~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-----------~~~v~~ 499 (1132)
+++.+. ++.... ....++|+ |||+. ++++...+++|.++|..+.+.+.++... ...+..
T Consensus 228 ~t~~~v~---~i~~G~-~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 228 KEPTTVA---EIKIGS-EARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp SSCCEEE---EEECCS-EEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred CCCcEeE---EEecCC-CCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence 665444 333322 35789999 69995 4445556799999999999988876521 125777
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee
Q 001176 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 500 i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
+..++.. ..++++...+|.|.++|.......... .........+.|+|+|++++++.. ..+.|.++|..+++.+.
T Consensus 303 i~~s~~~-~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~---~sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 303 ILASHYR-PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN---ARNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EEECSSS-SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG---GGTEEEEEETTTTEEEE
T ss_pred EEEcCCC-CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC---CCCeEEEEECCCCcEEE
Confidence 7776653 356777778899999998765433221 123445678899999999988764 36679999999999877
Q ss_pred eecc-ccCC-ceEEE-EEeCCCCEEEEEE--cCCeEEEEECCC-------CeeEEEEeCCCCCCCcceEEEcCCCCEEEE
Q 001176 579 TYSG-FRKR-SLGVV-QFDTTRNRFLAAG--DEFQIKFWDMDN-------MNMLTTVDADGGLPASPRLRFNKEGSLLAV 646 (1132)
Q Consensus 579 ~~~~-~~~~-~v~~~-~~~~~~~~l~~~~--~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1132)
.+.. .... +-... .++|++..+++.+ .++.|.++|..+ .+.+.++...+. .-..+..+|+++++.+
T Consensus 379 ~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 379 IEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSLFIKTHPNSQYLYV 456 (567)
T ss_dssp EEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCSEEEE
T ss_pred EEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCEEEEeCCCCCeEEE
Confidence 7654 2110 11112 2688865555444 468999999987 677888876532 2356789999999998
Q ss_pred EeC-------CCcEEEEEcCCc
Q 001176 647 TTS-------DNGIKILANSDG 661 (1132)
Q Consensus 647 ~~~-------dg~i~iw~~~~~ 661 (1132)
... .+.|.++|+.+.
T Consensus 457 ~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 457 DATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp ECTTCSSHHHHTCEEEEEGGGC
T ss_pred ecCCCCCcccCceEEEEECCcc
Confidence 763 358999998654
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=2.2e-14 Score=155.53 Aligned_cols=243 Identities=10% Similarity=0.109 Sum_probs=178.4
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeC------CCCCeEEEEEeCCCCCeEEEEeC-CCcEEEEEc
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS------PPPAATFLAFHPQDNNIIAIGME-DSSVQIYNV 908 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~sp~~~~~lasg~~-dg~v~iwd~ 908 (1132)
-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..+++++.+++++++... ++.|++||
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 45688999999999888766 8999999987 666666542 34568999995327777766643 88999999
Q ss_pred ccceeeeeec-cccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEE
Q 001176 909 RVDEVKTKLK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 987 (1132)
Q Consensus 909 ~~~~~~~~l~-~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 987 (1132)
.+++.+..+. .+...+.+++++|+|+++++...++.|.+|+... +... .+.. .++. ..+..++++++|++++
T Consensus 107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~--~~~~-~~~~---~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLH--KFGC-SKHL---EFPNGVVVNDKQEIFI 179 (286)
T ss_dssp TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEE--EEEC-TTTC---SSEEEEEECSSSEEEE
T ss_pred CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEE--EeCC-CCcc---CCcEEEEECCCCCEEE
Confidence 5677666664 3446789999999999998888889999999754 2211 1111 1111 3578999999999776
Q ss_pred EE-eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEeCCCcceecccCCCccccccccCC
Q 001176 988 VV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-AIGVFDAETLRFRCRIGPSAYIPTYAVSS 1065 (1132)
Q Consensus 988 ~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1132)
+. .++.|.+||.+++.+..+.. .++...+..++++++|+++++...++ .|.+||.. ++.+..+.. +.
T Consensus 180 ~~~~~~~i~~~~~~g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~---------~~ 248 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALES---------KV 248 (286)
T ss_dssp EEGGGTEEEEEETTCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEE---------SS
T ss_pred EECCCCEEEEEcCCCCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcc---------cC
Confidence 64 57899999997776665532 23346789999999999888888776 99999964 666555431 12
Q ss_pred CCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1066 NTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1066 ~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
....+..++++| +++++++ +.|++|++|++....
T Consensus 249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCCcceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence 234577899999 7776666 679999999986643
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=9.1e-15 Score=179.72 Aligned_cols=285 Identities=9% Similarity=-0.017 Sum_probs=188.5
Q ss_pred CCCCeeEEEEccCCCeEEEEE--cCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeE---------E
Q 001176 342 QGSNVMSMDFHPQQQTILLVG--TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN---------R 410 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~---------~ 410 (1132)
|...|..++|++++- +++.+ +.++...||....+..... +..|...+. .
T Consensus 22 ~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~~~~~ 81 (662)
T 3azo_A 22 RSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEYSGFP 81 (662)
T ss_dssp TCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGTCCCC
T ss_pred cCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccccCCcc
Confidence 778999999998864 45565 5688999999644332221 333444444 5
Q ss_pred EEEc--CCCCe-EEEEeC-CCeEEEEEec--C-CCceeeeeeeec-----ccCCEEEEEEecCCCcEEEEEEcCC-----
Q 001176 411 CVWG--PDGLM-LGVAFS-KHIVHLYTYN--P-TGELRQHLEIDA-----HVGGVNDIAFAHPNKQLCIVTCGDD----- 473 (1132)
Q Consensus 411 v~~s--pdg~~-las~~~-dg~i~iwd~~--~-~~~~~~~~~l~~-----h~~~v~~v~~s~d~~~~~l~s~~~d----- 473 (1132)
..|+ |||++ |+.++. +..|.+|++. + +. .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~ 155 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGEG 155 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSSS
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCCC
Confidence 5565 99998 877654 4556666655 2 33 22 2344 667889999999999 67777766
Q ss_pred -----CcEEEEECCC------CeEEEEec-CCCCCeEEEEeeccCCccEEEEEecC--------CeEEEEEcC-CC---C
Q 001176 474 -----KMIKVWDVVA------GRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYD-YL---G 529 (1132)
Q Consensus 474 -----g~v~vwd~~~------~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~d--------g~i~~wd~~-~~---~ 529 (1132)
..|++||+.+ ++ ...+. .+...+..++|+|+ |+.|+.++.+ ..|++||+. ++ .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpD--G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPD--GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTT--SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCC--CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999987 54 45565 66677888888775 4888877755 379999998 44 2
Q ss_pred ceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCC-------ceEEEEEeCCCCEEEE
Q 001176 530 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR-------SLGVVQFDTTRNRFLA 602 (1132)
Q Consensus 530 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~ 602 (1132)
.......+...+..++|+|||++++++.. ++...|++||+.+++.......+... .+..++|+|++..+++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 33333444678999999999996555532 33447888888777765444433221 1456889999999988
Q ss_pred EEcCCeEEEE--ECCCCeeEEEEeCCCCCCCcceE-EEcCCCCEEEEEeCCC--cEEEEEcCCc
Q 001176 603 AGDEFQIKFW--DMDNMNMLTTVDADGGLPASPRL-RFNKEGSLLAVTTSDN--GIKILANSDG 661 (1132)
Q Consensus 603 ~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg--~i~iw~~~~~ 661 (1132)
++. +.+++| |..+++ +..+..+. ..+..+ +++.+.-.+++++.+. .|.++++.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGPW--TEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCCC--CeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 888 999999 655555 55565443 245555 4433333334445554 4555566566
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=1.4e-14 Score=178.00 Aligned_cols=251 Identities=10% Similarity=-0.011 Sum_probs=178.3
Q ss_pred cccCCCCcCeEEEEEcCCCCeEEEE--eCCCeEEEEEecCCCceeeeeeeecccCCEE---------EEEEe--cCCCcE
Q 001176 399 ALLNDAAISVNRCVWGPDGLMLGVA--FSKHIVHLYTYNPTGELRQHLEIDAHVGGVN---------DIAFA--HPNKQL 465 (1132)
Q Consensus 399 ~~~~~h~~~V~~v~~spdg~~las~--~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~---------~v~~s--~d~~~~ 465 (1132)
..+.+|...|..++|++++-++++. +.++...||....+...+ .+..|...+. ...|+ |||+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~-- 91 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGG-- 91 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSS--
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCC--
Confidence 3466789999999999887777777 568899999975544433 4556666666 66676 9998
Q ss_pred E-EEEEc-CCCcEEEEECC--CCeEEEEecC-----CCCCeEEEEeeccCCccEEEEEecC----------CeEEEEEcC
Q 001176 466 C-IVTCG-DDKMIKVWDVV--AGRKQYTFEG-----HEAPVYSVCPHHKESIQFIFSTAID----------GKIKAWLYD 526 (1132)
Q Consensus 466 ~-l~s~~-~dg~v~vwd~~--~~~~~~~~~~-----h~~~v~~i~~~~~~~~~~l~s~s~d----------g~i~~wd~~ 526 (1132)
. |+..+ .+..|.+|++. .......+.. |...+.+++|+|++ +.|++++.+ ..|++||+.
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg--~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER--GEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT--TEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred eEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC--CEEEEEEecccCCCCCCceeEEEEEECC
Confidence 5 55444 35677777765 2034456665 66788899998855 788888877 589999998
Q ss_pred CC-----CceEEec-CCCCeEEEEEEcCCCCEEEEEecCCC----CCCeEEEEeCC-CC---ceeeeeccccCCceEEEE
Q 001176 527 YL-----GSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKE----GESHLVEWNES-EG---AIKRTYSGFRKRSLGVVQ 592 (1132)
Q Consensus 527 ~~-----~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~-~~---~~~~~~~~~~~~~v~~~~ 592 (1132)
+. +....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++.. .+..+.
T Consensus 170 ~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~~~~~~ 248 (662)
T 3azo_A 170 GSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-AIAQAE 248 (662)
T ss_dssp STTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-CEEEEE
T ss_pred CCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-eEcceE
Confidence 72 3344555 55668888999999999998775331 13579999998 56 33333333333 788999
Q ss_pred EeCCCCEEEEEEcCC--eEEEEECCCCeeEEEEeCCCCC------CCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 593 FDTTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGL------PASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 593 ~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
|+|||+.+++++.++ .|++||..+++.......+... ..+..++|++++.++++++. +.+++|.+
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 999999777777777 6777787677655443332211 01567899999999999998 99999944
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.66 E-value=1.4e-14 Score=160.48 Aligned_cols=251 Identities=12% Similarity=0.070 Sum_probs=183.6
Q ss_pred CCCeeEEEEeeCCCEEEEee-C------------------------CeEEEEECCCCeEEEEee-CCCCCeEEEEEeCCC
Q 001176 837 EESAACIALSKNDSYVMSAS-G------------------------GKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQD 890 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~~ 890 (1132)
-..+.+++++|+|+++++.. + ++|.+||..+++.+..+. ++......++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 45689999999999998877 4 379999999898877665 3446789999999 8
Q ss_pred CCeEEEEeCCCcEEEEEcccce-eeeee---------ccccCCeeEEEEcC-CCCEEEEEc-CCCcEEEEECCCcccccc
Q 001176 891 NNIIAIGMEDSSVQIYNVRVDE-VKTKL---------KGHQNRITGLAFSP-TLNALVSSG-ADAQLCMWSIDKWEKLKS 958 (1132)
Q Consensus 891 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~sp-dg~~l~s~~-~D~~i~iwd~~~~~~~~~ 958 (1132)
++++++...++.|++||..... .+..+ .++.....+|+++| ++.++++.+ .++.|++|+.. ++....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEE
Confidence 8888888889999999976442 44444 34555789999999 888888886 79999999954 332221
Q ss_pred eeeeCCCC--CCCCCCCceeEEECCC-CcEEEE-EeCCeEEEEeCC-CCceeecCCCCCCCCCeEEEEEcc------CCC
Q 001176 959 RFIQAPAG--RQSPLVGETKVQFHND-QTHLLV-VHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSC------DGL 1027 (1132)
Q Consensus 959 ~~~~~~~~--~~~~~~~v~~~~~s~d-g~~l~~-~~d~~v~vwd~~-~~~~~~~~~~~~h~~~i~~i~~s~------dg~ 1027 (1132)
........ ..........++++|+ |.++++ ..++.|++|+.. ++.+..+.. ..+...+.+++|+| +|+
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEETTEEEEEECC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecCCEEEEeCCC
Confidence 11110000 0001134689999999 555555 357899999995 777766643 34467889999999 333
Q ss_pred EEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1028 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1028 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
..++...+..|++||+.+++.+..+... .++...+..++++| ++.++++...+++|++|++..
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~--------~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPV--------RKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCS--------SSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCC--------CCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 3333344568999999999988776421 25567789999999 778999999999999999864
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.65 E-value=3.3e-14 Score=157.35 Aligned_cols=245 Identities=12% Similarity=0.083 Sum_probs=181.4
Q ss_pred CCeeEEEEccCCCeEEEEEcCC------------------------CcEEEEecCCCccccccceeeeeccccccccccc
Q 001176 344 SNVMSMDFHPQQQTILLVGTNV------------------------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 399 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1132)
+.|.+++++|+|+ ++++.+.+ +.|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 4788899999987 66776665 4688888887765431
Q ss_pred ccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCC-ceeeeeee---------ecccCCEEEEEEec-CCCcEEEE
Q 001176 400 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEI---------DAHVGGVNDIAFAH-PNKQLCIV 468 (1132)
Q Consensus 400 ~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~-~~~~~~~l---------~~h~~~v~~v~~s~-d~~~~~l~ 468 (1132)
.-.++-..+..++++|+|+++++...++.|++||.++.. .+. .+ .++......++|+| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 012345578999999999998888889999999987542 222 22 23445789999999 676 677
Q ss_pred EEc-CCCcEEEEECCCCeEEEEecC----------CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec--
Q 001176 469 TCG-DDKMIKVWDVVAGRKQYTFEG----------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-- 535 (1132)
Q Consensus 469 s~~-~dg~v~vwd~~~~~~~~~~~~----------h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-- 535 (1132)
+.+ .++.|++|| .+|+.+..+.. +-.....++++++. +.++++...++.|++||.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 776 689999999 67887777742 22348899998752 4788888899999999998777766663
Q ss_pred CCCCeEEEEEEcCCCCEEEEEec---CCCCCCeEEEEeCCCCceeeeec---cccCCceEEEEEeCCCCEEEEEEcCCeE
Q 001176 536 APGNWCTMMAYSADGTRLFSCGT---SKEGESHLVEWNESEGAIKRTYS---GFRKRSLGVVQFDTTRNRFLAAGDEFQI 609 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~---~~~~~~~i~~wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i 609 (1132)
.....+..++++| +..+.+.+. .......|++||..+++.+..+. ++.. .+..++++|+|..+++...++.|
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEE
Confidence 3456788999999 444443321 11235579999999999988874 3333 68899999999777777789999
Q ss_pred EEEECCC
Q 001176 610 KFWDMDN 616 (1132)
Q Consensus 610 ~iwd~~~ 616 (1132)
++|++..
T Consensus 316 ~~~~~~~ 322 (329)
T 3fvz_A 316 WKFTLTE 322 (329)
T ss_dssp EEEEEEE
T ss_pred EEEeCCc
Confidence 9999753
No 179
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.65 E-value=3.6e-10 Score=141.19 Aligned_cols=535 Identities=9% Similarity=0.054 Sum_probs=318.7
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
..|.++...++|. +.+ |+. +.+..||..+++... +... .......|.++...++|.+.+..
T Consensus 88 n~I~~i~~d~~g~-lWi-gT~-~Gl~~yd~~~~~f~~------~~~~----------~~~~~~~i~~i~~d~~g~lwi~t 148 (795)
T 4a2l_A 88 DISRIVKTDSQGR-VWI-GTR-DGLSRYDEEKDIFQN------FFYE----------KNGKHLQVNGIEEISPEQLLIST 148 (795)
T ss_dssp SCEEEEEECTTSC-EEE-EES-SCEEEEETTTTEEEE------ECCE----------ETTEECCCCEEEEEETTEEEEEE
T ss_pred cceeEEEECCCCC-EEE-EeC-CchheeCCCCCeEEe------cccc----------ccCCCceEEEEEECCCCCEEEEE
Confidence 5799999999998 343 444 458999987654321 1000 00000128889888888766544
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecc-cCC-EEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe-cCCCCCeEEE
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDAH-VGG-VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYSV 500 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~-v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~~~v~~i 500 (1132)
. +-|..||..+++... . ..++ ... |.++...+++. +..++.++-|..||..+++..... ......|.++
T Consensus 149 -~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i 220 (795)
T 4a2l_A 149 -P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI 220 (795)
T ss_dssp -T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred -C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence 4 448899977653211 0 0011 123 88898888886 444665556899998777654321 1234568888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 573 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1132)
..... ..|..++.++.+..||..+......... ....|.++...++|...+.. . . -|.+||..+
T Consensus 221 ~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~----~-Gl~~~~~~~ 291 (795)
T 4a2l_A 221 LQQSP---TRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-F----N-DLNIYHEGT 291 (795)
T ss_dssp EEEET---TEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-S----S-CEEEEETTT
T ss_pred EEcCC---CCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-C----C-hhheEcCCC
Confidence 76543 2455566555688898776543322111 23579999999988866644 2 2 389999887
Q ss_pred Cceeeeecc------ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC----CCCCCcceEEEcCCCCE
Q 001176 574 GAIKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD----GGLPASPRLRFNKEGSL 643 (1132)
Q Consensus 574 ~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~ 643 (1132)
++....... .....|.++...++|. +..|+.++-|..|+..+.......... -....|.++...++|.
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~- 369 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN- 369 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-
Confidence 664432211 1223689999998876 455667777889987665433221111 0123588888888886
Q ss_pred EEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccC
Q 001176 644 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 723 (1132)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1132)
|..|+.++.|..|+..++ ... .+......
T Consensus 370 lWiGt~~~Gl~~~~~~~~-~~~-~~~~~~~~------------------------------------------------- 398 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQ-RFT-SYTLQEDE------------------------------------------------- 398 (795)
T ss_dssp EEEEESSSCEEEECTTTC-CEE-EECCC----------------------------------------------------
T ss_pred EEEEECCCCeEEEcCCCC-cEE-EEecCCCC-------------------------------------------------
Confidence 455788878888887655 111 11000000
Q ss_pred cCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccC
Q 001176 724 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 803 (1132)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 803 (1132)
.. . ......|.++...++|..|-+++.++.+..|+....+.
T Consensus 399 -------------------------------~~----~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 399 -------------------------------SA----R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp ------------------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred -------------------------------cc----c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence 00 0 00224578888888887455556655677776432211
Q ss_pred CCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeC------C
Q 001176 804 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS------P 877 (1132)
Q Consensus 804 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~------~ 877 (1132)
..+..... . -+ ...|.++...++|.+.+... +.+.+||..+++....... +
T Consensus 440 ------------~~~~~~~~--------~-l~-~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~ 496 (795)
T 4a2l_A 440 ------------ENFNQRNS--------Q-LV-NENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVV 496 (795)
T ss_dssp ------------EEECTTTS--------C-CS-CSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCC
T ss_pred ------------EEeecCCC--------C-cC-CCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccC
Confidence 00000000 0 02 45789999998888766655 5688999887655332211 2
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeec-------cccCCeeEEEEcCCCCEEEEEcCCCcEEEEEC
Q 001176 878 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-------GHQNRITGLAFSPTLNALVSSGADAQLCMWSI 950 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-------~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~ 950 (1132)
...|.++...+ ++.+.+ |+. +-|..||..+++. .+. .....|.++...++|.+.++.. . -|..||.
T Consensus 497 ~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~ 569 (795)
T 4a2l_A 497 SKQITTLFRDS-HKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNE 569 (795)
T ss_dssp CCCEEEEEECT-TCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEET
T ss_pred CceEEEEEECC-CCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECC
Confidence 35689999988 676665 444 5588999887765 221 2345799999999998776554 3 4888998
Q ss_pred CCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCC-CCe--EEEEEccCCC
Q 001176 951 DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALP-API--SSAIYSCDGL 1027 (1132)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~-~~i--~~i~~s~dg~ 1027 (1132)
.+++... .....+-. ...+.++...++|.+.+.+ ++.+..|+........+....+.. ..+ .++...++|.
T Consensus 570 ~~~~~~~---~~~~~gl~--~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~ 643 (795)
T 4a2l_A 570 KDKQIKR---YNTTNGLP--NNVVYGILEDSFGRLWLST-NRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQ 643 (795)
T ss_dssp TTTEEEE---ECGGGTCS--CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSC
T ss_pred CCCcEEE---eCCCCCCc--hhheEEEEECCCCCEEEEc-CCceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCe
Confidence 7654221 11112211 1457888889999876665 567888888655555554333322 233 5677788888
Q ss_pred EEEEEecCCcEEEEeCC
Q 001176 1028 LVYAGFCDGAIGVFDAE 1044 (1132)
Q Consensus 1028 ~las~~~dg~i~vwd~~ 1044 (1132)
+++ |+.+| +..++.+
T Consensus 644 l~~-g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 644 MYF-GGING-ITTFRPE 658 (795)
T ss_dssp EEE-EETTE-EEEECGG
T ss_pred EEE-ecCCc-eEEEcHH
Confidence 655 55566 4445543
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=1.9e-13 Score=148.14 Aligned_cols=245 Identities=11% Similarity=0.076 Sum_probs=178.5
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeee---ecccCCEEEEEEe-cCCCcEEEEEEcC-CCcEE
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---DAHVGGVNDIAFA-HPNKQLCIVTCGD-DKMIK 477 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l---~~h~~~v~~v~~s-~d~~~~~l~s~~~-dg~v~ 477 (1132)
++-..+.+++++++|+++++...++.|.+||.+ ++.+...... .+|...+.+++++ +++. ++++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 455678999999999988888889999999987 4433321110 1344678999995 6665 5555533 88999
Q ss_pred EEECCCCeEEEEecC-CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCeEEEEEEcCCCCEEE
Q 001176 478 VWDVVAGRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 478 vwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~ 554 (1132)
+|| .+++.+..+.. +...+.+++++++ +.++++...++.|.+||.. +.....+. .+...+..++++++|+.++
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCC--CCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 999 67877777643 4467889999774 4788888888999999965 33333433 3345789999999998776
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeecccc-CCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeeEEEEeCCCCCCCc
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTVDADGGLPAS 632 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1132)
+... ++.|++||. .++.+..+.... ...+..++++++|+.+++...++ .|.+||. +++.+..+..+.....+
T Consensus 180 ~~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 253 (286)
T 1q7f_A 180 SDNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQC 253 (286)
T ss_dssp EEGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCE
T ss_pred EECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcc
Confidence 6543 677999997 456666665432 12678899999998888777775 9999995 56666666654433346
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 633 PRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
.+++++|+|+++++ +.++.|++|+....
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 78999999987666 67999999987543
No 181
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.63 E-value=1.1e-09 Score=136.83 Aligned_cols=587 Identities=10% Similarity=0.066 Sum_probs=338.7
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
...|+++.-.++|.. =.|+.+| +..||-.. |+.|...... . ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~l--WigT~~G-L~ryDG~~--------f~~~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGNM--WFATYDG-VNKYDGYA--------FTVYQHNEDD----P--NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSCE--EEEETTE-EEEECSSC--------EEEECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCCE--EEeecCc-CcccCCCc--------eEEEeCCCCC----C--CcccccceeEEEECCCCCEEE-
Confidence 357999999999973 3455555 55666321 2222211000 0 001245799999999887654
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecccC----CEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCC-CCC-
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLEIDAHVG----GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-EAP- 496 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~----~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-~~~- 496 (1132)
|+.+| +..||..+++. . .+..... .|.++...++|. +.+ ++. +-|..||..+++......++ ...
T Consensus 104 gT~~G-l~~yd~~~~~f-~---~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIF-Q---NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEE-E---EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeE-E---eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcc
Confidence 44566 89999876532 2 1211111 288999888886 344 444 45899998776543211111 112
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
|.++..... + .+..++.++.+..|+..+....... ......|.++...+++.+.+... ..-+.+||..+++
T Consensus 175 i~~i~~d~~--g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQG--D-QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEET--T-EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTTE
T ss_pred eEEEEECCC--C-CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCCe
Confidence 777776543 2 4555666666888987765433221 12345788888888887665442 2228999988765
Q ss_pred eeeeecc------ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC-----CCCCCcceEEEcCCCCEE
Q 001176 576 IKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRFNKEGSLL 644 (1132)
Q Consensus 576 ~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l 644 (1132)
....... .....|.++...++|...+ |+.+ -|.+||..+++........ -....|.++...++|. |
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-l 323 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-M 323 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-E
T ss_pred EEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-E
Confidence 4332211 1123688998888887554 4444 5889998877654432211 1123688898888887 4
Q ss_pred EEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCc
Q 001176 645 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 724 (1132)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1132)
..|+.++.|..|+..++ . +..+.....
T Consensus 324 Wigt~~~Gl~~~~~~~~-~-~~~~~~~~~--------------------------------------------------- 350 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRN-R-FKNIRNIPY--------------------------------------------------- 350 (795)
T ss_dssp EEEESSSCEEEECGGGG-S-SEEECCCTT---------------------------------------------------
T ss_pred EEEECCCCeEEeCCCcc-c-ceEEcCCCC---------------------------------------------------
Confidence 55777778888876544 1 111110000
Q ss_pred CCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCC
Q 001176 725 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 804 (1132)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~ 804 (1132)
+.......|.++...++|. |-+++.++-+..|+.....+.
T Consensus 351 ---------------------------------------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~ 390 (795)
T 4a2l_A 351 ---------------------------------------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFT 390 (795)
T ss_dssp ---------------------------------------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEE
T ss_pred ---------------------------------------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEE
Confidence 0000234577888888877 444566656777754321110
Q ss_pred CCCccccccccccccCCCcCcccccCC-CCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEee----CCC
Q 001176 805 PSGKATANVAPQLWQPPSGTLMTNDIN-ESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM----SPP 878 (1132)
Q Consensus 805 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~----~~~ 878 (1132)
.+...... .. + -. ...|.+++..++|+.|..|. ++.|..||..+++...... .+.
T Consensus 391 ------------~~~~~~~~-----~~~~-l~-~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~ 451 (795)
T 4a2l_A 391 ------------SYTLQEDE-----SARG-IG-SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVN 451 (795)
T ss_dssp ------------EECCC-----------C-CS-CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSC
T ss_pred ------------EEecCCCC-----cccC-CC-CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCC
Confidence 00000000 00 0 01 45789999999998444455 6789999998876533321 134
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeec------cccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCC
Q 001176 879 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 879 ~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~------~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~ 952 (1132)
..|.++...+ ++.+.+ |+.+ -+.+||..+++...... .....|.++...++|.+.+... + -|..|+..+
T Consensus 452 ~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~ 526 (795)
T 4a2l_A 452 ENVYAILPDG-EGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEG 526 (795)
T ss_dssp SCEEEEEECS-SSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEET
T ss_pred CeeEEEEECC-CCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCC
Confidence 5789999888 676554 4454 58899988776433221 1235799999999998777555 4 488899876
Q ss_pred cccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCC-CCCeEEEEEccCCCEEEE
Q 001176 953 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYA 1031 (1132)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h-~~~i~~i~~s~dg~~las 1031 (1132)
+.. . ..........+...+.++...++|...+.+.+ .+..||........+....+. ...|.++...++|.+.++
T Consensus 527 ~~~-~--~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~ 602 (795)
T 4a2l_A 527 LDI-Q--KASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLS 602 (795)
T ss_dssp TEE-E--ECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEE
T ss_pred CeE-E--EecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEE
Confidence 543 1 11000000011146788999999987666554 788899855555444332222 346899999999987665
Q ss_pred EecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1032 GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1032 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
+ ++-|..|+..+++.. .+.....++. .....-++...+ +|. |..|+.+| +..++...
T Consensus 603 t--~~Gl~~~~~~~~~~~-~~~~~dGl~~-----~~f~~~~~~~~~-~G~-l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 603 T--NRGISCFNPETEKFR-NFTESDGLQS-----NQFNTASYCRTS-VGQ-MYFGGING-ITTFRPEL 659 (795)
T ss_dssp E--TTEEEEEETTTTEEE-EECGGGTCSC-----SCEEEEEEEECT-TSC-EEEEETTE-EEEECGGG
T ss_pred c--CCceEEEcCCCCcEE-EcCCcCCCcc-----ccCccCceeECC-CCe-EEEecCCc-eEEEcHHH
Confidence 4 356888998876543 3332222221 111113455555 554 55566666 44556543
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=2.5e-13 Score=167.71 Aligned_cols=250 Identities=8% Similarity=0.008 Sum_probs=177.2
Q ss_pred CCCCcCeEEEEEcCCCCeEEEEeCCC-----eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc-
Q 001176 402 NDAAISVNRCVWGPDGLMLGVAFSKH-----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM- 475 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las~~~dg-----~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~- 475 (1132)
.+|...+..++|||||++||.+..++ .|++||+.+++.... .+. ...+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~--~~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc--CcccceEEEEeCCC--EEEEEEECCcc
Confidence 34556789999999999999876543 899999999875542 222 22367899999999 6777776665
Q ss_pred ---------------EEEEECCCCeE----EEEecCCCCCeEEEEeeccCCccEEEEEec-----CCeEEEEEcCC----
Q 001176 476 ---------------IKVWDVVAGRK----QYTFEGHEAPVYSVCPHHKESIQFIFSTAI-----DGKIKAWLYDY---- 527 (1132)
Q Consensus 476 ---------------v~vwd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-----dg~i~~wd~~~---- 527 (1132)
|++|++.+++. +.....|...+..+.|+|++ .+|+.++. +..|++||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG--RYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC--CEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999988762 22333356667888887754 77777664 57899999986
Q ss_pred --CC-ceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce--eeeeccccC-CceEEEEEeCCCCEEE
Q 001176 528 --LG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRK-RSLGVVQFDTTRNRFL 601 (1132)
Q Consensus 528 --~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~ 601 (1132)
+. ....+..+...+.. .|+++|+.|+..+........|.+||+.++.. ...+..+.. ..+..++|++++..++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 42 34455555444444 58899998887764333366899999987642 244444433 2577888987777777
Q ss_pred EEEcCCe--EEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC----CCcEEEEEcCCcc
Q 001176 602 AAGDEFQ--IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDGV 662 (1132)
Q Consensus 602 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 662 (1132)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++.... .+.|..||+.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7888874 667787778777777765 336788899999876664432 4789999998873
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=2.3e-13 Score=151.26 Aligned_cols=271 Identities=11% Similarity=0.075 Sum_probs=187.5
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
..|.++.|+|++.. ++..+.++.++.|. ++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 45788899998874 55556788888882 222211 33466678999999999988888
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC----CcEEEEECCCCeEEEEec--CCCCCe
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFE--GHEAPV 497 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~--~h~~~v 497 (1132)
..++.|.+||.++++... ....+...+.+++|+++|+ ++++...+ +.|.+||..+++....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998876433 1224567899999999998 67776666 689999988877653443 245678
Q ss_pred EEEEeeccCCccEEEEEec------CCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeC
Q 001176 498 YSVCPHHKESIQFIFSTAI------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 571 (1132)
.+++++++ |.++++... .+.|..||....... .+......+..++|+|+|+.++.+.. .++.|++||.
T Consensus 138 ~~i~~d~~--g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDSK--GGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECTT--SCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECCC--CCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 89999774 466666553 245555655443332 22222345788999999997766542 2567999998
Q ss_pred CC-Cceeee--------eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCC----CCCcceEEEc
Q 001176 572 SE-GAIKRT--------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG----LPASPRLRFN 638 (1132)
Q Consensus 572 ~~-~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s 638 (1132)
.+ +..+.. +.++ ..+..++++++|+.+++...++.|.+||. +++.+..+..+.. ...+.+++|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~ 288 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFI 288 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred cCCCcCcccccceEEEecCCC--CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEEC
Confidence 63 333221 1121 25778999999998887778899999998 5666666654321 1147899999
Q ss_pred CCCCEEEEEeCCC
Q 001176 639 KEGSLLAVTTSDN 651 (1132)
Q Consensus 639 ~~~~~l~~~~~dg 651 (1132)
+|+..|++++.++
T Consensus 289 ~dg~~L~v~~~~g 301 (333)
T 2dg1_A 289 PGTNQLIICSNDI 301 (333)
T ss_dssp TTSCEEEEEEECG
T ss_pred CCCCEEEEEeCcc
Confidence 9988777666653
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.59 E-value=3.7e-13 Score=149.64 Aligned_cols=273 Identities=13% Similarity=0.079 Sum_probs=185.3
Q ss_pred cceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC
Q 001176 770 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 849 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg 849 (1132)
..|.+++|++++..++..+.++.++.|.-. .... +.. + ...+.+++|+++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~-~~~--~-~~~~~~~~~~~~g 56 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-------------------------PWLE-ISK--K-GLQLEGLNFDRQG 56 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------EEEE-EES--S-CCCEEEEEECTTS
T ss_pred cccceeeecCCccceeEEeecccCcccccc-------------------------eeEE-Eec--c-CccccCcEECCCC
Confidence 456778899998888877778888877211 0000 111 2 4557899999999
Q ss_pred CEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCC----CcEEEEEcccceeeeeec--cccC
Q 001176 850 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVDEVKTKLK--GHQN 922 (1132)
Q Consensus 850 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~~~~~~l~--~h~~ 922 (1132)
++++++. ++.|.+||..+++.......+...+.+++++| +++++++...+ +.|.+||..+++....+. .+..
T Consensus 57 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 135 (333)
T 2dg1_A 57 QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY 135 (333)
T ss_dssp CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred CEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC
Confidence 9877776 78999999998877665545677899999999 78888777666 689999988776543332 3455
Q ss_pred CeeEEEEcCCCCEEEEEcC------CCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE--eCCeE
Q 001176 923 RITGLAFSPTLNALVSSGA------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQI 994 (1132)
Q Consensus 923 ~V~~l~~spdg~~l~s~~~------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v 994 (1132)
.+.+++++|+|+++++... .+.|..|+..+++... ..... ..+..++|+|||++++++ .++.|
T Consensus 136 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i 206 (333)
T 2dg1_A 136 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKVLWVTETTANRL 206 (333)
T ss_dssp CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eecCC-------CcccceEECCCCCEEEEEeCCCCeE
Confidence 7899999999998887764 2456666655443211 11110 235789999999977664 36899
Q ss_pred EEEeC--CCCceeec-----CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCC
Q 001176 995 SVYDS--KLECSRSW-----SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNT 1067 (1132)
Q Consensus 995 ~vwd~--~~~~~~~~-----~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1132)
.+||. .+.....+ ....+ ...+..++++++|+++++...++.|.+||.. ++.+..+.... ...+|.
T Consensus 207 ~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~-----~~~g~~ 279 (333)
T 2dg1_A 207 HRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPG-----RDEGHM 279 (333)
T ss_dssp EEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTT-----GGGTCS
T ss_pred EEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCC-----Cccccc
Confidence 99998 33333211 11111 1467889999999988888778999999984 66655543110 001333
Q ss_pred CCcEEEEeCCCCCCeEEEEeCC
Q 001176 1068 AHPLVIAPHPSEPNQIALGMSD 1089 (1132)
Q Consensus 1068 ~~v~~~~~~p~~~~~l~s~~~D 1089 (1132)
..+.+++|+| +++.|+.++.+
T Consensus 280 ~~~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 280 LRSTHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp CBCCEEEECT-TSCEEEEEEEC
T ss_pred cCcceEEECC-CCCEEEEEeCc
Confidence 3678899998 66666655555
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=3.9e-13 Score=165.88 Aligned_cols=247 Identities=9% Similarity=-0.011 Sum_probs=171.2
Q ss_pred CCeeEEEEccCCCeEEEEEcCCC----cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCe
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 419 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 419 (1132)
..+.+++|||||++++++.+.+| .|++||+.+++.+.. . + ....+..++|||||+.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wspDg~~ 184 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHDGKG 184 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTTSSE
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEeCCCE
Confidence 46889999999996554444333 899999999876531 0 1 1123668999999999
Q ss_pred EEEEeCCCe----------------EEEEEecCCCce-eeeeeeecccCCEEEEEEecCCCcEEEEEEcC-----CCcEE
Q 001176 420 LGVAFSKHI----------------VHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKMIK 477 (1132)
Q Consensus 420 las~~~dg~----------------i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-----dg~v~ 477 (1132)
|+.++.++. |++|++.++... ........|...+..+.|+|||+ +|+.++. +..|+
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~~l~ 262 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR--YVLLSIREGCDPVNRLW 262 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECSSSSCCEEE
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC--EEEEEEEccCCCccEEE
Confidence 999988765 999999886532 11112223556688999999999 4554432 67899
Q ss_pred EEECCC------Ce-EEEEecCCCCCeEEEEeeccCCccEEEEEec----CCeEEEEEcCCCCc--eEEecCCCC--eEE
Q 001176 478 VWDVVA------GR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYLGS--RVDYDAPGN--WCT 542 (1132)
Q Consensus 478 vwd~~~------~~-~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~----dg~i~~wd~~~~~~--~~~~~~~~~--~v~ 542 (1132)
+||+.+ +. ....+..+...+.. .|++++ ..|+..+. .+.|.+||+.+... ...+..+.. .+.
T Consensus 263 ~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 263 YCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEG--TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE 339 (710)
T ss_dssp EEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEET--TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE
T ss_pred EEECcccccccCCccceEEeeCCCCcEEE-EEeccC--CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE
Confidence 999986 53 35666667666655 366644 55554443 23699999987652 233333433 788
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE----cCCeEEEEECCCCe
Q 001176 543 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN 618 (1132)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~ 618 (1132)
.++|++++.++++... ++...|++||+.+|+.+..+..+.. .+..++++|+++.++... ..+.|+.||+.+++
T Consensus 340 ~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 340 WVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCCc-eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8999877766666654 3345688899878887777777643 788899999987766542 45789999998877
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.56 E-value=2e-12 Score=144.68 Aligned_cols=256 Identities=10% Similarity=0.126 Sum_probs=167.4
Q ss_pred CCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCC-CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC
Q 001176 517 DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 517 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
++.|.+||+.++.... + ..+..++|||||++|+..+... ++...|++||+.+++......... +..++|+|
T Consensus 42 ~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~wsp 113 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN---IRSLEWNE 113 (347)
T ss_dssp EEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE---EEEEEECT
T ss_pred cceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC---ccceeECC
Confidence 6779999998765433 3 4578899999999999876422 134468999998887655444322 88899999
Q ss_pred CCCEEEEEEcC---------------------------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe
Q 001176 596 TRNRFLAAGDE---------------------------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 648 (1132)
Q Consensus 596 ~~~~l~~~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1132)
+|+.|+.++.+ ..|++||+.+++.+..+.. . .+..++|+||| +++++.
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTE-EEEEEE
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCe-EEEEEe
Confidence 99999887642 5799999999887455543 1 57899999999 777776
Q ss_pred CCC-------cEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCc
Q 001176 649 SDN-------GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 721 (1132)
Q Consensus 649 ~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1132)
.++ ...+|.+.++ +.
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~-~~--------------------------------------------------------- 210 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDG-KE--------------------------------------------------------- 210 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETT-EE---------------------------------------------------------
T ss_pred cccccccccccccEEEeCCC-ce---------------------------------------------------------
Confidence 542 2233332222 10
Q ss_pred cCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccc--------ee
Q 001176 722 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA--------VH 793 (1132)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg--------~i 793 (1132)
..+. . + ..+..+ +|||+.|+..+.++ .|
T Consensus 211 -------------------------------------~~l~--~--~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l 246 (347)
T 2gop_A 211 -------------------------------------EKMF--E--K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKL 246 (347)
T ss_dssp -------------------------------------EEEE--E--E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEE
T ss_pred -------------------------------------EEec--c--C-cceeeE--CCCCCEEEEEEccccCCccccceE
Confidence 0000 0 1 122333 89999887776543 33
Q ss_pred EEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE-EEEeeCCCEEEEee-CCeEEEEECCCCeEE
Q 001176 794 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC-IALSKNDSYVMSAS-GGKVSLFNMMTFKVM 871 (1132)
Q Consensus 794 ~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~-~~~s~dg~~la~~s-dg~i~vwd~~~~~~~ 871 (1132)
.+| + ++.... ...+ + ...+.. ++|+ |+ ++++++ ++.++|| +.+++..
T Consensus 247 ~~~----------------------d--~~~~~~-l~~~--~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~ 295 (347)
T 2gop_A 247 YIY----------------------D--GKEVMG-ILDE--V-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK 295 (347)
T ss_dssp EEE----------------------C--SSCEEE-SSTT--C-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE
T ss_pred EEE----------------------C--CCceEe-cccc--C-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE
Confidence 333 2 222111 1122 3 556775 8999 88 777777 8999999 8766654
Q ss_pred EEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcE-EEEEcccceeeeeeccccCCe
Q 001176 872 TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSV-QIYNVRVDEVKTKLKGHQNRI 924 (1132)
Q Consensus 872 ~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v-~iwd~~~~~~~~~l~~h~~~V 924 (1132)
. +..+...|.+++|+| .++++++.++.. .||.+. ++ ...+..|...+
T Consensus 296 ~-~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~~ 343 (347)
T 2gop_A 296 P-IAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD-GE-EKQLTDYNDPI 343 (347)
T ss_dssp E-EECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES-SS-EEECCCTTSTT
T ss_pred E-EecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC-Cc-EEEeccccHhH
Confidence 4 444577899999987 577777777765 777776 54 45566665543
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=2.1e-13 Score=167.73 Aligned_cols=247 Identities=11% Similarity=-0.034 Sum_probs=168.0
Q ss_pred CCCCcCeEEEEEcCCCCeEEE-----EeCCCeEEEEEecCCCceeeeeeeecccCCE--EEEEEecCCCcEEEEEEcCCC
Q 001176 402 NDAAISVNRCVWGPDGLMLGV-----AFSKHIVHLYTYNPTGELRQHLEIDAHVGGV--NDIAFAHPNKQLCIVTCGDDK 474 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~~las-----~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v--~~v~~s~d~~~~~l~s~~~dg 474 (1132)
.+|...+..++|||||++||. |+.+.+|++||+.+++.+. ..+...+ ..++|+|||+ .|+.++.|.
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-----~~~~~~~~~~~~~wspDg~--~l~~~~~d~ 189 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-----VDVIEGGKYATPKWTPDSK--GFYYEWLPT 189 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-----SCCBSCCTTCCCEECTTSS--EEEEEECCC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-----CcccCcccccceEEecCCC--EEEEEEecC
Confidence 356778999999999999994 3445789999999987541 1122222 6899999999 678887776
Q ss_pred c-------------EEEEECCCCe----EEEEecCCCCCeEEEEeeccCCccEEEEEecCC----eEEEEEcCCCCceEE
Q 001176 475 M-------------IKVWDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG----KIKAWLYDYLGSRVD 533 (1132)
Q Consensus 475 ~-------------v~vwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg----~i~~wd~~~~~~~~~ 533 (1132)
. |++|++.++. .+.....|...+.++.|+|++ ++|+.++.++ .|.+|+..++. ...
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~l~~~~~~~~~-~~~ 266 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG--KYLFVYILRGWSENDVYWKRPGEKD-FRL 266 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS--CCEEEEEEETTTEEEEEEECTTCSS-CEE
T ss_pred CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC--CEEEEEEeCCCCceEEEEEcCCCCc-eEE
Confidence 6 9999998876 344444566788899998755 7777776665 56666654443 334
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce---eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEE
Q 001176 534 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIK 610 (1132)
Q Consensus 534 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 610 (1132)
+..+...+....+ ++|+ ++..+.....++.|++||+.++.. ...+..+....+..++|+ ++..+++...|+..+
T Consensus 267 l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 267 LVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp EEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred eecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 4444445555556 6677 555443222468899999987753 333333323357788888 566777788899888
Q ss_pred EEECC-CCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC----CCcEEEEEcCCcc
Q 001176 611 FWDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDGV 662 (1132)
Q Consensus 611 iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 662 (1132)
+|.+. +++....+..+. ...+..++++|+++.++.... .++|++||+.++.
T Consensus 344 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88654 455555555432 235778889999987774433 4789999998873
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.56 E-value=8.3e-13 Score=143.87 Aligned_cols=241 Identities=7% Similarity=-0.019 Sum_probs=172.8
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+.....+++|+|+|+.+++++..++.|..|+..++ . .. +..+...+.+++++|+|++++
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~-------------------~~~~~~~~~~l~~~~dg~l~v 84 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SP-------------------EMHPSHHQNGHCLNKQGHLIA 84 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EE-------------------EESSCSSEEEEEECTTCCEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EE-------------------EECCCCCcceeeECCCCcEEE
Confidence 55678899999999877889999999999999876 2 21 233567799999999999888
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeec-ccCCEEEEEEecCCCcEEEEEE----c-------------CCCcEEEEECCC
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTC----G-------------DDKMIKVWDVVA 483 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~----~-------------~dg~v~vwd~~~ 483 (1132)
+...++.|.+||..+++.........+ ....+.+++++|+|+ ++++. + ..+.|..++..
T Consensus 85 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 85 CSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 877788999999987764322111111 123567899999998 67763 2 13456666654
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC-CCc---eEEecCCCCeEEEEEEcCCCCEEEEEecC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGS---RVDYDAPGNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
++ ...+..+......++|+|++ ..+++.+.++.|.+|++.. +.. ...+......+..++++++|++.++.
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~dg--~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--- 235 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLPSG--NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--- 235 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECTTS--CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---
T ss_pred CC-EEEeecCCCCCccEEECCCC--CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---
Confidence 44 34455667778999997754 6678888889999999973 332 12333344566789999999876665
Q ss_pred CCCCCeEEEEeCCCCceeeeeccccCCceEEEEE-eCCCCEEEEEEcCCeEEEEECCCCee
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-DTTRNRFLAAGDEFQIKFWDMDNMNM 619 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1132)
++.|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+..++..+.+.
T Consensus 236 ---~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 ---GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ---TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ---CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 3459999986 777777776554 788889 5888888888765 455666665543
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=8.3e-13 Score=145.76 Aligned_cols=278 Identities=12% Similarity=-0.001 Sum_probs=189.9
Q ss_pred CCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeee
Q 001176 364 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 443 (1132)
Q Consensus 364 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~ 443 (1132)
.+++|.+||..+++..... +.. .. -.........+++. +++++++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i----~~~--------~n-~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEV----FYR--------AN-GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSH----HHH--------HH-SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhh----Hhh--------hc-CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 4789999999998765320 000 00 01122446677774 455566666789999999999887653
Q ss_pred eeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCC-----CCeEEEEeeccCCccEEEEEe-cC
Q 001176 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-----APVYSVCPHHKESIQFIFSTA-ID 517 (1132)
Q Consensus 444 ~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~s-~d 517 (1132)
+. .......++++++++ ++++...++.|.+||..+++....+.... .....+++ . ++.++++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 32 345788999999985 56666579999999999999887776433 14556666 2 224444443 48
Q ss_pred CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC------CCeEEEEeCCCCceeeeeccccCCceEEE
Q 001176 518 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG------ESHLVEWNESEGAIKRTYSGFRKRSLGVV 591 (1132)
Q Consensus 518 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 591 (1132)
+.|.+||..+.+....+... .....++++|+|++++++..+.+. .+.|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 99999999988766665543 345688999999977766421100 26899999999988877764333357889
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC-CCCEEEEE----eCCCcEEEEEcCCcceeee
Q 001176 592 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVT----TSDNGIKILANSDGVRLLR 666 (1132)
Q Consensus 592 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~----~~dg~i~iw~~~~~~~~~~ 666 (1132)
+|+|++++++++.. .|.+||..+++................++++| ++.+.++. ..++.|.+||.. + +...
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~~ 306 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLID 306 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEEE
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEEE
Confidence 99999999988754 89999998877532111111123578899999 55555555 568899999987 6 4555
Q ss_pred ecc
Q 001176 667 MLE 669 (1132)
Q Consensus 667 ~~~ 669 (1132)
.+.
T Consensus 307 ~i~ 309 (328)
T 3dsm_A 307 EFY 309 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=2.1e-11 Score=132.88 Aligned_cols=282 Identities=9% Similarity=-0.040 Sum_probs=194.0
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
+...+.+++++++|+ ++++...++.|.+||.. ++.... . ...+...+.+++++++|++++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------~------------~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------P------------LPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------E------------CSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------c------------CCcccCceeeEEECCCCCEEE
Confidence 446899999999998 56666667899999987 543210 0 112446799999999999888
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE-EecCCCCCeEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSV 500 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~i 500 (1132)
+...++.|..||.. ++ .... .+......+.++++.++|. ++++...++.|.+||. +++... .+..+...+.++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 87778899999976 33 2211 2223455789999999998 7777777889999998 665443 233345678888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeee
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
++.++ +.+.++...++.|..||. ++..... .......+..+++.++|+..++.. ..+.|.+||. +++....
T Consensus 147 ~~~~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~g~~~~~ 218 (299)
T 2z2n_A 147 TLGSD--NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT-SGEITEF 218 (299)
T ss_dssp EECTT--SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEE
T ss_pred EEcCC--CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC-CCcEEEE
Confidence 88654 467777777889999998 4443322 333445788999999998666543 2567999998 6664332
Q ss_pred eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 580 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
........+..++++++|+.+++...++.|..||. +++ +..+........+.++++ ++|.+.++.. .+.+..++..
T Consensus 219 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence 11112236889999999986665557889999998 454 334433333346889999 8887666554 5677777766
Q ss_pred Cc
Q 001176 660 DG 661 (1132)
Q Consensus 660 ~~ 661 (1132)
++
T Consensus 295 ~~ 296 (299)
T 2z2n_A 295 KD 296 (299)
T ss_dssp --
T ss_pred cc
Confidence 54
No 191
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=2.5e-08 Score=124.25 Aligned_cols=595 Identities=12% Similarity=0.098 Sum_probs=337.2
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
...|+++.-.++|.. =.|+.+| +..||-.. |+.+..... +... ..-....|.++...++|..|-.
T Consensus 18 ~n~V~~I~qD~~G~l--WigT~~G-L~ryDG~~--------f~~~~~~~~--~~~~--~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGFL--WFATEEG-LNKFDGTR--------FITYYKEEQ--SSSV--QSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSCE--EEEESSC-EEEECSSS--------EEEECCCSS--CSSS--CCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCCE--EEccCCc-CccccCCc--------eEEEEcCCC--CCcc--ccccccccceEEEcCCCCEEEE
Confidence 357999999999973 3445555 66676332 222221000 0000 0012346999999888884556
Q ss_pred EeCCCeEEEEEecCCCceeeeee-eec---ccCCEEEEEEec--CCCcEEEEEEcCCCcEEEEECCCCeEEEEecC----
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLE-IDA---HVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG---- 492 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~-l~~---h~~~v~~v~~s~--d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~---- 492 (1132)
|+.++-+..||..+++....... ... ....|.++.... ++. |..++.++-|..+|..+++... +..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~-~~~~~~~ 158 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTH-YNKSTVP 158 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEE-ESTTTCT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEe-eccCccc
Confidence 77774599999887542211000 000 123688888877 665 4556545568899987776543 321
Q ss_pred --CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 493 --HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 493 --h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
....|.++..... ..|..++.++.+..||..+....... ......|.++...++|.+.+... .
T Consensus 159 ~l~~~~i~~i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~ 230 (781)
T 3v9f_A 159 ALPSEQTWTATEAED---GKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K 230 (781)
T ss_dssp TCSCCCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T
T ss_pred CCCccceEEEEECCC---CCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C
Confidence 1345777776443 34555777767888987764332211 11235789999988888766542 2
Q ss_pred CeEEEEeCCCCceeeeecc------ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe-------CC----
Q 001176 564 SHLVEWNESEGAIKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-------AD---- 626 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~---- 626 (1132)
-+.+||..+++....... .....|.++...++|. +..|+..+-|.++|..++....... ..
T Consensus 231 -Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 308 (781)
T 3v9f_A 231 -GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNY 308 (781)
T ss_dssp -EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTT
T ss_pred -cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCC
Confidence 489999877654322111 1223688888887775 5556664668889987765432211 00
Q ss_pred -CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccC
Q 001176 627 -GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 705 (1132)
Q Consensus 627 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 705 (1132)
-....|.++...++|. |..|+.++.|..++..++ . +..+......
T Consensus 309 ~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~-~-~~~~~~~~~~------------------------------- 354 (781)
T 3v9f_A 309 SLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPP-T-FHTWSYSPTQ------------------------------- 354 (781)
T ss_dssp SBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCC-S-CEEEC----C-------------------------------
T ss_pred CCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCC-c-ceeeccCccc-------------------------------
Confidence 1123578888888886 556777777888876544 1 1111000000
Q ss_pred CCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEE
Q 001176 706 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLL 785 (1132)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 785 (1132)
. .+.......|.++...++|. |-
T Consensus 355 ---------------------------------------------~-----------~~~~l~~~~v~~i~~d~~g~-lW 377 (781)
T 3v9f_A 355 ---------------------------------------------M-----------NESSLSNKVVSSVCDDGQGK-LW 377 (781)
T ss_dssp ---------------------------------------------C-----------CSSCCSSSCEEEEEECTTSC-EE
T ss_pred ---------------------------------------------c-----------ccCCCCCcceEEEEEcCCCC-EE
Confidence 0 00000234577888888777 44
Q ss_pred eecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEEC
Q 001176 786 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNM 865 (1132)
Q Consensus 786 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~ 865 (1132)
.++.++-+..|+...... ..+. . ..... ...|.+++..++|.+.+...++.+..+|.
T Consensus 378 igt~~~Gl~~~~~~~~~~------------~~~~-~---------~~~~~-~~~v~~i~~d~~g~lWigt~~~Gl~~~~~ 434 (781)
T 3v9f_A 378 IGTDGGGINVFENGKRVA------------IYNK-E---------NRELL-SNSVLCSLKDSEGNLWFGTYLGNISYYNT 434 (781)
T ss_dssp EEEBSSCEEEEETTEEEE------------ECC---------------CC-CSBEEEEEECTTSCEEEEETTEEEEEECS
T ss_pred EEeCCCcEEEEECCCCeE------------EEcc-C---------CCCCC-CcceEEEEECCCCCEEEEeccCCEEEEcC
Confidence 455455566665432111 0000 0 00002 56789999888888777544678999998
Q ss_pred CCCeEEEEee--CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccc-----cCCeeEEEEcCCCCEEEE
Q 001176 866 MTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH-----QNRITGLAFSPTLNALVS 938 (1132)
Q Consensus 866 ~~~~~~~~~~--~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~spdg~~l~s 938 (1132)
.+++...... .....|.++...+ ++.+.+ |+. +-|..||..+++........ ...|.++...++|.+.+.
T Consensus 435 ~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 511 (781)
T 3v9f_A 435 RLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG 511 (781)
T ss_dssp SSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred CCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE
Confidence 7766433221 1346789999887 666554 555 45889998876543322212 457999999999987775
Q ss_pred EcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCC-CCCe
Q 001176 939 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL-PAPI 1017 (1132)
Q Consensus 939 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h-~~~i 1017 (1132)
...+| |..|+..+++... .....+ .+...|.++...++|...+.+.+|-+..||........+....+. ...|
T Consensus 512 t~~~G-l~~~~~~~~~~~~---~~~~~~--l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i 585 (781)
T 3v9f_A 512 TFGGG-VGIYTPDMQLVRK---FNQYEG--FCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHI 585 (781)
T ss_dssp ESSSC-EEEECTTCCEEEE---ECTTTT--CSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCC
T ss_pred EcCCC-EEEEeCCCCeEEE---ccCCCC--CCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceE
Confidence 54455 7788887654211 111111 112567889999999877776655448898854444444322221 3468
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 001176 1018 SSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1097 (1132)
Q Consensus 1018 ~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~ 1097 (1132)
.++...++|.+.++ +..| |..++..+++. ..+.....++. ..-..-++...+ +|. |..|+.+| +..++.
T Consensus 586 ~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~-~~~~~~dGl~~-----~~f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p 654 (781)
T 3v9f_A 586 RAISEDKNGNIWAS-TNTG-ISCYITSKKCF-YTYDHSNNIPQ-----GSFISGCVTKDH-NGL-IYFGSING-LCFFNP 654 (781)
T ss_dssp CEEEECSSSCEEEE-CSSC-EEEEETTTTEE-EEECGGGTCCS-----SCEEEEEEEECT-TSC-EEEEETTE-EEEECS
T ss_pred EEEEECCCCCEEEE-cCCc-eEEEECCCCce-EEecccCCccc-----cccccCceEECC-CCE-EEEECCCc-eEEECh
Confidence 89999999986654 4444 78888886654 23332221221 111122455555 554 55566677 555676
Q ss_pred CCC
Q 001176 1098 SDA 1100 (1132)
Q Consensus 1098 ~~~ 1100 (1132)
..-
T Consensus 655 ~~~ 657 (781)
T 3v9f_A 655 DIA 657 (781)
T ss_dssp CCG
T ss_pred hhc
Confidence 543
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=5.7e-13 Score=142.23 Aligned_cols=252 Identities=12% Similarity=0.054 Sum_probs=186.8
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEEEeeCCC-CCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecccc-CCe
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRI 924 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V 924 (1132)
.++.|++++ ++.|.+||.++++.+.++..+. ..+.+++++| +|++++ +.++.|+.||. +++.+.++..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 457788887 8999999999999999998776 5789999999 899888 45778999998 899999888653 478
Q ss_pred eEEEEcCCCCEEEEEcC-CCcEEEEECCCcccccceeeeCC-CCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeCCC
Q 001176 925 TGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAP-AGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKL 1001 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~-D~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~ 1001 (1132)
.++.+.++|+++++.+. ++.|..++. +++.+....+... .++. .....+++.++|+++++. .++.|..||.++
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPNG 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTTS
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCCC
Confidence 89999999999999887 777777776 4443332222111 1111 234567889999999885 689999999988
Q ss_pred CceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCC
Q 001176 1002 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN 1081 (1132)
Q Consensus 1002 ~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 1081 (1132)
+.+..+... ....++.+.++|.++++++.++.|..+|..+|+.+.++.... .+ ......+..++..+ +++
T Consensus 156 ~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~----~~~l~~~~~~~~~~-~G~ 225 (276)
T 3no2_A 156 QLLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IE----GVQLFFVAQLFPLQ-NGG 225 (276)
T ss_dssp CEEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SB----SCCCSEEEEEEECT-TSC
T ss_pred CEEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CC----CccccccccceEcC-CCC
Confidence 777666432 345667888999999999888899999999999988775211 00 01234577888888 778
Q ss_pred eEEEEeCC--------CcEEEEec-CCCcccccCCCCCCCCCCCC
Q 001176 1082 QIALGMSD--------GAVHVVEP-SDAELKWGGTPSQDNGPLPS 1117 (1132)
Q Consensus 1082 ~l~s~~~D--------g~i~vW~~-~~~~~~~~~~~~~~~~~~~~ 1117 (1132)
++++.... +..++.++ .+++-.|......+-|.++.
T Consensus 226 i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 226 LYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp EEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred EEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence 88877421 23355666 57778888877777777664
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=1.5e-12 Score=141.71 Aligned_cols=237 Identities=13% Similarity=0.051 Sum_probs=169.1
Q ss_pred CCCCcCeEEEEEcCCCC-eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001176 402 NDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 480 (1132)
Q Consensus 402 ~~h~~~V~~v~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd 480 (1132)
..+.....+++|+|+|+ +++++..++.|..|+..++ .. .+..+...+.+++|+++|+ ++++...++.|.+||
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQR 96 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEEC
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEEc
Confidence 34556778999999998 7788888999999999886 33 3445677899999999998 777777778999999
Q ss_pred CCCCeEEEEecCC----CCCeEEEEeeccCCccEEEEEec-----------------CCeEEEEEcCCCCceEEecCCCC
Q 001176 481 VVAGRKQYTFEGH----EAPVYSVCPHHKESIQFIFSTAI-----------------DGKIKAWLYDYLGSRVDYDAPGN 539 (1132)
Q Consensus 481 ~~~~~~~~~~~~h----~~~v~~i~~~~~~~~~~l~s~s~-----------------dg~i~~wd~~~~~~~~~~~~~~~ 539 (1132)
..+++........ ...+..+++++ +|.++++.+. .+.|..++.. .....+.....
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~~ 172 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDRV 172 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCCS
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCCC
Confidence 9888765433221 23456788876 4577777321 2345555444 44445555566
Q ss_pred eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC-CCce---eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 001176 540 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 615 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1132)
....++|+|+|+.+++.+ .++.|++|++. +++. ...+ ......+..++++++|+.+++. ++.|.+||..
T Consensus 173 ~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp SEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred CCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 778999999999984443 36789999986 5554 3344 2223356779999999866655 8899999986
Q ss_pred CCeeEEEEeCCCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 616 NMNMLTTVDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
++.+..+..+.. +.+++| .++++.|++++.+ .+.-++..+.
T Consensus 246 -g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 246 -GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp -SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred -CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 777777765532 789999 5899999988876 3444455443
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=1.6e-12 Score=143.37 Aligned_cols=240 Identities=11% Similarity=0.053 Sum_probs=170.8
Q ss_pred CCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee
Q 001176 838 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 916 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 916 (1132)
.....+++. +++..++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 345677774 344444444 7999999999999988886 356789999998 676555554899999999999988777
Q ss_pred ecccc-----CCeeEEEEcCCCCEEEEEc-CCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEe
Q 001176 917 LKGHQ-----NRITGLAFSPTLNALVSSG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 990 (1132)
Q Consensus 917 l~~h~-----~~V~~l~~spdg~~l~s~~-~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 990 (1132)
+.... .....+++ .+++.+++.. .++.|.+||..+++...... . + .....++++|+|++++++.
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~--~--g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELT--I--G-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEE--C--S-----SCBCCCEECTTSEEEEEBC
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE--c--C-----CCccceEEcCCCCEEEEEC
Confidence 65433 14567787 4455555544 48899999999877543221 1 1 2346789999999777743
Q ss_pred -C----------CeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccc
Q 001176 991 -E----------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1058 (1132)
Q Consensus 991 -d----------~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1058 (1132)
+ +.|.++|. +++....+.... ......++|+||+++|+++.. .|.+||..+++...... .
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~----~ 262 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF----L 262 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS----B
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee----e
Confidence 3 68999999 455444443321 246889999999999988765 89999999887642110 1
Q ss_pred cccccCCCCCCcEEEEeCCCCCCeEEEE----eCCCcEEEEecCCCcccc
Q 001176 1059 PTYAVSSNTAHPLVIAPHPSEPNQIALG----MSDGAVHVVEPSDAELKW 1104 (1132)
Q Consensus 1059 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~----~~Dg~i~vW~~~~~~~~~ 1104 (1132)
+ .....+..++++|+++++.++. ..+++|.+||.. ++..+
T Consensus 263 ~-----~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 263 E-----FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID 306 (328)
T ss_dssp C-----CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred c-----CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence 1 1246788999999777777777 678999999998 77444
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.53 E-value=2.2e-12 Score=138.37 Aligned_cols=240 Identities=10% Similarity=0.027 Sum_probs=168.0
Q ss_pred CeeEEEEeeCCCEEE-Eee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee
Q 001176 839 SAACIALSKNDSYVM-SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 916 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la-~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 916 (1132)
...+++++++|++++ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|.+||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999999776 434 78999999866543322223345688999999 777666555 88999999876543322
Q ss_pred eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEE
Q 001176 917 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQIS 995 (1132)
Q Consensus 917 l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~ 995 (1132)
.......+.+++++++|+++++...++.|.+|+..+..... ..... ...+..++++++|+++++. .++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-----~~~~~---~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-----LPFTG---LNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-----CCCCS---CCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-----ecccc---CCCceeEEEeCCCCEEEEECCCCEEE
Confidence 22233568999999999988888888999999765533211 11111 1346789999999866664 468999
Q ss_pred EEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEe
Q 001176 996 VYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAP 1075 (1132)
Q Consensus 996 vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1075 (1132)
+||..+......... +...+..++++++|.++++...++.|.+|+..+..... +. ..+...+..+++
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~----------~~~~~~p~~i~~ 241 (270)
T 1rwi_B 175 KLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP----------FTGLNTPLAVAV 241 (270)
T ss_dssp EECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC----------CCSCSCEEEEEE
T ss_pred EEecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec----------cCCCCCceeEEE
Confidence 999955544333221 13678999999999888877778999999997654322 11 122256889999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCcc
Q 001176 1076 HPSEPNQIALGMSDGAVHVVEPSDAEL 1102 (1132)
Q Consensus 1076 ~p~~~~~l~s~~~Dg~i~vW~~~~~~~ 1102 (1132)
+| +++++++...+++|+++++...++
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCccc
Confidence 99 678999999999999999987663
No 196
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=8.5e-09 Score=128.51 Aligned_cols=541 Identities=10% Similarity=0.064 Sum_probs=311.8
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcC--CCCeEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLG 421 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~la 421 (1132)
..|.++...++|+. |-+|+.++.+..||..+++... +.... ... ..-....|.++.... +|.+.
T Consensus 66 n~I~~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~f~~------~~~~~----~~~--~~l~~~~i~~i~~d~~~~g~lw- 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPV-IWIATQRAGLNAYNYETQSFSV------YQYNP----EDP--QSLITNDVTHITSSVQAGKGLW- 131 (781)
T ss_dssp SCEEEEEECSSSSE-EEEEESSSCEEEEETTTTEEEE------ECCCT----TCS--SSCSCSCEEEEEECSSTTSEEE-
T ss_pred cccceEEEcCCCCE-EEEEeCCCCcceECCCCCeEEe------ecccc----CCC--CCcccCcceEEEecCccCCCEE-
Confidence 46999999998872 3345556579999988764321 10000 000 001234688888887 66644
Q ss_pred EEeCCCeEEEEEecCCCceeeeee--ee-cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecC------
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLE--ID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG------ 492 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~--l~-~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~------ 492 (1132)
.++.++-|..||..+++. ..... .. -....|.++...++|. |..|+.++-|..||..+++...-...
T Consensus 132 i~t~~~gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 207 (781)
T 3v9f_A 132 VCTYYRGIEYLDIATGKF-THYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNS 207 (781)
T ss_dssp EEESSSCEEEEETTTTEE-EEESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-------
T ss_pred EEECCCCeeEEECCCCeE-EeeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCccc
Confidence 455344488899876532 21100 00 1134688888888876 45566665688999887764321110
Q ss_pred -CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCeEEEEEEcCCCCEEEEEecCCCCCC
Q 001176 493 -HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGES 564 (1132)
Q Consensus 493 -h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1132)
....|.++.... ++. |..++.+ -+.+||..+....... ......|.++...++|.+.+... .+
T Consensus 208 l~~~~i~~i~~d~--~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~~ 278 (781)
T 3v9f_A 208 LPGNDVRCIYKDT--NGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE-----LN 278 (781)
T ss_dssp -CCSSEEEEEECT--TCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES-----SS
T ss_pred CCCCceeEEEEcC--CCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC-----CC
Confidence 135688877644 334 4445555 6888987654332211 12345789999988887655432 12
Q ss_pred eEEEEeCCCCceeeeec-------------cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe-------
Q 001176 565 HLVEWNESEGAIKRTYS-------------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD------- 624 (1132)
Q Consensus 565 ~i~~wd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------- 624 (1132)
-|.++|..++....... +.....|.++...++|. |..|+.++-|..++..+........
T Consensus 279 Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 357 (781)
T 3v9f_A 279 GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNE 357 (781)
T ss_dssp CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCS
T ss_pred CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccccc
Confidence 38889987665322111 11233688898888876 5556667778899887654332211
Q ss_pred CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCcccccccc
Q 001176 625 ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIA 704 (1132)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 704 (1132)
..-....|.++...++|. |..|+.++.|..|+..++ . +..+....
T Consensus 358 ~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~-~-~~~~~~~~-------------------------------- 402 (781)
T 3v9f_A 358 SSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKR-V-AIYNKENR-------------------------------- 402 (781)
T ss_dssp SCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEE-E-EECC------------------------------------
T ss_pred CCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCC-e-EEEccCCC--------------------------------
Confidence 111123578888888776 456776777888887544 1 11110000
Q ss_pred CCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceE
Q 001176 705 PTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSL 784 (1132)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 784 (1132)
......|.++...++|...
T Consensus 403 -------------------------------------------------------------~~~~~~v~~i~~d~~g~lW 421 (781)
T 3v9f_A 403 -------------------------------------------------------------ELLSNSVLCSLKDSEGNLW 421 (781)
T ss_dssp --------------------------------------------------------------CCCSBEEEEEECTTSCEE
T ss_pred -------------------------------------------------------------CCCCcceEEEEECCCCCEE
Confidence 0023457778777777744
Q ss_pred EeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEE
Q 001176 785 LALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFN 864 (1132)
Q Consensus 785 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd 864 (1132)
+ ++.++.+..++.. ++......... .. ...|.++...++|.+.+... +.|..||
T Consensus 422 i-gt~~~Gl~~~~~~----------------------~~~~~~~~~~~-~~-~~~v~~i~~d~~g~lwigt~-~Gl~~~~ 475 (781)
T 3v9f_A 422 F-GTYLGNISYYNTR----------------------LKKFQIIELEK-NE-LLDVRVFYEDKNKKIWIGTH-AGVFVID 475 (781)
T ss_dssp E-EETTEEEEEECSS----------------------SCEEEECCSTT-TC-CCCEEEEEECTTSEEEEEET-TEEEEEE
T ss_pred E-EeccCCEEEEcCC----------------------CCcEEEeccCC-CC-CCeEEEEEECCCCCEEEEEC-CceEEEe
Confidence 4 5554456666432 22111110000 02 56789999888887665544 6799999
Q ss_pred CCCCeEEEEeeCC-----CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecc---ccCCeeEEEEcCCCCEE
Q 001176 865 MMTFKVMTMFMSP-----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG---HQNRITGLAFSPTLNAL 936 (1132)
Q Consensus 865 ~~~~~~~~~~~~~-----~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l 936 (1132)
..+++........ ...|.++...+ ++.+.+ |+.++-|..||..+++....... ....|.++...++|.+.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW 553 (781)
T 3v9f_A 476 LASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMW 553 (781)
T ss_dssp SSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEE
T ss_pred CCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEE
Confidence 8876543332222 35789999988 676654 55544588888776653332111 23568999999999877
Q ss_pred EEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCC-
Q 001176 937 VSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPA- 1015 (1132)
Q Consensus 937 ~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~- 1015 (1132)
++.. +|.|..||..+++.. ......+-. ...+.++...++|.+.+.+. +.+..++........+....+...
T Consensus 554 i~T~-~Glv~~~d~~~~~~~---~~~~~~gl~--~~~i~~i~~d~~g~lW~~t~-~Gl~~~~~~~~~~~~~~~~dGl~~~ 626 (781)
T 3v9f_A 554 LATG-EGLVCFPSARNFDYQ---VFQRKEGLP--NTHIRAISEDKNGNIWASTN-TGISCYITSKKCFYTYDHSNNIPQG 626 (781)
T ss_dssp EEET-TEEEEESCTTTCCCE---EECGGGTCS--CCCCCEEEECSSSCEEEECS-SCEEEEETTTTEEEEECGGGTCCSS
T ss_pred EEEC-CCceEEECCCCCcEE---EccccCCCC--CceEEEEEECCCCCEEEEcC-CceEEEECCCCceEEecccCCcccc
Confidence 7655 665488888765421 111112211 13577888899998766654 447778886555555543332222
Q ss_pred --CeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 1016 --PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 1016 --~i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
...++...+||++++ |+.+| +..++.+.
T Consensus 627 ~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 627 SFISGCVTKDHNGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp CEEEEEEEECTTSCEEE-EETTE-EEEECSCC
T ss_pred ccccCceEECCCCEEEE-ECCCc-eEEEChhh
Confidence 235677788888655 56577 55566553
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.53 E-value=3.6e-11 Score=131.06 Aligned_cols=281 Identities=9% Similarity=0.064 Sum_probs=191.8
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
+...+.++++.++|...++...++.|.+|+.. +......... + ...+.++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~-~~~~~~i~~~~ 66 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--P-DAKVMCLTISS 66 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--T-TCCEEEEEECT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--c-cCceeeEEECC
Confidence 44678999999999977776667888888642 2211111111 2 45688999999
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEE-EEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee-eccccCCe
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVM-TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRI 924 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~V 924 (1132)
+|.++++.. ++.|..||.. ++.. ..+......+.++++++ +++++++...++.|.+||. +++.... ...+...+
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred CCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 999888776 7889999986 3331 22223456789999999 7888887777889999998 5554332 33345678
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeCCCCc
Q 001176 925 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1003 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~~ 1003 (1132)
.++++.++|+.+++...++.|..||. +++... ..... . ...+..++++++|++.++. .++.|.+||.++.
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~-~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~- 214 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPT-P---ASGPVGITKGNDDALWFVEIIGNKIGRITTSGE- 214 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSS-T---TCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCC-C---CCcceeEEECCCCCEEEEccCCceEEEECCCCc-
Confidence 99999999998888887889999998 544321 11111 1 1356789999999976664 4788999999443
Q ss_pred eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeE
Q 001176 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1083 (1132)
Q Consensus 1004 ~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 1083 (1132)
...+.. ..+...+.+++++++|+++++...++.|..||. +++. ..+.. ..+...+.++++ + ++++.
T Consensus 215 ~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~---------~~~~~~~~~i~~-~-~g~l~ 280 (299)
T 2z2n_A 215 ITEFKI-PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPI---------QIKSAEPHGICF-D-GETIW 280 (299)
T ss_dssp EEEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEEC---------SSSSCCEEEEEE-C-SSCEE
T ss_pred EEEEEC-CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeC---------CCCCCccceEEe-c-CCCEE
Confidence 333311 123567899999999997776667899999998 4543 22211 123356788888 6 77766
Q ss_pred EEEeCCCcEEEEecCCCc
Q 001176 1084 ALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1084 ~s~~~Dg~i~vW~~~~~~ 1101 (1132)
++.+ .+.|..++..+.+
T Consensus 281 v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 281 FAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEET-TTEEEEEEEC---
T ss_pred EEec-CCcEEEEEcCccc
Confidence 6654 6778778876643
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.51 E-value=7.6e-13 Score=162.75 Aligned_cols=248 Identities=8% Similarity=-0.088 Sum_probs=163.3
Q ss_pred CCCCeeEEEEccCCCeEEEEE----cCCCcEEEEecCCCccc-cccceeeeecccccccccccccCCCCcCeEEEEEcCC
Q 001176 342 QGSNVMSMDFHPQQQTILLVG----TNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 416 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g----~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 416 (1132)
|...+.+++|||||++++++. +.+..|++||+.+++.+ .. . +.+. ....++||||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wspD 178 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTPD 178 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECTT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEecC
Confidence 344799999999999655443 33468999999998764 21 0 1111 1267899999
Q ss_pred CCeEEEEeCCCe-------------EEEEEecCCCce-eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC----cEEE
Q 001176 417 GLMLGVAFSKHI-------------VHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK----MIKV 478 (1132)
Q Consensus 417 g~~las~~~dg~-------------i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg----~v~v 478 (1132)
|+.|+.++.|.. |++|++.++... ........|...+..+.|+|||+. |+.++.++ .|.+
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYW 256 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEE
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEE
Confidence 999999988776 999999887532 122233345668899999999994 55554444 6777
Q ss_pred EECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCC-CCeEEEEEEcCCCC
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAP-GNWCTMMAYSADGT 551 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~---~~~~~~~-~~~v~~~~~s~~~~ 551 (1132)
||..+++ ...+..+...+....+ ++ +.+++.+. .++.|.+||+.++.. ...+..+ ...+..++++ ++.
T Consensus 257 ~~~~~~~-~~~l~~~~~~~~~~~~-~~--g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~ 331 (695)
T 2bkl_A 257 KRPGEKD-FRLLVKGVGAKYEVHA-WK--DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH 331 (695)
T ss_dssp ECTTCSS-CEEEEECSSCCEEEEE-ET--TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE
T ss_pred EcCCCCc-eEEeecCCCceEEEEe-cC--CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE
Confidence 7765554 3445555556666655 33 34444444 358899999987653 3333333 4568888888 566
Q ss_pred EEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE----cCCeEEEEECCCCee
Q 001176 552 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMNM 619 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (1132)
++++... ++...|+++++ +++....+..+....+..++++|+++.++... ..+.|++||+.+++.
T Consensus 332 lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 332 LSLEYLK--DATSEVRVATL-KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEE--TTEEEEEEEET-TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEE--CCEEEEEEEeC-CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 6666654 22334444554 35556666655344677788899998776433 457899999998774
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=4.3e-12 Score=135.40 Aligned_cols=243 Identities=11% Similarity=0.043 Sum_probs=176.7
Q ss_pred EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCC-cCeEEEEEcCCCCeEEEEeCCCeEEEEEecC
Q 001176 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 436 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~las~~~dg~i~iwd~~~ 436 (1132)
+|++++.++.|.+||.++|+.+-+ +..+. ..+.+++++|+|++++ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 799999999999999999986542 22233 4688999999999888 35778999999 6
Q ss_pred CCceeeeeeeecc-cCCEEEEEEecCCCcEEEEEEcC-CCcEEEEECCCCeEEEEecC------CCCCeEEEEeeccCCc
Q 001176 437 TGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYTFEG------HEAPVYSVCPHHKESI 508 (1132)
Q Consensus 437 ~~~~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~------h~~~v~~i~~~~~~~~ 508 (1132)
++.+.. +..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+.++.. +......+++ ..+|
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 776553 3333 34688999999999 7777776 778888884 8888776642 2123334444 3466
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC---
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--- 585 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--- 585 (1132)
.++++...++.|..||.+ ++.+..+... ..+.++...++|+.++++.. +++|..+|..+|+.+.++.....
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999998 7777777654 34556788899999988753 56799999999999988864321
Q ss_pred --CceEEEEEeCCCCEEEEEEcC--------CeEEEEEC-CCCeeEEEEeCCCCCCCcceEE
Q 001176 586 --RSLGVVQFDTTRNRFLAAGDE--------FQIKFWDM-DNMNMLTTVDADGGLPASPRLR 636 (1132)
Q Consensus 586 --~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~ 636 (1132)
..+..+...++|+.+++.... +..+++.+ .+++.+..+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 136778888999888776421 23345555 4677777776665555565543
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.51 E-value=4.2e-12 Score=136.16 Aligned_cols=240 Identities=8% Similarity=-0.062 Sum_probs=168.1
Q ss_pred CeeEEEEccCCCeEEE-EEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 345 NVMSMDFHPQQQTILL-VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla-~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
...+++++|+|+ +++ +.+.++.|.+|+..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 789999999998 666 556789999999765542210 11233567889999999966666
Q ss_pred eCCCeEEEEEecCCCceeeeeeee-cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEe
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 502 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~ 502 (1132)
. ++.|.+||..+..... +. .....+.+++++++|+ ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999987654321 21 2335789999999998 7777777889999986655443322233346788888
Q ss_pred eccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc
Q 001176 503 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 582 (1132)
Q Consensus 503 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1132)
+++ +.++++...++.|.+||................+..++++++|..+++.. .++.|.+||............
T Consensus 158 ~~~--g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 DNS--GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp CTT--CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTSCEEEECTTCSCCEECCCC
T ss_pred eCC--CCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC----CCCcEEEEcCCCCcceeeccC
Confidence 764 46777777789999999876554433333336788999999996666553 366799999876544332222
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 583 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
+. ..+..++++++|+.+++...++.|++++....+
T Consensus 232 ~~-~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 232 GL-NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp SC-SCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CC-CCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 22 268889999999877777889999999987654
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.50 E-value=5.5e-11 Score=132.73 Aligned_cols=279 Identities=9% Similarity=-0.018 Sum_probs=183.7
Q ss_pred EEccCCCeEEEEEc-CCC---cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe-
Q 001176 350 DFHPQQQTILLVGT-NVG---DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF- 424 (1132)
Q Consensus 350 ~~spdg~~lla~g~-~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~- 424 (1132)
...|++++++++-. ... .|.++|..+++.+.. +.....+ .+++||||++++++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 34577765444332 222 889999998876532 1112223 899999999998886
Q ss_pred ---------CCCeEEEEEecCCCceeeeeeee--cc---cCCEEEEEEecCCCcEEEEEEcC--CCcEEEEECCCCeEEE
Q 001176 425 ---------SKHIVHLYTYNPTGELRQHLEID--AH---VGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQY 488 (1132)
Q Consensus 425 ---------~dg~i~iwd~~~~~~~~~~~~l~--~h---~~~v~~v~~s~d~~~~~l~s~~~--dg~v~vwd~~~~~~~~ 488 (1132)
.++.|.+||..+.+.+.... +. .+ ...-..++|+|||+ +|+.++. ++.|.++| .+++.+.
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEe
Confidence 36789999998876554321 11 00 12345899999999 5665553 57899999 9999887
Q ss_pred E-ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec-----CCCCe-EEEEEEcCCCCEEEEEecCCC
Q 001176 489 T-FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-----APGNW-CTMMAYSADGTRLFSCGTSKE 561 (1132)
Q Consensus 489 ~-~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----~~~~~-v~~~~~s~~~~~l~~~~~~~~ 561 (1132)
+ +... .. +.+.+.+. ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 162 ~~i~~~-~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 232 (373)
T 2mad_H 162 QLLSSP-TC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--- 232 (373)
T ss_pred EEcCCC-ce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence 7 6422 21 33444443 46677888999999999 665542221 11111 233456676665544432
Q ss_pred CCCeEEEEeCCCCc--eeeeeccc---------cCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeeE
Q 001176 562 GESHLVEWNESEGA--IKRTYSGF---------RKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNML 620 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~ 620 (1132)
.+.+.+.|...+. .+..+... .......+.++|+++.++++.. .+.|.++|..+++.+
T Consensus 233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 4579999987543 22222211 0112344789999998888653 358999999999999
Q ss_pred EEEeCCCCCCCcceEEEcCCCC-EEEEEe-CCCcEEEEEcCCcceeeee
Q 001176 621 TTVDADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRM 667 (1132)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~ 667 (1132)
..+.... ...+++|+|||+ +++++. .++.|.+||..++ +..+.
T Consensus 312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~-~vv~~ 356 (373)
T 2mad_H 312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQS 356 (373)
T ss_pred EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC-CEEee
Confidence 9987543 468999999999 777776 5899999999998 44444
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.50 E-value=1.5e-11 Score=134.49 Aligned_cols=286 Identities=13% Similarity=0.116 Sum_probs=184.6
Q ss_pred EEEcCCCCEEEEEecC-CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE----------cCCeEEEE
Q 001176 544 MAYSADGTRLFSCGTS-KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFW 612 (1132)
Q Consensus 544 ~~~s~~~~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw 612 (1132)
....|+++.+++.... ...++.|.++|..+++.+.++..... + . ++++|||++++++. .++.|.+|
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 3456899998887541 11256899999999999998876554 3 4 99999999888865 36789999
Q ss_pred ECCCCeeEEEEeCCCC-----CCCcceEEEcCCCCEEEEEeC--CCcEEEEEcCCcceeeeeccccccccccCCCCCCCC
Q 001176 613 DMDNMNMLTTVDADGG-----LPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 685 (1132)
Q Consensus 613 d~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1132)
|..+++.+..+....+ ......++|+|||++++++.. ++.|.++|+.++ +....+....
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~-~vv~tI~v~g------------- 180 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-AFKRMLDVPD------------- 180 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEEECCS-------------
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC-cEEEEEECCC-------------
Confidence 9999999998865321 114578999999999998864 689999999988 5444432100
Q ss_pred CcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCC
Q 001176 686 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 765 (1132)
Q Consensus 686 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~ 765 (1132)
...++..
T Consensus 181 ---------------------------------------------------------~~~~~P~---------------- 187 (386)
T 3sjl_D 181 ---------------------------------------------------------CYHIFPT---------------- 187 (386)
T ss_dssp ---------------------------------------------------------EEEEEEE----------------
T ss_pred ---------------------------------------------------------cceeecC----------------
Confidence 0000000
Q ss_pred cccccceEEEEEecCCceEEeeccc-ceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCee-EE
Q 001176 766 SIAASKVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA-CI 843 (1132)
Q Consensus 766 ~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~-~~ 843 (1132)
+.-.-++.++||+.++....+ +.+.. .. . ...++. ...+. ..
T Consensus 188 ----g~~~~~~~~~DG~~~~v~~~~~g~v~~--~~--------------~-~~~~~~---------------~~~~~~~~ 231 (386)
T 3sjl_D 188 ----APDTFFMHCRDGSLAKVAFGTEGTPEI--TH--------------T-EVFHPE---------------DEFLINHP 231 (386)
T ss_dssp ----ETTEEEEEETTSCEEEEECCSSSCCEE--EE--------------C-CCCSCT---------------TSCBCSCC
T ss_pred ----CCceeEEECCCCCEEEEECCCCCeEEE--ee--------------c-ceeccc---------------cccccccc
Confidence 000112444555544433322 32210 00 0 011111 11121 23
Q ss_pred EEe-eCCCEEEEeeCCeEEEEECCCCe--EEEEee---------C-CCCCeEEEEEeCCCCCeEEEEeC----------C
Q 001176 844 ALS-KNDSYVMSASGGKVSLFNMMTFK--VMTMFM---------S-PPPAATFLAFHPQDNNIIAIGME----------D 900 (1132)
Q Consensus 844 ~~s-~dg~~la~~sdg~i~vwd~~~~~--~~~~~~---------~-~~~~i~~l~~sp~~~~~lasg~~----------d 900 (1132)
+|. ++|+++.+..+|+|.+.|+.+.. ....+. + ..+....+++++ +++.+.+... .
T Consensus 232 ~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~ 310 (386)
T 3sjl_D 232 AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTAS 310 (386)
T ss_dssp EEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCE
T ss_pred eeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCC
Confidence 554 68877776668999999997654 333332 0 123445688899 6666665532 2
Q ss_pred CcEEEEEcccceeeeeeccccCCeeEEEEcCCCC-EEEE-EcCCCcEEEEECCCccccc
Q 001176 901 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN-ALVS-SGADAQLCMWSIDKWEKLK 957 (1132)
Q Consensus 901 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s-~~~D~~i~iwd~~~~~~~~ 957 (1132)
..|.++|+.+++.+.++..- .++++|++++|++ +|++ ...++.|.++|..+++.+.
T Consensus 311 ~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 311 RFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp EEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 57999999999999887632 3688999999997 6555 5568999999999987544
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.49 E-value=6.5e-12 Score=137.41 Aligned_cols=283 Identities=12% Similarity=0.135 Sum_probs=189.7
Q ss_pred EEEccCCCeEEEEEcC----CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe
Q 001176 349 MDFHPQQQTILLVGTN----VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 424 (1132)
Q Consensus 349 ~~~spdg~~lla~g~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 424 (1132)
....|++++++++-.. ++.|.+.|..+++.+.+ +.....+ . +++||||+++++++
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~-------------------I~vG~~P-~-va~spDG~~lyVan 96 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGFLP-N-PVVADDGSFIAHAS 96 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECSSC-E-EEECTTSSCEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEE-------------------EECCCCC-c-EEECCCCCEEEEEc
Confidence 4557888865555443 68999999999887653 1112223 3 99999999888775
Q ss_pred ----------CCCeEEEEEecCCCceeeeeeeec-----ccCCEEEEEEecCCCcEEEEEEc--CCCcEEEEECCCCeEE
Q 001176 425 ----------SKHIVHLYTYNPTGELRQHLEIDA-----HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQ 487 (1132)
Q Consensus 425 ----------~dg~i~iwd~~~~~~~~~~~~l~~-----h~~~v~~v~~s~d~~~~~l~s~~--~dg~v~vwd~~~~~~~ 487 (1132)
.++.|.+||..+.+.+.... +.. ....-..++|+|||+ +++.+. .++.|.++|+.+++.+
T Consensus 97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk--~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 97 TVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGK--TLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSS--EEEEEECSSSCEEEEEETTTTEEE
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCC--EEEEEEcCCCCeEEEEECCCCcEE
Confidence 36789999999987665432 211 012456799999999 455554 3789999999999999
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCce-EEe----cCCCCeE-EEEEE-cCCCCEEEEEecCC
Q 001176 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDY----DAPGNWC-TMMAY-SADGTRLFSCGTSK 560 (1132)
Q Consensus 488 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~----~~~~~~v-~~~~~-s~~~~~l~~~~~~~ 560 (1132)
.++.-.. ... +.|.+. ..+++.+.||.+.+.++...... ... ......+ ....| .++|++++...
T Consensus 174 ~tI~v~g--~~~--~~P~g~-~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--- 245 (386)
T 3sjl_D 174 RMLDVPD--CYH--IFPTAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--- 245 (386)
T ss_dssp EEEECCS--EEE--EEEEET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT---
T ss_pred EEEECCC--cce--eecCCC-ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC---
Confidence 8885321 111 223332 56778889999999998763332 211 1111222 12355 46786655432
Q ss_pred CCCCeEEEEeCCCCc--eeeeec---------cccCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCee
Q 001176 561 EGESHLVEWNESEGA--IKRTYS---------GFRKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNM 619 (1132)
Q Consensus 561 ~~~~~i~~wd~~~~~--~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~ 619 (1132)
++.+++.|..++. ....+. +........+++++++++++.... .+.|.+.|+.+++.
T Consensus 246 --~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 246 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 5679999987654 333332 111112334778999998888643 25799999999999
Q ss_pred EEEEeCCCCCCCcceEEEcCCCC-EEEEEe-CCCcEEEEEcCCcceeeeecc
Q 001176 620 LTTVDADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
+..+.... .+..+++++|++ +|+++. .++.|.++|..++ +..+.+.
T Consensus 324 ~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~ 371 (386)
T 3sjl_D 324 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVN 371 (386)
T ss_dssp EEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTC-CEEEEEC
T ss_pred EEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCC-cEEEEec
Confidence 99987542 578999999997 666654 4899999999998 5665554
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.48 E-value=3.4e-12 Score=158.06 Aligned_cols=247 Identities=10% Similarity=0.032 Sum_probs=163.5
Q ss_pred CCCcCeEEEEEcCCCCeEEEEeCC-----CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCc--
Q 001176 403 DAAISVNRCVWGPDGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 475 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~~d-----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~-- 475 (1132)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 344578899999999999987654 4699999999876542 112222467899999 7 5666655543
Q ss_pred ------------EEEEECCCCe----EEEEecCCCCCeEEEEeeccCCccEEEEEecCC-----eEEEEEcCCC--CceE
Q 001176 476 ------------IKVWDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYL--GSRV 532 (1132)
Q Consensus 476 ------------v~vwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~--~~~~ 532 (1132)
|++|++.++. .+.....+...+.++.|+|+ |++|+..+.++ .|++||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSD--GRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT--SCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCC--CCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 8999998765 23333334446888888764 47777777544 8999999876 3134
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc-eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 001176 533 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 611 (1132)
Q Consensus 533 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 611 (1132)
.+..+...+.... +|+|+.|+..+.....+..|++||+.++. ....+..+....+..++++ ++..+++...|+..++
T Consensus 311 ~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 311 ALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred EecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 4444444444443 48999988877543346789999998752 3333333333356677777 4556677788888777
Q ss_pred EECC-CCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe----CCCcEEEEEcCCc
Q 001176 612 WDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT----SDNGIKILANSDG 661 (1132)
Q Consensus 612 wd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iw~~~~~ 661 (1132)
|.+. +++....+..+. ...+..+.++|+++.++... ..++|++||+.++
T Consensus 389 ~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 7554 455566665432 23678889999988666432 2478999999887
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.48 E-value=2e-10 Score=125.14 Aligned_cols=278 Identities=9% Similarity=-0.016 Sum_probs=191.5
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
....+.+++++++|+ +.++...++.|.+||.. ++... +. +..+...+.+++++++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~------~~------------~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE------FE------------VPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE------EE------------CSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE------EE------------CCCCCCcceeEEECCCCCEEE
Confidence 346899999999998 67766678999999987 54321 00 122346789999999999888
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE-EecCCCCCeEEE
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSV 500 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~i 500 (1132)
+...++.|..||.. ++... ..+......+.++++.++|. ++++...++.|..+|.. ++... .+......+.++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFTE--YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCeEE--ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77778899999987 44321 12333446789999999998 67777778899999987 65542 333345678888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeee
Q 001176 501 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 579 (1132)
Q Consensus 501 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1132)
++.++ +.+.++...++.|..||. ++.... ........+..+++.++|+..++.. ..+.|.+||. +++....
T Consensus 152 ~~d~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~----~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 152 TLGSD--NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI----MGNKIGRITT-TGEISEY 223 (300)
T ss_dssp EECTT--SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEE
T ss_pred EECCC--CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc----CCCEEEEEcC-CCcEEEE
Confidence 88764 466776666889999988 333322 2223445788999999997766553 2567999998 5554332
Q ss_pred -eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001176 580 -YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 658 (1132)
Q Consensus 580 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 658 (1132)
..... ..+.+++++++|+.+++...++.|..|+. +++.. .+........+.++++.++|.+.++.. . .|..++.
T Consensus 224 ~~~~~~-~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 224 DIPTPN-ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ECSSTT-CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ECCCCC-CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 22222 26788999999986666556789999998 44433 333332234688999999998665544 4 6666664
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.47 E-value=4.1e-11 Score=133.78 Aligned_cols=239 Identities=12% Similarity=0.025 Sum_probs=162.9
Q ss_pred EEEEeeCCCEEEEee-----------CCeEEEEECCCCeEEEEeeCC-------CCCeEEEEEeCCCCCeEEEEeC--CC
Q 001176 842 CIALSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMFMSP-------PPAATFLAFHPQDNNIIAIGME--DS 901 (1132)
Q Consensus 842 ~~~~s~dg~~la~~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~i~~l~~sp~~~~~lasg~~--dg 901 (1132)
.+++||||++++++. ++.|.+||..+++.+.++... ......++|+| +|++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 899999999998884 467999999998888776532 12355899999 8888888764 57
Q ss_pred cEEEEEcccceeeee-eccccCCeeEEEEcCCC-CEEEEEcCCCcEEEEECCCcccccceee-eCCCCCCCCCCCceeEE
Q 001176 902 SVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFI-QAPAGRQSPLVGETKVQ 978 (1132)
Q Consensus 902 ~v~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~ 978 (1132)
.|.++| .+++.+.. +.... ++.+.|++ +.+++.+.||.+.+++. +++....... ....+.. .-.....
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~ 219 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPA 219 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeecce
Confidence 899999 99988877 65321 24555665 45667788999999999 7654321110 0001110 0112345
Q ss_pred ECCCCcE-EEEEeCCeEEEEeCCCCc---eeecCCCC-------CCCCCeEEEEEccCCCEEEEEec----------CCc
Q 001176 979 FHNDQTH-LLVVHESQISVYDSKLEC---SRSWSPKD-------ALPAPISSAIYSCDGLLVYAGFC----------DGA 1037 (1132)
Q Consensus 979 ~s~dg~~-l~~~~d~~v~vwd~~~~~---~~~~~~~~-------~h~~~i~~i~~s~dg~~las~~~----------dg~ 1037 (1132)
+.+++.. ++++.++.+.+.|+.... +..+.... ........++++||++.|+++.. .+.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 6666554 444667889999983321 12221100 01223445889999998887653 357
Q ss_pred EEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCC-eEEEEe-CCCcEEEEecCCCccc
Q 001176 1038 IGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPSDAELK 1103 (1132)
Q Consensus 1038 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~-~Dg~i~vW~~~~~~~~ 1103 (1132)
|.++|+.+++.+.++... ..+..++|+| |++ +++++. .++.|.+||+.+++..
T Consensus 300 V~VID~~t~~vv~~i~~g------------~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 300 VTSVTGLVGQTSSQISLG------------HDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EEEEECCCCEEEEEEECC------------CCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 999999999998887422 2467899999 667 777777 5999999999998843
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.41 E-value=5.8e-10 Score=121.40 Aligned_cols=278 Identities=8% Similarity=0.037 Sum_probs=188.7
Q ss_pred cccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEee
Q 001176 768 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 847 (1132)
Q Consensus 768 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~ 847 (1132)
....+.++++.++|...++...++.|.+|+.. +......+.. + ...+.++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-----------------------~~~~~~~~~~--~-~~~~~~i~~~~ 71 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-----------------------GRIKEFEVPT--P-DAKVMCLIVSS 71 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECSS--T-TCCEEEEEECT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-----------------------CceEEEECCC--C-CCcceeEEECC
Confidence 34578899999999977777777888888642 1111111111 2 35688999999
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEE-EeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeee-eeccccCCe
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRI 924 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~V 924 (1132)
+|.+.++.. ++.|..||.. ++... ........+.++++++ +++++++...++.|..||.. ++... .+......+
T Consensus 72 ~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~ 148 (300)
T 2qc5_A 72 LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYP 148 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCE
T ss_pred CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCc
Confidence 999877766 6889999988 55432 2222446789999999 78888777668899999987 55442 233345678
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeCCCCc
Q 001176 925 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1003 (1132)
Q Consensus 925 ~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~~ 1003 (1132)
.++++.++|+.+++...++.|..|+. +++... ... ... ...+..++++++|.+.++. ..+.|.+|+.++..
T Consensus 149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~-~~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~ 220 (300)
T 2qc5_A 149 AFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPL-PTN---AAAPVGITSGNDGALWFVEIMGNKIGRITTTGEI 220 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EEC-SST---TCCEEEEEECTTSSEEEEETTTTEEEEECTTCCE
T ss_pred eeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeC-CCC---CCCcceEEECCCCCEEEEccCCCEEEEEcCCCcE
Confidence 99999999998887777888999998 443221 111 111 1356899999999877765 45689999985544
Q ss_pred eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeE
Q 001176 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1083 (1132)
Q Consensus 1004 ~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 1083 (1132)
...... .+...+.+++++++|++.++...++.|..||. +++.. .+. .+ .....+.+++.++ ++++.
T Consensus 221 ~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~-----~~~~~~~~i~~~~-~g~l~ 286 (300)
T 2qc5_A 221 SEYDIP--TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQ-----TENAEPHGITFGK-DGSVW 286 (300)
T ss_dssp EEEECS--STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CC-----STTCCCCCEEECT-TSCEE
T ss_pred EEEECC--CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CC-----ccCCccceeEeCC-CCCEE
Confidence 332222 22567899999999997777666799999998 45433 221 11 1234567788888 66666
Q ss_pred EEEeCCCcEEEEecC
Q 001176 1084 ALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1084 ~s~~~Dg~i~vW~~~ 1098 (1132)
++.. . .|..++..
T Consensus 287 v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 287 FALK-C-KIGKLNLN 299 (300)
T ss_dssp EECS-S-EEEEEEEC
T ss_pred EEcc-C-ceEEeCCC
Confidence 6554 4 77766653
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.40 E-value=7e-11 Score=131.99 Aligned_cols=204 Identities=15% Similarity=0.104 Sum_probs=139.9
Q ss_pred eEEEEeeCCCEEEEee---CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeee-
Q 001176 841 ACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK- 916 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~- 916 (1132)
..++|+|||++++++. +++|.+.|+.+++.+.++..... ....|.+.+.+++.+.||.+.+.+..+++...+
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 4578899999988875 47899999999999888874321 334442446666777888888888866654422
Q ss_pred ---eccccCCe-eEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCC----CCCCCceeEEECCCCcEEEE
Q 001176 917 ---LKGHQNRI-TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ----SPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 917 ---l~~h~~~V-~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~dg~~l~~ 988 (1132)
+.....++ ..+.|++++..++..+..+.|.+.|+.+................ ........++++||++++++
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22112221 23578999988887788899999999764421111111100000 00012234789999998888
Q ss_pred Ee-----------CCeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEeCCCcceeccc
Q 001176 989 VH-----------ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAGF-CDGAIGVFDAETLRFRCRI 1052 (1132)
Q Consensus 989 ~~-----------d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~-~las~~-~dg~i~vwd~~~~~~~~~~ 1052 (1132)
.. ++.|.++|. +.+.+..+.. ......++|+|||+ ++++.. .++.|.|+|+.+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIEL----GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEEC----CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 42 347999999 7777777654 23588999999999 888888 5999999999999999886
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.40 E-value=2.9e-11 Score=149.67 Aligned_cols=246 Identities=8% Similarity=-0.034 Sum_probs=158.6
Q ss_pred CCeeEEEEccCCCeEEEEEcCCC----cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCe
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 419 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 419 (1132)
..+.+++|||||++++++.+.+| .|++||+.+++.+.. ..+...+..++|||| +.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD-~~ 221 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN-DA 221 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-SE
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-CE
Confidence 36889999999996555544333 599999999876431 001112357899999 99
Q ss_pred EEEEeCCCe--------------EEEEEecCCCce-eeeeeeecccCCEEEEEEecCCCcEEEEEEcC-----CCcEEEE
Q 001176 420 LGVAFSKHI--------------VHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKMIKVW 479 (1132)
Q Consensus 420 las~~~dg~--------------i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-----dg~v~vw 479 (1132)
|+.++.++. |++|++.++... ........|...+..+.|+|||+ +|+..+. ...|++|
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~~l~~~ 299 (741)
T 1yr2_A 222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR--WVVITSSEGTDPVNTVHVA 299 (741)
T ss_dssp EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCSCCEEEEE
T ss_pred EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCCcceEEEE
Confidence 998876554 889998776532 11112223334688999999999 4554443 3489999
Q ss_pred ECCCC--eEEEEecCCCCCeEEEEeeccCCccEEEEEec----CCeEEEEEcCCC--CceEEecCCCCeEEEEEEcCCCC
Q 001176 480 DVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADGT 551 (1132)
Q Consensus 480 d~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~----dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~ 551 (1132)
|+.++ +....+..+...+.... .++ |..|+..+. ++.|.+||+.+. .....+..+...+..++++ ++.
T Consensus 300 d~~~~~~~~~~~l~~~~~~~~~~~-~~d--g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~ 375 (741)
T 1yr2_A 300 RVTNGKIGPVTALIPDLKAQWDFV-DGV--GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNR 375 (741)
T ss_dssp EEETTEECCCEEEECSSSSCEEEE-EEE--TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTE
T ss_pred ECCCCCCcccEEecCCCCceEEEE-ecc--CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCE
Confidence 99887 31455655655555553 344 366666655 345999998874 2233444445567777877 445
Q ss_pred EEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEE-E---cCCeEEEEECCCCee
Q 001176 552 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-G---DEFQIKFWDMDNMNM 619 (1132)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~dg~i~iwd~~~~~~ 619 (1132)
.+++... ++...|+++++ +++....+.......+..++++|+++.++.. + ..+.|++||+.+++.
T Consensus 376 lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 376 LFASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 5555543 23344555565 3555666655434468889999998766643 2 457899999998873
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.38 E-value=7.4e-11 Score=131.78 Aligned_cols=279 Identities=10% Similarity=0.088 Sum_probs=188.7
Q ss_pred cCCCeEEEEEcCC----CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe----
Q 001176 353 PQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF---- 424 (1132)
Q Consensus 353 pdg~~lla~g~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~---- 424 (1132)
|++++++++...+ +.|.+.|..+++.+.+ + .--..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~--I-----------------~vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGM--T-----------------DGGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE--E-----------------EECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEE--E-----------------ECCCCC--ceEECCCCCEEEEEecccc
Confidence 5666555555444 7999999999887653 1 111224 799999999888876
Q ss_pred ------CCCeEEEEEecCCCceeeeeeee--c---ccCCEEEEEEecCCCcEEEEEEcC--CCcEEEEECCCCeEEEEec
Q 001176 425 ------SKHIVHLYTYNPTGELRQHLEID--A---HVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 425 ------~dg~i~iwd~~~~~~~~~~~~l~--~---h~~~v~~v~~s~d~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~ 491 (1132)
.++.|.++|..+++.+.... +. . .......++|+|||+ +++.+.. ++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987665432 21 0 112346789999999 5555543 6899999999999988876
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE----ecCCCCe-EEEEEEcCCCCEEEEEecCCCCCCeE
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHL 566 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~----~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1132)
--. . ....|.+. ..+++.+.||.+.+.+..+.+.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g--~--~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPD--C--YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCS--E--EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCC--c--eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 322 1 22334333 5667778889888888844433321 1111111 123567899888777653 5679
Q ss_pred EEEeCCCCcee--eeeccc---------cCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeeEEEEeC
Q 001176 567 VEWNESEGAIK--RTYSGF---------RKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 567 ~~wd~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 625 (1132)
.+.|...+... ..+... .......++++|+++++++... .+.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998654421 111100 0001223689999988877642 35799999999999999875
Q ss_pred CCCCCCcceEEEcCCCC-EEEEEe-CCCcEEEEEcCCcceeeeec
Q 001176 626 DGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 626 ~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~ 668 (1132)
.. ....++|+|||+ ++++.. .++.|.++|..++ +..+.+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence 43 368999999999 888888 5899999999998 555543
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.36 E-value=1.8e-10 Score=126.48 Aligned_cols=243 Identities=12% Similarity=0.051 Sum_probs=164.9
Q ss_pred CcCeEEEEEcCCCCeEEE-------EeCCCeEEEEEecCCCceeeee-eeecccCCEEEEEEecC-CCcEEEEEEcCCCc
Q 001176 405 AISVNRCVWGPDGLMLGV-------AFSKHIVHLYTYNPTGELRQHL-EIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKM 475 (1132)
Q Consensus 405 ~~~V~~v~~spdg~~las-------~~~dg~i~iwd~~~~~~~~~~~-~l~~h~~~v~~v~~s~d-~~~~~l~s~~~dg~ 475 (1132)
-....+++|+++|.++++ +..++.|.+||..+++...... ...++...+.+++++++ ++ ++++.. .+.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~-~~~ 93 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVADM-RLG 93 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEET-TTE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEEC-CCC
Confidence 345679999999988887 5678899999988776432110 01125567999999999 65 444444 447
Q ss_pred EEEEECCCCeEEEE-ecC----CCCCeEEEEeeccCCccEEEEEecC---------------CeEEEEEcCCCCceEEec
Q 001176 476 IKVWDVVAGRKQYT-FEG----HEAPVYSVCPHHKESIQFIFSTAID---------------GKIKAWLYDYLGSRVDYD 535 (1132)
Q Consensus 476 v~vwd~~~~~~~~~-~~~----h~~~v~~i~~~~~~~~~~l~s~s~d---------------g~i~~wd~~~~~~~~~~~ 535 (1132)
|.+||.. ++.... ... ....+.+++++++ |.++++...+ +.|..||.. + ....+.
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~~ 168 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-QMIQVD 168 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-CEEEEE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccccccccCCCCeEEEECCC-C-CEEEec
Confidence 9999988 765433 221 1235788888764 4677766655 567777655 3 333222
Q ss_pred CCCCeEEEEEEc----CCCCEEEEEecCCCCCCeEEEEeCC-CCce-----eeeeccccCCceEEEEEeCCCCEEEEEEc
Q 001176 536 APGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNES-EGAI-----KRTYSGFRKRSLGVVQFDTTRNRFLAAGD 605 (1132)
Q Consensus 536 ~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 605 (1132)
........++++ ++++.++.+.. .++.|.+||.. +++. ...+..+....+..++++++|+.+++...
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred cCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 233456789999 99987766542 35779999976 4442 22333322025778999999988888778
Q ss_pred CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCC
Q 001176 606 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSD 660 (1132)
Q Consensus 606 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~ 660 (1132)
++.|.+||..+++.+..+..+. ..+.+++|+++++.|+++ ..++.|..|+...
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8999999998777776666543 368899999999955554 4568899998764
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=1.8e-10 Score=126.60 Aligned_cols=246 Identities=10% Similarity=0.053 Sum_probs=163.2
Q ss_pred CCeeEEEEccCCCeEEEE-------EcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC
Q 001176 344 SNVMSMDFHPQQQTILLV-------GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 416 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~-------g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 416 (1132)
....+++|+++|+ ++++ +..++.|.+||..+++.... .. ....++...+.+++++++
T Consensus 18 ~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------~~---------~~~~~~~~~~~~i~~~~~ 81 (314)
T 1pjx_A 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------CK---------PEVNGYGGIPAGCQCDRD 81 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE------EC---------CEETTEECCEEEEEECSS
T ss_pred CCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE------Ee---------cccCCCCCCCceEEEecC
Confidence 4678999999997 6766 56789999999887764321 00 001224567899999999
Q ss_pred -CCeEEEEeCCCeEEEEEecCCCceee-eeeeec-ccCCEEEEEEecCCCcEEEEEEcCC---------------CcEEE
Q 001176 417 -GLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDD---------------KMIKV 478 (1132)
Q Consensus 417 -g~~las~~~dg~i~iwd~~~~~~~~~-~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~d---------------g~v~v 478 (1132)
|+++++.. .+.|.+||.+ ++.... .....+ ....+.+++++++|+ ++++...+ +.|..
T Consensus 82 ~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (314)
T 1pjx_A 82 ANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp SSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred CCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEEE
Confidence 76555544 4479999988 553221 100011 124588999999998 56665544 56777
Q ss_pred EECCCCeEEEEecCCCCCeEEEEee--ccCCccEE-EEEecCCeEEEEEcCC-CCc-----eEEecCCC-CeEEEEEEcC
Q 001176 479 WDVVAGRKQYTFEGHEAPVYSVCPH--HKESIQFI-FSTAIDGKIKAWLYDY-LGS-----RVDYDAPG-NWCTMMAYSA 548 (1132)
Q Consensus 479 wd~~~~~~~~~~~~h~~~v~~i~~~--~~~~~~~l-~s~s~dg~i~~wd~~~-~~~-----~~~~~~~~-~~v~~~~~s~ 548 (1132)
||.. ++..... .+......++++ .++++..+ ++...++.|.+||++. +.. ...+..+. ..+..+++++
T Consensus 158 ~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~ 235 (314)
T 1pjx_A 158 FTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE 235 (314)
T ss_dssp ECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred ECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence 7765 5543322 333456788887 11344554 4445789999999863 221 11223333 5678999999
Q ss_pred CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCC
Q 001176 549 DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDN 616 (1132)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 616 (1132)
+|+..++... ++.|.+||..+++.+..+..+.. .+.+++|+++++.|++++ .++.|..|++..
T Consensus 236 ~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 236 DNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TCCEEEEEET----TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9988777643 56799999987877776665544 788999999999666554 567899998864
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.32 E-value=6.4e-10 Score=126.03 Aligned_cols=240 Identities=10% Similarity=-0.009 Sum_probs=164.2
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
...++++|+|+|+ ++++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4789999999998 788888889999999987765321 111 12233 9999999999988
Q ss_pred eCCC--eEEEEEecCCCceeeeeeeec-ccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE----ecCCCCC
Q 001176 424 FSKH--IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT----FEGHEAP 496 (1132)
Q Consensus 424 ~~dg--~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~----~~~h~~~ 496 (1132)
..++ .|.+|+..++........+.. ....+.+++++|++. .|+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 799999887654332212222 446688999999555 344467788999999887764322 2222222
Q ss_pred e--EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC---------------CCeEEEEEEcCCCCEEEEEecC
Q 001176 497 V--YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP---------------GNWCTMMAYSADGTRLFSCGTS 559 (1132)
Q Consensus 497 v--~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~~ 559 (1132)
- ..++|+|.. +.++++-..++.|+.|+.+.. ...+.+. -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~~-g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFVD-SNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETTT-TEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCCC-CEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 389998753 367777778899999987643 2222222 13478999999999666543
Q ss_pred CCCCCeEEEEeCCCCceeeeecccc--------------CCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 001176 560 KEGESHLVEWNESEGAIKRTYSGFR--------------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 614 (1132)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1132)
.++++|+.|++.++.. .++.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0367899999877764 3333320 124778999999777676667788887765
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.31 E-value=5.6e-10 Score=126.51 Aligned_cols=252 Identities=13% Similarity=0.049 Sum_probs=166.4
Q ss_pred CCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCC--cEEEEEcccceee
Q 001176 838 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYNVRVDEVK 914 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~ 914 (1132)
.....++++++|+++++.. ++.|++||..+++........ .... ++|++ +++.|+++..++ .|.+|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4578999999999666665 689999999988776655543 3334 99999 888888887766 7889988766543
Q ss_pred eee----ccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCce-eEEECCCCcEEEEE
Q 001176 915 TKL----KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGET-KVQFHNDQTHLLVV 989 (1132)
Q Consensus 915 ~~l----~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~~~ 989 (1132)
..+ ..+...+.+++++|++..|..+..++.|+.||..++........ ...+... .... .++|+|++..|.++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~-~~~g~~~--~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL-ELSGSLG--TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEEC-CCCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecc-cccCCCC--CCccccEEEeCCCCEEEEE
Confidence 333 22456788999999555555577788999999987652111000 0111110 1113 99999965555553
Q ss_pred --eCCeEEEEeCCCCceeecCCCC---C---------CCCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCcceecccCC
Q 001176 990 --HESQISVYDSKLECSRSWSPKD---A---------LPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRFRCRIGP 1054 (1132)
Q Consensus 990 --~d~~v~vwd~~~~~~~~~~~~~---~---------h~~~i~~i~~s~dg~~las~~-~dg~i~vwd~~~~~~~~~~~~ 1054 (1132)
.++.|+.|+.++... .+.... + .-.....++++++|+++++-+ .+++|+.|++.+|........
T Consensus 285 d~~~~~I~~~~~~g~~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~ 363 (409)
T 3hrp_A 285 DQNLSSVYKITPDGECE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQ 363 (409)
T ss_dssp ETTTTEEEEECTTCCEE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEEC
T ss_pred eCCCCEEEEEecCCCEE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCC
Confidence 468899999865422 221110 0 123478999999999777777 789999999888865432211
Q ss_pred C---ccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 001176 1055 S---AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1097 (1132)
Q Consensus 1055 ~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~ 1097 (1132)
. .+.........-..+..+++++ ++.++++-..+++|+.+.+
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 0 0000000011235688999999 6888888888899988776
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.29 E-value=4.5e-10 Score=137.53 Aligned_cols=251 Identities=11% Similarity=0.057 Sum_probs=164.8
Q ss_pred CCCCeeEEEEccCCCeEEEEEc----CCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCC
Q 001176 342 QGSNVMSMDFHPQQQTILLVGT----NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 417 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 417 (1132)
|...+..++|||||++++.+.+ ....|++||+.+|+.+.. . + +......++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-CC
Confidence 3457889999999996555433 335799999999985431 0 0 11113568899 99
Q ss_pred CeEEEEeCCC-------------eEEEEEecCCCce-eeeeeeec-ccCCEEEEEEecCCCcEEEEEEc---CCCcEEEE
Q 001176 418 LMLGVAFSKH-------------IVHLYTYNPTGEL-RQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVW 479 (1132)
Q Consensus 418 ~~las~~~dg-------------~i~iwd~~~~~~~-~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~---~dg~v~vw 479 (1132)
+.|+.++.+. .|++|++.++... ........ |...+..+.|+|||+.+ +++.+ .+..|++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence 9999988774 3999998876532 11222233 45567899999999953 33333 23589999
Q ss_pred ECCCCe-EEEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEcCCCCc--eEEecCCCCeEEEEEEcCCCCEE
Q 001176 480 DVVAGR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRL 553 (1132)
Q Consensus 480 d~~~~~-~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l 553 (1132)
|+.++. ....+..+....... +++.++ .+++....+ +.|..+|+.+... ...+..+...+. .|+++++.|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~g~-~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNKGS-TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEEE-EeccCC-EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 998764 345666666666554 444432 455555443 6799999987654 234444555444 899999998
Q ss_pred EEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeeE
Q 001176 554 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----FQIKFWDMDNMNML 620 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 620 (1132)
+..... ++...|++||+..+ ....+.......+..+.++++++.++....+ +.++.||+.+++..
T Consensus 341 v~~~~~-~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 341 FAEYMV-DATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEE-TTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEE-CCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 877642 23457999998744 4444443333356677788888777765544 89999999887643
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.28 E-value=9.7e-10 Score=119.28 Aligned_cols=229 Identities=9% Similarity=0.081 Sum_probs=154.8
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
.-..+..|+|++..++++...++.|..||..+++... + .....+.+++++++|+++++.
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~------~---------------~~~~~~~~i~~~~dG~l~v~~ 71 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR------V---------------TMDAPVSSVALRQSGGYVATI 71 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE------E---------------ECSSCEEEEEEBTTSSEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE------E---------------eCCCceEEEEECCCCCEEEEE
Confidence 3566899999776688888889999999998775421 1 134579999999999965543
Q ss_pred eCCCeEEEEEecCCCceeeeeeeec--ccCCEEEEEEecCCCcEEEEEE-cC--------CCcEEEEECCC-CeEEEEec
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTC-GD--------DKMIKVWDVVA-GRKQYTFE 491 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~--h~~~v~~v~~s~d~~~~~l~s~-~~--------dg~v~vwd~~~-~~~~~~~~ 491 (1132)
++.|.+||.++++.. ....... ....+.+++++|+|+ ++++. .. ...-.||.+.. ++.. .+.
T Consensus 72 --~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~ 145 (297)
T 3g4e_A 72 --GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYF 145 (297)
T ss_dssp --TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEE
T ss_pred --CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE-EEe
Confidence 567999999876532 2212111 123588999999998 45543 21 12334554442 4332 233
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcC--CCCce-----EEecCCCCeEEEEEEcCCCCEEEEEecCCCCCC
Q 001176 492 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSR-----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 564 (1132)
Q Consensus 492 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1132)
.+....+.++|+|++. .++++.+.++.|.+|+++ ++... ..+.........+++.++|++.++... .+
T Consensus 146 ~~~~~pngi~~spdg~-~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~----~~ 220 (297)
T 3g4e_A 146 DQVDISNGLDWSLDHK-IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN----GG 220 (297)
T ss_dssp EEESBEEEEEECTTSC-EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----TT
T ss_pred eccccccceEEcCCCC-EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----CC
Confidence 3344568899987542 344666778999999984 33211 122223457789999999987766642 56
Q ss_pred eEEEEeCCCCceeeeeccccCCceEEEEEe-CCCCEEEEEEc
Q 001176 565 HLVEWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGD 605 (1132)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 605 (1132)
.|..||..+++.+..+..... .+++++|. |+++.|++++.
T Consensus 221 ~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 799999999999888877654 68999998 88887777653
No 217
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.27 E-value=1.1e-05 Score=95.79 Aligned_cols=532 Identities=10% Similarity=-0.014 Sum_probs=290.2
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeE
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 498 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 498 (1132)
+|+.+ ....|+..++++..... ...+. .-..+..++|++++.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 45678999998754322 11222 2346789999997764 555666788999999765544333433334577
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceee
Q 001176 499 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 578 (1132)
Q Consensus 499 ~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1132)
.+++.+.. +.+.++-...+.|.+.+++.................+++.|....|+..-. ...+.|...++.......
T Consensus 84 GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWLG-KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeCC-CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 88887543 356677777889999998765544444444556789999996666665532 125678888876544333
Q ss_pred eeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 579 TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
.... . .....++++++++.|+.+. ..+.|...|+..... ..+... ......+++.. +.++++-...+.|...|
T Consensus 161 l~~~-~-~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVPN-V-GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EECS-C-SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EECC-C-CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 3322 2 2678899999888887775 567899999876544 233222 22346777764 44444444578898888
Q ss_pred cCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCccccccccccc
Q 001176 658 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 737 (1132)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1132)
..++. ....+........ .+... .+... . ..+.+...++.
T Consensus 235 k~tg~-~~~~l~~~~~~p~------------~i~v~------------~~~~q-~-----------~~n~C~~~ng~--- 274 (628)
T 4a0p_A 235 KTSGQ-NRTIIQGHLDYVM------------DILVF------------HSSRQ-S-----------GWNECASSNGH--- 274 (628)
T ss_dssp TTTCC-SCEEEECSCCSCC------------EEEEE------------CGGGS-C-----------CCCTTTTTGGG---
T ss_pred CCCCC-ceEEEecCCCCcc------------eeeee------------eeccc-c-----------cceEeccCCCC---
Confidence 77773 2222222111000 01000 00000 0 00000000000
Q ss_pred ccccCceeeeecCCCCCCCcceEEecCC--cccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccccc
Q 001176 738 AEDVDKIKSWRIPDISDPSQIKALRLPD--SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 815 (1132)
Q Consensus 738 ~~~~~~v~~w~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 815 (1132)
-..+.+-.... . .....+. .......+|.. + ...|+.+. ...|+-..+..
T Consensus 275 ---C~~~C~~~~~~---~---~~C~C~~g~~l~~d~~~C~~--~-~~~Ll~s~-~~~i~~i~l~~--------------- 326 (628)
T 4a0p_A 275 ---CSHLCLAVPVG---G---FVCGCPAHYSLNADNRTCSA--P-TTFLLFSQ-KSAINRMVIDE--------------- 326 (628)
T ss_dssp ---CSSEEEEETTT---E---EEEECSTTCEECTTSSCEEC--C-SSEEEEEE-TTEEEEECCCT---------------
T ss_pred ---cchhhhcCCCC---C---eeEEcCCCcEecccCCcCcc--c-cceeeeec-cceEEEEeccc---------------
Confidence 00011100000 0 0000000 00001111111 1 12233222 23333222210
Q ss_pred ccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEEeeC------CCCCeEEEEEe
Q 001176 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS------PPPAATFLAFH 887 (1132)
Q Consensus 816 ~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s 887 (1132)
...........+ -..+.+++|.+.+..|..+. .+.|+.++.........+.. ....+..+++.
T Consensus 327 -----~~~~~~~l~~~~----~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD 397 (628)
T 4a0p_A 327 -----QQSPDIILPIHS----LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 397 (628)
T ss_dssp -----TCCCCEECCCTT----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEE
T ss_pred -----ccCceEEEEehh----cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEee
Confidence 000000111112 35578999999888887776 57899998875433233322 23468899999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcccceeeeee-ccccCCeeEEEEcC-CCCEEEEEcCCC--cEEEEECCCcccccceeeeC
Q 001176 888 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSP-TLNALVSSGADA--QLCMWSIDKWEKLKSRFIQA 963 (1132)
Q Consensus 888 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~sp-dg~~l~s~~~D~--~i~iwd~~~~~~~~~~~~~~ 963 (1132)
..++++..+-+..+.|.+.++. |+....+ ........+|++.| .|.++.|-.... .|...+++..... .....
T Consensus 398 ~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~--~l~~~ 474 (628)
T 4a0p_A 398 IYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE--VLFFS 474 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE--EEECS
T ss_pred ccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE--EEEec
Confidence 8445566666677889999985 4444333 33446689999999 555555533332 5666667654321 11111
Q ss_pred CCCCCCCCCCceeEEECCCCcEEEEEe--CCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001176 964 PAGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1041 (1132)
Q Consensus 964 ~~~~~~~~~~v~~~~~s~dg~~l~~~~--d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vw 1041 (1132)
. ......+++++++..|..++ .+.|..+++++.....+... ......++++.. +.+..+=...+.|...
T Consensus 475 ~------l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~--~~~~P~glav~~-~~ly~tD~~~~~i~~~ 545 (628)
T 4a0p_A 475 G------LSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS--NILQPVGLTVFE-NWLYWIDKQQQMIEKI 545 (628)
T ss_dssp S------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred c------CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcC--CCCCcEEEEEEC-CEEEEEECCCCeEEEE
Confidence 1 13468999999988888764 47899999966655554321 133456777654 4555555566778888
Q ss_pred eCCCcceeccc
Q 001176 1042 DAETLRFRCRI 1052 (1132)
Q Consensus 1042 d~~~~~~~~~~ 1052 (1132)
|..+|+....+
T Consensus 546 ~k~~G~~~~~i 556 (628)
T 4a0p_A 546 DMTGREGRTKV 556 (628)
T ss_dssp ETTSSSCCEEE
T ss_pred ECcCCCCcEEE
Confidence 88877755443
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.26 E-value=2.5e-09 Score=115.93 Aligned_cols=227 Identities=11% Similarity=-0.001 Sum_probs=155.9
Q ss_pred CeEEEEEcCCC-CeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001176 407 SVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 485 (1132)
Q Consensus 407 ~V~~v~~spdg-~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~ 485 (1132)
-.-+..|+|++ .++++...++.|..||..++... .+ .....+.+++++++|+ ++++. ++.|.+||..+++
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----RV-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWKEQS 84 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EE-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETTTTE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE----EE-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECCCCc
Confidence 45578999964 45666667889999999886532 12 2456799999999998 45543 5689999998887
Q ss_pred EEEEecC----CCCCeEEEEeeccCCccEEEEEecC---------CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001176 486 KQYTFEG----HEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 552 (1132)
Q Consensus 486 ~~~~~~~----h~~~v~~i~~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 552 (1132)
....... ....++.++++++ |.++++...+ ..-.+|.++.......+.........++|+||++.
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~d--G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPA--GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTT--SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCE
T ss_pred EEEEEecCCCCCCCCCCCEEECCC--CCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCE
Confidence 5433221 1234778888764 4666654322 33456655544444333333445688999999998
Q ss_pred EEEEecCCCCCCeEEEEeC--CCCcee-----eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeC
Q 001176 553 LFSCGTSKEGESHLVEWNE--SEGAIK-----RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~--~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1132)
|+.+.. ..+.|.+|++ .++... ..+.... .....++++++|+..++....+.|.+||..+++.+..+..
T Consensus 163 lyv~~~---~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 163 FYYIDS---LSYSVDAFDYDLQTGQISNRRSVYKLEKEE-QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp EEEEEG---GGTEEEEEEECTTTCCEEEEEEEEECCGGG-CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred EEEecC---CCCcEEEEeccCCCCcccCcEEEEECCCCC-CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 876643 3567999987 455432 2222222 2577899999998877777788999999999999988876
Q ss_pred CCCCCCcceEEEc-CCCCEEEEEeCC
Q 001176 626 DGGLPASPRLRFN-KEGSLLAVTTSD 650 (1132)
Q Consensus 626 ~~~~~~v~~~~~s-~~~~~l~~~~~d 650 (1132)
+. ..+++++|. |+++.|++++..
T Consensus 239 p~--~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 239 PV--DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp SS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred CC--CCceEEEEeCCCCCEEEEEcCC
Confidence 63 368999998 888887776653
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=3.3e-10 Score=125.81 Aligned_cols=272 Identities=10% Similarity=0.012 Sum_probs=173.4
Q ss_pred CCeeEEEEccCCCeEEEEEc--CCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 344 SNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .+.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6899999999998 566643 2343667776544322 111111 01224667899999999998777
Q ss_pred EEeC-----CCeEEEEEecCCCceeeeeeee----cccCCEEEEEEecCCCcEEEEEEc---CCCcEEEEECCCCeEEEE
Q 001176 422 VAFS-----KHIVHLYTYNPTGELRQHLEID----AHVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 422 s~~~-----dg~i~iwd~~~~~~~~~~~~l~----~h~~~v~~v~~s~d~~~~~l~s~~---~dg~v~vwd~~~~~~~~~ 489 (1132)
+... ++.|.+||+.+++.+... .+. .+...+..+++++++.. .+++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999987654422 221 12345689999987653 455555 678999999999988777
Q ss_pred ecCCCCCeE-EEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 490 FEGHEAPVY-SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 490 ~~~h~~~v~-~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
+.+|..... ...+.+ +|..+.+.+.++.++.|. ..+..++++|||+.|+.+... ...++.
T Consensus 161 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVI--DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEE--TTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccceeE--CCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 766532211 122222 345666777788876663 135789999999998887541 335666
Q ss_pred EeCC---CCc-----eee--eeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001176 569 WNES---EGA-----IKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 638 (1132)
Q Consensus 569 wd~~---~~~-----~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1132)
++.. .+. ... ...++.. ....++++++|..+++...++.|.+||..+++........ ......+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 6532 111 000 1112222 3456899999988888888999999998566644333322 12357899999
Q ss_pred CCCCEEEEEeCCCc
Q 001176 639 KEGSLLAVTTSDNG 652 (1132)
Q Consensus 639 ~~~~~l~~~~~dg~ 652 (1132)
+++.++++.+..+.
T Consensus 300 ~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 300 SDGYLYFDCNQLHH 313 (343)
T ss_dssp TTSCEEEEECCGGG
T ss_pred CCCcEEEEeCcccc
Confidence 99887777665433
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.23 E-value=4.6e-10 Score=137.41 Aligned_cols=244 Identities=11% Similarity=0.125 Sum_probs=161.4
Q ss_pred CCCcCeEEEEEcCCCCeEEEEe-----CCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC---
Q 001176 403 DAAISVNRCVWGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--- 474 (1132)
Q Consensus 403 ~h~~~V~~v~~spdg~~las~~-----~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg--- 474 (1132)
+|...+..++|||||++||.+. .+.+|++||+.+++.+.. .+.+ .....++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCccc
Confidence 4666889999999999998543 235799999999875432 1211 113578999 999 566666553
Q ss_pred ----------cEEEEECCCCe----EEEEecC-CCCCeEEEEeeccCCccEEEEEec----CCeEEEEEcCCCC-ceEEe
Q 001176 475 ----------MIKVWDVVAGR----KQYTFEG-HEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYLG-SRVDY 534 (1132)
Q Consensus 475 ----------~v~vwd~~~~~----~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~----dg~i~~wd~~~~~-~~~~~ 534 (1132)
.|++|++.++. .+..... |...+.++.++|++ .+|+.... ++.|+++|+.++. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD--RFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS--CEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC--CEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 49999998764 3333333 45567788887754 66644332 2589999998764 34445
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce--eeeeccccCCceEEEEEeCCCCEEEEEEc-CC--eE
Q 001176 535 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QI 609 (1132)
Q Consensus 535 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i 609 (1132)
..+....... ++++|..|+..+........|..+|+.++.. .+.+..+.. .+. .|++++++|+.... ++ .|
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEEEETTEEEEEEEETTEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEEEECCEEEEEEEECCeeEE
Confidence 5555444444 6777877776654322357899999987654 344555544 333 88999998887664 44 68
Q ss_pred EEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC----CcEEEEEcCCc
Q 001176 610 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD----NGIKILANSDG 661 (1132)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iw~~~~~ 661 (1132)
++|++.++ ....+.... ...+..+.+++++..++....+ +.+..||+.++
T Consensus 353 ~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 353 EQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 99998754 444454332 2245667778888877766554 78999998776
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.22 E-value=1.7e-09 Score=117.88 Aligned_cols=234 Identities=11% Similarity=0.037 Sum_probs=157.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 421 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 421 (1132)
......+..|+|+|+.+++++..++.|..|+. +++... +..+...+..++++++|++++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~l~v 101 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQRLVH 101 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSCEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCCEEE
Confidence 55678899999999988889988999999988 443211 223556789999999999777
Q ss_pred EEeCCCeEEEEEecCCCceeeeeeeecc-cCCEEEEEEecCCCcEEEEE----EcC-------------CCcEEEEECCC
Q 001176 422 VAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVT----CGD-------------DKMIKVWDVVA 483 (1132)
Q Consensus 422 s~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s----~~~-------------dg~v~vwd~~~ 483 (1132)
+...++.|.+|+.+ ++.........+. ...+.+++++++|+ +.+| |.. .+.|..||..+
T Consensus 102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 102 CEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 66666889999986 4422111111111 23577899999998 6665 332 25688888777
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEcCCCCc---eEEecCCCCeEEEEEEcCCCCEEE
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
++..... .......++|+|++ ..|+.+... +.|.+|++..... .............+++.++|++.+
T Consensus 179 g~~~~~~--~~~~p~gl~~spdg--~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv 254 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFSPDE--QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS 254 (305)
T ss_dssp CCCEEEE--EESSEEEEEECTTS--SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred CcEEEEe--cCCCCcceEEcCCC--CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence 7654333 34556789997754 666666554 7899999875431 111122233455788999999554
Q ss_pred EEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 613 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 613 (1132)
+. . + .|.+|+. .++.+..+.... .+..++|+++++.|+.++.++ ++.++
T Consensus 255 ~~-~----~-gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 255 SS-G----T-GVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CC-S----S-EEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred ec-C----C-cEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 43 1 2 3999998 577777776544 477899999998888887654 44333
No 222
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.22 E-value=7.7e-06 Score=97.12 Aligned_cols=527 Identities=9% Similarity=0.000 Sum_probs=269.8
Q ss_pred CCCeEEEEEecCCC-ceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE-EEEecCCCCCeEEEEe
Q 001176 425 SKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCP 502 (1132)
Q Consensus 425 ~dg~i~iwd~~~~~-~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~h~~~v~~i~~ 502 (1132)
....|+..++.+.. ... .+...-.....++|++.+.. ++++-...+.|..+++..... ...+...-.....+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 34567888877542 111 11223345789999997764 445555678899999765432 2233333356889998
Q ss_pred eccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc
Q 001176 503 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 582 (1132)
Q Consensus 503 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1132)
.+.. +.++++-...+.|.+.+++.................+++.|.+.+|+.... ...+.|...++..... ..+..
T Consensus 92 D~~~-~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~--g~~~~I~r~~~dG~~~-~~l~~ 167 (619)
T 3s94_A 92 DWLG-EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMDGSSR-FIIIN 167 (619)
T ss_dssp ETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC--SSSCEEEEEETTSCSC-EEEEC
T ss_pred EecC-CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc--CCCCEEEEEECCCCce-EEEEe
Confidence 7643 356677777899999999866554444444556778999997666665532 1245677777653322 22222
Q ss_pred ccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 583 FRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
..-.....++++++++.|+.+. ..+.|...|+............ ......+++..+ .+.++-...+.|...|..++
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 1222578899999887777765 5678999998765443333211 123467787655 34444445778999998777
Q ss_pred ceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccc-ccc-cccccc
Q 001176 662 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL-VDV-KPRVAE 739 (1132)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~ 739 (1132)
.. ...+........ .+. .+.+..+..........--.....+.. +.. .+....
T Consensus 245 ~~-~~~i~~~~~~p~------------~i~------------v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C 299 (619)
T 3s94_A 245 EG-LREIHSDIFSPM------------DIH------------AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCAC 299 (619)
T ss_dssp CC-CEECCSCCCCCS------------EEE------------ECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEEC
T ss_pred cc-cEEEecCCCCCc------------EEE------------EEccccCCCccccccCCCCcccceEECCCCCCCceEeC
Confidence 33 222221111000 000 000100000000000000000000000 000 000000
Q ss_pred ccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCcccccccccccc
Q 001176 740 DVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 819 (1132)
Q Consensus 740 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~ 819 (1132)
..|.. + . ....+|.. ....+|+. +..+.|+..++....
T Consensus 300 ~~g~~----l--------------~----~d~~~C~~--~~~~~Ll~-~~~~~i~~i~l~~~~----------------- 337 (619)
T 3s94_A 300 PTGVK----L--------------L----ENGKTCKD--GATELLLL-ARRTDLRRISLDTPD----------------- 337 (619)
T ss_dssp CTTCC----B--------------C----TTSSCBCS--SCSEEEEE-EESSCEEEEESSSTT-----------------
T ss_pred Cchhe----e--------------c----ccCcccCC--CCceEEEE-EcccceEEEecCCCc-----------------
Confidence 00000 0 0 00000000 01112222 223344444332110
Q ss_pred CCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEE
Q 001176 820 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 897 (1132)
Q Consensus 820 ~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg 897 (1132)
.......+.+ -..+.+++|++.+..|..++ .+.|+.++.........+.........+++.+.++++..+-
T Consensus 338 ---~~~~~~~~~~----l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD 410 (619)
T 3s94_A 338 ---FTDIVLQLED----IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTD 410 (619)
T ss_dssp ---CCCEECCCSC----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE
T ss_pred ---cceeEEeccc----cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEe
Confidence 0111111222 34578899999777777665 68899999876444333443445678999987455666665
Q ss_pred eCCCcEEEEEcccceeeeeeccccCCeeEEEEcCC-CCEEEEEc-CCCcEEEEECCCcccccceeeeCCCCCCCCCCCce
Q 001176 898 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT-LNALVSSG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGET 975 (1132)
Q Consensus 898 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spd-g~~l~s~~-~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 975 (1132)
+..+.|.+.++........+...-....+|++.|. |.+..|-. ....|...+++..... ..... . .....
T Consensus 411 ~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~--~l~~~---~---l~~P~ 482 (619)
T 3s94_A 411 TGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV--VLVNT---S---LGWPN 482 (619)
T ss_dssp TTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EEECS---S---CSCEE
T ss_pred CCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE--EEEeC---C---CCCCe
Confidence 66788999998754322222333456789999997 44444432 2366777777654321 11111 1 13467
Q ss_pred eEEECCCCcEEEEEe--CCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcc
Q 001176 976 KVQFHNDQTHLLVVH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1047 (1132)
Q Consensus 976 ~~~~s~dg~~l~~~~--d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~ 1047 (1132)
.+++++++..|..++ .+.|..+++++...+.+.... .....++++..+ .+..+-...+.|...|..+|.
T Consensus 483 GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 483 GLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK--IPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECC--CCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred eeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccC--CCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 899999888877754 577999998655444332111 112234555433 333333445667777777763
No 223
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.21 E-value=5.3e-09 Score=126.75 Aligned_cols=380 Identities=11% Similarity=0.047 Sum_probs=215.3
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCC----------e-EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 534 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~----------v-~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 534 (1132)
.++.++.++.|+-+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 5777788899999999999998887643221 0 11122 2257888999999999999999988766
Q ss_pred cCC-C-CeEEEEEEcC---CCCEEEEEecCC--CCCCeEEEEeCCCCceeeeecccc-----------------------
Q 001176 535 DAP-G-NWCTMMAYSA---DGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFR----------------------- 584 (1132)
Q Consensus 535 ~~~-~-~~v~~~~~s~---~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~----------------------- 584 (1132)
... . .....+..+| ++ .++++.... ..++.|+.||..+|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 543 1 1111111112 44 444443211 136789999999999887765210
Q ss_pred -------CCceEEEEEeCCCCEEEEEEcCCe-------------------EEEEECCCCeeEEEEeCCCCC-------CC
Q 001176 585 -------KRSLGVVQFDTTRNRFLAAGDEFQ-------------------IKFWDMDNMNMLTTVDADGGL-------PA 631 (1132)
Q Consensus 585 -------~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~ 631 (1132)
......++++|+.+.++.+..++. |..||..+|+.+..+....+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 001125788998899999877763 999999999999887643221 11
Q ss_pred cceEEEcCCCC---EEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCC
Q 001176 632 SPRLRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLE 708 (1132)
Q Consensus 632 v~~~~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 708 (1132)
+.......+|+ .++.++.+|.++++|..+|+.+.+.-.......... .+
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~---------------------------~~- 358 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGM---------------------------DM- 358 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE---------------------------ET-
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccccc---------------------------Cc-
Confidence 11112223565 788899999999999999943322111100000000 00
Q ss_pred CCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeec
Q 001176 709 RPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA 788 (1132)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 788 (1132)
..+..+.... ..|... .....+..|.......-..++|+|+...+++..
T Consensus 359 ----------------------~~~~pi~~~~----~~~~~~-----~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~ 407 (689)
T 1yiq_A 359 ----------------------KTGRPILDEE----NAAYWK-----NGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPA 407 (689)
T ss_dssp ----------------------TTTEEEECHH----HHCTTT-----SSSCEEESSCTTCSSCSSCCEEETTTTEEEEEE
T ss_pred ----------------------cCCCcccchh----hccccC-----CCCeeEeCCCcccccCCCcceECCCCCEEEEec
Confidence 0000000000 000000 001122233322233445689999988888877
Q ss_pred ccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeC---CCEEEEee-CCeEEEEE
Q 001176 789 SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN---DSYVMSAS-GGKVSLFN 864 (1132)
Q Consensus 789 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~d---g~~la~~s-dg~i~vwd 864 (1132)
.+....++...... .|....+... ... . +...|. +....... +|.|+.||
T Consensus 408 ~~~~~~~~~~~~~~--------------~~~~~~~~~~----------~g~-~-~~~~p~~~~~~~~~~~~~~g~l~A~D 461 (689)
T 1yiq_A 408 HIMSAYYEHIPEAP--------------KRNPFKSMYQ----------LGL-R-TGMMPEGAEGLLEMAKSWSGKLIAWD 461 (689)
T ss_dssp EECCEEEECCSSCC--------------CCCSCTTSCC----------CSS-E-ECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred cccceeeeeccccc--------------cccccccccc----------cCc-c-ccccCcccccCCCCCCCcceeEEEEE
Confidence 76555444221000 0110000000 000 0 000000 00000011 47899999
Q ss_pred CCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCC-eeEEEEcCCCCEEE
Q 001176 865 MMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALV 937 (1132)
Q Consensus 865 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~ 937 (1132)
+.+++.+..+..+.. +..-.++. .+.++++|+.||.|+.||..+|+.+.+++...+. ..-+.|+.+|+..+
T Consensus 462 ~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 462 PVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp TTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 999999888775543 33335555 6678899999999999999999999888754332 24467778887544
No 224
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.20 E-value=2.8e-10 Score=125.20 Aligned_cols=184 Identities=9% Similarity=0.069 Sum_probs=135.5
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 424 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 424 (1132)
.++.+++++... ++++|+.+ .+.+|++.......... ... ........+.. |++++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~------~~~---~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSD------STP---LTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSS------SCC---CCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccc------ccc---ccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 799999999998 67888776 55669976543110000 000 00101223556 999999 99999999
Q ss_pred CCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeec
Q 001176 425 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 504 (1132)
Q Consensus 425 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~ 504 (1132)
.++.|++||+.+..... ....|..++.++.+.+. .+++++.||.|.+||+.++.... +...|.+++|+|
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998866433 45567788988887754 27788899999999999887653 456899999988
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCc--eEEe------c---CCCCeEEEEEEcCCCCEEEEEec
Q 001176 505 KESIQFIFSTAIDGKIKAWLYDYLGS--RVDY------D---APGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 505 ~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
.+ ++.|..||++++|+.+.... ...+ . .+...|.+++|.+++.++++-..
T Consensus 173 kG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 173 SQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp SE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred Cc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 64 78899999999998887664 4444 2 35789999999999999886543
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=6.5e-09 Score=114.30 Aligned_cols=224 Identities=13% Similarity=0.016 Sum_probs=150.7
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 424 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 424 (1132)
-..+..|+|+++.+++++..++.|.+||..+++... + .....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~------~---------------~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV------H---------------ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------E---------------ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE------E---------------ECCCcceEEEEeCCCeEEEEE-
Confidence 456889999877788888888999999998765321 1 123579999999999987765
Q ss_pred CCCeEEEEEecCCCceeeeeeeec--ccCCEEEEEEecCCCcEEEEEEcC------CCcEEEEECCCCeEEEEecCCCCC
Q 001176 425 SKHIVHLYTYNPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEGHEAP 496 (1132)
Q Consensus 425 ~dg~i~iwd~~~~~~~~~~~~l~~--h~~~v~~v~~s~d~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~~~h~~~ 496 (1132)
.+ .|.+||..+++... ...... ....+.+++++|+|+ ++++... .+.|..+| +++.. .+..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 44 49999988876322 111111 123688999999998 4544332 24555556 56543 33233345
Q ss_pred eEEEEeeccCCccEE-EEEecCCeEEEEEcC--CC-Cc-----eEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001176 497 VYSVCPHHKESIQFI-FSTAIDGKIKAWLYD--YL-GS-----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l-~s~s~dg~i~~wd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1132)
...++|++++ +.+ ++.+.++.|.+||++ ++ .. ...+.........+++.++|++.++.. +.+.|.
T Consensus 181 ~~~i~~s~dg--~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~----~~~~v~ 254 (326)
T 2ghs_A 181 PNSICFSPDG--TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVD 254 (326)
T ss_dssp EEEEEECTTS--CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEE
T ss_pred cCCeEEcCCC--CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe----CCCEEE
Confidence 6788887754 554 555567899999986 43 21 112222345678899999998776654 256799
Q ss_pred EEeCCCCceeeeeccccCCceEEEEEe-CCCCEEEEEEc
Q 001176 568 EWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGD 605 (1132)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 605 (1132)
+||. +++.+..+..... .+.+++|+ ++++.|++++.
T Consensus 255 ~~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEB
T ss_pred EECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEec
Confidence 9998 5777777765544 68999998 88887766553
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.19 E-value=3.9e-09 Score=117.11 Aligned_cols=267 Identities=9% Similarity=0.038 Sum_probs=162.9
Q ss_pred CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc------cCCceEEEEEeCCCCEEEEEEc-----CC
Q 001176 539 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF------RKRSLGVVQFDTTRNRFLAAGD-----EF 607 (1132)
Q Consensus 539 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~-----dg 607 (1132)
..+..++++++|+.+++..... ++.+.+|.+.+++. ..+... .-..+..++++++++.+++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~--~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFY--QPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGG--CCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCC--CCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 5678999999999988864211 12134444435543 322211 1126888999999875555433 57
Q ss_pred eEEEEECCCCeeEEEEeCCCC----CCCcceEEEcCCCCEE-EEEe---CCCcEEEEEcCCcceeeeeccccccccccCC
Q 001176 608 QIKFWDMDNMNMLTTVDADGG----LPASPRLRFNKEGSLL-AVTT---SDNGIKILANSDGVRLLRMLEGRAMDKNRCP 679 (1132)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l-~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 679 (1132)
.|.+||+.+++.+..+..... ...+..+++++++..+ ++.. .++.|.+||..++ +..+.+.+|.....
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~--- 169 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAP--- 169 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSC---
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCcccc---
Confidence 999999999998877764321 1246899999865555 4444 5789999999877 44444433211000
Q ss_pred CCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcce
Q 001176 680 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 759 (1132)
Q Consensus 680 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~ 759 (1132)
T Consensus 170 -------------------------------------------------------------------------------- 169 (343)
T 2qe8_A 170 -------------------------------------------------------------------------------- 169 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCC
Q 001176 760 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 839 (1132)
Q Consensus 760 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~ 839 (1132)
.. ..+..+|..+.+...++.+..| ...
T Consensus 170 ----------~~---~~~~~~g~~~~~~~~~g~~~~~----------------------------------------~~~ 196 (343)
T 2qe8_A 170 ----------ED---IDLVIDGVPVQIGQPDGTVIRP----------------------------------------HLG 196 (343)
T ss_dssp ----------CS---CCCEETTEECBEECTTSCEECC----------------------------------------CCC
T ss_pred ----------cc---cceeECCEEEEeccCCCceece----------------------------------------ecc
Confidence 00 1122344444444445544433 223
Q ss_pred eeEEEEeeCCCEEEEee-C-CeEEEEECC---CCe-----EEE--EeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEE
Q 001176 840 AACIALSKNDSYVMSAS-G-GKVSLFNMM---TFK-----VMT--MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 907 (1132)
Q Consensus 840 v~~~~~s~dg~~la~~s-d-g~i~vwd~~---~~~-----~~~--~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd 907 (1132)
+..++++|||+.|+++. + ..+..++.. .+. ... ...++.+....+++++ +|.++++...++.|.+||
T Consensus 197 ~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 197 VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEE
T ss_pred cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEE
Confidence 56788888888887776 3 355555532 110 000 1112334567799999 889998888899999999
Q ss_pred cccceeeeeecc-ccCCeeEEEEcCCCCEEEEEcCCCcEE
Q 001176 908 VRVDEVKTKLKG-HQNRITGLAFSPTLNALVSSGADAQLC 946 (1132)
Q Consensus 908 ~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~~~D~~i~ 946 (1132)
..+++....... +...+.+++|.++++++++.+..+.+.
T Consensus 276 ~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 276 SADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSA 315 (343)
T ss_dssp TTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred CCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccc
Confidence 856664333322 245688999999999888887655443
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.18 E-value=8.1e-10 Score=121.46 Aligned_cols=195 Identities=13% Similarity=0.067 Sum_probs=123.8
Q ss_pred eEEEEeeCCCEEEEee---CCeEEE--EECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc-----
Q 001176 841 ACIALSKNDSYVMSAS---GGKVSL--FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----- 910 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~s---dg~i~v--wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~----- 910 (1132)
..++++|||++++++. +..|.+ +|..+ +.++.... . +.+.|++.+.+++.+.||.+.+.|+.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS--C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC--c--eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 3588889998888875 356888 88876 34443211 1 223453445566677888888889886
Q ss_pred ceeeee----eccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCC------CCCCCCCCCceeEEEC
Q 001176 911 DEVKTK----LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP------AGRQSPLVGETKVQFH 980 (1132)
Q Consensus 911 ~~~~~~----l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s 980 (1132)
++.... +.--..+. + ++++..++..+. +.|.+.|+.+........+... .+.. ......++|+
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~--p~g~~~v~~s 272 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFR--SAGFQMVAKL 272 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE--ECSSSCEEEE
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccc--cCcceeeEEc
Confidence 543321 11112233 3 666776666666 8999999875331110011100 0000 0122337899
Q ss_pred CCCcEEEEE-e-C--------CeEEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCE-EEEEe-cCCcEEEEeCCCcc
Q 001176 981 NDQTHLLVV-H-E--------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLL-VYAGF-CDGAIGVFDAETLR 1047 (1132)
Q Consensus 981 ~dg~~l~~~-~-d--------~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~-las~~-~dg~i~vwd~~~~~ 1047 (1132)
||+++++++ . . +.+.++|. +.+.+..+..+ .....|+|+|||++ +++.. .++.|.++|+.+++
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 999998874 3 2 36779999 66666666442 35889999999984 55555 49999999999999
Q ss_pred eecccC
Q 001176 1048 FRCRIG 1053 (1132)
Q Consensus 1048 ~~~~~~ 1053 (1132)
.+.++.
T Consensus 349 vv~~I~ 354 (368)
T 1mda_H 349 DQSSVE 354 (368)
T ss_dssp EEEECC
T ss_pred EEEEEE
Confidence 998885
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.17 E-value=9e-09 Score=124.47 Aligned_cols=192 Identities=12% Similarity=0.061 Sum_probs=129.3
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCC-----------eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-----------VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 534 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~-----------v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 534 (1132)
.++.++.++.|.-+|..+|+.+.++...... ...+++ .+..++.++.|+.|..+|..+++.+..+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4777777899999999999999877643211 112222 2367888899999999999999988877
Q ss_pred cCC-C----CeEEEEEEcCCCCEEEEEecCCC--CCCeEEEEeCCCCceeeeeccccCC---------------------
Q 001176 535 DAP-G----NWCTMMAYSADGTRLFSCGTSKE--GESHLVEWNESEGAIKRTYSGFRKR--------------------- 586 (1132)
Q Consensus 535 ~~~-~----~~v~~~~~s~~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~~--------------------- 586 (1132)
... . ..+.+.-.. .+..+++++...+ .++.|+.+|..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 654 1 111110011 2345555442111 2678999999999998777542210
Q ss_pred ----------ceEEEEEeCCCCEEEEEEcCC-------------------eEEEEECCCCeeEEEEeCCCCC-------C
Q 001176 587 ----------SLGVVQFDTTRNRFLAAGDEF-------------------QIKFWDMDNMNMLTTVDADGGL-------P 630 (1132)
Q Consensus 587 ----------~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~ 630 (1132)
....++++|++..++.+..++ .|..+|..+|+.+..+....+. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 113478899999998877654 5999999999999887643221 1
Q ss_pred CcceEEEcCCC---CEEEEEeCCCcEEEEEcCCcc
Q 001176 631 ASPRLRFNKEG---SLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 631 ~v~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
....+....+| ..++.++.+|.++++|..+|+
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 12222333467 688999999999999999993
No 229
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.17 E-value=6.3e-10 Score=122.38 Aligned_cols=187 Identities=11% Similarity=0.046 Sum_probs=134.4
Q ss_pred cceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC
Q 001176 770 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 849 (1132)
Q Consensus 770 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg 849 (1132)
..+..+++++....+++++.++ +.+|++........... . +.. .... .. + .. |+.++| |+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~---~-----~~~--~~~~--~~---l-p~-V~~l~f--d~ 97 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDS---T-----PLT--FKWE--KE---I-PD-VIFVCF--HG 97 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSS---C-----CCC--CSEE--EE---C-TT-EEEEEE--ET
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccc---c-----ccc--ceEE--ee---C-CC-eeEEEE--CC
Confidence 3688999999999998888875 55598753220000000 0 000 0011 11 3 45 999999 99
Q ss_pred CEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEE
Q 001176 850 SYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF 929 (1132)
Q Consensus 850 ~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~ 929 (1132)
++|+++.++.|++||+.+.........|...+.++.+.+ . -+|+++.||.|.+||+.++.... +...|+|++|
T Consensus 98 ~~L~v~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~W 170 (388)
T 1xip_A 98 DQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDV 170 (388)
T ss_dssp TEEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEE
T ss_pred CEEEEEcCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEE
Confidence 999999899999999988776666777788888888776 3 38889999999999999877543 4568999999
Q ss_pred cCCCCEEEEEcCCCcEEEEECCCcccccceeeeC------CCCCCCCCCCceeEEECCCCcEEEE
Q 001176 930 SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA------PAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 930 spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
||+| ++.+..||++++|+...++......+.. ..++. ..|.++.|.+++.++++
T Consensus 171 SpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~---~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 171 TNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE---YSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT---SEEEEEEESSSSEEEEE
T ss_pred cCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCC---eeEEEEEEecCCeEEEE
Confidence 9999 6789999999999888766311111211 01222 67899999999999988
No 230
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.16 E-value=1.6e-08 Score=111.17 Aligned_cols=224 Identities=15% Similarity=0.066 Sum_probs=147.1
Q ss_pred eEEEEEcCCCC-eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE
Q 001176 408 VNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 486 (1132)
Q Consensus 408 V~~v~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~ 486 (1132)
..+.+|+|++. ++++...++.|..||..+++.. .+ .+...+.+++|+++|+ ++++. .+ .|.+||..+++.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~v~~i~~~~dg~--l~v~~-~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT----VH-ALPFMGSALAKISDSK--QLIAS-DD-GLFLRDTATGVL 121 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EE-ECSSCEEEEEEEETTE--EEEEE-TT-EEEEEETTTCCE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EE-ECCCcceEEEEeCCCe--EEEEE-CC-CEEEEECCCCcE
Confidence 35678999754 5566667889999999876422 12 1346799999999997 55544 34 499999988875
Q ss_pred EEEecC----CCCCeEEEEeeccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 487 QYTFEG----HEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 487 ~~~~~~----h~~~v~~i~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
...... ....+.++++++++ .++++...+ +...+|.+++ .....+.........++|+||++.++.+..
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G--~l~v~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSG--ALWIGTMGRKAETGAGSIYHVAK-GKVTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTS--CEEEEEEETTCCTTCEEEEEEET-TEEEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred EEEeeCCCCCCCCCCCCEEECCCC--CEEEEeCCCcCCCCceEEEEEeC-CcEEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 432221 12357888887744 666554322 2234444433 333333222335678999999998876642
Q ss_pred CCCCCCeEEEEeCC--CC-ce-----eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCC
Q 001176 559 SKEGESHLVEWNES--EG-AI-----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 559 ~~~~~~~i~~wd~~--~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
.++.|.+||.. ++ .. ...+.... .....++++++|..+++...++.|.+||. +++.+..+..+. .
T Consensus 199 ---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~-~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~--~ 271 (326)
T 2ghs_A 199 ---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIK-GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG--K 271 (326)
T ss_dssp ---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSS-SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC--S
T ss_pred ---CCCEEEEEEcccccCCcccCceEEEECCCCC-CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC--C
Confidence 35679999986 55 32 22222222 25678999999987777767789999998 577777776553 2
Q ss_pred CcceEEEc-CCCCEEEEEeCC
Q 001176 631 ASPRLRFN-KEGSLLAVTTSD 650 (1132)
Q Consensus 631 ~v~~~~~s-~~~~~l~~~~~d 650 (1132)
.+.+++|+ ++++.|++++..
T Consensus 272 ~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 272 QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp BEEEEEEESTTSCEEEEEEBC
T ss_pred CcEEEEEecCCCCEEEEEecC
Confidence 68899998 888877666554
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.15 E-value=1.5e-09 Score=119.26 Aligned_cols=269 Identities=9% Similarity=-0.029 Sum_probs=172.2
Q ss_pred CeEEEEEcCCC----cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe-------
Q 001176 356 QTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF------- 424 (1132)
Q Consensus 356 ~~lla~g~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~------- 424 (1132)
.+++++...++ .|.+.|..+++.+.+ + -.+. .+ .+++||||+++.++.
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~--i----------------~vG~-~P--~i~~spDg~~lyVan~~~~r~~ 90 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGH--S----------------LGAF-LS--LAVAGHSGSDFALASTSFARSA 90 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEE--E----------------EECT-TC--EEEECTTSSCEEEEEEEETTTT
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEE--E----------------eCCC-CC--ceEECCCCCEEEEEcccccccc
Confidence 34555555455 888999999987754 1 1122 24 799999999998886
Q ss_pred ---CCCeEEEEEecCCCceeeeeeeecc-----cCCEEEEEEecCCCcEEEEEEcC--CCcEEE--EECCCCeEEEEecC
Q 001176 425 ---SKHIVHLYTYNPTGELRQHLEIDAH-----VGGVNDIAFAHPNKQLCIVTCGD--DKMIKV--WDVVAGRKQYTFEG 492 (1132)
Q Consensus 425 ---~dg~i~iwd~~~~~~~~~~~~l~~h-----~~~v~~v~~s~d~~~~~l~s~~~--dg~v~v--wd~~~~~~~~~~~~ 492 (1132)
.++.|.+||..+++.+.... +.+. ......++|+|||+. ++.+.. +..|.+ +|+.+ +.++.-
T Consensus 91 ~G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v 164 (368)
T 1mda_H 91 KGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKS 164 (368)
T ss_dssp SSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEEC
T ss_pred cCCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEEC
Confidence 36889999999988766432 2100 123568999999994 555543 467888 99877 444432
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC----CCceE-----EecCCCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 493 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY----LGSRV-----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 493 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~----~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
- +. ..+.|.+. ..+++.+.||.+.+.|+.+ ..... .+.....+. . ++++..++..+.
T Consensus 165 ~-~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~----- 230 (368)
T 1mda_H 165 A-SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA----- 230 (368)
T ss_dssp S-SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----
T ss_pred C-Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----
Confidence 1 11 12334433 4556677888888888876 22211 111112233 3 566666665542
Q ss_pred CeEEEEeCCCCc--eeeeeccc---------cCCceEEEEEeCCCCEEEEEEc-C--------CeEEEEECCCCeeEEEE
Q 001176 564 SHLVEWNESEGA--IKRTYSGF---------RKRSLGVVQFDTTRNRFLAAGD-E--------FQIKFWDMDNMNMLTTV 623 (1132)
Q Consensus 564 ~~i~~wd~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~-d--------g~i~iwd~~~~~~~~~~ 623 (1132)
+.+.+.|..++. .+..+... .......++++|++++++++.. . +.+.++|+.+.+.+..+
T Consensus 231 ~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i 310 (368)
T 1mda_H 231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEE
Confidence 568889986532 23322211 0001222689999998887543 2 35669999999999888
Q ss_pred eCCCCCCCcceEEEcCCCC-EEEEEe-CCCcEEEEEcCCcceeeeecc
Q 001176 624 DADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRMLE 669 (1132)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 669 (1132)
.... ....++|+|||+ ++++.. .++.|.++|+.++ +..+.+.
T Consensus 311 ~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 311 SNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp EEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred ECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 7543 468999999998 455566 5899999999998 6666654
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.14 E-value=1.2e-08 Score=123.71 Aligned_cols=238 Identities=10% Similarity=0.055 Sum_probs=147.3
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeeccc-------CCE-EEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV-------GGV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 488 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~-------~~v-~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~ 488 (1132)
+..|++++.++.|.-+|..+|+.+-....-.... ..+ ..++. ++. .|+.++.|+.|..+|..+|+.+.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g--~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKG--KVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECC--EEEEEccCCEEEEEECCCCCEee
Confidence 5667777788899999999988654321100000 001 11222 244 58888899999999999999987
Q ss_pred EecCC--CCCeEEEEeecc-CCccEEEEEe------cCCeEEEEEcCCCCceEEecCCC---------------------
Q 001176 489 TFEGH--EAPVYSVCPHHK-ESIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPG--------------------- 538 (1132)
Q Consensus 489 ~~~~h--~~~v~~i~~~~~-~~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~--------------------- 538 (1132)
++... ......+...|. .+ ..++.++ .++.|+.||..+++.+..+....
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 76542 111111111110 02 3444443 37899999999999877654210
Q ss_pred ----------CeEEEEEEcCCCCEEEEEecCCC-----------CC----CeEEEEeCCCCceeeeeccccC--------
Q 001176 539 ----------NWCTMMAYSADGTRLFSCGTSKE-----------GE----SHLVEWNESEGAIKRTYSGFRK-------- 585 (1132)
Q Consensus 539 ----------~~v~~~~~s~~~~~l~~~~~~~~-----------~~----~~i~~wd~~~~~~~~~~~~~~~-------- 585 (1132)
.....++++|++..++.+..++. ++ +.|..+|..+|+.+..++....
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 01125788898888888764210 01 2499999999999988764211
Q ss_pred CceEEEEEeCCCC---EEEEEEcCCeEEEEECCCCeeEEEEeCCC-----------------------------------
Q 001176 586 RSLGVVQFDTTRN---RFLAAGDEFQIKFWDMDNMNMLTTVDADG----------------------------------- 627 (1132)
Q Consensus 586 ~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------------------- 627 (1132)
..........+|+ .++.++.+|.++++|..+|+.+.......
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 1122222333554 68888899999999999999885443211
Q ss_pred --CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001176 628 --GLPASPRLRFNKEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 628 --~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
+...-..++++|+..++++...+....++...
T Consensus 385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 418 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIP 418 (689)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCS
T ss_pred cccccCCCcceECCCCCEEEEeccccceeeeecc
Confidence 00011237889988899888887776666543
No 233
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.13 E-value=7.3e-08 Score=108.60 Aligned_cols=148 Identities=13% Similarity=0.056 Sum_probs=99.4
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCC---------CCCeEE-EEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGH---------EAPVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 535 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h---------~~~v~~-i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 535 (1132)
.++.++.++.|..+|..+|+.+..+... ...+.+ +.. ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 5778888999999999999988766542 122222 222 23678889999999999999988877665
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCc----eEEEEEeCCCCEEEEEEcCCeEEE
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEFQIKF 611 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~i 611 (1132)
............ +..++.++. ++.|+.+|..+|+.+..+....... ....... +..+++++.++.+..
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEEE--CCEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 443221111221 345666543 6789999999999887776532200 0112222 457788888999999
Q ss_pred EECCCCeeEEEEeC
Q 001176 612 WDMDNMNMLTTVDA 625 (1132)
Q Consensus 612 wd~~~~~~~~~~~~ 625 (1132)
+|..+++.+.....
T Consensus 203 ~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 203 VLMEQGQMIWQQRI 216 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999998877654
No 234
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.11 E-value=1.6e-08 Score=110.01 Aligned_cols=233 Identities=12% Similarity=0.068 Sum_probs=153.0
Q ss_pred CCcCeEEEEEcCCCC-eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 404 AAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 404 h~~~V~~v~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
........+|+|+|+ +++++..++.|..|+.. ++ .. .+..+...+..++++++|+ ++++...++.|.+||..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECCC
Confidence 444677899999998 56667778899999874 43 22 3444567789999999998 66666666889999975
Q ss_pred CCeEEEEec---C-CCCCeEEEEeeccCCccEEEE----Eec-------------CCeEEEEEcCCCCceEEecCCCCeE
Q 001176 483 AGRKQYTFE---G-HEAPVYSVCPHHKESIQFIFS----TAI-------------DGKIKAWLYDYLGSRVDYDAPGNWC 541 (1132)
Q Consensus 483 ~~~~~~~~~---~-h~~~v~~i~~~~~~~~~~l~s----~s~-------------dg~i~~wd~~~~~~~~~~~~~~~~v 541 (1132)
++...... + ....+..+++.+ +|.+.++ |.. .+.|..||..+++..... .....
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d~--dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVAR--DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEECT--TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred -CCEEEEEeccCCCccCCCCCEEECC--CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 65432211 1 123466788866 4477775 322 245777776555544332 33456
Q ss_pred EEEEEcCCCCEEEEEecCC--CCCCeEEEEeCCCCcee--eeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 001176 542 TMMAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 617 (1132)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1132)
..++|+||++.|+.+.... .+.+.|++|++..+... ..+..........++++++|+..++ ..+ .|.+|+. ++
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DG 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TS
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CC
Confidence 7899999999887765310 01367999998755411 1121111224556889999985444 444 5999998 57
Q ss_pred eeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001176 618 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 654 (1132)
Q Consensus 618 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1132)
+.+..+..+. .+.+++|+++++.|++++.++..+
T Consensus 268 ~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 268 QLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp CEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 7777776543 478999999999898888764333
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.07 E-value=5.6e-08 Score=117.54 Aligned_cols=284 Identities=9% Similarity=0.052 Sum_probs=179.5
Q ss_pred EEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCC
Q 001176 359 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 438 (1132)
Q Consensus 359 la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~ 438 (1132)
+++++.++.|.-+|..+|+.+ |................+ .....+++ ++..|++++.|+.|..+|..+|+
T Consensus 80 vyv~~~~~~v~AlD~~tG~~~-------W~~~~~~~~~~~~~~~~~-~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~ 149 (677)
T 1kb0_A 80 MYVSASWSVVHAIDTRTGNRI-------WTYDPQIDRSTGFKGCCD-VVNRGVAL--WKGKVYVGAWDGRLIALDAATGK 149 (677)
T ss_dssp EEEECGGGCEEEEETTTTEEE-------EEECCCCCGGGGGGSSSC-SCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred EEEECCCCeEEEEECCCCcEE-------EEEcCCCCcccccccccc-CCCCCceE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 556666899999999999864 433221110000000000 00012222 56788888999999999999998
Q ss_pred ceeeeeeeecc-c----CCEEEEEEecCCCcEEEEEEcC------CCcEEEEECCCCeEEEEecCCCCC-----------
Q 001176 439 ELRQHLEIDAH-V----GGVNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEGHEAP----------- 496 (1132)
Q Consensus 439 ~~~~~~~l~~h-~----~~v~~v~~s~d~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~~~h~~~----------- 496 (1132)
.+-.. ..+ . ..+.+.-...++. ++.++. ++.|+.+|..+|+.+.++......
T Consensus 150 ~~W~~---~~~~~~~~~~~~~~~p~v~~~~---v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~ 223 (677)
T 1kb0_A 150 EVWHQ---NTFEGQKGSLTITGAPRVFKGK---VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMK 223 (677)
T ss_dssp EEEEE---ETTTTCCSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred EEeee---cCCcCcCcCcccccCcEEECCE---EEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccc
Confidence 76532 222 1 1122111112343 444442 799999999999998877543211
Q ss_pred ---------------------eEEEEeeccCCccEEEEEecCC-------------------eEEEEEcCCCCceEEecC
Q 001176 497 ---------------------VYSVCPHHKESIQFIFSTAIDG-------------------KIKAWLYDYLGSRVDYDA 536 (1132)
Q Consensus 497 ---------------------v~~i~~~~~~~~~~l~s~s~dg-------------------~i~~wd~~~~~~~~~~~~ 536 (1132)
...+++++.. .+++.++.++ .|..+|.++++.+..+..
T Consensus 224 ~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~--~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~ 301 (677)
T 1kb0_A 224 RAARTWDPSGKWWEAGGGGTMWDSMTFDAEL--NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE 301 (677)
T ss_dssp HHHTTSCGGGCHHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred cccccccccCceeEeCCCcccccceeEcCCC--CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec
Confidence 1234555543 6777776654 599999999988876554
Q ss_pred CCC---------eEEEEEEcCCC---CEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCC----------ce------
Q 001176 537 PGN---------WCTMMAYSADG---TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR----------SL------ 588 (1132)
Q Consensus 537 ~~~---------~v~~~~~s~~~---~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~----------~v------ 588 (1132)
..+ ....+....+| +.++.+. .++.++++|..+|+.+..+...... .+
T Consensus 302 ~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~----~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~ 377 (677)
T 1kb0_A 302 TPGDNWDYTSTQPMILADIKIAGKPRKVILHAP----KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAAR 377 (677)
T ss_dssp STTCCSCCCCCSCCEEEEEEETTEEEEEEEECC----TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGG
T ss_pred CCCcccccccCCCcEEEecccCCcEeeEEEEEC----CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccC
Confidence 211 12223333467 4566654 4889999999999988765422110 01
Q ss_pred ------------------EEEEEeCCCCEEEEEEcC-------------------------------------------C
Q 001176 589 ------------------GVVQFDTTRNRFLAAGDE-------------------------------------------F 607 (1132)
Q Consensus 589 ------------------~~~~~~~~~~~l~~~~~d-------------------------------------------g 607 (1132)
..++++|++..+++...+ |
T Consensus 378 ~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 457 (677)
T 1kb0_A 378 DGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFG 457 (677)
T ss_dssp CTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEE
T ss_pred cCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCcc
Confidence 146889998888875432 7
Q ss_pred eEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 608 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
.|..||+.+++.+....... .+....+..++.++++++.||.+++||..++ +.+..+
T Consensus 458 ~l~A~D~~tG~~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG-~~lw~~ 514 (677)
T 1kb0_A 458 RLLAWDPVAQKAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATG-EKLWEA 514 (677)
T ss_dssp EEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEE
T ss_pred EEEEEeCCCCcEEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCC-ceeeee
Confidence 89999999999988876532 3455667778889999999999999999999 444433
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.07 E-value=2.3e-09 Score=121.86 Aligned_cols=342 Identities=15% Similarity=0.095 Sum_probs=202.1
Q ss_pred EEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEe----------cCCeEEEEEcCCCCceEEe
Q 001176 465 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA----------IDGKIKAWLYDYLGSRVDY 534 (1132)
Q Consensus 465 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s----------~dg~i~~wd~~~~~~~~~~ 534 (1132)
+.+.||+..|.|+|+-+.+++.++.+.-....-. .-|-..+....++..+ .+|. ... .
T Consensus 16 ~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~-~g~g~~~es~~~l~~~~~~~~~~~~~~~g~----------~~~-~ 83 (595)
T 1fwx_A 16 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAANGK----------RIH-D 83 (595)
T ss_dssp EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCCHHHHHHHHHTTC----------SSC-C
T ss_pred EEEeeCCcCceEEEEecCCcceEEEeeeecCCCC-cccCCchhHHHHHhccCCccchhhhhccCc----------eec-c
Confidence 4788999999999999999999887752110000 0000000000011000 0010 000 0
Q ss_pred cCCCCeEEEEEE---cCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEE-e-CCCCEEEEEE-----
Q 001176 535 DAPGNWCTMMAY---SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-D-TTRNRFLAAG----- 604 (1132)
Q Consensus 535 ~~~~~~v~~~~~---s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~----- 604 (1132)
.+..+. ..+++ .+||++++.+.. .+.+|.+.|+.+.++...+.-........+++ + |+++++++++
T Consensus 84 ~gd~hh-~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p 159 (595)
T 1fwx_A 84 NGDLHH-VHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETP 159 (595)
T ss_dssp CCCBCC-EEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEE
T ss_pred cCCCCc-cccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccc
Confidence 001111 23333 248899988753 46789999999999888554433335778887 5 9999999985
Q ss_pred -------------cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcE-EEEEcCCcceeeeeccc
Q 001176 605 -------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI-KILANSDGVRLLRMLEG 670 (1132)
Q Consensus 605 -------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i-~iw~~~~~~~~~~~~~~ 670 (1132)
.++.+.++|..+.+.+..+...+. ...++++|+|+++++.+.+..- ...+..+.
T Consensus 160 ~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~~~~i~~~~~--------- 227 (595)
T 1fwx_A 160 LVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEKGMTLPEMTA--------- 227 (595)
T ss_dssp SSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTC---------
T ss_pred cCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcccCcchhhccc---------
Confidence 345799999999999988876432 3678899999999998865321 00000000
Q ss_pred cccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecC
Q 001176 671 RAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIP 750 (1132)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~ 750 (1132)
.....+.+++..
T Consensus 228 --------------------------------------------------------------------~~~d~v~V~~~~ 239 (595)
T 1fwx_A 228 --------------------------------------------------------------------AEMDHIVVFNIA 239 (595)
T ss_dssp --------------------------------------------------------------------CSEEEEEEEEHH
T ss_pred --------------------------------------------------------------------cccceEEEeecc
Confidence 000222233322
Q ss_pred CCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccC
Q 001176 751 DISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDI 830 (1132)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 830 (1132)
... .+.++|+.... +.|.|.|....+ +......+
T Consensus 240 ~~~----------------------~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~I 273 (595)
T 1fwx_A 240 EIE----------------------KAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYI 273 (595)
T ss_dssp HHH----------------------HHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEE
T ss_pred cee----------------------EeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEE
Confidence 100 02233333222 335555543210 11111111
Q ss_pred CCCCCCCCCeeEEEEeeCCCEEEEee--CCeEEEEECCCCe------------EEEEeeCCCCCeEEEEEeCCCCCeEEE
Q 001176 831 NESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFK------------VMTMFMSPPPAATFLAFHPQDNNIIAI 896 (1132)
Q Consensus 831 ~~~~h~~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~------------~~~~~~~~~~~i~~l~~sp~~~~~las 896 (1132)
+. .....++.++|||+++++++ +++|.++|+.+.+ ...... -......++|+| +|...++
T Consensus 274 pv----g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t 347 (595)
T 1fwx_A 274 PI----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTS 347 (595)
T ss_dssp EE----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEE
T ss_pred ec----CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEE
Confidence 11 23456899999999999887 7899999998653 223332 335678999999 7766667
Q ss_pred EeCCCcEEEEEccc----------ceeeeeeccccCCe-----eEEEEcCCCCEEEEEcC---CCc----------EEEE
Q 001176 897 GMEDSSVQIYNVRV----------DEVKTKLKGHQNRI-----TGLAFSPTLNALVSSGA---DAQ----------LCMW 948 (1132)
Q Consensus 897 g~~dg~v~iwd~~~----------~~~~~~l~~h~~~V-----~~l~~spdg~~l~s~~~---D~~----------i~iw 948 (1132)
...|+.|.+||+.+ .+.+.++..|..+- .++.++|||++|+++.. |+. -.++
T Consensus 348 ~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~ 427 (595)
T 1fwx_A 348 LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLI 427 (595)
T ss_dssp ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEE
T ss_pred EecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEE
Confidence 78899999999987 45667776654421 23456899999998753 442 2789
Q ss_pred ECCCcc
Q 001176 949 SIDKWE 954 (1132)
Q Consensus 949 d~~~~~ 954 (1132)
|+.+++
T Consensus 428 dis~~~ 433 (595)
T 1fwx_A 428 DISGDK 433 (595)
T ss_dssp ECSSSS
T ss_pred EcCCCc
Confidence 996544
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.06 E-value=1.3e-07 Score=106.58 Aligned_cols=271 Identities=10% Similarity=0.030 Sum_probs=167.3
Q ss_pred EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCCCeEEEEEecCC
Q 001176 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT 437 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~dg~i~iwd~~~~ 437 (1132)
.+.+++.++.|..+|..+|+.+ |.......... .......+.+ ....++..+.+++.++.|..+|..++
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~-------W~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG 123 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEI-------WSVSLAEKDGW---FSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDG 123 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEE-------EEEECCC---C---CSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTC
T ss_pred EEEEEcCCCeEEEEEccCCcee-------eeecCcccccc---ccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCC
Confidence 3666777899999999998864 32211000000 0000122222 22225667888889999999999998
Q ss_pred CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCe-----EEEEeeccCCccEEE
Q 001176 438 GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV-----YSVCPHHKESIQFIF 512 (1132)
Q Consensus 438 ~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v-----~~i~~~~~~~~~~l~ 512 (1132)
+.+-.. ............ .++ .++.++.++.|..+|..+|+.+..+....... ...... +..++
T Consensus 124 ~~~W~~---~~~~~~~~~p~~-~~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~----~~~v~ 192 (376)
T 3q7m_A 124 TVAWQT---KVAGEALSRPVV-SDG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA----FGAAV 192 (376)
T ss_dssp CEEEEE---ECSSCCCSCCEE-ETT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE----TTEEE
T ss_pred CEEEEE---eCCCceEcCCEE-ECC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE----CCEEE
Confidence 865422 212111111222 233 57778889999999999999887765432211 111221 25688
Q ss_pred EEecCCeEEEEEcCCCCceEEecCCCCe----EEE---EEEcC--CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccc
Q 001176 513 STAIDGKIKAWLYDYLGSRVDYDAPGNW----CTM---MAYSA--DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 583 (1132)
Q Consensus 513 s~s~dg~i~~wd~~~~~~~~~~~~~~~~----v~~---~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1132)
.++.++.+..+|..+++........... +.. +...| .+..++.++. ++.+..+|..+|+.+......
T Consensus 193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~----~g~l~~~d~~tG~~~w~~~~~ 268 (376)
T 3q7m_A 193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY----NGNLTALDLRSGQIMWKRELG 268 (376)
T ss_dssp ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT----TSCEEEEETTTCCEEEEECCC
T ss_pred EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec----CcEEEEEECCCCcEEeeccCC
Confidence 8888999999999988877665432210 000 11111 2455666543 667999999999987765532
Q ss_pred cCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcc
Q 001176 584 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 662 (1132)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 662 (1132)
....+.. ++..++.++.++.|..+|..+++.+........ ..+..... .+..|++++.+|.|.++|..+++
T Consensus 269 ---~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 269 ---SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp ---CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred ---CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 2333433 367888888999999999999998877652211 12223333 25688889999999999999983
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.04 E-value=4.8e-09 Score=115.97 Aligned_cols=294 Identities=10% Similarity=-0.007 Sum_probs=180.4
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCce
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 588 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 588 (1132)
..+..++.++.|..|| .+++...........+.++...++|...+ ++ .. |..+|. +++.+..+..... ..
T Consensus 31 g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t-----~~-l~~~d~-~g~~~~~~~~~~~-~~ 100 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYF-GS-----DK-VYAINP-DGTEKWRFDTKKA-IV 100 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECC-SS-----CE-EEEECC-CGGGGGGSCC------
T ss_pred CeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEE-ec-----Cc-EEEECC-CCcEEEEEECCCC-cc
Confidence 4567777888899999 66666555444444567777777776444 33 23 888886 6665544443222 22
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 589 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
....+. +..++.++.++.|..+|.. ++.......... .+.++...+++. +..++.++.|..+|.. + +....+
T Consensus 101 ~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~--~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g-~~~~~~ 172 (330)
T 3hxj_A 101 SDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKA--IYATPIVSEDGT-IYVGSNDNYLYAINPD-G-TEKWRF 172 (330)
T ss_dssp CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSC--CCSCCEECTTSC-EEEECTTSEEEEECTT-S-CEEEEE
T ss_pred cCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCc--eeeeeEEcCCCE-EEEEcCCCEEEEECCC-C-CEeEEE
Confidence 223333 5667888889999999998 777766654432 466777777776 5567788899999987 5 222221
Q ss_pred cccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeee
Q 001176 669 EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 748 (1132)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~ 748 (1132)
...
T Consensus 173 ~~~----------------------------------------------------------------------------- 175 (330)
T 3hxj_A 173 KTN----------------------------------------------------------------------------- 175 (330)
T ss_dssp ECS-----------------------------------------------------------------------------
T ss_pred ecC-----------------------------------------------------------------------------
Confidence 110
Q ss_pred cCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccc
Q 001176 749 IPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTN 828 (1132)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 828 (1132)
...+.++.+.+++... +++ +.+..+| . ++.....
T Consensus 176 --------------------~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~----------------------~g~~~~~ 209 (330)
T 3hxj_A 176 --------------------DAITSAASIGKDGTIY-FGS--DKVYAIN-P----------------------DGTEKWN 209 (330)
T ss_dssp --------------------SCCCSCCEECTTCCEE-EES--SSEEEEC-T----------------------TSCEEEE
T ss_pred --------------------CCceeeeEEcCCCEEE-EEe--CEEEEEC-C----------------------CCcEEEE
Confidence 0112223333444433 333 4455543 1 1111111
Q ss_pred cCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEc
Q 001176 829 DINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV 908 (1132)
Q Consensus 829 ~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~ 908 (1132)
... . ...+.+++.+++|...+...++.|..+|. +++.+..+......+.++.+.+ ++ .|.+++.+|.|..+|.
T Consensus 210 ~~~---~-~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 210 FYA---G-YWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp ECC---S-SCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEECT
T ss_pred Ecc---C-CcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEECC
Confidence 111 1 34567788888887666655788888884 5666666665555455666765 45 5556888889999995
Q ss_pred ccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCC
Q 001176 909 RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 909 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~ 952 (1132)
+++.+..+......+.++...++|.+. .++.+|.+++...+.
T Consensus 283 -~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 283 -DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFNLE 324 (330)
T ss_dssp -TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC--
T ss_pred -CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEeccc
Confidence 677777666556667888887887654 488899998887654
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.03 E-value=6e-08 Score=106.34 Aligned_cols=238 Identities=12% Similarity=0.074 Sum_probs=146.8
Q ss_pred cCCceEEee-cccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-
Q 001176 779 NSGLSLLAL-ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 856 (1132)
Q Consensus 779 ~~g~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s- 856 (1132)
.++++|++. ..++.|.++|+.+....+.-.... +..++... .+ ...-..+..+||| .++++.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~i---------e~~~~~~~--~g----~s~Ph~~~~~pdG-i~Vs~~g 156 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVI---------EPEEVKKV--SG----YSRLHTVHCGPDA-IYISALG 156 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEE---------CHHHHHHH--HC----EEEEEEEEECSSC-EEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeee---------chhhcccc--cC----CCcccceeECCCe-EEEEcCC
Confidence 778877664 456889999975432221111000 00000000 00 1123457788999 555543
Q ss_pred C------CeEEEEECCCCeEEEEeeCCCC---CeEEEEEeCCCCCeEEEEe-------------------CCCcEEEEEc
Q 001176 857 G------GKVSLFNMMTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGM-------------------EDSSVQIYNV 908 (1132)
Q Consensus 857 d------g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~sp~~~~~lasg~-------------------~dg~v~iwd~ 908 (1132)
+ |.|.++|..+++.+.++..... --..+-|+| +++.+++.. .+.+|.+||+
T Consensus 157 ~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 157 NEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp ETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred CcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 4 6899999999999999873322 234588899 888887774 3679999999
Q ss_pred ccceeeeeeccc--cCCeeEEEE--cCCCCEEEEEc------CCCcEEEEECCCcccccceeeeCCC----CCCC--C--
Q 001176 909 RVDEVKTKLKGH--QNRITGLAF--SPTLNALVSSG------ADAQLCMWSIDKWEKLKSRFIQAPA----GRQS--P-- 970 (1132)
Q Consensus 909 ~~~~~~~~l~~h--~~~V~~l~~--spdg~~l~s~~------~D~~i~iwd~~~~~~~~~~~~~~~~----~~~~--~-- 970 (1132)
.+++.+.++..- ......+.| +|+++++..++ .+++|.+|..+.++-.....+.... +..+ +
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 999888877642 123445656 99999877766 4668888776654321111111111 0000 0
Q ss_pred ----CCCceeEEECCCCcEEEEEe--CCeEEEEeCC-C---CceeecCCCCC-----C------CCCeEEEEEccCCCEE
Q 001176 971 ----LVGETKVQFHNDQTHLLVVH--ESQISVYDSK-L---ECSRSWSPKDA-----L------PAPISSAIYSCDGLLV 1029 (1132)
Q Consensus 971 ----~~~v~~~~~s~dg~~l~~~~--d~~v~vwd~~-~---~~~~~~~~~~~-----h------~~~i~~i~~s~dg~~l 1029 (1132)
......+.+|+||++|.++. .+.|.+||+. . +.+..+..+-. | ...-..+++||||++|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 13468899999999999974 6789999982 2 33333322100 0 1134779999999999
Q ss_pred EEEe
Q 001176 1030 YAGF 1033 (1132)
Q Consensus 1030 as~~ 1033 (1132)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9988
No 240
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.00 E-value=6.3e-08 Score=106.19 Aligned_cols=238 Identities=15% Similarity=0.144 Sum_probs=151.3
Q ss_pred Ec--cCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCC-CcCeEEEEEcCCCCeEEEEeCC-
Q 001176 351 FH--PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA-AISVNRCVWGPDGLMLGVAFSK- 426 (1132)
Q Consensus 351 ~s--pdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~spdg~~las~~~d- 426 (1132)
++ ++++++++.|..++.|.|.|+.+..... +..+..+ ...+.... ...-..+..+||| .++++..+
T Consensus 89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p-~~~k~ie--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~ 158 (462)
T 2ece_A 89 GKPNIERRFLIVPGLRSSRIYIIDTKPNPREP-KIIKVIE--------PEEVKKVSGYSRLHTVHCGPDA-IYISALGNE 158 (462)
T ss_dssp CCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC-EEEEEEC--------HHHHHHHHCEEEEEEEEECSSC-EEEEEEEET
T ss_pred cCCCccCCEEEEccCCCCeEEEEECCCCCCCc-eeeeeec--------hhhcccccCCCcccceeECCCe-EEEEcCCCc
Confidence 37 8999888899999999999997542110 0011110 00001011 1134567888999 66666554
Q ss_pred -----CeEEEEEecCCCceeeeeeeeccc-CCEEEEEEecCCCcEEEEEEc-------------------CCCcEEEEEC
Q 001176 427 -----HIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG-------------------DDKMIKVWDV 481 (1132)
Q Consensus 427 -----g~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~-------------------~dg~v~vwd~ 481 (1132)
|.|.+.|.++.+.+.... ..... .--..+.|+|+++ .+++.. .+.+|.+||+
T Consensus 159 ~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 159 EGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp TSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred CCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 789999999988665332 12222 2234688999999 677764 4689999999
Q ss_pred CCCeEEEEecCC-C-CCeEEEEeeccCCccEEEEEe------cCCeEEEEEcCCCCceE--E--ecCC------------
Q 001176 482 VAGRKQYTFEGH-E-APVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRV--D--YDAP------------ 537 (1132)
Q Consensus 482 ~~~~~~~~~~~h-~-~~v~~i~~~~~~~~~~l~s~s------~dg~i~~wd~~~~~~~~--~--~~~~------------ 537 (1132)
.+++.+.++.-- . .....+.|..++++.++..++ .+++|.+|..+.+.... . +...
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 999888887642 1 234456564444556666655 56788887665422111 1 1110
Q ss_pred ----CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC---CceeeeeccccC-------------CceEEEEEeCCC
Q 001176 538 ----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRK-------------RSLGVVQFDTTR 597 (1132)
Q Consensus 538 ----~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~-------------~~v~~~~~~~~~ 597 (1132)
......+.+|+||++|.++.. +.+.|.+||+.. .+.+..+..... .....+.++|||
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG 392 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG 392 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS
T ss_pred cccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC
Confidence 245678999999999998875 567899999853 344444433210 024668999999
Q ss_pred CEEEEEE
Q 001176 598 NRFLAAG 604 (1132)
Q Consensus 598 ~~l~~~~ 604 (1132)
++|+++.
T Consensus 393 k~LyVaN 399 (462)
T 2ece_A 393 RRVYVTN 399 (462)
T ss_dssp SEEEEEC
T ss_pred CEEEEEc
Confidence 9999875
No 241
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.95 E-value=0.00028 Score=83.69 Aligned_cols=457 Identities=7% Similarity=-0.043 Sum_probs=242.7
Q ss_pred CcCeEEEEEcCCCCeEEEEe-CCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001176 405 AISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 483 (1132)
Q Consensus 405 ~~~V~~v~~spdg~~las~~-~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~ 483 (1132)
-..+..++|++.+..|..+. ..+.|..+++++...... .+.........+++.+.+.. ++++-...+.|.+.++..
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~--v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE--EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE--EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCC
Confidence 34578999999777666554 467899999876532111 22222356889999997664 556666788999999765
Q ss_pred CeEEEEecCCCCCeEEEEeeccCCccEEEEE-ecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC
Q 001176 484 GRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 562 (1132)
Q Consensus 484 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1132)
......+...-....+|++.|.. |.++++- +..+.|...+++.................+++++++..|+.+-. +
T Consensus 116 ~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~---~ 191 (619)
T 3s94_A 116 SLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---K 191 (619)
T ss_dssp CSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---T
T ss_pred CCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---C
Confidence 43322332444557788888754 2344443 22456777777655444444445567889999998888877743 3
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc-CC
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN-KE 640 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~ 640 (1132)
...|...|+..........+... ....+++..+ .++.+. ..+.|...|..+++....+.... .....+++. +.
T Consensus 192 ~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~~~~ 266 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDI--FSPMDIHAFSQQ 266 (619)
T ss_dssp TCCEEEESSSCCEEC----------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCC--CCCSEEEECCGG
T ss_pred CCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCC--CCCcEEEEEccc
Confidence 56799999875433322221222 2345666544 455543 66788888888777655554321 122333332 21
Q ss_pred CCEEEEEeCC--------CcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCC
Q 001176 641 GSLLAVTTSD--------NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 712 (1132)
Q Consensus 641 ~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 712 (1132)
.+-. +... ..+.+-....+ .+.+.-.. + +.+.+
T Consensus 267 ~qp~--~~n~C~~~ng~Cs~lCl~~~~~~---------------------------~~~C~C~~-g----~~l~~----- 307 (619)
T 3s94_A 267 RQPN--ATNPCGIDNGGCSHLCLMSPVKP---------------------------FYQCACPT-G----VKLLE----- 307 (619)
T ss_dssp GSCC--CCCTTTTTGGGCSSEEEECSSTT---------------------------SEEEECCT-T----CCBCT-----
T ss_pred cCCC--ccccccCCCCcccceEECCCCCC---------------------------CceEeCCc-h----heecc-----
Confidence 1000 0000 00111000000 00000000 0 00000
Q ss_pred CCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEee-cccc
Q 001176 713 GPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL-ASNA 791 (1132)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~dg 791 (1132)
....+......+++.+..+.|+..++....... ..++.. .-..+..++|.+.+..|..+ ...+
T Consensus 308 -----------d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~----~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~ 371 (619)
T 3s94_A 308 -----------NGKTCKDGATELLLLARRTDLRRISLDTPDFTD----IVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVR 371 (619)
T ss_dssp -----------TSSCBCSSCSEEEEEEESSCEEEEESSSTTCCC----EECCCS-CCSSEEEEEEETTTTEEEEEETTTT
T ss_pred -----------cCcccCCCCceEEEEEcccceEEEecCCCccce----eEEecc-ccCccEEEEEEcCCCeEEEEeCCCC
Confidence 111111122345555556677777776432211 112211 22457789999865555544 4456
Q ss_pred eeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee--CCeEEEEECCCCe
Q 001176 792 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFK 869 (1132)
Q Consensus 792 ~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~ 869 (1132)
.|..++.... ........+ -.....+++...+..|..+. .+.|.+.++....
T Consensus 372 ~I~r~~~~g~----------------------~~~~v~~~~----~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 372 AIRRSFIDGS----------------------GSQFVVTAQ----IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM 425 (619)
T ss_dssp EEEEEETTSC----------------------SCEEEECSS----CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred eEEEEEcCCC----------------------ccEEEEECC----CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence 6766654321 000000111 23467899998777666665 5889999987553
Q ss_pred EEEEeeCCCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEc-CCCcEEE
Q 001176 870 VMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG-ADAQLCM 947 (1132)
Q Consensus 870 ~~~~~~~~~~~i~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~-~D~~i~i 947 (1132)
....+...-.....|++.|..|.+..+-. ..+.|...++............-...++|++++++..|..+. ..+.|..
T Consensus 426 ~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~ 505 (619)
T 3s94_A 426 RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEV 505 (619)
T ss_dssp CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEE
Confidence 32223334466899999994455544432 235666666653332222233345678999998776666554 5577888
Q ss_pred EECCCcc
Q 001176 948 WSIDKWE 954 (1132)
Q Consensus 948 wd~~~~~ 954 (1132)
.+++...
T Consensus 506 ~~~dG~~ 512 (619)
T 3s94_A 506 MNTDGTG 512 (619)
T ss_dssp EESSSCC
T ss_pred EecCCCc
Confidence 8887644
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.94 E-value=8.7e-10 Score=123.31 Aligned_cols=190 Identities=7% Similarity=-0.051 Sum_probs=112.3
Q ss_pred CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
++..+++++.||.|+.||..+|+.+.. +.. +.+.+..+..++. ++++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 678899999999999999999987653 333 4555666667777 677788999999999999988777654321
Q ss_pred CeEEEEeeccC-CccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 496 PVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 496 ~v~~i~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
... ..+|.- .+..+++++.|+.++.||..+++.+..+..+. ...++|++..+++++. ++.|+.||.++|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 011111 23578888999999999999988877665443 2345678888888764 678999999999
Q ss_pred ceeeeeccccCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCeeEEEEeC
Q 001176 575 AIKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1132)
+.+..+.... ....++..+. ..+++++.+|.|+.||..+++.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8876654321 1222333332 5677888999999999999998887764
No 243
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.94 E-value=0.0006 Score=86.48 Aligned_cols=283 Identities=6% Similarity=0.028 Sum_probs=146.2
Q ss_pred eEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC----CCeEEE
Q 001176 347 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLMLGV 422 (1132)
Q Consensus 347 ~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~las 422 (1132)
.|+.+-.+| +++.|+..|.=.+|.+.....-....+.+-+ --..-++|.+++.-.. ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCeEEE
Confidence 556666566 5888888888888887654321000011100 0124467888777532 234554
Q ss_pred Ee---CCCeEEEEEecCCCceeeeeeeecccCCEEEEEEec---CCCcEEEEEEcCCCcEEEEECCCCeEEEEec--CCC
Q 001176 423 AF---SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE--GHE 494 (1132)
Q Consensus 423 ~~---~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~---d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~h~ 494 (1132)
++ .+|.+++..-.-+-.......+.+ ...++.+.... ... +|+.+..+.+ .|+.+.. ..+..+. +-.
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~~-e~veev~~~gf~ 470 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLNG-EEVEETELMGFV 470 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEET-TEEEEECCTTCC
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEeC-Cccccccccccc
Confidence 43 468888876443222222223332 24566665432 223 5565555555 4555422 2222221 221
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 573 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 573 (1132)
.....++...-++ ..++=.. ...|++.+.........+.... ..|...+.+. .+++.+. .+.+.++++..
T Consensus 471 ~~~~TL~~~~l~~-~~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~~fel~~ 541 (1158)
T 3ei3_A 471 DDQQTFFCGNVAH-QQLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALYYLQIHP 541 (1158)
T ss_dssp SSSCEEEEEEETT-TEEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEEEEEEET
T ss_pred CCCCcEEEEEcCC-CeEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEEEEEeeC
Confidence 1122222211111 2222222 2346666665544454555433 3566666543 4555553 24577777766
Q ss_pred CceeeeeccccCCceEEEEEeCC------CCEEEEEEc-CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcC--CCCEE
Q 001176 574 GAIKRTYSGFRKRSLGVVQFDTT------RNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK--EGSLL 644 (1132)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l 644 (1132)
++........-...|.|+++.|. ++++++|.. |++++|+++.+.+.+........ ....++.+.. ...+|
T Consensus 542 ~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L 620 (1158)
T 3ei3_A 542 QELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYL 620 (1158)
T ss_dssp TEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEE
T ss_pred CceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEE
Confidence 54332222122337999998763 368888885 99999999998777765544321 1233443332 34578
Q ss_pred EEEeCCCcEEEEEc
Q 001176 645 AVTTSDNGIKILAN 658 (1132)
Q Consensus 645 ~~~~~dg~i~iw~~ 658 (1132)
.+|-.||.+.-+.+
T Consensus 621 ~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 621 LCALGDGALFYFGL 634 (1158)
T ss_dssp EEEETTSEEEEEEE
T ss_pred EEEeCCCeEEEEEE
Confidence 88888888766654
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.92 E-value=9.1e-08 Score=105.57 Aligned_cols=266 Identities=11% Similarity=0.019 Sum_probs=171.4
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
...+.++.+.++|. +..|+.+ |..+|. +++.+... ...........+. +..|..
T Consensus 59 ~~~~~~~~~~~~g~--l~v~t~~--l~~~d~-~g~~~~~~-------------------~~~~~~~~~~~~~--~~~l~v 112 (330)
T 3hxj_A 59 EIIECRPSIGKDGT--IYFGSDK--VYAINP-DGTEKWRF-------------------DTKKAIVSDFTIF--EDILYV 112 (330)
T ss_dssp GEEEECCEETTTTE--ECCSSCE--EEEECC-CGGGGGGS-------------------CC-----CCEEEE--TTEEEE
T ss_pred CCcccceEEecCCc--EEEecCc--EEEECC-CCcEEEEE-------------------ECCCCcccCceEE--CCEEEE
Confidence 34567788888886 3444444 888886 55543221 0111112222333 556777
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEe
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 502 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~ 502 (1132)
++.++.|..+|.. ++... ....+...+.++...+++. ++.++.++.|..+|.. ++.+..+......+.++..
T Consensus 113 ~t~~~~l~~~d~~-g~~~~---~~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 113 TSMDGHLYAINTD-GTEKW---RFKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp ECTTSEEEEECTT-SCEEE---EEECSSCCCSCCEECTTSC---EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred EecCCEEEEEcCC-CCEEE---EEcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 8888999999988 55433 2333444567777777776 6667888999999988 8877776655555666665
Q ss_pred eccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc
Q 001176 503 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 582 (1132)
Q Consensus 503 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1132)
.. ++. +..++ +.|..+| .++............+.++...++|...+... ++.+..+|. +++.+..+..
T Consensus 185 d~--~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~-----~~gl~~~~~-~g~~~~~~~~ 252 (330)
T 3hxj_A 185 GK--DGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL-----DGHLYAINP-DGTEKWRFKT 252 (330)
T ss_dssp CT--TCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET-----TTEEEEECT-TSCEEEEEEC
T ss_pred cC--CCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC-----CCeEEEECC-CCCEeEEeeC
Confidence 33 334 44444 8899999 66666666665556778888888887665442 456888874 5666665554
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 583 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
... .+..+.+.+++ .+..++.+|.|..+|. +++.+..+.... ..+.++...++|. |..++.+|.+++.....
T Consensus 253 ~~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~--~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 253 GKR-IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGS--WIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SSC-CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSS--CCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CCC-ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCC--ccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 332 33445555555 5677778889999996 677777666543 2567788877776 56688999999876543
No 245
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.88 E-value=0.0005 Score=81.59 Aligned_cols=491 Identities=8% Similarity=-0.008 Sum_probs=259.6
Q ss_pred EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE-eCCCeEEEEEecC
Q 001176 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNP 436 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~-~~dg~i~iwd~~~ 436 (1132)
|+++ ..+.|+.-++.+...... + .+. .-..+..++|++++..|..+ ..++.|..+++++
T Consensus 9 Ll~s--~~~~I~~i~l~~~~~~~~--~---------------~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g 68 (628)
T 4a0p_A 9 LLFS--RRADIRRISLETNNNNVA--I---------------PLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNG 68 (628)
T ss_dssp EEEE--ETTEEEEEESSCTTCEEE--C---------------CCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEE--eCCcEEEEECCCCCcceE--E---------------EcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCC
Confidence 4444 357888888876532110 0 011 23467899999976665544 5578899999876
Q ss_pred CCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEE-e
Q 001176 437 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-A 515 (1132)
Q Consensus 437 ~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~-s 515 (1132)
..... .+.........+++.+.+.+ +.++-...+.|.+.++........+...-....+|++.|.. |.++++- +
T Consensus 69 ~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~-G~lY~tD~g 143 (628)
T 4a0p_A 69 SALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE-GFMYWTEWG 143 (628)
T ss_dssp CSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT-TEEEEEECS
T ss_pred CCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC-CeEEEeCCC
Confidence 53221 12222245678999887765 45566667899999976543322232344567899998754 2444443 2
Q ss_pred cCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeC
Q 001176 516 IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 595 (1132)
Q Consensus 516 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1132)
..+.|...+++......... .......+++++++..|+.+-. +.+.|..+|+..... ..+..... ....+++..
T Consensus 144 ~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~~ 217 (628)
T 4a0p_A 144 GKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQYQ 217 (628)
T ss_dssp SSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEEET
T ss_pred CCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEEEC
Confidence 35678888877655444333 4557889999999888887753 467899999875443 33333222 345677764
Q ss_pred CCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEcCCcceeeeecccccc
Q 001176 596 TRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAM 673 (1132)
Q Consensus 596 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 673 (1132)
..++.+. ..+.|...|..+++....+..... ....+.. ++..+. +..... ..++ .+.........
T Consensus 218 --~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~~n~C~-----~~ng-~C~~~C~~~~~ 284 (628)
T 4a0p_A 218 --DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---GWNECA-----SSNG-HCSHLCLAVPV 284 (628)
T ss_dssp --TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---CCCTTT-----TTGG-GCSSEEEEETT
T ss_pred --CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---cceEec-----cCCC-CcchhhhcCCC
Confidence 3555544 578899999877776666543211 2333332 221110 000000 0000 00000000000
Q ss_pred ccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCC
Q 001176 674 DKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDIS 753 (1132)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~ 753 (1132)
. .+.+.-.. | +.+.++ ...+.. ...+++.+....|+-..+....
T Consensus 285 ~--------------~~~C~C~~---g--~~l~~d----------------~~~C~~-~~~~Ll~s~~~~i~~i~l~~~~ 328 (628)
T 4a0p_A 285 G--------------GFVCGCPA---H--YSLNAD----------------NRTCSA-PTTFLLFSQKSAINRMVIDEQQ 328 (628)
T ss_dssp T--------------EEEEECST---T--CEECTT----------------SSCEEC-CSSEEEEEETTEEEEECCCTTC
T ss_pred C--------------CeeEEcCC---C--cEeccc----------------CCcCcc-ccceeeeeccceEEEEeccccc
Confidence 0 00000000 0 000000 001111 1234444445555555444221
Q ss_pred CCCcceEEecCCcccccceEEEEEecCCceEEeec-ccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCC
Q 001176 754 DPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 832 (1132)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 832 (1132)
.. ...++.. .-..+..++|.+....|..+. ..+.|..++...... ..++.....+
T Consensus 329 ~~----~~~l~~~-~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-------------------~~v~~~~~~~ 384 (628)
T 4a0p_A 329 SP----DIILPIH-SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-------------------FTVVVSSVPS 384 (628)
T ss_dssp CC----CEECCCT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------------EEEEC-----
T ss_pred Cc----eEEEEeh-hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-------------------eEEEEccccc
Confidence 11 1112211 234577899988666565443 356666654321100 0011000000
Q ss_pred CCCCCCCeeEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEEe-eCCCCCeEEEEEeCCCCCeEEEEeCCC--cEEEEE
Q 001176 833 SKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMF-MSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYN 907 (1132)
Q Consensus 833 ~~h~~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~sp~~~~~lasg~~dg--~v~iwd 907 (1132)
... ...+..+|+...++.|..++ .+.|.+.+++. +....+ ........+|++.|..|.++.+-.... .|...+
T Consensus 385 ~~~-~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G-~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~ 462 (628)
T 4a0p_A 385 QNL-EIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG-RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAA 462 (628)
T ss_dssp ----CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEE
T ss_pred ccc-cCCcceEEeeccCCeEEEEcCCCCEEEEEECCC-CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEe
Confidence 001 34578999999888776665 58899999864 444343 344567899999995555555433222 466666
Q ss_pred cccceeeeeeccccCCeeEEEEcCCCCEEEEEc-CCCcEEEEECCCcc
Q 001176 908 VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDKWE 954 (1132)
Q Consensus 908 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~-~D~~i~iwd~~~~~ 954 (1132)
+............-...+.|++.+++..|..+. ..+.|...+++...
T Consensus 463 ~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~ 510 (628)
T 4a0p_A 463 LDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN 510 (628)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc
Confidence 543332222332334578999999877666554 45789999987644
No 246
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.88 E-value=5.1e-08 Score=110.94 Aligned_cols=234 Identities=11% Similarity=0.046 Sum_probs=158.7
Q ss_pred eCCCEEEEee--CCeEEEEECCCCeEEEEeeCCC-CCeEEEEE-e-CCCCCeEEEEe------------------CCCcE
Q 001176 847 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPP-PAATFLAF-H-PQDNNIIAIGM------------------EDSSV 903 (1132)
Q Consensus 847 ~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~-s-p~~~~~lasg~------------------~dg~v 903 (1132)
+||+++.+.. ++.|.+.|+.+.++...+.-.. ..+..+++ + | ++.++.+++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 3999999887 5779999999999888665332 45788888 5 8 778887774 34679
Q ss_pred EEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCCC--------------------------------------cE
Q 001176 904 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA--------------------------------------QL 945 (1132)
Q Consensus 904 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~--------------------------------------~i 945 (1132)
.+.|..+.+...++.--. .-..++++|||+++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999998888876322 346788999999999887553 35
Q ss_pred EEEECCC--cccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE--eCCeEEEEeCCCC-------------ceeecC
Q 001176 946 CMWSIDK--WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLE-------------CSRSWS 1008 (1132)
Q Consensus 946 ~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~-------------~~~~~~ 1008 (1132)
.+.|..+ +... ...+.. + ....++.++|||++++++ .+.+|.++|+... ......
T Consensus 257 ~VID~~~~~~~~~-~~~Ipv--g-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 257 KVVDGRKEASSLF-TRYIPI--A-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp EEEECSGGGCCSS-EEEEEE--E-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred EEEeCcccCCcee-EEEEec--C-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 5666655 2210 001111 1 235689999999999996 4688999999422 122222
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC----------cceecccCCCccccccccCCCCCCcEEEEeCCC
Q 001176 1009 PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET----------LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS 1078 (1132)
Q Consensus 1009 ~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 1078 (1132)
. ...-..++|+|||...++.-.|+.|.+||+++ ...+.++.. +|.| +|......+..+|
T Consensus 329 v----G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqp-----Gh~~~~~g~t~~~- 397 (595)
T 1fwx_A 329 L----GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQP-----GHLKTVMGETLDA- 397 (595)
T ss_dssp C----CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCE-----EEEEETTTTSTTC-
T ss_pred C----CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-cccc-----ccceeccceEeCC-
Confidence 2 45688999999994445567899999999987 334444432 1222 2222222345577
Q ss_pred CCCeEEEEeCCC--cE-----------EEEecCCCc
Q 001176 1079 EPNQIALGMSDG--AV-----------HVVEPSDAE 1101 (1132)
Q Consensus 1079 ~~~~l~s~~~Dg--~i-----------~vW~~~~~~ 1101 (1132)
||++|+++..-. ++ .+.|++.++
T Consensus 398 DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 398 TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 889999876533 33 789997666
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.83 E-value=1.4e-05 Score=84.56 Aligned_cols=224 Identities=10% Similarity=0.021 Sum_probs=145.2
Q ss_pred cCeEEEEEcCCCCeEEEE-eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001176 406 ISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 484 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~ 484 (1132)
..+..++|++++..|..+ ..++.|..++.+++.... .+.........+++++++.. ++++....+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 357799999976655554 457899999998754321 12222246789999998664 4556666789999997643
Q ss_pred eEEEEecCCCCCeEEEEeeccCCccEEEEEec--CCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC
Q 001176 485 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 562 (1132)
Q Consensus 485 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1132)
...............+++++.. +.++++... .+.|..++++.................+++++++..|+.+.. +
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred CEEEEEECCCCCccEEEEeeCC-CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence 3222222222457889998743 234444433 468888888754433333333456789999999888877653 4
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCC
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 641 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1132)
.+.|..+|.........+.+. . ....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.|++
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~-~-~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~ 262 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQ 262 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSC
T ss_pred CCEEEEEecCCCceEEEecCC-C-CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCcc
Confidence 678999998765443333322 2 34556654 45666655 56899999999999988886432 1236788888876
Q ss_pred C
Q 001176 642 S 642 (1132)
Q Consensus 642 ~ 642 (1132)
.
T Consensus 263 ~ 263 (267)
T 1npe_A 263 C 263 (267)
T ss_dssp C
T ss_pred C
Confidence 4
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.78 E-value=2e-06 Score=103.83 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=86.1
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCe----------E-EEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCcee
Q 001176 509 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW----------C-TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 577 (1132)
Q Consensus 509 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~----------v-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1132)
..++.++.++.|.-+|..+++.+..+...... + ..+++ ++..++.++. ++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL----DGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcC----CCEEEEEECCCCCEe
Confidence 56777788889999999888888776543221 0 11222 2456666653 788999999999998
Q ss_pred eeeccccCC---ceEE-EEEeCCCCEEEEEEc------CCeEEEEECCCCeeEEEEeCCCCC------------------
Q 001176 578 RTYSGFRKR---SLGV-VQFDTTRNRFLAAGD------EFQIKFWDMDNMNMLTTVDADGGL------------------ 629 (1132)
Q Consensus 578 ~~~~~~~~~---~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------------------ 629 (1132)
..+...... .+.+ ..+ .+..++++.. +|.|+.+|..+|+.+..+......
T Consensus 141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 877653110 1111 111 1345565543 589999999999999887632110
Q ss_pred -----------CCcceEEEcCCCCEEEEEeCCCc
Q 001176 630 -----------PASPRLRFNKEGSLLAVTTSDNG 652 (1132)
Q Consensus 630 -----------~~v~~~~~s~~~~~l~~~~~dg~ 652 (1132)
.....+++.++..+++.++.++.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 01124678887788888876653
No 249
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.78 E-value=1.7e-09 Score=120.86 Aligned_cols=183 Identities=11% Similarity=0.054 Sum_probs=104.6
Q ss_pred CCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-
Q 001176 461 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN- 539 (1132)
Q Consensus 461 d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~- 539 (1132)
++. .+++++.|+.|+.||..+|+.+.++.. +.+.+..+.. ++..+++++.||.|+.||..+++.+..+..+..
T Consensus 8 ~~~--~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~--~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PET--LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV--EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTT--EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-------CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred eCC--EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc--CCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 355 688999999999999999999988876 4444433332 335777788999999999988877665543321
Q ss_pred eEE-EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 001176 540 WCT-MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 618 (1132)
Q Consensus 540 ~v~-~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1132)
.+. +..+. ++..+++++. ++.++.||..+|+.+..+..+.. ..++|++..+++++.++.|+.||..+++
T Consensus 82 ~~~~sp~~~-~~~~v~~g~~----dg~v~a~D~~tG~~~w~~~~~~~-----~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 82 LVQASPCRS-SDGILYMGKK----QDIWYVIDLLTGEKQQTLSSAFA-----DSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp HHTTCSCC------CCCCEE----EEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSS
T ss_pred ccccCceEe-cCCEEEEEeC----CCEEEEEECCCCcEEEEecCCCc-----ccccccCCEEEEEecCCEEEEEECCCCC
Confidence 110 00111 3445555543 67899999999999887765432 3456788899999999999999999998
Q ss_pred eEEEEeCCCCCCCcceEEEcCCC---CEEEEEeCCCcEEEEEcCCcce
Q 001176 619 MLTTVDADGGLPASPRLRFNKEG---SLLAVTTSDNGIKILANSDGVR 663 (1132)
Q Consensus 619 ~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~~ 663 (1132)
.+..+.... ....++..+. ..+++++.+|.|..||..+++.
T Consensus 152 ~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 152 LRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp CCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred EEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 766554221 1223333332 5677889999999999999843
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.72 E-value=2.7e-05 Score=82.46 Aligned_cols=240 Identities=9% Similarity=-0.015 Sum_probs=149.1
Q ss_pred CeEEEEeCCCeEEEEEecCCCcee--eeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCC
Q 001176 418 LMLGVAFSKHIVHLYTYNPTGELR--QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 495 (1132)
Q Consensus 418 ~~las~~~dg~i~iwd~~~~~~~~--~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 495 (1132)
.+|..+.. +.|+.+++++..... ....+......+..++|++++.. ++++-...+.|..+|+..+.....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 34555543 478889988754210 01112222345789999997764 555666788999999876554333333335
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc
Q 001176 496 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 496 ~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
....+++++.+ +.++++....+.|.+++++.................++++|++..|+.+... ...+.|..+++...
T Consensus 80 ~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~-~~~~~I~~~~~dg~- 156 (267)
T 1npe_A 80 SPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGT- 156 (267)
T ss_dssp CEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTSC-
T ss_pred CccEEEEEecC-CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECC-CCCcEEEEEecCCC-
Confidence 67889987753 2566666677899999987554433333333567899999977776665421 11467888887633
Q ss_pred eeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEe-CCCcE
Q 001176 576 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGI 653 (1132)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i 653 (1132)
....+..........+++++++..|+.+. ..+.|.++|.........+... .....++.. +..|+.+. ..+.|
T Consensus 157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d--~~~lyva~~~~~~v 231 (267)
T 1npe_A 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKTNSV 231 (267)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTTTEE
T ss_pred CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe--CCEEEEEECCCCeE
Confidence 22322211122577899999887777665 5689999999865544444321 133566654 44555444 56899
Q ss_pred EEEEcCCcceeeeec
Q 001176 654 KILANSDGVRLLRML 668 (1132)
Q Consensus 654 ~iw~~~~~~~~~~~~ 668 (1132)
..++..++ +....+
T Consensus 232 ~~~d~~~g-~~~~~i 245 (267)
T 1npe_A 232 IAMDLAIS-KEMDTF 245 (267)
T ss_dssp EEEETTTT-EEEEEE
T ss_pred EEEeCCCC-CceEEE
Confidence 99999888 444444
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.66 E-value=1e-06 Score=91.03 Aligned_cols=212 Identities=11% Similarity=0.006 Sum_probs=141.2
Q ss_pred CeeEEEEeeCCCEEEEee---CCeEEEEECCCCeEEEEeeCCCC-CeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceee
Q 001176 839 SAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 914 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 914 (1132)
....++|++|+.+.++.+ +++|+++|+.+++.+..+.-... ....+++.. +++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCCCcEE
Confidence 357899999875555543 47899999999999988763222 233566653 455555667889999999999998
Q ss_pred eeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeE
Q 001176 915 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 994 (1132)
Q Consensus 915 ~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v 994 (1132)
.++..-... ...+++||+.|+.+..++.|.++|..+.+......+... +
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~------------------~----------- 148 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN------------------G----------- 148 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET------------------T-----------
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC------------------C-----------
Confidence 888532122 234566888777777788999999988653221111100 0
Q ss_pred EEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccc--cccCCCCCCcEE
Q 001176 995 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT--YAVSSNTAHPLV 1072 (1132)
Q Consensus 995 ~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~ 1072 (1132)
.. -...+.+.|. ||+..+....++.|.+.|..+++.+..+......+. .........+..
T Consensus 149 -------~p----------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nG 210 (266)
T 2iwa_A 149 -------HR----------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNG 210 (266)
T ss_dssp -------EE----------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEE
T ss_pred -------cc----------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEE
Confidence 00 2245677777 776555555688999999999999988864311000 000111246679
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1073 IAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1073 ~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
++|+|++.++++++...+++.+-++...+
T Consensus 211 Ia~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 211 IAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99999666678888889999999987654
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.64 E-value=7.2e-06 Score=96.77 Aligned_cols=109 Identities=11% Similarity=0.078 Sum_probs=68.1
Q ss_pred cEEEEEec-CCeEEEEEc-CCCCceEEecCCCCe-----------EEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc
Q 001176 509 QFIFSTAI-DGKIKAWLY-DYLGSRVDYDAPGNW-----------CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 575 (1132)
Q Consensus 509 ~~l~s~s~-dg~i~~wd~-~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1132)
..++.++. ++.|.-+|. .+++.+......... ...+++ ++..++.++. ++.|+.+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA----NGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC----CCEEEEEECCCCC
Confidence 45666666 788888888 777777665443210 011222 3456666643 7789999999999
Q ss_pred eeeeeccccC---CceE-EEEEeCCCCEEEEEEc------CCeEEEEECCCCeeEEEEeC
Q 001176 576 IKRTYSGFRK---RSLG-VVQFDTTRNRFLAAGD------EFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 576 ~~~~~~~~~~---~~v~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 625 (1132)
.+..+..... ..+. ..... +..+++++. ++.|+.+|..+++.+..+..
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 8877653220 0111 11111 345666654 79999999999999887764
No 253
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.64 E-value=0.00011 Score=86.76 Aligned_cols=194 Identities=11% Similarity=0.042 Sum_probs=120.2
Q ss_pred EEEEcCCCcEEEEECCCCeEEEEecCCCCCe---------EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001176 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV---------YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 537 (1132)
Q Consensus 467 l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v---------~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 537 (1132)
++.++.++.|.-+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4555554449999999999987775432210 11222 1257888899999999999999988765543
Q ss_pred CC----eEE-EEEEcC---CCC-EEEEEecCC--CCCCeEEEEeCCCCceeeeeccccC---------------------
Q 001176 538 GN----WCT-MMAYSA---DGT-RLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRK--------------------- 585 (1132)
Q Consensus 538 ~~----~v~-~~~~s~---~~~-~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~--------------------- 585 (1132)
.. .+. ...... +|+ .+++++... ..++.|+.+|..+|+.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 233 455543211 1267899999999998776543110
Q ss_pred -------------------CceEEEEEeCCCCEEEEEEc--------------------C----CeEEEEECCCCeeEEE
Q 001176 586 -------------------RSLGVVQFDTTRNRFLAAGD--------------------E----FQIKFWDMDNMNMLTT 622 (1132)
Q Consensus 586 -------------------~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 622 (1132)
..-...+++|+...++.+.. | +.|..+|..+|+.+-.
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 00123567777788887663 2 6899999999999988
Q ss_pred EeCCCCC----CCcce-EEEc---CCCC---EEEEEeCCCcEEEEEcCCccee
Q 001176 623 VDADGGL----PASPR-LRFN---KEGS---LLAVTTSDNGIKILANSDGVRL 664 (1132)
Q Consensus 623 ~~~~~~~----~~v~~-~~~s---~~~~---~l~~~~~dg~i~iw~~~~~~~~ 664 (1132)
++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..+|+.+
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 359 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQ 359 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEe
Confidence 7643211 01111 2222 4674 7888999999999999999443
No 254
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.62 E-value=5.8e-06 Score=85.37 Aligned_cols=209 Identities=8% Similarity=-0.027 Sum_probs=140.1
Q ss_pred cccceEEeecCCCC--eeEEEEccCCCeEEEEEc--CCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcC
Q 001176 332 LTKTVVRTLNQGSN--VMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 407 (1132)
Q Consensus 332 ~~~~~~~~l~h~~~--V~~~~~spdg~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 407 (1132)
.+.+.+.++.|... ...++|+|||. +.++.+ .++.|.+.|+.+++.+.... +..+ ..
T Consensus 7 ~~~~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~-----------------l~~~-~f 67 (266)
T 2iwa_A 7 YIVEVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHK-----------------MDDS-YF 67 (266)
T ss_dssp EEEEEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEE-----------------CCTT-CC
T ss_pred cCceEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEe-----------------cCCC-cc
Confidence 34567888887644 68999999975 555544 36899999999998765311 1111 11
Q ss_pred eEEEEEcCCCCeEEEE-eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE
Q 001176 408 VNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 486 (1132)
Q Consensus 408 V~~v~~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~ 486 (1132)
...+++. |+.|..+ -.++.+.++|..+.+.+.. +..-.. ....+++||+. ++.+..++.|.++|..+.+.
T Consensus 68 geGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~---i~~g~~--~g~glt~Dg~~--l~vs~gs~~l~viD~~t~~v 138 (266)
T 2iwa_A 68 GEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKN---FTHQMK--DGWGLATDGKI--LYGSDGTSILYEIDPHTFKL 138 (266)
T ss_dssp EEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEE---EECCSS--SCCEEEECSSS--EEEECSSSEEEEECTTTCCE
T ss_pred eEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEE---EECCCC--CeEEEEECCCE--EEEECCCCeEEEEECCCCcE
Confidence 2234454 5555444 4578999999998876653 321111 12446678885 44445688999999999998
Q ss_pred EEEecCCC-----CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------------CCeEEEEEEcC
Q 001176 487 QYTFEGHE-----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------------GNWCTMMAYSA 548 (1132)
Q Consensus 487 ~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~ 548 (1132)
+.++.-.. ...+.+.+. ++...+....++.|.+.|..+++....+... ......++|+|
T Consensus 139 ~~~I~Vg~~~~p~~~~nele~~---dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~ 215 (266)
T 2iwa_A 139 IKKHNVKYNGHRVIRLNELEYI---NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ 215 (266)
T ss_dssp EEEEECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET
T ss_pred EEEEEECCCCcccccceeEEEE---CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC
Confidence 88775321 236677775 3456666667899999999998877766542 13568999999
Q ss_pred CCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 549 DGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
+++.+++++. ..+.++..++...
T Consensus 216 ~~~~lfVTgk---~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 216 ENKRIFVTGK---LWPKLFEIKLHLV 238 (266)
T ss_dssp TTTEEEEEET---TCSEEEEEEEEEC
T ss_pred CCCEEEEECC---CCCeEEEEEEecc
Confidence 9988887763 3566777776543
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.61 E-value=1.7e-05 Score=93.23 Aligned_cols=197 Identities=12% Similarity=0.057 Sum_probs=124.2
Q ss_pred EEEEEcC-CCcEEEEEC-CCCeEEEEecCCCCC-----------eEEEEeeccCC--ccEEEEEecCCeEEEEEcCCCCc
Q 001176 466 CIVTCGD-DKMIKVWDV-VAGRKQYTFEGHEAP-----------VYSVCPHHKES--IQFIFSTAIDGKIKAWLYDYLGS 530 (1132)
Q Consensus 466 ~l~s~~~-dg~v~vwd~-~~~~~~~~~~~h~~~-----------v~~i~~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~ 530 (1132)
.++.++. ++.|.-+|. .+|+.+-++...... ...+++.|..+ ...++.++.|+.+..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4666777 889999999 899998777533211 11233322221 12388888999999999999988
Q ss_pred eEEecCCCC----eEEE-EEEcCCCCEEEEEecCC--CCCCeEEEEeCCCCceeeeeccccCC-----------------
Q 001176 531 RVDYDAPGN----WCTM-MAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRKR----------------- 586 (1132)
Q Consensus 531 ~~~~~~~~~----~v~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~----------------- 586 (1132)
+........ .+.+ ..+ .++ .+++++... ..++.|+.+|.++|+.+..+......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 776544321 1111 111 134 444443111 12678999999999988776543210
Q ss_pred --------------------ceEEEEEeCCCCEEEEEEcC----------------CeEEEEECCCCeeEEEEeCCCCCC
Q 001176 587 --------------------SLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 587 --------------------~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
.-...++.++...++.+..+ +.|..+|..+|+.+-.++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 00135667777888887655 389999999999998876543210
Q ss_pred ----Ccce---EEEc-CCC---CEEEEEeCCCcEEEEEcCCccee
Q 001176 631 ----ASPR---LRFN-KEG---SLLAVTTSDNGIKILANSDGVRL 664 (1132)
Q Consensus 631 ----~v~~---~~~s-~~~---~~l~~~~~dg~i~iw~~~~~~~~ 664 (1132)
.... +... .+| ..++.++.+|.+.++|..+++.+
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 1111 1222 467 56777889999999999999443
No 256
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.58 E-value=1.1e-05 Score=97.29 Aligned_cols=285 Identities=11% Similarity=0.081 Sum_probs=172.1
Q ss_pred EEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCe-EEEEEcCCCCeEEEEeCCCeEEEEEecCC
Q 001176 359 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV-NRCVWGPDGLMLGVAFSKHIVHLYTYNPT 437 (1132)
Q Consensus 359 la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~v~~spdg~~las~~~dg~i~iwd~~~~ 437 (1132)
+++++.++.|.-+|..+|+.+ |.............. ....+ ..+++ ++..|++++.|+.|..+|..+|
T Consensus 69 vyv~~~~~~v~AlD~~tG~~~-------W~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG 137 (668)
T 1kv9_A 69 IYTSMSWSRVIAVDAASGKEL-------WRYDPEVAKVKARTS--CCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTG 137 (668)
T ss_dssp EEEEEGGGEEEEEETTTCCEE-------EEECCCCCGGGGGGC--TTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTC
T ss_pred EEEECCCCeEEEEECCCChhc-------eEECCCCCccccccc--cccCCccceEE--ECCEEEEEcCCCEEEEEECCCC
Confidence 555667899999999999864 433221110000000 00000 11222 3567888889999999999999
Q ss_pred Cceeeeeeeecc--cCCEEEEEEecCCCcEEEEEEcC------CCcEEEEECCCCeEEEEecCCC---C-----------
Q 001176 438 GELRQHLEIDAH--VGGVNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEGHE---A----------- 495 (1132)
Q Consensus 438 ~~~~~~~~l~~h--~~~v~~v~~s~d~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~~~h~---~----------- 495 (1132)
+.+-.... ... ...+.+--...++. ++.+.. ++.|..+|..+|+.+.++.... .
T Consensus 138 ~~~W~~~~-~~~~~~~~~~~~P~v~~~~---v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~ 213 (668)
T 1kv9_A 138 KAIWSQQT-TDPAKPYSITGAPRVVKGK---VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREA 213 (668)
T ss_dssp CEEEEEEC-SCTTSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred CEeeeecc-CCCCCcceecCCCEEECCE---EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccc
Confidence 87653321 111 01111110112443 444432 5899999999999988775210 0
Q ss_pred -----------------CeEEEEeeccCCccEEEEEecCC-------------------eEEEEEcCCCCceEEecCC--
Q 001176 496 -----------------PVYSVCPHHKESIQFIFSTAIDG-------------------KIKAWLYDYLGSRVDYDAP-- 537 (1132)
Q Consensus 496 -----------------~v~~i~~~~~~~~~~l~s~s~dg-------------------~i~~wd~~~~~~~~~~~~~-- 537 (1132)
....+++.+.. .+++.++.++ .|..+|.++++.+..+...
T Consensus 214 ~~~~~g~~~w~~~~gg~~w~~~a~d~~~--~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~ 291 (668)
T 1kv9_A 214 AKTWQGDQYWKLGGGGTVWDSMAYDPEL--DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPG 291 (668)
T ss_dssp HTTCCSSCHHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT
T ss_pred cccCCccceeeeCCCCccccceEEcCCC--CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCC
Confidence 01124554433 6777777666 4999999999988776542
Q ss_pred C-------CeEEEEEEcCCCC---EEEEEecCCCCCCeEEEEeCCCCceeeeeccccC-----------C----------
Q 001176 538 G-------NWCTMMAYSADGT---RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-----------R---------- 586 (1132)
Q Consensus 538 ~-------~~v~~~~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-----------~---------- 586 (1132)
. .+.....+..+|+ .++.+. .++.++++|..+|+.+........ .
T Consensus 292 ~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~----~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~ 367 (668)
T 1kv9_A 292 DSWDFTATQQITLAELNIDGKPRKVLMQAP----KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYE 367 (668)
T ss_dssp CCSCCCCCSCEEEEEEEETTEEEEEEEECC----TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCS
T ss_pred ccccccCCCCcEEEEeccCCcEEEEEEEEC----CCCEEEEEECCCCCEeccccccccccccccccccCCcccccccccc
Confidence 1 2222223334665 455553 488999999999998743321110 0
Q ss_pred --------------ceEEEEEeCCCCEEEEEE------------------------------------cCCeEEEEECCC
Q 001176 587 --------------SLGVVQFDTTRNRFLAAG------------------------------------DEFQIKFWDMDN 616 (1132)
Q Consensus 587 --------------~v~~~~~~~~~~~l~~~~------------------------------------~dg~i~iwd~~~ 616 (1132)
....++++|+...+++.. .+|.|..||+.+
T Consensus 368 ~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t 447 (668)
T 1kv9_A 368 KEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK 447 (668)
T ss_dssp SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT
T ss_pred CCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC
Confidence 011267888777766521 237899999999
Q ss_pred CeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeec
Q 001176 617 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1132)
++.+....... ......+...+.++++++.||.+++||..++ +.+..+
T Consensus 448 G~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG-~~l~~~ 495 (668)
T 1kv9_A 448 QKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKG-EALWQF 495 (668)
T ss_dssp TEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEE
T ss_pred CcEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcC-hhheEe
Confidence 99988776542 2344455567889999999999999999999 444444
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.58 E-value=3.1e-06 Score=85.97 Aligned_cols=200 Identities=13% Similarity=0.050 Sum_probs=128.0
Q ss_pred CeeEEEEeeCCCEEEEee-CC--eEEEEECCCCeEEEEeeCCCCCeE--EEEEeCCCCCeEEEEeCCCcEEEEEccccee
Q 001176 839 SAACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPPPAAT--FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 913 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s-dg--~i~vwd~~~~~~~~~~~~~~~~i~--~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 913 (1132)
....+.|+ ++.+..+.+ +| .|+++|+.+++.+..+.... ... .+++. ++++.+..-.++.+.+||..+.+.
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence 34678898 676555555 55 79999999999998887533 333 35554 345555555688999999999999
Q ss_pred eeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCe
Q 001176 914 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 993 (1132)
Q Consensus 914 ~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 993 (1132)
+.++.... .-..++ +|++.|+.+..++.|.++|..+.+......+.. +|+
T Consensus 120 ~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~------------------~g~--------- 169 (262)
T 3nol_A 120 VRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA------------------HGE--------- 169 (262)
T ss_dssp EEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEE------------------TTE---------
T ss_pred EEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc------------------CCc---------
Confidence 99887432 223444 577777766667889999998865322211100 000
Q ss_pred EEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccc-cCCCCCCcEE
Q 001176 994 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA-VSSNTAHPLV 1072 (1132)
Q Consensus 994 v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~ 1072 (1132)
. -..++.+.|. +|++.|..-.++.|.+.|.++|+.+..+......+... ......-.-.
T Consensus 170 ---------~----------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNG 229 (262)
T 3nol_A 170 ---------E----------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNG 229 (262)
T ss_dssp ---------E----------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEE
T ss_pred ---------c----------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEE
Confidence 0 1334556665 77766666578899999999999998887553222210 1122245568
Q ss_pred EEeCCCCCCeEEEEeCCCcE
Q 001176 1073 IAPHPSEPNQIALGMSDGAV 1092 (1132)
Q Consensus 1073 ~~~~p~~~~~l~s~~~Dg~i 1092 (1132)
++|+|+..+++++|-.=-.+
T Consensus 230 IA~dp~~~~lfVTGK~Wp~~ 249 (262)
T 3nol_A 230 IAWDKEHHRLFVTGKLWPKV 249 (262)
T ss_dssp EEEETTTTEEEEEETTCSEE
T ss_pred EEEcCCCCEEEEECCCCCce
Confidence 99999555555555443433
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.57 E-value=2.8e-06 Score=86.20 Aligned_cols=198 Identities=13% Similarity=0.045 Sum_probs=128.7
Q ss_pred CCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeE--EEEEeCCCCCeEEEEeCCCcEEEEEcccceee
Q 001176 838 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT--FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 914 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~--~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 914 (1132)
.....+.|+ ++.+..+.+ +|.|+++|+.+++.+..+ - ..... .+++. ++++.+..-.++.+.+||..+.+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence 334678887 344444444 789999999999988887 2 23333 35554 3455555667889999999999999
Q ss_pred eeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeE
Q 001176 915 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 994 (1132)
Q Consensus 915 ~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v 994 (1132)
.++..- ..-+.++ +|++.|+.+..++.|.++|..+.+......+.. ++
T Consensus 130 ~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~------------------~g----------- 177 (268)
T 3nok_A 130 RTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL------------------RG----------- 177 (268)
T ss_dssp EEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE------------------TT-----------
T ss_pred EEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC------------------CC-----------
Confidence 988743 3334555 578888877778899999998866432211110 00
Q ss_pred EEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccc--cCCCCCCcEE
Q 001176 995 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA--VSSNTAHPLV 1072 (1132)
Q Consensus 995 ~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~ 1072 (1132)
.. -..++.+.|. +|++.|..-.++.|.+.|.++|+.+..+......+... ......-.-.
T Consensus 178 -------~~----------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNG 239 (268)
T 3nok_A 178 -------QP----------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNG 239 (268)
T ss_dssp -------EE----------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEE
T ss_pred -------cc----------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEE
Confidence 00 2245566766 77666655568899999999999998887542221110 1122245668
Q ss_pred EEeCCCCCCeEEEEeCCC
Q 001176 1073 IAPHPSEPNQIALGMSDG 1090 (1132)
Q Consensus 1073 ~~~~p~~~~~l~s~~~Dg 1090 (1132)
++|+|...++++||-.=-
T Consensus 240 IA~dp~~~rlfVTGK~Wp 257 (268)
T 3nok_A 240 IAVEPGSGRIFMTGKLWP 257 (268)
T ss_dssp EEECTTTCCEEEEETTCS
T ss_pred EEEcCCCCEEEEeCCCCC
Confidence 999996667777765433
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.57 E-value=4.1e-05 Score=90.29 Aligned_cols=374 Identities=10% Similarity=0.007 Sum_probs=202.3
Q ss_pred EEEEEcC-CCcEEEEEC-CCCeEEEEecCCCC-C---------e-EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE
Q 001176 466 CIVTCGD-DKMIKVWDV-VAGRKQYTFEGHEA-P---------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 532 (1132)
Q Consensus 466 ~l~s~~~-dg~v~vwd~-~~~~~~~~~~~h~~-~---------v-~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~ 532 (1132)
.++.++. ++.|.-+|. .+|+.+.++..... . + ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 4666776 889999999 89999877653221 0 0 11222 22578888899999999999998887
Q ss_pred EecCCCC----eEEE-EEEcCCCCEEEEEecCC--CCCCeEEEEeCCCCceeeeeccccCC-------------------
Q 001176 533 DYDAPGN----WCTM-MAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRKR------------------- 586 (1132)
Q Consensus 533 ~~~~~~~----~v~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~------------------- 586 (1132)
....... .+.+ ... .++ .+++++... ..++.|+.+|..+|+.+.++......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6554321 1111 111 134 455543210 01678999999999988776542210
Q ss_pred ------------------ceEEEEEeCCCCEEEEEEcC----------------CeEEEEECCCCeeEEEEeCCCCC---
Q 001176 587 ------------------SLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNMNMLTTVDADGGL--- 629 (1132)
Q Consensus 587 ------------------~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 629 (1132)
....+++.++...++.+..+ +.|..+|..+++.+-.++...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00235677777777776532 36999999999998887643211
Q ss_pred -CCcce---EEEcCCCC---EEEEEeCCCcEEEEEcCCcceeeeeccccc--cccccCCCCCCCCCcccccccCCCcccc
Q 001176 630 -PASPR---LRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRA--MDKNRCPSEPISSKPLTINALGPASNVS 700 (1132)
Q Consensus 630 -~~v~~---~~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 700 (1132)
..+.. +....+|+ .++.++.+|.+.++|..+++. +....... .....+
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~-~w~~~~~~~~~w~~~~---------------------- 354 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL-IVAEKVDPAVNVFKKV---------------------- 354 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE-EEEEESSTTCCSEEEE----------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE-EeeecccCCccccccc----------------------
Confidence 01112 22224674 677888899999999999943 33322110 000000
Q ss_pred ccccCCCCCCCCCCCCcccCccCcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecC
Q 001176 701 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 780 (1132)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 780 (1132)
.. ..++.+.... .. ........+..|.......-..++++|+
T Consensus 355 ---d~-------------------------~~g~p~~~~~--------~~--~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 396 (571)
T 2ad6_A 355 ---DL-------------------------KTGTPVRDPE--------FA--TRMDHKGTNICPSAMGFHNQGVDSYDPE 396 (571)
T ss_dssp ---CT-------------------------TTCSEEECGG--------GC--CCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred ---cc-------------------------cCCceecccc--------cC--CCCCCCceEECCCCccccCCCCceECCC
Confidence 00 0000000000 00 0000001111221111111245788998
Q ss_pred CceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeE
Q 001176 781 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKV 860 (1132)
Q Consensus 781 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i 860 (1132)
...+.+...+....++.... ....+... -..-..+..+|.+. ....+|.|
T Consensus 397 ~g~~yv~~~~~~~~~~~~~~------------------~~~~g~~~----------~g~~~~~~~~~~~~--~~~~~g~l 446 (571)
T 2ad6_A 397 SRTLYAGLNHICMDWEPFML------------------PYRAGQFF----------VGATLAMYPGPNGP--TKKEMGQI 446 (571)
T ss_dssp TTEEEEEEECEEEEEEECCC------------------CCCTTSCC----------CCEEEEEEECTTST--TSCCCEEE
T ss_pred CCEEEEEchhcccccccccc------------------ccccCCcc----------ccccceeccCcccc--CCCCCCeE
Confidence 88888877765544443210 00001000 00011122233322 00125789
Q ss_pred EEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCC-eeEEEEcCCCCEEEE
Q 001176 861 SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALVS 938 (1132)
Q Consensus 861 ~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s 938 (1132)
..||..+++.+.++.... .+....+.. .+.++++++.||.|+.||..+|+.+.+++..... -.-+.+..+|+.++.
T Consensus 447 ~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 447 RAFDLTTGKAKWTKWEKF-AAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEECCCCCEEEEecCCC-CccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 999999999887776332 222233333 3456777999999999999999999887643321 122345567765443
No 260
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.56 E-value=5.5e-06 Score=84.18 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=128.3
Q ss_pred EEEEEEecCCCcEEEEEEcCCC--cEEEEECCCCeEEEEecCCCCCeE--EEEeeccCCccEEEEEecCCeEEEEEcCCC
Q 001176 453 VNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVY--SVCPHHKESIQFIFSTAIDGKIKAWLYDYL 528 (1132)
Q Consensus 453 v~~v~~s~d~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~--~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 528 (1132)
...+.|+ ++. ++.+.+.+| .|+++|+++++.+.++.-.. ... .+++ .++ .+.+..-.++.+.+||..+.
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~--~g~-~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISD--WKD-KIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEE--ETT-EEEEEESSSSEEEEEETTTC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEE--eCC-EEEEEEeeCCEEEEEECccC
Confidence 4788998 554 666666666 99999999999988876432 333 3444 332 45555567999999999999
Q ss_pred CceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC----CceEEEEEeCCCCEEEEEE
Q 001176 529 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAG 604 (1132)
Q Consensus 529 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~ 604 (1132)
+.+..+..... ...+++|++.|+... +.+.|.++|..+.+.+.++..... ..++.+.|. +|..++..-
T Consensus 118 ~~~~ti~~~~e---G~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w 189 (262)
T 3nol_A 118 RQVRSFNYDGE---GWGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW 189 (262)
T ss_dssp CEEEEEECSSC---CCCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEECCCC---ceEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence 88887765432 223446777777652 467799999999998888765321 134556776 565443344
Q ss_pred cCCeEEEEECCCCeeEEEEeCCCC----------CCCcceEEEcCCCCEEEEEeC
Q 001176 605 DEFQIKFWDMDNMNMLTTVDADGG----------LPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
.+..|.+.|..+++.+..+...+- ....+.+||+|+++.|++.+.
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 788999999999999999875321 124578999998888777765
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.53 E-value=1.5e-05 Score=87.22 Aligned_cols=236 Identities=13% Similarity=0.039 Sum_probs=146.8
Q ss_pred eeEEEEeeCCCEEEEee-CCeEEEEECCCCeEEEEeeC--------------------CCCCeEEEEEeCCCCCeEEEEe
Q 001176 840 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS--------------------PPPAATFLAFHPQDNNIIAIGM 898 (1132)
Q Consensus 840 v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~--------------------~~~~i~~l~~sp~~~~~lasg~ 898 (1132)
..+++++++|+++.++. ++.|..||..+++.. .+.. ....+..+++.+++++ |.++.
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 46788999998666665 789999998765443 2211 0135788999973454 44455
Q ss_pred CCCcEEEEEcccceeeeeec----c-ccCCeeEEEEcC-CCCEEEEEcC-----------------CCcEEEEECCCccc
Q 001176 899 EDSSVQIYNVRVDEVKTKLK----G-HQNRITGLAFSP-TLNALVSSGA-----------------DAQLCMWSIDKWEK 955 (1132)
Q Consensus 899 ~dg~v~iwd~~~~~~~~~l~----~-h~~~V~~l~~sp-dg~~l~s~~~-----------------D~~i~iwd~~~~~~ 955 (1132)
..+.|..+|..+++. ..+. + .......+++.+ +|+..++-.. ++.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 555588888776542 2221 1 123467899999 9988877543 36788888876542
Q ss_pred ccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE--eCCeEEEEeCCCCc---eeecCCCCCCCCCeEEEEEccCCCEEE
Q 001176 956 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLEC---SRSWSPKDALPAPISSAIYSCDGLLVY 1030 (1132)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~~---~~~~~~~~~h~~~i~~i~~s~dg~~la 1030 (1132)
.. ..... .....++++++|++|.++ ..+.|.+|++.+.. ...+... .+ ...+++.++|.+.+
T Consensus 178 ~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 178 TL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEE
T ss_pred EE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEE
Confidence 21 11111 234679999999977775 45789999985321 1222111 23 67899999999776
Q ss_pred EEec----------CCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCC
Q 001176 1031 AGFC----------DGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1100 (1132)
Q Consensus 1031 s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~ 1100 (1132)
+... .+.|..+|.. |+.+..+......+ -..+..+++. ++++.+++...+.|..+++...
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~-------~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA-------GEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT-------TSCCCEEEEE--TTEEEEECSSCSEEEEEEC---
T ss_pred EecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCc-------cccceEEEEe--CCEEEEeecCCCceEEEecccc
Confidence 6554 4678888875 77666554221100 1234455552 5667777777889999998654
Q ss_pred c
Q 001176 1101 E 1101 (1132)
Q Consensus 1101 ~ 1101 (1132)
.
T Consensus 315 ~ 315 (322)
T 2fp8_A 315 G 315 (322)
T ss_dssp -
T ss_pred c
Confidence 4
No 262
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.52 E-value=3.8e-05 Score=90.31 Aligned_cols=166 Identities=12% Similarity=0.145 Sum_probs=100.4
Q ss_pred EEEEeCCCCCeEEEEeCC----------------CcEEEEEcccceeeeeeccccC----------CeeEEEEc-CCC--
Q 001176 883 FLAFHPQDNNIIAIGMED----------------SSVQIYNVRVDEVKTKLKGHQN----------RITGLAFS-PTL-- 933 (1132)
Q Consensus 883 ~l~~sp~~~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~h~~----------~V~~l~~s-pdg-- 933 (1132)
.+++.+ ...++..++.+ +.|.-+|..+|+.+..++.... ++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 456777 55666666655 3799999999998877653221 121 2222 567
Q ss_pred -CEEEEEcCCCcEEEEECCCcccccceeeeC----------CCCC---------------------CCCCCCceeEEECC
Q 001176 934 -NALVSSGADAQLCMWSIDKWEKLKSRFIQA----------PAGR---------------------QSPLVGETKVQFHN 981 (1132)
Q Consensus 934 -~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~----------~~~~---------------------~~~~~~v~~~~~s~ 981 (1132)
+.++.++.+|.+.+.|..+++.+-...... ..+. ......-..++++|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 467778899999999999988654322111 0000 00001123567788
Q ss_pred CCcEEEEE----------------------------------------eCCeEEEEeC-CCCceeecCCCCCCCCCeEEE
Q 001176 982 DQTHLLVV----------------------------------------HESQISVYDS-KLECSRSWSPKDALPAPISSA 1020 (1132)
Q Consensus 982 dg~~l~~~----------------------------------------~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~i 1020 (1132)
+..++++. ..+.+..||+ +++.+-..... .++.+-
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~----~~~~~g 478 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----FAVWGG 478 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----SCCCSB
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC----CCccCc
Confidence 77766552 1246777777 45443332211 111111
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCcceecccCC
Q 001176 1021 IYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1054 (1132)
Q Consensus 1021 ~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~ 1054 (1132)
.+.-.+.+++.++.||.++.||.++|+.+-++..
T Consensus 479 ~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 479 TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp CEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 1233567888899999999999999999988753
No 263
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.51 E-value=0.0072 Score=74.53 Aligned_cols=528 Identities=10% Similarity=0.042 Sum_probs=270.9
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
..|.++....+|. |-.|+.+ -+..||..+...... .......|.++.. .+| .|..|
T Consensus 63 ~~i~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWig 118 (758)
T 3ott_A 63 TRIYCGVIIDNTY--LYMGTDN-GILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWLG 118 (758)
T ss_dssp SCEEEEEEETTTE--EEEEETT-EEEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEEE
T ss_pred ceEEEEEEcCCCc--EEEEeCC-CeEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEEE
Confidence 4688988888886 3344444 478899876532110 0012235777654 355 45556
Q ss_pred eCCCeEEEEEecCCCceeeeeee-e-cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE-ecCC----CCC
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEI-D-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGH----EAP 496 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l-~-~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~h----~~~ 496 (1132)
+.+ -+..+|..+++... .... . -....|.++....+|. |..|+.. -|..+|..+++.... .... ...
T Consensus 119 t~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (758)
T 3ott_A 119 ALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ---IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLF 192 (758)
T ss_dssp ETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC---EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCC
T ss_pred cCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC---EEEEeCC-CHhhCccCCCceEEecCCCccccccce
Confidence 666 48888887654221 1000 0 1134688888887776 3335544 477888777664321 1111 124
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce
Q 001176 497 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 576 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1132)
|.++.... ++..|..|+. +-+..+|..+.............|.++....+|.+.+.. . . -+.+++..+++.
T Consensus 193 i~~i~~d~--~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~----~-Gl~~~~~~~~~~ 263 (758)
T 3ott_A 193 VNSLLEDT--TRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D----N-GLYVYHNDTTPL 263 (758)
T ss_dssp EEEEEEET--TTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T----T-EEEEECCTTSCC
T ss_pred eEEEEEEC--CCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C----C-ceeEEecCCCcE
Confidence 77776543 3344445553 467778876543322111223468888888888766543 2 2 288888876554
Q ss_pred eeeec------cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe-----CCCCCCCcceEEEcCCCCEEE
Q 001176 577 KRTYS------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-----ADGGLPASPRLRFNKEGSLLA 645 (1132)
Q Consensus 577 ~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~ 645 (1132)
..... ......|.++....+|...+ |+..| +.++.... ....+. .......|.++.-..+|.+.+
T Consensus 264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi 339 (758)
T 3ott_A 264 QHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWF 339 (758)
T ss_dssp EEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE
T ss_pred EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEE
Confidence 32111 11223588888887776544 54556 54443322 111111 011123577777777776544
Q ss_pred EEeCCCcEEEEEcCCcce-eeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCc
Q 001176 646 VTTSDNGIKILANSDGVR-LLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 724 (1132)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1132)
|+.+| +..++..++.. .+..+.
T Consensus 340 -Gt~~G-l~~~~~~~~~~~~~~~~~------------------------------------------------------- 362 (758)
T 3ott_A 340 -GGANG-LIRFTDPAGERHDAIWYR------------------------------------------------------- 362 (758)
T ss_dssp -EETTE-EEEESCTTSSCCCCEEEC-------------------------------------------------------
T ss_pred -eeCCc-ceeecccccccceeEEec-------------------------------------------------------
Confidence 55544 55555443210 000000
Q ss_pred CCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCC
Q 001176 725 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 804 (1132)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~ 804 (1132)
.... . .......|.++.-..+|..-+. +. +-+..|+.....+.
T Consensus 363 ------------------------~~~~--~---------~~l~~~~v~~i~~d~~g~lWig-t~-~GL~~~~~~~~~~~ 405 (758)
T 3ott_A 363 ------------------------MGDK--T---------YPLSHNRIRHIYEDKEQQLWIA-TD-GSINRYDYATRQFI 405 (758)
T ss_dssp ------------------------TTCS--S---------SCCSCSCEEEEEECTTSCEEEE-ET-TEEEEEETTTTEEE
T ss_pred ------------------------cCCc--C---------CCCCCCceEEEEECCCCCEEEE-eC-CcHhhcCcCCCcEE
Confidence 0000 0 0001234677777777764443 33 45666654321110
Q ss_pred CCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCC-----eEE---EEee-
Q 001176 805 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTF-----KVM---TMFM- 875 (1132)
Q Consensus 805 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~-----~~~---~~~~- 875 (1132)
.+... ....... ...|.++...++|.+.+....+-+.++|..+. ... ..+.
T Consensus 406 ------------~~~~~-------~~~~~~~-~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 465 (758)
T 3ott_A 406 ------------HYNIV-------DNTGTYN-TNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSV 465 (758)
T ss_dssp ------------EEEEE-------CCC--CB-SSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECG
T ss_pred ------------EeecC-------CCcCCCC-CceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccc
Confidence 00000 0000001 34688888877777666444667888885431 111 1111
Q ss_pred --C-CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecc---ccCCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001176 876 --S-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG---HQNRITGLAFSPTLNALVSSGADAQLCMWS 949 (1132)
Q Consensus 876 --~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~s~~~D~~i~iwd 949 (1132)
+ ....|.++...+ ++.+.+.++..+-|..+|..+++....... ....+.++....+|.+.+.. ..| +..++
T Consensus 466 ~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~ 542 (758)
T 3ott_A 466 HNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRIN 542 (758)
T ss_dssp GGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEEC
T ss_pred ccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEe
Confidence 1 223588999888 777765333345588889877764432211 13457888888888877654 444 88888
Q ss_pred CCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEc-cCCCE
Q 001176 950 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYS-CDGLL 1028 (1132)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s-~dg~~ 1028 (1132)
..+...... . ..+- +...+.++... +|.+.+.+ +..+..+|........+... ...+....+. +||.
T Consensus 543 ~~~~~~~~~---~-~~gl--~~~~i~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~G~- 610 (758)
T 3ott_A 543 PKDESQQSI---S-FGSF--SNNEILSMTCV-KNSIWVST-TNGLWIIDRKTMDARQQNMT---NKRFTSLLFDPKEDC- 610 (758)
T ss_dssp C--CCCCBC---C-CCC-----CCEEEEEEE-TTEEEEEE-SSCEEEEETTTCCEEEC--C---CCCCSEEEEETTTTE-
T ss_pred cCCCceEEe---c-ccCC--CccceEEEEEC-CCCEEEEC-CCCeEEEcCCCceeEEecCC---CCceeeeEEECCCCc-
Confidence 776542211 1 1111 11346677653 66544444 55688888854444433211 2233444444 4665
Q ss_pred EEEEecCCcEEEEeCC
Q 001176 1029 VYAGFCDGAIGVFDAE 1044 (1132)
Q Consensus 1029 las~~~dg~i~vwd~~ 1044 (1132)
|..|+.+|.+ .++.+
T Consensus 611 l~fG~~~Gl~-~f~p~ 625 (758)
T 3ott_A 611 VYLGGADGFG-ISHSN 625 (758)
T ss_dssp EEEECBSEEE-EEEC-
T ss_pred EEEecCCceE-EEChh
Confidence 5667777754 44543
No 264
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.51 E-value=0.0074 Score=74.43 Aligned_cols=537 Identities=12% Similarity=0.092 Sum_probs=283.3
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
...|.|+.-..+|... .|+.+| +..||-..-+ .+... -......|.++.-..+|. |-.
T Consensus 21 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~~~--------~~~~~----------~~~~~~~i~~i~~d~~g~-lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW--IGSNKG-LFSYDGYSTQ--------QHFTY----------GENNNTRIYCGVIIDNTY-LYM 78 (758)
T ss_dssp CCCEEEEEECTTSCEE--EEESSC-EEEECSSCEE--------ECSCT----------TSTTSSCEEEEEEETTTE-EEE
T ss_pred cceEEEEEECCCCCEE--EEECCC-ccccCCCceE--------EEEcc----------CCCCCceEEEEEEcCCCc-EEE
Confidence 4579999999999733 344555 5566632111 00000 001235688888777764 555
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec----C-CCCCe
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE----G-HEAPV 497 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~----~-h~~~v 497 (1132)
|+.+| +..||..+.. ... ........|.++.. .+|. |..++.+ -|..+|..+++.. .+. + ....|
T Consensus 79 gT~~G-l~~yd~~~~~-f~~--~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADR-YEQ--PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTE-ECC--CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCE-EEC--cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence 66666 7899987643 211 11112335777654 4554 4445555 6888998776543 331 1 23457
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE-ecC----CCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC
Q 001176 498 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDA----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 572 (1132)
.++.... ++.+. .++.+ -+..++..+...... ... ....|.++....++..|..++. +-+..+|..
T Consensus 149 ~~i~~d~--~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIRTK--DNQIY-VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS 219 (758)
T ss_dssp EEEEECT--TCCEE-EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred EEEEEcC--CCCEE-EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence 7776543 33444 45544 567777665432211 111 1224888888877775555542 138889987
Q ss_pred CCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC-----CCCCcceEEEcCCCCEEEEE
Q 001176 573 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-----GLPASPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~ 647 (1132)
+++... +.......|.++....+|...+ |+. +-+.+++..+++......... ....|.++....+|.+ -.|
T Consensus 220 ~~~~~~-~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiG 295 (758)
T 3ott_A 220 TGQIKQ-TEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLG 295 (758)
T ss_dssp TTEEEE-EEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE-EEE
T ss_pred CCeEEe-ccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEE
Confidence 765432 2211222578888887776555 444 458888887665432221110 1124677777777764 445
Q ss_pred eCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCccCcCCc
Q 001176 648 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 727 (1132)
Q Consensus 648 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1132)
+..| +.++... . .+..+....
T Consensus 296 T~~G-l~~~~~~-~--~~~~~~~~~------------------------------------------------------- 316 (758)
T 3ott_A 296 TDYG-ISLSRYN-S--ALQFIPISQ------------------------------------------------------- 316 (758)
T ss_dssp ESSS-EEEECCC-C---CEEEEHHH-------------------------------------------------------
T ss_pred eCCc-ccccccC-C--ceeEEeccc-------------------------------------------------------
Confidence 5555 4433221 1 111000000
Q ss_pred ccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecccceeEEEeeccccCCCCC
Q 001176 728 SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSG 807 (1132)
Q Consensus 728 ~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 807 (1132)
. ........|.++....+|..-+. +.+| +..++.......
T Consensus 317 ---------------------~--------------~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~--- 356 (758)
T 3ott_A 317 ---------------------I--------------TGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERH--- 356 (758)
T ss_dssp ---------------------H--------------SCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCC---
T ss_pred ---------------------C--------------CCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccc---
Confidence 0 00001234667777777764444 3444 333432210000
Q ss_pred ccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEee-C-----CCCCe
Q 001176 808 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM-S-----PPPAA 881 (1132)
Q Consensus 808 ~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~-~-----~~~~i 881 (1132)
....+...... ..+ . ...|.++.-.++|.+.+.. ++.+..||..+++...... . ....|
T Consensus 357 ------~~~~~~~~~~~---~~l----~-~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v 421 (758)
T 3ott_A 357 ------DAIWYRMGDKT---YPL----S-HNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWT 421 (758)
T ss_dssp ------CCEEECTTCSS---SCC----S-CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSE
T ss_pred ------eeEEeccCCcC---CCC----C-CCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceE
Confidence 00000000000 000 1 3468888888888766544 6689999988776533221 1 12457
Q ss_pred EEEEEeCCCCCeEEEEeCCCcEEEEEcccc------eee--eeec---c-ccCCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001176 882 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVD------EVK--TKLK---G-HQNRITGLAFSPTLNALVSSGADAQLCMWS 949 (1132)
Q Consensus 882 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~------~~~--~~l~---~-h~~~V~~l~~spdg~~l~s~~~D~~i~iwd 949 (1132)
.++...+ ++.+. .|+..+-|.++|..+. ... ..+. + ....|.++...++|.+.+.++..+-|..+|
T Consensus 422 ~~i~~d~-~g~lW-igT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d 499 (758)
T 3ott_A 422 YYIFEDT-AGQLW-ISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKIN 499 (758)
T ss_dssp EEEEECT-TSEEE-EEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEE
T ss_pred EEEEEcC-CCCEE-EEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEe
Confidence 8888776 55544 4777667888986531 111 1111 1 123588999999998877444445588899
Q ss_pred CCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEE
Q 001176 950 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLV 1029 (1132)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~l 1029 (1132)
..+++... .. ..+ ......+.++....+|.+.+.+. +.+..|+........+....--...|.++... +|. |
T Consensus 500 ~~~~~~~~---~~-~~~-~~~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-l 571 (758)
T 3ott_A 500 PRTREVTK---LF-ADE-LTGEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-I 571 (758)
T ss_dssp TTTTEEEE---EC-TTT-SCGGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-E
T ss_pred CCCCceEE---ec-CCC-cCCCcccceEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCC-E
Confidence 87754221 11 011 00013467788888888776654 56888888444333332110013568888763 554 5
Q ss_pred EEEecCCcEEEEeCCCccee
Q 001176 1030 YAGFCDGAIGVFDAETLRFR 1049 (1132)
Q Consensus 1030 as~~~dg~i~vwd~~~~~~~ 1049 (1132)
..++..| |..+|..+.+..
T Consensus 572 Wi~t~~G-l~~~~~~~~~~~ 590 (758)
T 3ott_A 572 WVSTTNG-LWIIDRKTMDAR 590 (758)
T ss_dssp EEEESSC-EEEEETTTCCEE
T ss_pred EEECCCC-eEEEcCCCceeE
Confidence 5555555 888898876643
No 265
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.50 E-value=0.00019 Score=84.63 Aligned_cols=204 Identities=10% Similarity=-0.025 Sum_probs=121.6
Q ss_pred CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCC-------EEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEE
Q 001176 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG-------VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 489 (1132)
Q Consensus 417 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~-------v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 489 (1132)
+..+++++.++.|.-+|..+|+.+-... ....... -..+++ .+. .++.++.|+.|.-+|..+|+.+.+
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYN-HRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEE-CCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEc-CCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEee
Confidence 3345455554448888998888654321 1111000 012233 234 577788899999999999999876
Q ss_pred ecCCCC----CeE-EEEeecc-CCcc-EEEEEe------cCCeEEEEEcCCCCceEEecCCCCeE---------------
Q 001176 490 FEGHEA----PVY-SVCPHHK-ESIQ-FIFSTA------IDGKIKAWLYDYLGSRVDYDAPGNWC--------------- 541 (1132)
Q Consensus 490 ~~~h~~----~v~-~i~~~~~-~~~~-~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~~~v--------------- 541 (1132)
...... .+. +..+... .++. .+++++ .++.|.-+|..+++.+.........+
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 653221 111 1111111 1222 566655 37899999999988776543321000
Q ss_pred --------------------------EEEEEcCCCCEEEEEecCC----------CC----------CCeEEEEeCCCCc
Q 001176 542 --------------------------TMMAYSADGTRLFSCGTSK----------EG----------ESHLVEWNESEGA 575 (1132)
Q Consensus 542 --------------------------~~~~~s~~~~~l~~~~~~~----------~~----------~~~i~~wd~~~~~ 575 (1132)
..+++.|+...++.+..+. .+ .+.|..+|..+|+
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 1345667777777665310 11 2689999999999
Q ss_pred eeeeeccc-cC--------CceEEEEEe-CCCC---EEEEEEcCCeEEEEECCCCeeEEEEeCC
Q 001176 576 IKRTYSGF-RK--------RSLGVVQFD-TTRN---RFLAAGDEFQIKFWDMDNMNMLTTVDAD 626 (1132)
Q Consensus 576 ~~~~~~~~-~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1132)
.+..++.. ++ .++. +... .+|+ .++.++.+|.++++|..+|+.+......
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred EEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccc
Confidence 99887542 11 1111 2222 4664 6777889999999999999998776543
No 266
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.50 E-value=1.2e-05 Score=98.73 Aligned_cols=248 Identities=13% Similarity=0.070 Sum_probs=134.5
Q ss_pred CeeEEEEc-cCCCeEEEEEcCCC----cEEEEecCCC-ccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCC
Q 001176 345 NVMSMDFH-PQQQTILLVGTNVG----DISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 418 (1132)
Q Consensus 345 ~V~~~~~s-pdg~~lla~g~~dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 418 (1132)
.+...+|| |||++++++.+.+| +|+++|+.++ +.+.. . + ......++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~---~~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------V---SGTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------E---EEECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------c---cCceeeEEEecCCC
Confidence 67889999 99996555554443 4999999988 63221 0 1 11234688999999
Q ss_pred eEEEEeCC-----CeEEEEEecCCCceeeeeeee-cccCCEEEEEEecCCCcEEEEEEc-CCCcEEEEECCCCe-EE--E
Q 001176 419 MLGVAFSK-----HIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGR-KQ--Y 488 (1132)
Q Consensus 419 ~las~~~d-----g~i~iwd~~~~~~~~~~~~l~-~h~~~v~~v~~s~d~~~~~l~s~~-~dg~v~vwd~~~~~-~~--~ 488 (1132)
.|+....+ ..|.++++.++..... ..+. .+......+.|+|||+.+.+.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 88877665 2577888877542211 1122 223456788999999953332222 24478889988752 12 3
Q ss_pred Eec-CCCCCeEEEEeeccCCccEEEEEecC----CeEEEEEcCCCCceEE-ecCCCC--eEEEEEEcCCCCEEEEEecCC
Q 001176 489 TFE-GHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVD-YDAPGN--WCTMMAYSADGTRLFSCGTSK 560 (1132)
Q Consensus 489 ~~~-~h~~~v~~i~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~~~ 560 (1132)
.+. .......++.|+. ++.+++....+ ..|..+|+.+...... +..+.. .+..+.+. ++.|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEE-E
T ss_pred EeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEE-e
Confidence 343 3445556655432 22444444443 3566677664222122 222322 44555554 556554442 2
Q ss_pred CCCCeEEEEeC-------CCCceeeeeccccCCceEEEEE----eCCCCEE-EEEEc---CCeEEEEECCCCee
Q 001176 561 EGESHLVEWNE-------SEGAIKRTYSGFRKRSLGVVQF----DTTRNRF-LAAGD---EFQIKFWDMDNMNM 619 (1132)
Q Consensus 561 ~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l-~~~~~---dg~i~iwd~~~~~~ 619 (1132)
++...|+++|+ .+++....+.......+..+.+ ++++..+ ++.+. -..++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34456788886 3444133332211111222322 3455444 44332 24678888877654
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.49 E-value=7.7e-05 Score=80.69 Aligned_cols=241 Identities=9% Similarity=-0.003 Sum_probs=146.0
Q ss_pred CCcccceEEeecCCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeE
Q 001176 330 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 409 (1132)
Q Consensus 330 d~~~~~~~~~l~h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 409 (1132)
+..+.+.+..+.......+++|+|+|+ ++++-..++.|..||..++. .. .+. ....+.
T Consensus 18 ~~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~-----~~~---------------~~~~p~ 75 (306)
T 2p4o_A 18 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QI-----HAT---------------VEGKVS 75 (306)
T ss_dssp CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EE-----EEE---------------CSSEEE
T ss_pred cCCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EE-----EEe---------------CCCCce
Confidence 334566677776557889999999998 77777678999999877532 11 111 123588
Q ss_pred EEEEcCCCCeEEEEeCC-C-eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE-
Q 001176 410 RCVWGPDGLMLGVAFSK-H-IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK- 486 (1132)
Q Consensus 410 ~v~~spdg~~las~~~d-g-~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~- 486 (1132)
.++++++|+++++.... + .|..++..+++.. ....+. .......++..+++. .+++-..++.|.++|..+++.
T Consensus 76 gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 76 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEe
Confidence 99999999976665433 2 4666777776532 222221 122334555555554 556665688999999776532
Q ss_pred EEEec---------CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCeEEEEEEcCCCCEEE
Q 001176 487 QYTFE---------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 487 ~~~~~---------~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
+.... +.-...+.+ ++++ +.++++-...+.|..++++.... ...+. .......+++.++|++.+
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~v 227 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYG 227 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEE
T ss_pred EEEECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEE
Confidence 21111 111234455 4443 24556666788999999875211 11111 112345688999998765
Q ss_pred EEecCCCCCCeEEEEeCCCCceee--eeccccCCceEEEEEe---CCCCEEEEEEcC
Q 001176 555 SCGTSKEGESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFD---TTRNRFLAAGDE 606 (1132)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~---~~~~~l~~~~~d 606 (1132)
+.. +.+.|.++|.. ++... .+.... ....+++|. |+++.|++++..
T Consensus 228 a~~----~~~~V~~~~~~-G~~~~~~~~~~~~-~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 228 ATH----IYNSVVRIAPD-RSTTIIAQAEQGV-IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ECB----TTCCEEEECTT-CCEEEEECGGGTC-TTEEEEEECCSTTTTTEEEEEECT
T ss_pred EeC----CCCeEEEECCC-CCEEEEeeccccc-CCceEEEEecccCCCCEEEEECCC
Confidence 543 35679999975 65532 233222 257889998 888887776643
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.48 E-value=4.9e-05 Score=82.25 Aligned_cols=228 Identities=14% Similarity=0.080 Sum_probs=138.9
Q ss_pred cCeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc-CCC-cEEEEECCC
Q 001176 406 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK-MIKVWDVVA 483 (1132)
Q Consensus 406 ~~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~dg-~v~vwd~~~ 483 (1132)
.....++|+++|+++++...++.|..||.++. ... . + ........+++.++|+ ++++.. .++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~-~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI-H--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE-E--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE-E--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 45778999999997777768899999987753 221 1 1 1234688999999998 455443 333 477778778
Q ss_pred CeEEEEecC-CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEE-e-------c--CCCCeEEEEEEcCCCCE
Q 001176 484 GRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-Y-------D--APGNWCTMMAYSADGTR 552 (1132)
Q Consensus 484 ~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~-------~--~~~~~v~~~~~s~~~~~ 552 (1132)
++....... .......++..+ ++..+++...++.|..+|......... . . ........+ ++++++
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 775432221 122334454432 224455555688888888765321111 0 0 111234455 788888
Q ss_pred EEEEecCCCCCCeEEEEeCCC-Cce--eeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCC
Q 001176 553 LFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 629 (1132)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1132)
|+.+.. ..+.|..+++.. ++. ...+... .....++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 877653 467899999874 332 1111111 134558899999877766677899999975 5543321222222
Q ss_pred CCcceEEEc---CCCCEEEEEeCC
Q 001176 630 PASPRLRFN---KEGSLLAVTTSD 650 (1132)
Q Consensus 630 ~~v~~~~~s---~~~~~l~~~~~d 650 (1132)
....+++|. ++++.|++++..
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEecccCCCCEEEEECCC
Confidence 357899998 888888777654
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.47 E-value=3.7e-05 Score=83.97 Aligned_cols=249 Identities=9% Similarity=0.033 Sum_probs=146.1
Q ss_pred ceEEEEEecCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCC---------cCcccccCCCCCCCCCCee
Q 001176 771 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS---------GTLMTNDINESKPTEESAA 841 (1132)
Q Consensus 771 ~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~h~~~~v~ 841 (1132)
...++++.++|..+.+...++.|..|+....... .|.... +........ . ...+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~---~-~~~p~ 83 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV------------DFAYASPYWNKAFCENSTDAEKRP---L-CGRTY 83 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE------------EEEESCTTCCHHHHTTCCCGGGHH---H-HCCEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE------------EEecccccccccccccccchhccc---c-CCCCc
Confidence 3567889999887888878888888865321110 000000 000000000 0 13468
Q ss_pred EEEEee-CCCEEEEeeCCeEEEEECCCCeEEEEeeC-----CCCCeEEEEEeCCCCCeEEEEeC----------------
Q 001176 842 CIALSK-NDSYVMSASGGKVSLFNMMTFKVMTMFMS-----PPPAATFLAFHPQDNNIIAIGME---------------- 899 (1132)
Q Consensus 842 ~~~~s~-dg~~la~~sdg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~sp~~~~~lasg~~---------------- 899 (1132)
.+++++ +|+++++...+.|..+|..+++. ..+.. .......+++.+.+|++.++-..
T Consensus 84 gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 84 DISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp EEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTC
T ss_pred eEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccC
Confidence 899998 56544443456688898776542 22221 11346789998833555554322
Q ss_pred -CCcEEEEEcccceeeeeeccccCCeeEEEEcCCCCEEE-EEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeE
Q 001176 900 -DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 977 (1132)
Q Consensus 900 -dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~-s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 977 (1132)
+|.|..||..+++...... .......|+|+|+|++|. +-...+.|..+++..........+.... . ...+
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~------g-P~gi 234 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP------N-PGNI 234 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS------S-EEEE
T ss_pred CCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC------C-CCCe
Confidence 3678889887665433222 223456799999998554 4466788999998853211111111111 2 5778
Q ss_pred EECCCCcEEEEE-e----------CCeEEEEeCCCCceeecCCCCCC-CCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001176 978 QFHNDQTHLLVV-H----------ESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 978 ~~s~dg~~l~~~-~----------d~~v~vwd~~~~~~~~~~~~~~h-~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~ 1045 (1132)
++.++|++.++. . .+.|..+|.+++.+..+....+. ...++++++ .++++.++....+.|.++++..
T Consensus 235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 999999877764 3 36688888877766665433221 245677776 4666666666788899998864
No 270
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.46 E-value=1.8e-05 Score=80.39 Aligned_cols=181 Identities=8% Similarity=0.026 Sum_probs=128.0
Q ss_pred CEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeE--EEEeeccCCccEEEEEecCCeEEEEEcCCCC
Q 001176 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY--SVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 529 (1132)
Q Consensus 452 ~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~--~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~ 529 (1132)
....+.|+. +. ++++.+.+|.|+++|+++++.+.++ -..... .+++ .++ .+.+..-.++.+.+||..+.+
T Consensus 56 ftqGL~~~~-~~--Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~--~g~-~Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 56 FTQGLVFHQ-GH--FFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS--DGE-RLYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CEEEEEEET-TE--EEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE--CSS-CEEEEESSSCEEEEEETTTTE
T ss_pred ccceEEEEC-CE--EEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE--eCC-EEEEEEccCCEEEEEECCcCc
Confidence 347888873 33 7788888999999999999998877 223333 3544 333 556666679999999999988
Q ss_pred ceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCC----ceEEEEEeCCCCEEEEEE-
Q 001176 530 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAG- 604 (1132)
Q Consensus 530 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~- 604 (1132)
.+..+...... .. +++|++.|+.+. +.+.|+++|..+.+.+.++.....+ .++.+.|. +|. +++..
T Consensus 128 ~~~ti~~~~eG-wG--Lt~Dg~~L~vSd----Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw 198 (268)
T 3nok_A 128 RERTTRYSGEG-WG--LCYWNGKLVRSD----GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW 198 (268)
T ss_dssp EEEEEECSSCC-CC--EEEETTEEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET
T ss_pred EEEEEeCCCce-eE--EecCCCEEEEEC----CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC
Confidence 88877654332 23 336788887763 4778999999999988887653321 34556776 664 55544
Q ss_pred cCCeEEEEECCCCeeEEEEeCC-----------CCCCCcceEEEcCCCCEEEEEeC
Q 001176 605 DEFQIKFWDMDNMNMLTTVDAD-----------GGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
.+..|.+.|..+++.+..+... ......+.||++|+++.|++.+.
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 6889999999999999888743 11234588999997766665553
No 271
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.45 E-value=1.9e-05 Score=79.60 Aligned_cols=204 Identities=13% Similarity=0.090 Sum_probs=130.7
Q ss_pred CCCeeEEEEeeCCCEEEEee-C--CeEEEEECCCCeEEEEeeCCCCC-eEEEEEeCCCCCeEEEEeCCCcEEEEEcccce
Q 001176 837 EESAACIALSKNDSYVMSAS-G--GKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 912 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-d--g~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 912 (1132)
......+.|+. +.+..+.+ + ..|+.+|+.+++.+....-.... --.+++. ++++.+..-.++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34556888986 44444444 3 48999999999999888644332 1345554 34566666678999999999999
Q ss_pred eeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCC
Q 001176 913 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 992 (1132)
Q Consensus 913 ~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 992 (1132)
.+.++..-. .-+.++ +|++.|+.+..++.|.++|..+.+......+.. ++
T Consensus 97 ~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~------------------~g--------- 146 (243)
T 3mbr_X 97 PRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA------------------GG--------- 146 (243)
T ss_dssp EEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE------------------TT---------
T ss_pred EEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc------------------CC---------
Confidence 999887433 234554 567766666678889999998865332211110 00
Q ss_pred eEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCcccccccc--CCCCCCc
Q 001176 993 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV--SSNTAHP 1070 (1132)
Q Consensus 993 ~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~v 1070 (1132)
.. -..++.+.+. +|+..|..-.+..|.+.|..+|+.+..+......+.... .....-.
T Consensus 147 ---------~~----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vl 206 (243)
T 3mbr_X 147 ---------RP----------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVL 206 (243)
T ss_dssp ---------EE----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCE
T ss_pred ---------cc----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCce
Confidence 00 1234556654 677666555688999999999999988875533222110 1122456
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEE
Q 001176 1071 LVIAPHPSEPNQIALGMSDGAVH 1093 (1132)
Q Consensus 1071 ~~~~~~p~~~~~l~s~~~Dg~i~ 1093 (1132)
-.++|+|..+++++||-.=-.+.
T Consensus 207 NGIA~d~~~~~lfVTGK~wp~~~ 229 (243)
T 3mbr_X 207 NGIAFDAEHDRLFVTGKRWPMLY 229 (243)
T ss_dssp EEEEEETTTTEEEEEETTCSEEE
T ss_pred EEEEEcCCCCEEEEECCCCCcEE
Confidence 68999996666666665444443
No 272
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.44 E-value=3.3e-05 Score=93.48 Aligned_cols=279 Identities=9% Similarity=0.037 Sum_probs=156.1
Q ss_pred eEEEEcc-CCCeEEEEEcCCC-----------cEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 347 MSMDFHP-QQQTILLVGTNVG-----------DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 347 ~~~~~sp-dg~~lla~g~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
.++++.| +|+ +++.|+.++ .+.+||..+++...... +...+.....++++.
T Consensus 189 ~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~ 251 (656)
T 1k3i_A 189 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMD 251 (656)
T ss_dssp SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEEC
T ss_pred eeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCC
Confidence 3667777 776 777776432 58889988876432100 011233334467888
Q ss_pred CCCCeEEEEeC-CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEc-CC-----CcEEEEECCCCeEE
Q 001176 415 PDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DD-----KMIKVWDVVAGRKQ 487 (1132)
Q Consensus 415 pdg~~las~~~-dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d-----g~v~vwd~~~~~~~ 487 (1132)
.+|+++++|+. +..+.+||..+++-.. ...+.... .-.+++..++++ +++.|+ .+ ..+.+||..+++..
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCCEEEeCCCCCCceEEecCcCCceeE-CCCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 99999999984 4589999988753221 11221111 123455667888 778887 44 57999999887754
Q ss_pred EEecCCC-CCe----EEEEeeccCCccEEEEEecCC---------eEEEEEcCCCCceEEecCC---------CCeEEEE
Q 001176 488 YTFEGHE-APV----YSVCPHHKESIQFIFSTAIDG---------KIKAWLYDYLGSRVDYDAP---------GNWCTMM 544 (1132)
Q Consensus 488 ~~~~~h~-~~v----~~i~~~~~~~~~~l~s~s~dg---------~i~~wd~~~~~~~~~~~~~---------~~~v~~~ 544 (1132)
.. .... .+. ....+ ..++..++.++.+| .+..||..+.......... ...-.++
T Consensus 328 ~~-~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 328 SL-PNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EE-TTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred eC-CCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 32 1000 000 00001 11224445555443 5677888766533222111 1122344
Q ss_pred EEcC-CCCEEEEEecCCC----CCC---eEEEEeCCCCceeeee--ccccCCceEEEEEeCCCCEEEEEEcC--------
Q 001176 545 AYSA-DGTRLFSCGTSKE----GES---HLVEWNESEGAIKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDE-------- 606 (1132)
Q Consensus 545 ~~s~-~~~~l~~~~~~~~----~~~---~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------- 606 (1132)
.+.. +++.++.++.+.. ... .+.+||..+....... .......-.+++..|+++.++.||.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 4433 6677777664211 012 5888888876654432 11222123445667899999998754
Q ss_pred ---CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeC
Q 001176 607 ---FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 607 ---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
..+.+||..+.+....-..........+..+.++|++++.|+.
T Consensus 485 ~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 5689999988765432222111112234556789999999885
No 273
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.40 E-value=7.4e-05 Score=75.31 Aligned_cols=185 Identities=12% Similarity=0.089 Sum_probs=127.5
Q ss_pred CCEEEEEEecCCCcEEEEEEcCCC--cEEEEECCCCeEEEEecCCCC-CeEEEEeeccCCccEEEEEecCCeEEEEEcCC
Q 001176 451 GGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEA-PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 527 (1132)
Q Consensus 451 ~~v~~v~~s~d~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~h~~-~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~ 527 (1132)
.-...+.|++ +. ++.+.+.+| .|+.+|+.+|+.+.++.-... .-..+++. ++ .+.+..-.++.+.+||..+
T Consensus 21 ~ftqGL~~~~-~~--LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~-~ly~ltw~~~~v~v~D~~t 94 (243)
T 3mbr_X 21 AFTEGLFYLR-GH--LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RD-RLIQLTWRNHEGFVYDLAT 94 (243)
T ss_dssp CCEEEEEEET-TE--EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TT-EEEEEESSSSEEEEEETTT
T ss_pred cccccEEEEC-CE--EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CC-EEEEEEeeCCEEEEEECCc
Confidence 3467899986 44 566666654 999999999999887753322 12334443 32 5566667799999999999
Q ss_pred CCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccC----CceEEEEEeCCCCEEEEE
Q 001176 528 LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAA 603 (1132)
Q Consensus 528 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~ 603 (1132)
.+.+..+...... ..+ .++++.|+.+ ++.+.|.++|..+.+.+.++..... ..++.+.+. +|..++..
T Consensus 95 l~~~~ti~~~~~G-wgl--t~dg~~L~vS----dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 95 LTPRARFRYPGEG-WAL--TSDDSHLYMS----DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp TEEEEEEECSSCC-CEE--EECSSCEEEE----CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred CcEEEEEeCCCCc-eEE--eeCCCEEEEE----CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 8888877654432 233 3567777665 2477899999999998888765322 134556665 55444334
Q ss_pred EcCCeEEEEECCCCeeEEEEeCCC-----------CCCCcceEEEcCCCCEEEEEeC
Q 001176 604 GDEFQIKFWDMDNMNMLTTVDADG-----------GLPASPRLRFNKEGSLLAVTTS 649 (1132)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~ 649 (1132)
-.+..|.+.|..+++.+..+...+ .....+.++++|+++.|++.+.
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 367899999999999999887431 1124578999998777776654
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.35 E-value=0.00095 Score=73.27 Aligned_cols=248 Identities=11% Similarity=-0.004 Sum_probs=151.2
Q ss_pred CCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE
Q 001176 344 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 423 (1132)
Q Consensus 344 ~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 423 (1132)
+..+|.+..++.. ++++- .+.|+..++....... ++. ....+..++|++.+..|..+
T Consensus 34 d~~~C~~~~~~~~-ll~~~--~~~I~~i~~~g~~~~~-------------------~~~-~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 34 DRRSCKALGPEPV-LLFAN--RIDIRQVLPHRSEYTL-------------------LLN-NLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp TSSCEEESSSCCE-EEEEC--BSCEEEECTTSCCEEE-------------------EEC-SCSCEEEEEEETTTTEEEEE
T ss_pred CCCcccccccCce-eEeec--ccceEEEeCCCCeeEE-------------------eec-CCCceEEEEEeccccEEEEE
Confidence 4566777777543 44432 4567777776543211 011 23357899999866655544
Q ss_pred -eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEe
Q 001176 424 -FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 502 (1132)
Q Consensus 424 -~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~ 502 (1132)
...+.|..++.+++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++
T Consensus 91 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred eccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 457889999988754322 12222234578999986664 4566666789999997654433333334456789999
Q ss_pred eccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 503 HHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 503 ~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
+|.. +.++++-... +.|..++++.................++++|++..|+.+-. +.+.|..+|+........+.
T Consensus 167 dp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 167 HPME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp ETTT-TEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred ecCc-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence 8754 3555555555 78888888754444333334456789999998888777643 46789999987543322232
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe
Q 001176 582 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1132)
.... ....+++. .+..+++-...+.|..++..+++....+.
T Consensus 243 ~~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 243 QGLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCC-CceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 45667773 33333444466778888766666555554
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.33 E-value=0.0012 Score=71.33 Aligned_cols=232 Identities=9% Similarity=-0.000 Sum_probs=144.4
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC---CeE-EEEecCCC
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRK-QYTFEGHE 494 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~---~~~-~~~~~~h~ 494 (1132)
+|+.+.. ..|+..|+.+..... .+ ........++|++++.. ++++-...+.|..+++.. +.. ...+...-
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 3444433 458888988765433 12 23456789999987664 556666678999999875 122 22233233
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
.....+++.+.. +.+.++-...+.|.+.+++.................+++.|.+..|+.+.. ...+.|...++. |
T Consensus 77 ~~p~glavd~~~-~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~--~~~~~I~~~~~d-G 152 (316)
T 1ijq_A 77 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLN-G 152 (316)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETT-S
T ss_pred CCcCEEEEeecC-CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEcc--CCCCeEEEEcCC-C
Confidence 456788886543 356666677899999998765444444434457789999997776665542 113678888875 3
Q ss_pred ceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001176 575 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 653 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1132)
.....+....-.....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+.|
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V 231 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 231 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeE
Confidence 333333222222577899999888887765 5679999999754333333322222245677775 35555555667889
Q ss_pred EEEEcCCc
Q 001176 654 KILANSDG 661 (1132)
Q Consensus 654 ~iw~~~~~ 661 (1132)
..++..++
T Consensus 232 ~~~~~~~g 239 (316)
T 1ijq_A 232 FSANRLTG 239 (316)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 99988776
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.32 E-value=0.00068 Score=75.67 Aligned_cols=247 Identities=11% Similarity=-0.009 Sum_probs=152.0
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEE-EE
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-VA 423 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la-s~ 423 (1132)
.-.|.+..+.+ .++++ ..+.|+..++..+.... +......+..++|.+.+..|. +-
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEe
Confidence 45566666644 34443 24678888877654321 111234578999998655555 44
Q ss_pred eCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEee
Q 001176 424 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503 (1132)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~ 503 (1132)
...+.|..++.+++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....++++
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 567889999988754222 12222234578899986664 45566667889888876544333333344567889998
Q ss_pred ccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecc
Q 001176 504 HKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 582 (1132)
Q Consensus 504 ~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1132)
|.. +.++++-... +.|..++++.................++++|++..|+.+-. ..+.|..+|+........+..
T Consensus 211 p~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cCC-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 754 3455555455 78888888765554444444556789999998888777643 467899999874433323332
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe
Q 001176 583 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1132)
... ....+++. .+..+++-...+.|..++..+++.+..+.
T Consensus 287 ~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 287 GLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp SCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCC-CceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 222 45667773 33444444467788888876776666554
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.29 E-value=0.0011 Score=72.79 Aligned_cols=241 Identities=10% Similarity=-0.015 Sum_probs=151.6
Q ss_pred CeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE
Q 001176 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 486 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~ 486 (1132)
..+|.+..+++ +|+.+. ...|+..++.+..... .+ .....+..++|++.+.. ++++-...+.|..+++..+..
T Consensus 35 ~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~---~~-~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTL---LL-NNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp SSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEE---EE-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSC
T ss_pred CCcccccccCc-eeEeec-ccceEEEeCCCCeeEE---ee-cCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCCc
Confidence 34566655633 444443 3457777876643222 12 23345789999987664 455666778999999876654
Q ss_pred EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001176 487 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 566 (1132)
Q Consensus 487 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1132)
...+.........+++.+.. +.++++-...+.|.+.+++.................+++.|.+..|+.... ...+.|
T Consensus 108 ~~~~~~~~~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~--~~~~~I 184 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPRI 184 (349)
T ss_dssp EEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEEC--SSSCEE
T ss_pred eEEEeCCCCCccEEEEecCC-CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEecc--CCCCEE
Confidence 44333333456778887543 356677777889999998866555444444567789999997777766542 113779
Q ss_pred EEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEE
Q 001176 567 VEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 645 (1132)
Q Consensus 567 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1132)
..+++..... ..+....-.....++++|++..|+.+. ..+.|..+++........+... ......+++ .++.+.+
T Consensus 185 ~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ly~ 260 (349)
T 3v64_C 185 EASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYW 260 (349)
T ss_dssp EEEETTSCSC-EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEEEE
T ss_pred EEEeCCCCCc-EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEEEE
Confidence 9888764332 333222222578899999887777765 5678999998764433333322 224567777 3455555
Q ss_pred EEeCCCcEEEEEcCCc
Q 001176 646 VTTSDNGIKILANSDG 661 (1132)
Q Consensus 646 ~~~~dg~i~iw~~~~~ 661 (1132)
+-...+.|..++..++
T Consensus 261 td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 261 TDWHTKSINSANKFTG 276 (349)
T ss_dssp EETTTTEEEEEETTTC
T ss_pred ecCCCCeEEEEEccCC
Confidence 5556778888886666
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.28 E-value=0.001 Score=74.19 Aligned_cols=239 Identities=9% Similarity=-0.028 Sum_probs=151.7
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEE
Q 001176 409 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 488 (1132)
Q Consensus 409 ~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~ 488 (1132)
.|.+..+ ..+|+.+. ...|+..++.+..... +.........++|.+.+.. ++++-...+.|..+++..+....
T Consensus 80 ~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 80 SCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp CEEECSS-CCEEEEEC-BSCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEEE
T ss_pred eECCccc-cceeEeec-CccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcEE
Confidence 3555555 33444443 3568888887654322 2223346789999987664 55566677899999987665444
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 489 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
.+.........+++.+.. +.++++-...+.|.+.+++.......+.........+++.|.+..|+..-. ...+.|..
T Consensus 153 ~~~~~~~~p~glavd~~~-g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~--~~~~~I~r 229 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPRIEA 229 (386)
T ss_dssp EECSSCSCCCCEEEETTT-TEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEEC--SSSCEEEE
T ss_pred EEeCCCCCccEEEEEeCC-CeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEecc--CCCCEEEE
Confidence 443333455677876543 356667777888999888765544445444567789999998777776542 12377988
Q ss_pred EeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001176 569 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 647 (1132)
+++............ -.....++++|++..|+.+. ..+.|..+++........+... ......+++ .++.++++-
T Consensus 230 ~~~dG~~~~~~~~~~-~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td 305 (386)
T 3v65_B 230 SSMDGSGRRIIADTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTD 305 (386)
T ss_dssp EETTSCSCEEEECSS-CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEE
T ss_pred EeCCCCCcEEEEECC-CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEEee
Confidence 887643332222222 22577899998887777765 5678999998754443333322 234567888 445555666
Q ss_pred eCCCcEEEEEcCCc
Q 001176 648 TSDNGIKILANSDG 661 (1132)
Q Consensus 648 ~~dg~i~iw~~~~~ 661 (1132)
...+.|..++..++
T Consensus 306 ~~~~~V~~~~~~~G 319 (386)
T 3v65_B 306 WHTKSINSANKFTG 319 (386)
T ss_dssp TTTTEEEEEETTTC
T ss_pred CCCCeEEEEECCCC
Confidence 66788888886666
No 279
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.26 E-value=0.0024 Score=69.48 Aligned_cols=280 Identities=9% Similarity=-0.009 Sum_probs=150.2
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
...+.+|.|.+++. .+++| ..|.| ++..+.|+.-..... ........+.+|+|++ +..++
T Consensus 35 ~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~~- 94 (327)
T 2xbg_A 35 TATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGWI- 94 (327)
T ss_dssp SSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEEE-
T ss_pred CCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEEE-
Confidence 35799999988876 56655 45654 333444432111000 0111344688999986 44444
Q ss_pred EeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEE-EEecCCCCCeEEEE
Q 001176 423 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHEAPVYSVC 501 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~h~~~v~~i~ 501 (1132)
++.++.|.. ..+.++..........+.+.+..+.+.+++. .++.+. ++.|.. ....|+.- .....+...+..++
T Consensus 95 ~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~ 169 (327)
T 2xbg_A 95 VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLN 169 (327)
T ss_dssp EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEE
T ss_pred EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEE
Confidence 455664433 4444554432211112345678888887776 555554 554432 11234332 22334566788888
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
+.+. +.+++.+...+..+-+|-....-...-......+..+++.++++.++.+. ++.+++.+...++.-..+.
T Consensus 170 ~~~~--~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~ 242 (327)
T 2xbg_A 170 RSPS--GEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELL 242 (327)
T ss_dssp ECTT--SCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCB
T ss_pred EcCC--CcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEecc
Confidence 8764 35665554433333333211111111223445788899999988776552 4567666433233322222
Q ss_pred cc---cCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCC-CCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001176 582 GF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKILA 657 (1132)
Q Consensus 582 ~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 657 (1132)
.. ....+..+.+.+++..+++ +.++.| ++..+.++.-..+... .....+.++.|.+++ .+++++.+|.|.-++
T Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 243 SPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp CTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred CCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 11 1124788889887665555 457766 4555666655554421 112357889887555 466677888776654
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.25 E-value=0.0002 Score=73.42 Aligned_cols=204 Identities=11% Similarity=0.084 Sum_probs=132.2
Q ss_pred CCCeeEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEEeeC-CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccccee
Q 001176 837 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 913 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 913 (1132)
...+..++++|++..|++.. ++.|...|.. ++.++.+.- -....-.|++.+ ++.++++.-.++.+.++++.....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCC
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCe
Confidence 45799999999877666654 6789999998 888877742 225678899988 777777666778899998865432
Q ss_pred ---eeeec------cccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccc-cceeeeC--CCCCCCCCCCceeEEECC
Q 001176 914 ---KTKLK------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL-KSRFIQA--PAGRQSPLVGETKVQFHN 981 (1132)
Q Consensus 914 ---~~~l~------~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~-~~~~~~~--~~~~~~~~~~v~~~~~s~ 981 (1132)
+.... .......+|+|+|+++.|.++.......+|.++..... ....... ..+ .........+++.|
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~-~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR-QFTLDDVSGAEFNQ 182 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH-TCCSSCCCEEEEET
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcc-ccccCCceeEEEcC
Confidence 22221 23445789999999987777776655666666421000 0011110 000 00114578999999
Q ss_pred CCcEEEE-E-eCCeEEEEeCCCCceeecCCCCCC------CCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001176 982 DQTHLLV-V-HESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1044 (1132)
Q Consensus 982 dg~~l~~-~-~d~~v~vwd~~~~~~~~~~~~~~h------~~~i~~i~~s~dg~~las~~~dg~i~vwd~~ 1044 (1132)
....+.+ + ..+.+..+|.+++.+..+....+. -..--.|+|.++|+ |+..++.+.++++.-.
T Consensus 183 ~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 183 QKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp TTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred CCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 8766666 5 357788999987765554333221 13567899999998 5555888877777544
No 281
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.22 E-value=0.00076 Score=69.14 Aligned_cols=201 Identities=10% Similarity=0.098 Sum_probs=130.7
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 422 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 422 (1132)
.+.+..++|+|++..|+++...++.|...|.. ++.+.... +.+ ....-.|++.+++.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEEE
Confidence 35799999999887778878888999999987 66544211 122 246778899999987777
Q ss_pred EeCCCeEEEEEecCCCcee--eeeeee----cccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC---CCeEEEEec--
Q 001176 423 AFSKHIVHLYTYNPTGELR--QHLEID----AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---AGRKQYTFE-- 491 (1132)
Q Consensus 423 ~~~dg~i~iwd~~~~~~~~--~~~~l~----~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~---~~~~~~~~~-- 491 (1132)
.-.++.+.++++.....+. ....+. ........++|+|+++. |+++.......+|.+. ....+..+.
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecch
Confidence 6677889999987765422 111111 23446789999999985 4444443344444432 111122221
Q ss_pred -----CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CeEEEEEEcCCCCEEEEEe
Q 001176 492 -----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 492 -----~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~ 557 (1132)
.+...+.+++++|.. +.+++.....+.+..+|.... .+..+.... .....++|.++|+..+++
T Consensus 165 ~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs- 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS- 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-
T ss_pred hhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc-
Confidence 133467899999874 478888888889999987643 444333332 266899999999866664
Q ss_pred cCCCCCCeEEEEeC
Q 001176 558 TSKEGESHLVEWNE 571 (1132)
Q Consensus 558 ~~~~~~~~i~~wd~ 571 (1132)
. .+.++.+..
T Consensus 242 E----~n~~y~f~~ 251 (255)
T 3qqz_A 242 E----PNRFYRFTP 251 (255)
T ss_dssp T----TTEEEEEEC
T ss_pred C----CceEEEEEe
Confidence 2 445666653
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.18 E-value=0.0033 Score=70.34 Aligned_cols=232 Identities=9% Similarity=0.005 Sum_probs=148.3
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC----eEEEEecCCC
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 494 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~----~~~~~~~~h~ 494 (1132)
+|+.+ ....|+..++.+..... +......+..++|++.+.. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEe-ccceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 44444 34678888888754332 2234557889999987664 4555566788999997652 2233333344
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
.....+++.+.. +.+.++-...+.|.+.+++.......+.........+++.|.+.+|+..-. ...+.|...++...
T Consensus 159 ~~p~glavD~~~-~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~--~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETTT-TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC--SSSCCEEEEETTSC
T ss_pred CCcccEEEEecC-CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC--CCCCEEEEEeCCCC
Confidence 567888887643 366677777889999998866555555545556889999997777766532 12367888888643
Q ss_pred ceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001176 575 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 653 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1132)
.........-. ....+++++++..|+.+. ..+.|..+|+........+...........+++. .+.++++-...+.|
T Consensus 236 ~~~~~~~~~l~-~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred ccEEEEECCCC-ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 33322222222 678899999888888775 5678999998765544444432222344567763 34455555667889
Q ss_pred EEEEcCCc
Q 001176 654 KILANSDG 661 (1132)
Q Consensus 654 ~iw~~~~~ 661 (1132)
..++..++
T Consensus 314 ~~~~~~~G 321 (400)
T 3p5b_L 314 FSANRLTG 321 (400)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 88887777
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.17 E-value=0.0074 Score=65.10 Aligned_cols=231 Identities=9% Similarity=-0.037 Sum_probs=138.5
Q ss_pred CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEE-eCCCeEEEEEecCC---Cce
Q 001176 365 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPT---GEL 440 (1132)
Q Consensus 365 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~-~~dg~i~iwd~~~~---~~~ 440 (1132)
.+.|+..|+.+++.... + .....+..++|++++..|..+ ..++.|..+++++. ...
T Consensus 9 ~~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~ 68 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 68 (316)
T ss_dssp BSSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred CCeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc
Confidence 36788888887653221 1 123467899999876655544 45689999998862 222
Q ss_pred eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecC-Ce
Q 001176 441 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-GK 519 (1132)
Q Consensus 441 ~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-g~ 519 (1132)
.. .+...-.....+++.+.+.. +.++-...+.|.+.|+........+.........++++|.. +.++++.... +.
T Consensus 69 ~~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~-g~ly~~d~~~~~~ 144 (316)
T 1ijq_A 69 DT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAK 144 (316)
T ss_dssp EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCE
T ss_pred EE--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCC-CEEEEEccCCCCe
Confidence 11 12222235678999876654 45566678899999976543333333334567889988754 2444444333 68
Q ss_pred EEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeee-ccc-cCCceEEEEEeCCC
Q 001176 520 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY-SGF-RKRSLGVVQFDTTR 597 (1132)
Q Consensus 520 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~-~~~~v~~~~~~~~~ 597 (1132)
|...+++.................+++++++..|+.+-. ..+.|..+|+.... .+.+ ... .......+++. .+
T Consensus 145 I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~ 219 (316)
T 1ijq_A 145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-ED 219 (316)
T ss_dssp EEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TT
T ss_pred EEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CC
Confidence 888887654433333334457889999998888877643 36689999987433 2222 211 11135567775 34
Q ss_pred CEEEEEEcCCeEEEEECCCCeeEEEEe
Q 001176 598 NRFLAAGDEFQIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1132)
..+++-...+.|..++..+++.+..+.
T Consensus 220 ~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 220 KVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 444444467788888877766555443
No 284
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.15 E-value=0.007 Score=65.69 Aligned_cols=194 Identities=12% Similarity=0.064 Sum_probs=112.3
Q ss_pred CCeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEE-eeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE-EEc--cccee
Q 001176 838 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI-YNV--RVDEV 913 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~i-wd~--~~~~~ 913 (1132)
..+..+++.+++..++++.+|.|.. ..+.++.-.. .......+..+++.+ ++.+++++. +|.++. +|- .+.+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 3467788888888777776665422 1222322222 234456789999999 788887664 455444 332 22233
Q ss_pred eeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCe
Q 001176 914 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 993 (1132)
Q Consensus 914 ~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 993 (1132)
+. ......+..++++++++.++ ++.+|.+++++.+.++.-. .+... .......+..+++.+++..++++.++.
T Consensus 199 ~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~--~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g~ 271 (327)
T 2xbg_A 199 HN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWG--ELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAGA 271 (327)
T ss_dssp EE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEEC--CCBCT--TSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred CC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeE--eccCC--cccCCcceEEEEecCCCEEEEEeCCCe
Confidence 32 23456788999999987665 4557878777533232111 11111 000013478889999998888888887
Q ss_pred EEEEeC-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001176 994 ISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1043 (1132)
Q Consensus 994 v~vwd~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~ 1043 (1132)
+. +.. .+..-........+...+.++.|.+++. +++++.+|.|.-++-
T Consensus 272 i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 272 LL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 73 333 3333222221111245678899986665 555667898777664
No 285
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.14 E-value=0.00025 Score=85.75 Aligned_cols=137 Identities=7% Similarity=-0.046 Sum_probs=79.0
Q ss_pred CCCEEEEeeCCeEEEEECCCCeEEEEeeCCC---------CCeEEEEEeCCCCCeEEEEeCCC-----------cEEEEE
Q 001176 848 NDSYVMSASGGKVSLFNMMTFKVMTMFMSPP---------PAATFLAFHPQDNNIIAIGMEDS-----------SVQIYN 907 (1132)
Q Consensus 848 dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~---------~~i~~l~~sp~~~~~lasg~~dg-----------~v~iwd 907 (1132)
+|+.+..+....+..||..+..-......+. ..-.++.|...++++++.|+.++ .|.+||
T Consensus 359 ~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd 438 (656)
T 1k3i_A 359 KGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGE 438 (656)
T ss_dssp GGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCS
T ss_pred CCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCC
Confidence 3333333334568899988765433322111 12345556544788999988543 678888
Q ss_pred cccceeeeee--ccccCCe-eEEEEcCCCCEEEEEcCC-----------CcEEEEECCCcccccceeeeCCCCCCCCCCC
Q 001176 908 VRVDEVKTKL--KGHQNRI-TGLAFSPTLNALVSSGAD-----------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 973 (1132)
Q Consensus 908 ~~~~~~~~~l--~~h~~~V-~~l~~spdg~~l~s~~~D-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1132)
..+.+-.... ..+..+. .+++..|+++.++.||.+ ..+.+||..+.+-.. +.... .+...
T Consensus 439 ~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~---~~~~~---~~R~~ 512 (656)
T 1k3i_A 439 PGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK---QNPNS---IVRVY 512 (656)
T ss_dssp TTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE---CCCCS---SCCCT
T ss_pred CCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee---cCCCC---Ccccc
Confidence 8766533322 2233333 344667899999999854 468999997754211 11111 11122
Q ss_pred ceeEEECCCCcEEEEEe
Q 001176 974 ETKVQFHNDQTHLLVVH 990 (1132)
Q Consensus 974 v~~~~~s~dg~~l~~~~ 990 (1132)
.....+.+||+.+++++
T Consensus 513 hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 513 HSISLLLPDGRVFNGGG 529 (656)
T ss_dssp TEEEEECTTSCEEEEEC
T ss_pred ccHhhcCCCcEEEecCC
Confidence 34566789999988864
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.13 E-value=0.00076 Score=76.31 Aligned_cols=250 Identities=8% Similarity=0.025 Sum_probs=148.0
Q ss_pred CeeEEEEeeC--CCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCC---C-cEEEEEcccc
Q 001176 839 SAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---S-SVQIYNVRVD 911 (1132)
Q Consensus 839 ~v~~~~~s~d--g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d---g-~v~iwd~~~~ 911 (1132)
....++++|+ +..|..+. .+.|+.+|..+++.... .........++|++ +++++++-... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 3568999985 45566665 58899999987776544 33556689999999 77755443321 1 2333333222
Q ss_pred ee-eeeeccccCCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE
Q 001176 912 EV-KTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 989 (1132)
Q Consensus 912 ~~-~~~l~~h~~~V~~l~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 989 (1132)
.. ...+. .......++++| +|.+.++-..++.|+.++..++..... ....... .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~~~~-----~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE-EVMMDTK-----GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-EEECSCC-----SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-EeccCCC-----CCcccEEEeCCCCEEEEE
Confidence 11 01121 234456789999 777777777788899999886653111 1111111 123469999999977775
Q ss_pred --eCCeEEEEeCC--CCce---eecCC---CCC---------CCCCeEEEEE---------ccCCCEEEEEecCCcEEEE
Q 001176 990 --HESQISVYDSK--LECS---RSWSP---KDA---------LPAPISSAIY---------SCDGLLVYAGFCDGAIGVF 1041 (1132)
Q Consensus 990 --~d~~v~vwd~~--~~~~---~~~~~---~~~---------h~~~i~~i~~---------s~dg~~las~~~dg~i~vw 1041 (1132)
..+.|..++.. ...+ ..+.. ..+ ....-..+++ .++|.+.++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 45789887763 2211 11110 000 1223567899 6777777776677889999
Q ss_pred eCCCcceecccCCCc-----cccc-cccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1042 DAETLRFRCRIGPSA-----YIPT-YAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1042 d~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
+. +|.......... +... ......-..+..++++|.++.++++-...++|+..+++
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 464432222110 0000 00012234688999995577788877778899988764
No 287
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=0.00046 Score=78.21 Aligned_cols=248 Identities=13% Similarity=0.082 Sum_probs=144.9
Q ss_pred CeeEEEEee-CCCEEEEee-CCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeC-CC----cEEEEEcccc
Q 001176 839 SAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-DS----SVQIYNVRVD 911 (1132)
Q Consensus 839 ~v~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~-dg----~v~iwd~~~~ 911 (1132)
....++++| ++..|.++. .+.|+.+|..+++... +.........|+|++ ++++|.++.. ++ .+.+++ ..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 457889998 466666666 5789999998766543 333556688999999 7875555544 22 344444 333
Q ss_pred eee--eeeccccCCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE
Q 001176 912 EVK--TKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 912 ~~~--~~l~~h~~~V~~l~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
... ..+. ......+++++| +|.++++-..++.|..++..++.... ....... .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 322 2222 223467789999 77777777788899999998754311 1111111 23578999999997766
Q ss_pred E--eCCeEEEEeCCCC--ce---eecCC---CCCC---------CCCeE-EEEEc--------cCCCEEEEEecCCcEEE
Q 001176 989 V--HESQISVYDSKLE--CS---RSWSP---KDAL---------PAPIS-SAIYS--------CDGLLVYAGFCDGAIGV 1040 (1132)
Q Consensus 989 ~--~d~~v~vwd~~~~--~~---~~~~~---~~~h---------~~~i~-~i~~s--------~dg~~las~~~dg~i~v 1040 (1132)
+ ..+.|..++.++. .+ ..+.. ..+. -..-. .++.. ++|.+.++-...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 5 4678998877331 11 11110 0000 01122 44443 34555555556678888
Q ss_pred EeCCCcceecccCCC-----ccccc-cccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecC
Q 001176 1041 FDAETLRFRCRIGPS-----AYIPT-YAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1098 (1132)
Q Consensus 1041 wd~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~ 1098 (1132)
++ .+|......... .+... ....+.-..+..++++|+++.++++-...++|+..+++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 445443222110 00000 00011224688999998556677777777888887764
No 288
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.09 E-value=0.00033 Score=86.01 Aligned_cols=200 Identities=6% Similarity=-0.049 Sum_probs=113.1
Q ss_pred CCCc-CeEEEEEc-CCCCeEEEEeC-C----CeEEEEEecCC-CceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC-
Q 001176 403 DAAI-SVNRCVWG-PDGLMLGVAFS-K----HIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD- 473 (1132)
Q Consensus 403 ~h~~-~V~~v~~s-pdg~~las~~~-d----g~i~iwd~~~~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d- 473 (1132)
+|.- .+...+|| |||++||.+.. + .+|+++|+.++ +.+.. .+.. ....++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~---~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG---TNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE---ECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC---ceeeEEEecCCCE--EEEEEECC
Confidence 4543 68889999 99999986543 2 35999999998 63321 1211 2357899999985 4433333
Q ss_pred ----CcEEEEECCCCeE--EEEecC-CCCCeEEEEeeccCCccEEEEEec---CCeEEEEEcCCCC-ce--EEe-cCCCC
Q 001176 474 ----KMIKVWDVVAGRK--QYTFEG-HEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLG-SR--VDY-DAPGN 539 (1132)
Q Consensus 474 ----g~v~vwd~~~~~~--~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~-~~--~~~-~~~~~ 539 (1132)
..|+++++.++.. ...+.. .......+.|+|+ |.+|+..+. ...|.++|+.++. .. ..+ .....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD--TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT--SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCC--CCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 3688889887642 223322 2344567778765 466665552 3468888887753 22 323 22334
Q ss_pred eEEEEEEcCCCCEEEEEecCC-CCCCeEEEEeCCCC-ceee-eeccccCCceEEEEEeCCCCEEE-EEEcCCe--EEEEE
Q 001176 540 WCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEG-AIKR-TYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQ--IKFWD 613 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd 613 (1132)
...++.|+. |+.|+..+... .+...|..+|+.++ .... .+.......+..+.+. ++.|+ +...++. |++++
T Consensus 321 ~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 321 VRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp CCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEE
T ss_pred ceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEe
Confidence 445555433 66665554321 24567888888753 2222 2222222134444444 55554 4556775 45556
Q ss_pred C
Q 001176 614 M 614 (1132)
Q Consensus 614 ~ 614 (1132)
+
T Consensus 398 l 398 (751)
T 2xe4_A 398 A 398 (751)
T ss_dssp C
T ss_pred c
Confidence 5
No 289
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.09 E-value=0.0013 Score=73.79 Aligned_cols=208 Identities=10% Similarity=-0.002 Sum_probs=134.8
Q ss_pred CCCeeEEEEeeCCCEEEEee--CCeEEEEECCCC----eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc
Q 001176 837 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 910 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 910 (1132)
...+..++|++.+..|...+ .+.|+.+++... .....+.........+++.+.+++++++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678999999888777776 688999998752 222333334456789999984555666666678999999876
Q ss_pred ceeeeeeccccCCeeEEEEcCCCCEEEEEc-C-CCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEE
Q 001176 911 DEVKTKLKGHQNRITGLAFSPTLNALVSSG-A-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 988 (1132)
Q Consensus 911 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~~-~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 988 (1132)
......+........+|++.|.+..|..+. . .+.|...+++...... .+.. + ......+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~~~--~----l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE--N----IQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EECS--S----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EEEC--C----CCceEEEEEEeCCCEEEE
Confidence 544444443445578999999766555444 2 3678888887643211 1111 1 134689999998888887
Q ss_pred Ee--CCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccC
Q 001176 989 VH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1053 (1132)
Q Consensus 989 ~~--d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~ 1053 (1132)
++ .+.|..+|+++.....+...........++++ ..+.++.+-...+.|..+|..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 54 57899999966555444332222334556776 334455566667889999988887765554
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.96 E-value=0.014 Score=62.85 Aligned_cols=208 Identities=9% Similarity=0.007 Sum_probs=129.6
Q ss_pred CeEEEEEcCCCCeE-EEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001176 407 SVNRCVWGPDGLML-GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 485 (1132)
Q Consensus 407 ~V~~v~~spdg~~l-as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~ 485 (1132)
.+..++|.+.+..| .+-...+.|..++.+++..... .+...-.....+++.+.+.. ++++-...+.|.++++....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~--~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE--EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE--EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCc
Confidence 56789999865544 4545678899999887632211 12222245678999976654 55566667899999976543
Q ss_pred EEEEecCCCCCeEEEEeeccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCC
Q 001176 486 KQYTFEGHEAPVYSVCPHHKESIQFIFSTA--IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563 (1132)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1132)
....+.........+++.|.. ..|+.+. ..+.|...+++...........-.....+++++++..|+.+-. ..
T Consensus 113 ~~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~ 187 (318)
T 3sov_A 113 RKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KL 187 (318)
T ss_dssp CEEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TT
T ss_pred EEEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CC
Confidence 332333445567899998754 3444443 3578888887754444333334456789999998888877643 46
Q ss_pred CeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEe
Q 001176 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 624 (1132)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1132)
+.|..+|+..........+... ....+++.. +..+++-...+.|..++..+++....+.
T Consensus 188 ~~I~~~d~dG~~~~~~~~~~~~-~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVVKGSLP-HPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETTSCSCEEEECSCCS-CEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEcCCCCceEEEecCCCC-CceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 7899999874333222222222 455677653 3344444467788888887776655554
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.93 E-value=0.0011 Score=74.92 Aligned_cols=240 Identities=8% Similarity=0.114 Sum_probs=137.3
Q ss_pred CeEEEEEcC-CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC-CC----cEEEEE
Q 001176 407 SVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DK----MIKVWD 480 (1132)
Q Consensus 407 ~V~~v~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-dg----~v~vwd 480 (1132)
....++++| ++..|.++...+.|+.+|.+++.... +.........++|+++++. |+.+.. .+ .+.+.+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~----~~~~~~~P~~ia~d~~G~~--lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST----VYSGLSKVRTICWTHEADS--MIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE----EECCCSCEEEEEECTTSSE--EEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE----EecCCCCcceEEEeCCCCE--EEEEeCCCCcccceEEEEe
Confidence 567899998 45556666555889999988754222 2234456889999999984 444433 22 233344
Q ss_pred CCCCeEE--EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCeEEEEEEcCCCCEEEEEe
Q 001176 481 VVAGRKQ--YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 481 ~~~~~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~ 557 (1132)
..+... ..+.. ......++++|. ++.++++-..++.|..++........... ........++|+|+|++|+.+.
T Consensus 212 -~~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 212 -RESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp -GGGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred -CCCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 333221 22221 233566777663 34667777778899999987654422222 2234567899999999776664
Q ss_pred cCCCCCCeEEEEeCCC--Cce--eeeeccc------cC--------CceE-EEEEe--------CCCCEEEEEEcCCeEE
Q 001176 558 TSKEGESHLVEWNESE--GAI--KRTYSGF------RK--------RSLG-VVQFD--------TTRNRFLAAGDEFQIK 610 (1132)
Q Consensus 558 ~~~~~~~~i~~wd~~~--~~~--~~~~~~~------~~--------~~v~-~~~~~--------~~~~~l~~~~~dg~i~ 610 (1132)
. ..+.|..++... +.. +..+.+. .. .... .++.. +++..+++=...+.|+
T Consensus 289 ~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 289 V---NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp T---TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred C---CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 3 367788887653 221 1222211 00 0122 45553 3344444444677899
Q ss_pred EEECCCCeeEEEEeC---------CC------CCCCcceEEEcCC-CCEEEEEeCCCcEEEEEcC
Q 001176 611 FWDMDNMNMLTTVDA---------DG------GLPASPRLRFNKE-GSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 611 iwd~~~~~~~~~~~~---------~~------~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~ 659 (1132)
.++. ++........ .+ .......++++++ +.++++-...+.|+.++++
T Consensus 366 ~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 9884 4544433321 00 0123568899984 5555555556778777653
No 292
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.87 E-value=0.00013 Score=88.18 Aligned_cols=208 Identities=11% Similarity=-0.003 Sum_probs=127.8
Q ss_pred CCeeEEEEeeCCCEEEEee--CCeEEEEECCC----CeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc
Q 001176 838 ESAACIALSKNDSYVMSAS--GGKVSLFNMMT----FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 911 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 911 (1132)
..+..++|++++..|..+. .+.|+.+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3467899999888888776 57899999875 22222222222345678888635666666566788999998755
Q ss_pred eeeeeeccccCCeeEEEEcCCCCEEEEEc-CC-CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE
Q 001176 912 EVKTKLKGHQNRITGLAFSPTLNALVSSG-AD-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 989 (1132)
Q Consensus 912 ~~~~~l~~h~~~V~~l~~spdg~~l~s~~-~D-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 989 (1132)
.....+.........|++.|++.+|..+. .. +.|...++...... ..+.. . ......++|+|++.+|.++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~--~l~~~--~----l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVTE--N----IQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC--EESCS--S----CSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee--EEEeC--C----CCCccEEEEeccCCEEEEE
Confidence 43333333334567899998765554443 22 67877777653211 11111 0 1345789999987777765
Q ss_pred --eCCeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCC
Q 001176 990 --HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1054 (1132)
Q Consensus 990 --~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~ 1054 (1132)
..+.|.++++.+.....+............|++..+ .++++....+.|..++..+|+.+..+..
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 457899999966544444322111223344555443 4455555678999999999988777653
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.87 E-value=0.0027 Score=71.75 Aligned_cols=241 Identities=9% Similarity=0.093 Sum_probs=137.9
Q ss_pred cCeEEEEEcCC--CCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC---Cc-EEEE
Q 001176 406 ISVNRCVWGPD--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD---KM-IKVW 479 (1132)
Q Consensus 406 ~~V~~v~~spd--g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d---g~-v~vw 479 (1132)
.....++|+|+ +..|..+...+.|+.+|..++.... +.........++|+++|+ ++++.... .. +...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~----~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI----KTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE----ECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE----eecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 34678999995 4445555444889999987764332 333445688999999998 55555421 12 3333
Q ss_pred ECCCCeE-EEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE-Eec-CCCCeEEEEEEcCCCCEEEEE
Q 001176 480 DVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYD-APGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 480 d~~~~~~-~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~-~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
+...+.. ...+. .-.....+++++. ++.+.++-..++.|+.+|..++.... ... ........++++|+|++|+.+
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 3222111 01111 1233455677653 33566666677889999887655412 211 222234579999999977766
Q ss_pred ecCCCCCCeEEEEeCC--CCce--eeeeccc------c--------CCceEEEEE---------eCCCCEEEEEEcCCeE
Q 001176 557 GTSKEGESHLVEWNES--EGAI--KRTYSGF------R--------KRSLGVVQF---------DTTRNRFLAAGDEFQI 609 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~--~~~~--~~~~~~~------~--------~~~v~~~~~---------~~~~~~l~~~~~dg~i 609 (1132)
-. ..+.|+.++.. ++.. ...+.+. . -.....+++ .+++..+++-...+.|
T Consensus 291 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 291 YN---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ET---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred eC---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 43 46789998765 3322 1122211 0 013556888 6666665555577889
Q ss_pred EEEECCCCeeEEEEeCCCC----------------CCCcceEEEc-CCCCEEEEEeCCCcEEEEEcC
Q 001176 610 KFWDMDNMNMLTTVDADGG----------------LPASPRLRFN-KEGSLLAVTTSDNGIKILANS 659 (1132)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~ 659 (1132)
+.++. ++... ++.+... ......++++ ++|.++++-...+.|+.++++
T Consensus 368 ~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 368 RVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 99985 45433 3322111 1234578888 566655555556777777653
No 294
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.87 E-value=0.003 Score=71.35 Aligned_cols=254 Identities=6% Similarity=-0.019 Sum_probs=148.6
Q ss_pred CeeEEEEee-CCCEEEEee--CCeEEEEECCCCeEEEEeeCC---CCCeEEEEE-------eCCCCCeEEEEeCCC----
Q 001176 839 SAACIALSK-NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP---PPAATFLAF-------HPQDNNIIAIGMEDS---- 901 (1132)
Q Consensus 839 ~v~~~~~s~-dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~-------sp~~~~~lasg~~dg---- 901 (1132)
....|+|+| +...|.++. .+.|++.|+.++......... ......|+| ++ +++.|.++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 455565555 367999999887765544332 235889999 99 777565555543
Q ss_pred ---cEEEEEccc-ceee-----eeeccccCCeeEEEEcCC-CCEEEEEcCCCcEEEEECC-------Cccc------c--
Q 001176 902 ---SVQIYNVRV-DEVK-----TKLKGHQNRITGLAFSPT-LNALVSSGADAQLCMWSID-------KWEK------L-- 956 (1132)
Q Consensus 902 ---~v~iwd~~~-~~~~-----~~l~~h~~~V~~l~~spd-g~~l~s~~~D~~i~iwd~~-------~~~~------~-- 956 (1132)
.|.+++... +... ..+.. .....+++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665443 2221 12221 123467889994 5666677788889999997 4442 0
Q ss_pred --cceeeeCCCCCCCCCCCceeEEECCCCcEEEEE--eCCeEEEEeCCC--Cce---eecC---CCCCC---------CC
Q 001176 957 --KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKL--ECS---RSWS---PKDAL---------PA 1015 (1132)
Q Consensus 957 --~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~--~~~---~~~~---~~~~h---------~~ 1015 (1132)
.........+ .....++|+|+|++|.++ ..+.|+.++..+ ..+ ..+. ...++ -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0011222111 235789999999976665 467888866522 211 1111 01111 11
Q ss_pred CeE-EEEEc-------cCCCEEEEEecCCcEEEEeCCCcceecccCCCc------------cccc-cccCCCCCCcEEEE
Q 001176 1016 PIS-SAIYS-------CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA------------YIPT-YAVSSNTAHPLVIA 1074 (1132)
Q Consensus 1016 ~i~-~i~~s-------~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~v~~~~ 1074 (1132)
.-. .++.. ++|.++++=...++|+.++ .+|.. ..+.... +... ....+.-..+..++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 233 34444 4566666666778899998 45643 3332110 0000 01122335688999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1075 PHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1075 ~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
++++++.+.++-....+|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 998447777777778899999987654
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.86 E-value=0.014 Score=62.67 Aligned_cols=226 Identities=10% Similarity=-0.001 Sum_probs=141.6
Q ss_pred CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeE-EEEecCCCCCeEEEEeec
Q 001176 426 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHH 504 (1132)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~h~~~v~~i~~~~ 504 (1132)
...|+..++++...... ..+. .......++|.+.+.. ++++-...+.|..+++..+.. ...+...-.....+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~-~~~~-~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENAT-IVVG-GLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCE-EEEE-EEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEE-EEec-CCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence 45789999887641111 1122 2235678999986654 556666778999999876532 122222234466788765
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc
Q 001176 505 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 584 (1132)
Q Consensus 505 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1132)
.. +.++++-...+.|.+++++.................+++.|.+..|+.+.. ...+.|...++.... ...+....
T Consensus 89 ~~-g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~--~~~~~I~r~~~dG~~-~~~~~~~~ 164 (318)
T 3sov_A 89 LG-EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMDGSS-RFIIINSE 164 (318)
T ss_dssp TT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEEC--SSSCEEEEEETTSCS-CEEEECSS
T ss_pred CC-CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEec--CCCCEEEEEEcCCCC-eEEEEECC
Confidence 43 356677777889999998765544444445567789999997766666532 125678888876332 22222111
Q ss_pred CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 585 KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
-...+.+++++++..|+.+. ..+.|..+|+............ ......+++.. +.++.+-...+.|..++..++
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC--CCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 22567899999887777765 5688999998754433333211 23456777753 345555556788999988777
No 296
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.86 E-value=0.015 Score=70.43 Aligned_cols=231 Identities=9% Similarity=-0.005 Sum_probs=145.1
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCC----eEEEEecCCC
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 494 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~----~~~~~~~~h~ 494 (1132)
+|+.+ ....|+..++....... +......+..|+|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~----l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCccee----eecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 44444 33457777877654332 2234456789999986664 5556666788999998653 2233343344
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC
Q 001176 495 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 574 (1132)
Q Consensus 495 ~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1132)
.....|++.+.+ +.++++-...+.|.+.+++.......+.........|++.|.+.+|+..-. .....|...++...
T Consensus 471 ~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~--g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSC
T ss_pred CCcceeeeeecC-CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecC--CCCCeEEEEecCCC
Confidence 567788887653 256677777899999999866554455445557889999998777766532 11367888888744
Q ss_pred ceeeeeccccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEE-eCCCc
Q 001176 575 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNG 652 (1132)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~ 652 (1132)
.....+.... .....|++++.+..|+.+. ..+.|...++........+..........+|++. +..|+.+ ...+.
T Consensus 548 ~~~~lv~~~l-~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~ 624 (791)
T 3m0c_C 548 DIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA 624 (791)
T ss_dssp CEEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ceEEEEeCCC-CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCE
Confidence 4333333222 2678899998888887775 5678999999765555544433222234466653 3344444 45677
Q ss_pred EEEEEcCCc
Q 001176 653 IKILANSDG 661 (1132)
Q Consensus 653 i~iw~~~~~ 661 (1132)
|...+..++
T Consensus 625 I~~~dk~tG 633 (791)
T 3m0c_C 625 IFSANRLTG 633 (791)
T ss_dssp EEEEETTTC
T ss_pred EEEEeCCCC
Confidence 888887776
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.83 E-value=0.019 Score=69.73 Aligned_cols=212 Identities=8% Similarity=-0.056 Sum_probs=129.1
Q ss_pred CcCeEEEEEcCCCCeE-EEEeCCCeEEEEEecCCCce-eeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001176 405 AISVNRCVWGPDGLML-GVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 482 (1132)
Q Consensus 405 ~~~V~~v~~spdg~~l-as~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~ 482 (1132)
...+..++|.+.+..| ++-...+.|+.+++...... .....+.........|++.+.+.. ++++-...+.|.+.++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence 4467899999865554 45455678999998763210 011122223456778999988865 55666778899999976
Q ss_pred CCeEEEEecCCCCCeEEEEeeccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCC
Q 001176 483 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 561 (1132)
Q Consensus 483 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1132)
.......+...-....+|++.|.. +.++++-... +.|...+++.......+.........|++.+.+..|+.+-.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~--- 577 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS--- 577 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---
T ss_pred CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---
Confidence 544333333344568899998754 2444443333 78888888765555555545567899999988888877642
Q ss_pred CCCeEEEEeCCCCceeeeecccc-CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEE
Q 001176 562 GESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTV 623 (1132)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 623 (1132)
+...|...++........+.... -.....+++. +.+|+.+. ..+.|...|..+++.+..+
T Consensus 578 ~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 35679999986544333333211 1123445553 34555544 5577777777666555544
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.78 E-value=0.0073 Score=64.12 Aligned_cols=194 Identities=12% Similarity=0.141 Sum_probs=122.7
Q ss_pred EEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccC--Ccc---EEEEEec---CCeEEEEEcCC-CCceEEecC
Q 001176 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE--SIQ---FIFSTAI---DGKIKAWLYDY-LGSRVDYDA 536 (1132)
Q Consensus 466 ~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~--~~~---~l~s~s~---dg~i~~wd~~~-~~~~~~~~~ 536 (1132)
+++.....+-+.++|+ +|+.++.+.. +.++.+..-|.- .|. ++++... +++|++|+++. ...+..+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4666666789999998 9999988864 567777665521 111 2333333 57899997742 223333311
Q ss_pred ------CC-CeEEEEEE--cCC-CC-EEEEEecCCCCCCeEEEEeCC-------CCceeeeeccccCCceEEEEEeCCCC
Q 001176 537 ------PG-NWCTMMAY--SAD-GT-RLFSCGTSKEGESHLVEWNES-------EGAIKRTYSGFRKRSLGVVQFDTTRN 598 (1132)
Q Consensus 537 ------~~-~~v~~~~~--s~~-~~-~l~~~~~~~~~~~~i~~wd~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1132)
.. ..+..+|+ +|. ++ ++++.. +++.+..|++. +.+.+++|.... .+..|...+...
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~----k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g 192 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTG----KEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYG 192 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEEC----SSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEEC----CCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCC
Confidence 11 45667777 774 44 344443 36789888882 346677777644 578889999999
Q ss_pred EEEEEEcCCeEEEEECC-----CCeeEEEEeCCCCCCCcceEEE--cCCCC-EEEEEe-CCCcEEEEEcCCcceeeeec
Q 001176 599 RFLAAGDEFQIKFWDMD-----NMNMLTTVDADGGLPASPRLRF--NKEGS-LLAVTT-SDNGIKILANSDGVRLLRML 668 (1132)
Q Consensus 599 ~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~--s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~ 668 (1132)
+|+.+-++.-|..++.+ +++.+..+....-...+..|++ .++++ +|++++ .+.++.+||.....+.+..+
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 99999998777777754 3455555532222225677877 45555 555555 57799999986332444444
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=0.013 Score=66.22 Aligned_cols=245 Identities=12% Similarity=0.095 Sum_probs=139.1
Q ss_pred CeEEEEEcC-CCCeEEEE-eCCCeEEEEEecCCCceeeeeeee-cccCCEEEEEE-------ecCCCcEEEEEEcCCC--
Q 001176 407 SVNRCVWGP-DGLMLGVA-FSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAF-------AHPNKQLCIVTCGDDK-- 474 (1132)
Q Consensus 407 ~V~~v~~sp-dg~~las~-~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~v~~v~~-------s~d~~~~~l~s~~~dg-- 474 (1132)
....|+|+| +...|..+ ...+.|++.|.+++.... ..... ........++| ++++.. |+.....+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 567899999 45545444 444678888888754332 11111 11235889999 999984 44443332
Q ss_pred -----cEEEEECCC-CeEE-----EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcC-------CCCc------
Q 001176 475 -----MIKVWDVVA-GRKQ-----YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-------YLGS------ 530 (1132)
Q Consensus 475 -----~v~vwd~~~-~~~~-----~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~-------~~~~------ 530 (1132)
.|.+.+... |... ..+... .....++++|. ++.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 366666333 2221 122111 13346677664 34677777788899999987 4432
Q ss_pred -----e-EEe-cCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCC--CCce--eeeeccc------cC--------
Q 001176 531 -----R-VDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAI--KRTYSGF------RK-------- 585 (1132)
Q Consensus 531 -----~-~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~--~~~~~~~------~~-------- 585 (1132)
. ..+ .......+.++|+|+|++|+.+-. ...+|+.++.. ++.. ...+.+. .+
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1 112 223345689999999997666532 46778886653 3322 1222221 10
Q ss_pred CceE-EEEEe-------CCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCC----------------------CCCCcceE
Q 001176 586 RSLG-VVQFD-------TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG----------------------GLPASPRL 635 (1132)
Q Consensus 586 ~~v~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~~ 635 (1132)
.... .++.. +++..+++=..+..|+.++. ++. +.++.+.+ .......|
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 0233 34554 44555555557889999984 553 44443221 01234578
Q ss_pred EEcCC-CCEEEEEeCCCcEEEEEcCCc
Q 001176 636 RFNKE-GSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 636 ~~s~~-~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
+++++ |.++++=.....||.+++...
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 88886 665555556778888887654
No 300
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.58 E-value=0.0096 Score=62.65 Aligned_cols=203 Identities=11% Similarity=0.072 Sum_probs=125.1
Q ss_pred CeeEEEEeeCCCEEEEee--CCeEEEEECCCCeEEEE-eeC----CC--CCeEEEEE---eCCCCCeEEEEeC-------
Q 001176 839 SAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTM-FMS----PP--PAATFLAF---HPQDNNIIAIGME------- 899 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~-~~~----~~--~~i~~l~~---sp~~~~~lasg~~------- 899 (1132)
.-.+++|.+....+..++ .++|..||...+..... +.+ .. ..+..|.| .| +++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence 345788988667776666 89999999986644333 222 11 13578999 68 6888876442
Q ss_pred ------CCcEEEEEcc---cceeeeeec--ccc-----------CCeeEEEEcCCCCEEEEEcCC-CcEEEEECCCcccc
Q 001176 900 ------DSSVQIYNVR---VDEVKTKLK--GHQ-----------NRITGLAFSPTLNALVSSGAD-AQLCMWSIDKWEKL 956 (1132)
Q Consensus 900 ------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~spdg~~l~s~~~D-~~i~iwd~~~~~~~ 956 (1132)
+..|..||+. +++.+.... ... .....++..++|+..++++.- +.|...+.+... .
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~ 171 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-V 171 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-E
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-E
Confidence 6789999999 777665432 111 247899999999999998887 877777666532 2
Q ss_pred cceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eCCeEEEEeCCCCceeecC----CCCCCCCCeEEE-EEccCCCE-E
Q 001176 957 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWS----PKDALPAPISSA-IYSCDGLL-V 1029 (1132)
Q Consensus 957 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~----~~~~h~~~i~~i-~~s~dg~~-l 1029 (1132)
....+....... ....+.++++|+|+.|++. ..+.+..+|+.......+. ...+.......| .--.+|+. |
T Consensus 172 ~~~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll 249 (334)
T 2p9w_A 172 STFAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL 249 (334)
T ss_dssp EEEEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred eeeeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence 211222211111 1456799999999988884 4888999998421110011 100112233443 33357887 4
Q ss_pred EEEecCCcEEEEeCCC
Q 001176 1030 YAGFCDGAIGVFDAET 1045 (1132)
Q Consensus 1030 as~~~dg~i~vwd~~~ 1045 (1132)
++....+.+.+.+-+.
T Consensus 250 V~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 250 VGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEETTEEEEEECSST
T ss_pred EEcCCCCEEEEECCCC
Confidence 5555566666655543
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.57 E-value=0.00065 Score=82.07 Aligned_cols=232 Identities=8% Similarity=0.006 Sum_probs=134.0
Q ss_pred CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC----CeEEEEecCCCCCeEEEE
Q 001176 426 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA----GRKQYTFEGHEAPVYSVC 501 (1132)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~----~~~~~~~~~h~~~v~~i~ 501 (1132)
.+.|+..++.+..... +......+..++|.+.+.. ++++-...+.|+.+++.. ......+.........|+
T Consensus 385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 3567778877654332 1122345678999987763 344445567899999875 222222211222345677
Q ss_pred eeccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec
Q 001176 502 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 581 (1132)
Q Consensus 502 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1132)
+.+.. +.++++-...+.|.++++........+.........+++.|.+.+|+.... ...+.|..+++.... ...+.
T Consensus 460 vD~~~-g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~--~~~~~I~~~~~dG~~-~~~l~ 535 (699)
T 1n7d_A 460 VDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVD-IYSLV 535 (699)
T ss_dssp CCCSS-SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC--SSSCCEEBCCSSSCC-CCEES
T ss_pred EEeeC-CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc--CCCCeEEEEeCCCCC-eeEEE
Confidence 75433 356666667788999998765444333333345678899997666665432 113678887765322 22222
Q ss_pred cccCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001176 582 GFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 660 (1132)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 660 (1132)
...-...+.++|+|++..|+.+. ..+.|..+++........+...........+++..+ .++++....+.|..++..+
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 11112456799999877666654 667899999975444433332222223456666544 4455555678999999887
Q ss_pred cceeeeec
Q 001176 661 GVRLLRML 668 (1132)
Q Consensus 661 ~~~~~~~~ 668 (1132)
+ +..+.+
T Consensus 615 G-~~~~~i 621 (699)
T 1n7d_A 615 G-SDVNLL 621 (699)
T ss_dssp E-EEEECC
T ss_pred C-CceEEe
Confidence 7 444444
No 302
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=97.57 E-value=0.00014 Score=67.77 Aligned_cols=96 Identities=14% Similarity=0.288 Sum_probs=78.5
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chhH
Q 001176 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1132)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1132)
++.. ++|+|+.|.||||+.+|+.++|..||++.-..+...+.+++++|+.+..+.++.+++....++. ++.+
T Consensus 48 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s 126 (156)
T 2nxp_A 48 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS 126 (156)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHH
Confidence 4455 9999999999999999999999999998877777778899999999999999988888877766 3666
Q ss_pred HHHHHHHHHhhcccCcccccccCCCCCcchHHHHHHHHHH
Q 001176 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSL 179 (1132)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~ 179 (1132)
-..|+..|++.= ..-|..+|++.+
T Consensus 127 ~~lL~~fL~~~~----------------~~~ll~Iin~~i 150 (156)
T 2nxp_A 127 YQLLKRHLQEKQ----------------NNQIWNIVQEHL 150 (156)
T ss_dssp HHHHHHHHTTST----------------TCHHHHHHHHTC
T ss_pred HHHHHHHHHHcC----------------ChHHHHHHHHhe
Confidence 678888887731 226777887754
No 303
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.55 E-value=0.42 Score=60.68 Aligned_cols=598 Identities=11% Similarity=0.102 Sum_probs=283.8
Q ss_pred cccceEEeecCCCCeeEE---EE-ccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcC
Q 001176 332 LTKTVVRTLNQGSNVMSM---DF-HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 407 (1132)
Q Consensus 332 ~~~~~~~~l~h~~~V~~~---~~-spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 407 (1132)
++.....+++....|+.. .| +|+.+.++++. ...+.||.+...+......+. --+.
T Consensus 19 m~~~Y~~t~~~pT~V~~av~g~F~~~~~~~Lvvak--~~~Lel~~~~~~~L~~v~~~~------------------l~G~ 78 (1158)
T 3ei3_A 19 MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAK--NTRLEIYVVTAEGLRPVKEVG------------------MYGK 78 (1158)
T ss_dssp CCCEEEEEEECCCSCCEEEEECSSCSSCCEEEEEE--TTEEEEEEEETTEEEEEEEEE------------------CSSC
T ss_pred ccEEEEEEeeCCChhhEEEEEEcCCCCccEEEEec--CCEEEEEEEcccceEEEEEEE------------------cccE
Confidence 444445566655566544 33 34555544433 368999998765432211111 2345
Q ss_pred eEEEEE-cCC---CCeEEEEeCCCeEEEEEecCCCc-eeee-eee---ecccC----CEEEEEEecCCCcEEEEEEcCCC
Q 001176 408 VNRCVW-GPD---GLMLGVAFSKHIVHLYTYNPTGE-LRQH-LEI---DAHVG----GVNDIAFAHPNKQLCIVTCGDDK 474 (1132)
Q Consensus 408 V~~v~~-spd---g~~las~~~dg~i~iwd~~~~~~-~~~~-~~l---~~h~~----~v~~v~~s~d~~~~~l~s~~~dg 474 (1132)
|.+++- -+. .++|+.++.++.+.+..++.... .... ... ....+ +-..++..|.|+ .++....++
T Consensus 79 I~~l~~~r~~g~~~D~L~v~td~~~~~il~~d~~~~~~~~~t~~~~~~~~~~~r~~~~g~~l~vDP~gR--~~~l~~~e~ 156 (1158)
T 3ei3_A 79 IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECR--MIGLRLYDG 156 (1158)
T ss_dssp EEEEEEECCTTCSSCEEEEEETTCEEEEEEEEC-CCCCEEEEEEEEECCCSSCCBCTTCCEEEECTTSS--EEEEECBTT
T ss_pred EEEEEEEcCCCCCceEEEEEeCCceEEEEEEcCCCCceeEEEEeccccccCccccCCCCCEEEEcCCCC--EEEEEeccC
Confidence 666653 333 36999999999887755543211 1110 011 10011 123678899998 777787889
Q ss_pred cEEEEECCCC-e--EEEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEcCCCCceEEe-cCC----CCeEEE
Q 001176 475 MIKVWDVVAG-R--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDY-DAP----GNWCTM 543 (1132)
Q Consensus 475 ~v~vwd~~~~-~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~-~~~----~~~v~~ 543 (1132)
.+.++-+... . ....+.-....|.+++|-...+...++.-..|. .+..|.++-+...... ... ......
T Consensus 157 ~~~v~pl~~~~~~l~~~~~~l~~~~v~d~~fL~g~~~P~~A~Ly~d~~~~~l~~y~ldl~~~~~~~~~w~~~~l~~~a~~ 236 (1158)
T 3ei3_A 157 LFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASM 236 (1158)
T ss_dssp EEEEEECCTTCTTCCCEEEECSCCCEEEEEECSSCSSCEEEEEEEETTEEEEEEEEEETTTTEEEECSSCCEEECTTCCE
T ss_pred EEEEEEecCCcccccccccccccceEEEEEEecCCCCcEEEEEEECCCCCEEEEEEEEcCCCeeeecccccccCCCCCCE
Confidence 9988877531 1 112222234567888875443345565554433 3555655443321111 000 001111
Q ss_pred EEEcC--CCCEEEEEecCCCCCCeEEEEeCCCCceeeeeccccCCceEEEEE-eCCCCEEEEEEcCCeEEEEECCCC-e-
Q 001176 544 MAYSA--DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-DTTRNRFLAAGDEFQIKFWDMDNM-N- 618 (1132)
Q Consensus 544 ~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~-~- 618 (1132)
+.--| -|-.|+.| ...|...|... .............+.+.+. ..++.+++.+.++|.++...+... .
T Consensus 237 LipVP~~~gGvlv~g------~n~i~y~~~~~-~~~~~~p~~~~~~i~~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~~~ 309 (1158)
T 3ei3_A 237 VIAVPEPFGGAIIIG------QESITYHNGDK-YLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQM 309 (1158)
T ss_dssp EEECCTTTCCEEEEC------SSCEEEEETTE-EEEECCGGGGGSCEEEEEECSTTSSEEEEEETTCEEEEEEEEEEC--
T ss_pred EEECCCCCceEEEEE------CCEEEEEcCCC-ceEEeccccCCceEEEEEEEecCCCEEEEEeCCCCEEEEEEEEcCCc
Confidence 22222 24455544 23355555332 1111111111113433332 335567888889999887655321 1
Q ss_pred ----eEEEEeCC--CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCcce----eeeeccccccccccCCCCCCCCCcc
Q 001176 619 ----MLTTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVR----LLRMLEGRAMDKNRCPSEPISSKPL 688 (1132)
Q Consensus 619 ----~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1132)
.+..+... +......++++-.+| +|+.|+..|.=.+|.+..... .+..+.
T Consensus 310 ~~~~~V~~l~i~~~~~~~~~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------------- 369 (1158)
T 3ei3_A 310 DGTVTLKDLRVELLGETSIAECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------------- 369 (1158)
T ss_dssp ---CEEEEEEEEEEEECSCCSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEE-------------------
T ss_pred cCceeEEEEEEEEcCCccCccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEe-------------------
Confidence 22222211 112233677776655 788899988877777754311 000000
Q ss_pred cccccCCCccccccccCCCCCCCCCCCCcccCccCcCCcccccccccccccc---cCceeeeecCCCCCCCcceEEecCC
Q 001176 689 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED---VDKIKSWRIPDISDPSQIKALRLPD 765 (1132)
Q Consensus 689 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~w~~~~~~~~~~~~~~~~~~ 765 (1132)
.+...|+...+ . ..+.......+.+++++ +|.+++..-.- .........+++
T Consensus 370 ~~~N~~PI~D~--------------------~---v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi--~~~~~~~~~l~g 424 (1158)
T 3ei3_A 370 TFTNLGPIVDM--------------------C---VVDLERQGQGQLVTCSGAFKEGSLRIIRNGI--GIHEHASIDLPG 424 (1158)
T ss_dssp EECCCCSEEEE--------------------E---EECTTSSSCCEEEEEECCGGGCEEEEEEESB--CEEEEEEECCCS
T ss_pred eecCcCCceeE--------------------E---EEccCCCCCCeEEEEECcCCCCeEEEEecCC--CEEEEEeecCCC
Confidence 00000000000 0 00000000112222222 26666665331 111112222222
Q ss_pred cccccceEEEEEe---cCCceEEeecccceeEEEeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeE
Q 001176 766 SIAASKVVRLIYT---NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 842 (1132)
Q Consensus 766 ~~~~~~i~~~~~s---~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~ 842 (1132)
...+..+... ....+|+.+..+.+ .|+.+.... +-.....+.......+.+
T Consensus 425 ---v~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e~----------------------veev~~~gf~~~~~TL~~ 478 (1158)
T 3ei3_A 425 ---IKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGEE----------------------VEETELMGFVDDQQTFFC 478 (1158)
T ss_dssp ---CCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETTE----------------------EEEECCTTCCSSSCEEEE
T ss_pred ---ccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCCc----------------------ccccccccccCCCCcEEE
Confidence 1233333322 12345555555544 344332100 000001110000122222
Q ss_pred EEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCC-CCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceee--eeecc
Q 001176 843 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--TKLKG 919 (1132)
Q Consensus 843 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~--~~l~~ 919 (1132)
-.+ .+..++-.....|++.+......+..+.... ..|.+.+... ..++.++ ++.+.++++..+++. ....
T Consensus 479 ~~l--~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~---~~vvva~-g~~l~~fel~~~~L~~~~~~~- 551 (1158)
T 3ei3_A 479 GNV--AHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNS---SQVVVAV-GRALYYLQIHPQELRQISHTE- 551 (1158)
T ss_dssp EEE--TTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECS---SEEEEEE-TTEEEEEEEETTEEEEEEEEE-
T ss_pred EEc--CCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC---CEEEEEE-CCEEEEEEeeCCceeeecccC-
Confidence 222 2346666667788999987766777776544 3577777653 3566665 678888888765422 2222
Q ss_pred ccCCeeEEEEcCC------CCEEEEEcC-CCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEE-eC
Q 001176 920 HQNRITGLAFSPT------LNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HE 991 (1132)
Q Consensus 920 h~~~V~~l~~spd------g~~l~s~~~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d 991 (1132)
-...|.|+++.|. ++++|.|.. |++|+|+++.+.+......+ .+.. .+..+.-+.+ ....+|.++ .|
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L---~~~~-~p~si~l~~~-~~~~~L~igl~d 626 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML---GGEI-IPRSILMTTF-ESSHYLLCALGD 626 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC---CSSC-CEEEEEEEEE-TTEEEEEEEETT
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC---CCCC-CCcEEEEEEe-CCCcEEEEEeCC
Confidence 3567999999763 368898886 99999999987554332222 1111 1122333344 233456665 67
Q ss_pred CeEEEEeC---CCCceee--cCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001176 992 SQISVYDS---KLECSRS--WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1044 (1132)
Q Consensus 992 ~~v~vwd~---~~~~~~~--~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~ 1044 (1132)
|.+.-+.+ ++..... ...+ ..++.=..|...|..-+.+..+.-..++...
T Consensus 627 G~l~~~~~d~~tg~l~d~r~~~LG---~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~ 681 (1158)
T 3ei3_A 627 GALFYFGLNIETGLLSDRKKVTLG---TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN 681 (1158)
T ss_dssp SEEEEEEECTTTCCEEEEEEEECC---SSCCEEEEEESSSCEEEEEESSSCEEEEESS
T ss_pred CeEEEEEEcCCCCccccceeEEcC---CCceEEEEEeeCCceeEEEECCCCEEEEEcC
Confidence 87655544 3322211 1111 3455555555445433333335555555443
No 304
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=97.54 E-value=6.6e-05 Score=68.05 Aligned_cols=96 Identities=14% Similarity=0.216 Sum_probs=76.7
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chhH
Q 001176 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1132)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1132)
++.+ ++|+|+.|.||||+.+|..++|..||.+.-..+... .+.+++|+.+..+.++.+++....++. ++.+
T Consensus 29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s 106 (138)
T 2j4b_A 29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA 106 (138)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 4555 999999999999999999999999999887777777 999999999999999888877766654 4667
Q ss_pred HHHHHHHHHhhcccCcccccccCCCCCcchHHHHHHHHHHH
Q 001176 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180 (1132)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~ 180 (1132)
-..|+..|++.= ..-|..+|++.+.
T Consensus 107 ~~lL~~fL~~~~----------------~~~ll~Iin~~i~ 131 (138)
T 2j4b_A 107 FDLLINFLEERN----------------LTYILKILNQHLD 131 (138)
T ss_dssp HHHHHHHHHHTT----------------CHHHHHHHHHHEE
T ss_pred HHHHHHHHHHCC----------------ChHHHHHHHHhee
Confidence 788888887742 1267778877654
No 305
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=97.53 E-value=5.6e-05 Score=60.78 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=32.8
Q ss_pred CCcchHHHHHHHHHhhhhccHHHHHHHHHHHcCCC
Q 001176 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1132)
Q Consensus 1 ~~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1132)
|+....||+.||..||.|.||..||.+|++||+|.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999983
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.49 E-value=0.13 Score=53.36 Aligned_cols=234 Identities=16% Similarity=0.157 Sum_probs=147.4
Q ss_pred eEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc-ceeeeeecc
Q 001176 841 ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVKTKLKG 919 (1132)
Q Consensus 841 ~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~ 919 (1132)
-+.-++|..+.+|.-...++.+||+++.+.++.+.-. ..|.-=.|-. .+.|+..+. ..|+-|++.. ..+.+.++-
T Consensus 70 dsAIMnP~~~ViALrag~~LQiFnletK~klks~~~~-e~VvfWkWis--~~~L~lVT~-taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 70 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVTD-NAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECS-SCEEEEEECS--SSEEEEEES-SEEEEEESSTTCCCEEEEEC
T ss_pred ceeeeCCCccEEEEecCCeEEEechHHhhhhcceecC-CccEEEEecC--CCeEEEEcC-CcEEEEcccCCCCCceeeec
Confidence 3556788888888888889999999999888887743 4666666654 356665554 4799999974 345555655
Q ss_pred cc----CCeeEEEEcCCCCEEEEEcC-------CCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCC-----
Q 001176 920 HQ----NRITGLAFSPTLNALVSSGA-------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ----- 983 (1132)
Q Consensus 920 h~----~~V~~l~~spdg~~l~s~~~-------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg----- 983 (1132)
|. ..|..-..+++.++++..|- .|.+.+|..+.+. -+..+||.. .-..+-.+|
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~ 214 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEES 214 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSEE-----EEEEECCTTCSSCE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc------cceeeeeee-----eeEEEecCCCCCCc
Confidence 43 45777788999999886552 3678899887643 344455431 112222232
Q ss_pred cEEEEEe----CCeEEEEeC-CC---C------ceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCccee
Q 001176 984 THLLVVH----ESQISVYDS-KL---E------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1049 (1132)
Q Consensus 984 ~~l~~~~----d~~v~vwd~-~~---~------~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~ 1049 (1132)
+.++.+. .+.+++-++ .. . ....+.+.++-.+---+|..|+.-..++.-+.-|.|++||+++|.++
T Consensus 215 ~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 215 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 2333332 267888888 21 1 11112222222444557888888889999999999999999999998
Q ss_pred cccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCCCc
Q 001176 1050 CRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1101 (1132)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~ 1101 (1132)
.+-..+ . ..+...+.....+. ++.-.+.|.|.--.+....
T Consensus 295 ~~nrIS---------~--d~iF~ta~~~~~~G-i~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 295 YMNRIS---------G--ETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEECC---------S--SCEEEEEEEGGGTE-EEEEETTCEEEEEEECTTT
T ss_pred EEeccC---------C--CceEEecccCCCCc-EEEEcCCCEEEEEEECccc
Confidence 754322 2 23333333332333 4444588887766665544
No 307
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.48 E-value=0.026 Score=59.90 Aligned_cols=197 Identities=11% Similarity=0.189 Sum_probs=125.6
Q ss_pred CCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecC----CCc--EEEEEEcC--CCcEEEEEC--CCCe
Q 001176 416 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP----NKQ--LCIVTCGD--DKMIKVWDV--VAGR 485 (1132)
Q Consensus 416 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d----~~~--~~l~s~~~--dg~v~vwd~--~~~~ 485 (1132)
...+++....++-+.+||+ .|+.+.. +.. +.++.+..-|+ |+. +.+++.-. +++|.+|++ .++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~---~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHS---YNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEE---ECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEE---ccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 3445666667788999999 6666552 322 56677766652 222 23455555 689999976 3443
Q ss_pred EEEEecC------CC-CCeEEEEe--eccCCccEEEEEecCCeEEEEEcCCC-------CceEEecCCCCeEEEEEEcCC
Q 001176 486 KQYTFEG------HE-APVYSVCP--HHKESIQFIFSTAIDGKIKAWLYDYL-------GSRVDYDAPGNWCTMMAYSAD 549 (1132)
Q Consensus 486 ~~~~~~~------h~-~~v~~i~~--~~~~~~~~l~s~s~dg~i~~wd~~~~-------~~~~~~~~~~~~v~~~~~s~~ 549 (1132)
+..+.. .. ..+..+|+ ++.....+++....+|.+..|++... +.+..+.. .+.+..++..+.
T Consensus 113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~ 190 (355)
T 3amr_A 113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE 190 (355)
T ss_dssp -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence 555522 11 56677887 44433347888899999999998432 22334443 457888888888
Q ss_pred CCEEEEEecCCCCCCeEEEEeCC-----CCceeeeec-cccCCceEEEEE--eCCCC-EEEEEE-cCCeEEEEECC-CCe
Q 001176 550 GTRLFSCGTSKEGESHLVEWNES-----EGAIKRTYS-GFRKRSLGVVQF--DTTRN-RFLAAG-DEFQIKFWDMD-NMN 618 (1132)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~~wd~~-----~~~~~~~~~-~~~~~~v~~~~~--~~~~~-~l~~~~-~dg~i~iwd~~-~~~ 618 (1132)
..+|+.+-. +.-|..++.+ +++.+..+. ++-...+..+++ .++++ +|++.+ .+..+.+||.. +.+
T Consensus 191 ~g~Lyv~eE----d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~ 266 (355)
T 3amr_A 191 YGRLYIAEE----DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNK 266 (355)
T ss_dssp TTEEEEEET----TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred CCeEEEecc----cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCc
Confidence 888888853 4447777855 345555543 222235777877 45555 677766 67899999996 666
Q ss_pred eEEEEe
Q 001176 619 MLTTVD 624 (1132)
Q Consensus 619 ~~~~~~ 624 (1132)
.+..+.
T Consensus 267 ~vg~f~ 272 (355)
T 3amr_A 267 YVADFR 272 (355)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666665
No 308
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.46 E-value=0.14 Score=53.12 Aligned_cols=258 Identities=9% Similarity=0.102 Sum_probs=153.1
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCC
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 642 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1132)
..+|.+.|+..+..+.+..-. ..+.-.+|..+.++.-. ...+.++|+++.+.+....... .|.--.|-.+ +
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~----AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis~-~ 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 118 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CEEEEEECSS-S
T ss_pred CCEEEEEECCCCCCccccccc----cceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC---ccEEEEecCC-C
Confidence 446889999876654332221 22355789888777654 7899999999999998887653 4555555444 3
Q ss_pred EEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCcc
Q 001176 643 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 722 (1132)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1132)
.|+..+. ..|+-|++.......+.+..|..-
T Consensus 119 ~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L------------------------------------------------ 149 (365)
T 2xzh_A 119 TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 149 (365)
T ss_dssp EEEEEES-SEEEEEESSTTCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEcC-CcEEEEcccCCCCCceeeecchhc------------------------------------------------
Confidence 5555554 489999987643444444443211
Q ss_pred CcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecc-------cceeEE
Q 001176 723 GTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-------NAVHKL 795 (1132)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-------dg~i~v 795 (1132)
....|.....+++.++++..+- .|.+.+
T Consensus 150 ---------------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 184 (365)
T 2xzh_A 150 ---------------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 184 (365)
T ss_dssp ---------------------------------------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------------------------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEE
Confidence 1234555566666666544332 256666
Q ss_pred EeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEE-EEeeCCC-----EEEEee----CCeEEEEEC
Q 001176 796 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI-ALSKNDS-----YVMSAS----GGKVSLFNM 865 (1132)
Q Consensus 796 w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~-~~s~dg~-----~la~~s----dg~i~vwd~ 865 (1132)
|..+.... ..+.+ | ..+. .+-.+|. +++.+. .++++|.++
T Consensus 185 YS~er~~s------------------------Q~ieG--h----aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi 234 (365)
T 2xzh_A 185 YSVDRKVS------------------------QPIEG--H----AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEV 234 (365)
T ss_dssp EETTTTEE------------------------EEECC--S----EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEEC
T ss_pred Eeeccccc------------------------ceeee--e----eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEc
Confidence 65542111 11212 2 1111 1111221 233332 268999998
Q ss_pred CCC---e------EEEEeeC---CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCC
Q 001176 866 MTF---K------VMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 933 (1132)
Q Consensus 866 ~~~---~------~~~~~~~---~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 933 (1132)
... . ....+-. ..+-..++..++ .-.++..-+.-|.|++||+.++.++..-+--.+.|..-+...+.
T Consensus 235 ~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~ 313 (365)
T 2xzh_A 235 GTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT 313 (365)
T ss_dssp SSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGG
T ss_pred CCCCCCCCCcccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCC
Confidence 542 1 1111111 234467888888 66788889999999999999999887766556666555554444
Q ss_pred CEEEEEcCCCcEEEEECCCcc
Q 001176 934 NALVSSGADAQLCMWSIDKWE 954 (1132)
Q Consensus 934 ~~l~s~~~D~~i~iwd~~~~~ 954 (1132)
.=++.....|.|.--.++...
T Consensus 314 ~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 314 AGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp TEEEEEETTCEEEEEEECTTT
T ss_pred CcEEEEcCCCEEEEEEECccc
Confidence 456666678887777776644
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.40 E-value=0.22 Score=53.86 Aligned_cols=259 Identities=9% Similarity=0.102 Sum_probs=156.5
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCC
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 642 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1132)
..+|.+.|+..+..+..-.-. ..+.-.+|..+.++.-. ...+.|+|+++...+....... .|.--.|-.+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~~- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEETT-
T ss_pred CCeEEEEECCCCCcceecccc----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCCC-
Confidence 457999999886654332221 22355789888777654 7899999999999998887653 45556665443
Q ss_pred EEEEEeCCCcEEEEEcCCcceeeeeccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCCCcccCcc
Q 001176 643 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 722 (1132)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1132)
.|+..+ +..|+-|++.......+.+..|..-
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L------------------------------------------------ 148 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchhc------------------------------------------------
Confidence 455554 4489999986543444444433211
Q ss_pred CcCCcccccccccccccccCceeeeecCCCCCCCcceEEecCCcccccceEEEEEecCCceEEeecc-------cceeEE
Q 001176 723 GTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-------NAVHKL 795 (1132)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-------dg~i~v 795 (1132)
....|.....+++.++++..+- .|.+.+
T Consensus 149 ---------------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 183 (494)
T 1bpo_A 149 ---------------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 183 (494)
T ss_dssp ---------------------------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEE
Confidence 1234555666666666554332 366677
Q ss_pred EeeccccCCCCCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCC-----CEEEEee----CCeEEEEECC
Q 001176 796 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND-----SYVMSAS----GGKVSLFNMM 866 (1132)
Q Consensus 796 w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg-----~~la~~s----dg~i~vwd~~ 866 (1132)
|..+.... ..+.| | .... ..+-.+| ..++.+. .++++|.++.
T Consensus 184 YS~er~~s------------------------Q~ieG--h-aa~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~ 234 (494)
T 1bpo_A 184 YSVDRKVS------------------------QPIEG--H-AASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG 234 (494)
T ss_dssp EESTTCCE------------------------EEECC--S-EEEE--EEEECTTCSSEEEEEEEEECSTTCCEEEEEECS
T ss_pred eecccccc------------------------chhee--e-eeee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcC
Confidence 76543111 11222 3 1111 1111122 1333333 3789999985
Q ss_pred CC--------e-EEEEeeC---CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeeccccCCeeEEEEcCCCC
Q 001176 867 TF--------K-VMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 934 (1132)
Q Consensus 867 ~~--------~-~~~~~~~---~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 934 (1132)
.. + ....+-. ..+-..++..++ .-.++..-+.-|.|++||+.++.++..-+--.+.|..-+......
T Consensus 235 ~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~ 313 (494)
T 1bpo_A 235 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATA 313 (494)
T ss_dssp CCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTT
T ss_pred CCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCC
Confidence 42 1 1111111 234467888998 667888899999999999999998877665566666555555555
Q ss_pred EEEEEcCCCcEEEEECCCcc
Q 001176 935 ALVSSGADAQLCMWSIDKWE 954 (1132)
Q Consensus 935 ~l~s~~~D~~i~iwd~~~~~ 954 (1132)
=++.....|.|.--.++...
T Consensus 314 Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 314 GIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEEETTCEEEEEEECTTT
T ss_pred cEEEEccCceEEEEEEcccc
Confidence 56666688888777776654
No 310
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=97.39 E-value=0.00012 Score=67.03 Aligned_cols=101 Identities=20% Similarity=0.273 Sum_probs=79.1
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chhH
Q 001176 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1132)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1132)
++.. ++|+||.|.||||+.+| .++|..||.+.-..+...+.+.+++|+.+..+.++.+++....++. ++.+
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s 108 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 108 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 5555 99999999999999999 9999999998777776667889999999999998888887776655 4666
Q ss_pred HHHHHHHHHhhcccCcccccccCCCCCcchHHHHHHHHHHHHH
Q 001176 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQ 182 (1132)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q 182 (1132)
-..|+..|++.-. .-.+-|..+|++.+..+
T Consensus 109 ~~lL~~fL~~~~~-------------~gg~~ll~Iin~~i~i~ 138 (148)
T 2j49_A 109 LNLLLYFLNENES-------------IGGSLIISVINQHLDPN 138 (148)
T ss_dssp HHHHHHHHHHTGG-------------GTHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHcCc-------------ccHHHHHHHHHHheeEe
Confidence 7788888876322 11336888888875543
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.38 E-value=0.059 Score=58.88 Aligned_cols=228 Identities=11% Similarity=0.072 Sum_probs=125.5
Q ss_pred CCeeEEEEeeCCCEEEEeeCCeEEEEECCCCe-EEEEee---CCCCCeEEEEEeCC---CCCeEEEEeC---C----CcE
Q 001176 838 ESAACIALSKNDSYVMSASGGKVSLFNMMTFK-VMTMFM---SPPPAATFLAFHPQ---DNNIIAIGME---D----SSV 903 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~-~~~~~~---~~~~~i~~l~~sp~---~~~~lasg~~---d----g~v 903 (1132)
.....++|.|||+++++-.+|.|+++|. +++ .+..+. ........|+|+|+ ++.+.++-+. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3468899999998666655899999974 454 222221 12345789999993 3555554432 3 567
Q ss_pred EEEEcccc-------eee-eeecc-ccCCeeEEEEcCCCCEEEEEcCC-------------CcEEEEECCCccccc----
Q 001176 904 QIYNVRVD-------EVK-TKLKG-HQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWEKLK---- 957 (1132)
Q Consensus 904 ~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~spdg~~l~s~~~D-------------~~i~iwd~~~~~~~~---- 957 (1132)
..|+.... +.+ ..+.. .......|+|.|||.++++.+.. +.|.-++.+.. ...
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence 77776543 111 11221 11124679999999988875532 34444444321 000
Q ss_pred --ceeeeCCCCCCCCCCCceeEEECC-CCcEEEEE--eCC--eEEEEeCCCC-----------------ceeecCCCCCC
Q 001176 958 --SRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV--HES--QISVYDSKLE-----------------CSRSWSPKDAL 1013 (1132)
Q Consensus 958 --~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~--~d~--~v~vwd~~~~-----------------~~~~~~~~~~h 1013 (1132)
.... ..++ .....++|+| +|.++++- .+. .|.+...... .+..+. ..
T Consensus 187 ~~~~i~--a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~- 257 (354)
T 3a9g_A 187 PNSPIW--SYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG--SE- 257 (354)
T ss_dssp TTCCEE--EECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT--TC-
T ss_pred CCCcEE--EEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC--CC-
Confidence 0000 0111 2457899999 67766652 222 2333222110 011110 11
Q ss_pred CCCeEEEEEc-------cCCCEEEEEecCCcEEEEeCCCc-cee--cccCCCccccccccCCCCCCcEEEEeCCCCCCeE
Q 001176 1014 PAPISSAIYS-------CDGLLVYAGFCDGAIGVFDAETL-RFR--CRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1083 (1132)
Q Consensus 1014 ~~~i~~i~~s-------~dg~~las~~~dg~i~vwd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 1083 (1132)
......++|. .+|.++++....+.|...+++.. +.. ..+. .+....+..+++.| |+.+.
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~----------~~~~~rp~~v~~~p-DG~ly 326 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF----------KNVFGRLRDVVIDD-DGGIL 326 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC----------TTTSCCEEEEEECT-TSCEE
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec----------cCCCCCeeEEEECC-CCcEE
Confidence 3457788883 57777777666778888888753 221 1111 12235688999999 67766
Q ss_pred EEEe
Q 001176 1084 ALGM 1087 (1132)
Q Consensus 1084 ~s~~ 1087 (1132)
++..
T Consensus 327 v~~~ 330 (354)
T 3a9g_A 327 ISTS 330 (354)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6654
No 312
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.31 E-value=0.025 Score=61.06 Aligned_cols=207 Identities=12% Similarity=0.080 Sum_probs=117.9
Q ss_pred CeEEEEEcCCCCeEEEEe------------CCCeEEEEEecCCC-ceeeeeeeec-----ccCCEEEEEEec--CCCcEE
Q 001176 407 SVNRCVWGPDGLMLGVAF------------SKHIVHLYTYNPTG-ELRQHLEIDA-----HVGGVNDIAFAH--PNKQLC 466 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~------------~dg~i~iwd~~~~~-~~~~~~~l~~-----h~~~v~~v~~s~--d~~~~~ 466 (1132)
..-.++..|+|..+++++ .+|.|.++|.++.. ..... .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345677788886666652 68999999987432 12221 2332 234567777766 454323
Q ss_pred EEEEcC--CCcEEEEECCCC--e--EEEEecCC-CCCeEEEEeeccCCccEEEEEec-----------------CCeEEE
Q 001176 467 IVTCGD--DKMIKVWDVVAG--R--KQYTFEGH-EAPVYSVCPHHKESIQFIFSTAI-----------------DGKIKA 522 (1132)
Q Consensus 467 l~s~~~--dg~v~vwd~~~~--~--~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~s~-----------------dg~i~~ 522 (1132)
++.-.. +.+|.+|++..+ . .+.++.+. -...+.+.+.++ |.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~--G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP--EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEET--TEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCC--CCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333333 567888876643 2 23344432 245788888764 466666541 244444
Q ss_pred EEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCC-Cce--eeeeccccCCceEEEEEeC-CCC
Q 001176 523 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDT-TRN 598 (1132)
Q Consensus 523 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~ 598 (1132)
+|. ++. ..+...-...+.++|+||++.|+.+.. ..++|+.|++.. ++. .+.+. .......+++.+ +|+
T Consensus 208 ~d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 208 YSP--NDV-RVVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGD 279 (355)
T ss_dssp ECT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCC
T ss_pred EEC--CeE-EEeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCc
Confidence 443 322 222222345688999999999888753 356799999863 332 22332 123567789999 588
Q ss_pred EEEEEEcC-CeEEEEECC--CCeeEEEEe
Q 001176 599 RFLAAGDE-FQIKFWDMD--NMNMLTTVD 624 (1132)
Q Consensus 599 ~l~~~~~d-g~i~iwd~~--~~~~~~~~~ 624 (1132)
+.+++..+ +.|..|+.. .+..+..+.
T Consensus 280 lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 87766533 345555544 244455444
No 313
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.20 E-value=0.05 Score=59.51 Aligned_cols=230 Identities=14% Similarity=0.113 Sum_probs=120.5
Q ss_pred CeeEEEEeeCCCEEEEeeCCeEEEEECCCCeE--EEEee---CCCCCeEEEEEeCC---CCCeEEEEeCC-----CcEEE
Q 001176 839 SAACIALSKNDSYVMSASGGKVSLFNMMTFKV--MTMFM---SPPPAATFLAFHPQ---DNNIIAIGMED-----SSVQI 905 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~sp~---~~~~lasg~~d-----g~v~i 905 (1132)
....++|.|||+++++-.+|.|++++ +++. +..+. ........|+|+|+ ++.+.++-..+ +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 46789999999966665589999998 3432 22221 12346789999993 25555544432 67888
Q ss_pred EEcccce------eeeeec---cccCCeeEEEEcCCCCEEEEEcCC-------------CcEEEEECCCcccccceee--
Q 001176 906 YNVRVDE------VKTKLK---GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWEKLKSRFI-- 961 (1132)
Q Consensus 906 wd~~~~~------~~~~l~---~h~~~V~~l~~spdg~~l~s~~~D-------------~~i~iwd~~~~~~~~~~~~-- 961 (1132)
|+...+. .+..+. +.......|+|.|||.+.++.+.. +.|.-++.+. ........
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~~ 188 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFLG 188 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTTT
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCcccC
Confidence 8876431 112233 111123689999999877775432 4455555443 10000000
Q ss_pred -------eCCCCCCCCCCCceeEEECC-CCcEEEEE-eCCe--------EEEEeCCCC-----------------ceeec
Q 001176 962 -------QAPAGRQSPLVGETKVQFHN-DQTHLLVV-HESQ--------ISVYDSKLE-----------------CSRSW 1007 (1132)
Q Consensus 962 -------~~~~~~~~~~~~v~~~~~s~-dg~~l~~~-~d~~--------v~vwd~~~~-----------------~~~~~ 1007 (1132)
....++ .....++|+| +|.+.++- .... |.+...... ....+
T Consensus 189 ~~~~~~~i~a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 189 RRGARPEVYSLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp CTTSCTTEEEECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCccEEEEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 000011 2356789999 66666652 2222 333222110 00011
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccC-CCccccccccCCCCCCcEEEEeCCCCCCeEEEE
Q 001176 1008 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG-PSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG 1086 (1132)
Q Consensus 1008 ~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 1086 (1132)
.+......++| .+|.++++....+.|...+++......... ....+ .....+..+++.| |+.+.++.
T Consensus 265 ----~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~------~~~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 265 ----PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL------SGFGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp ----TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE------ESSCCEEEEEECT-TSCEEEEE
T ss_pred ----CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec------ccCCCeeEEEECC-CCcEEEEE
Confidence 11234567777 567766666666777777776443110000 00000 1124688999999 66666655
Q ss_pred e
Q 001176 1087 M 1087 (1132)
Q Consensus 1087 ~ 1087 (1132)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.08 E-value=0.056 Score=57.67 Aligned_cols=195 Identities=10% Similarity=-0.036 Sum_probs=98.4
Q ss_pred CCCeEEEEeCC-----CeEEEEEecCCCc--eeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC-----CcEEEEECCC
Q 001176 416 DGLMLGVAFSK-----HIVHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVA 483 (1132)
Q Consensus 416 dg~~las~~~d-----g~i~iwd~~~~~~--~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----g~v~vwd~~~ 483 (1132)
+++.++.|+.+ ..+.+||..+++. ......+.........+. .+++ +++.|+.+ ..+.++|+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDM--IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCE--EEEEcccCCCcccceEEEEcCCC
Confidence 67778888755 3588999887651 221112221111222222 2555 56666643 3688999888
Q ss_pred CeEEE--EecCCCCCeEEEEeeccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001176 484 GRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 556 (1132)
Q Consensus 484 ~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1132)
.+... .+......-..+.+ ++.+++.|+.+ ..+.+||+.+..-...-..........+..-+++.++.+
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 213 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVG 213 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred CeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEe
Confidence 76433 22211111122222 33677777655 457888887654333211111111111112256666676
Q ss_pred ecCCCC-CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCee
Q 001176 557 GTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNM 619 (1132)
Q Consensus 557 ~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 619 (1132)
+.+... ...+.+||+.+.+....-.......-.+++ .-++..++.||.+ ..+.+||+.+.+.
T Consensus 214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT-VLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE-EECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 653322 356999999877644322111110111122 2256666667654 4577888877654
No 315
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.07 E-value=0.066 Score=56.33 Aligned_cols=164 Identities=10% Similarity=0.060 Sum_probs=106.1
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeeccccccccccccc--CCCCcCeEEEEE---cCCCCe
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL--NDAAISVNRCVW---GPDGLM 419 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~---spdg~~ 419 (1132)
--.+++|.+....++++.-..++|..|+...+..... .+. .+. ......+..|.| .|++++
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~-------------~~s~~g~~~~~~sGl~~~~~D~~grL 79 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID-------------GASSNGDGEQQMSGLSLLTHDNSKRL 79 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT-------------TTCCSSCCSEEEEEEEESSSSSCCEE
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC-------------CccccCCCcceeeEEEEeccCCCCcE
Confidence 3457899886665666666889999999976543221 000 000 011224578999 688888
Q ss_pred EEEEe-------------CCCeEEEEEec---CCCceeeeeeeeccc-----------CCEEEEEEecCCCcEEEEEEcC
Q 001176 420 LGVAF-------------SKHIVHLYTYN---PTGELRQHLEIDAHV-----------GGVNDIAFAHPNKQLCIVTCGD 472 (1132)
Q Consensus 420 las~~-------------~dg~i~iwd~~---~~~~~~~~~~l~~h~-----------~~v~~v~~s~d~~~~~l~s~~~ 472 (1132)
+++.. .+..|..||+. +++.+... .|.... ....+++..++|+ ..++++.
T Consensus 80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~ 156 (334)
T 2p9w_A 80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFAL 156 (334)
T ss_dssp EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEE
T ss_pred EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCC
Confidence 77643 26779999999 66654322 232221 2488999999999 7788887
Q ss_pred C-CcEEEEECCCCeEEEEec------CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCC
Q 001176 473 D-KMIKVWDVVAGRKQYTFE------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 528 (1132)
Q Consensus 473 d-g~v~vwd~~~~~~~~~~~------~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 528 (1132)
- +.|...+.. |+.+..+. ......+.|+++|++ ..|++....|.+..+|+...
T Consensus 157 ~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg--~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 157 GMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHS--NKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp SSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTT--TEEEEESSSSSEEEEECSSS
T ss_pred CCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCC--CEEEEEcCCCeEEEEcCCCC
Confidence 7 877777743 44333321 112336789998855 67777766999999998853
No 316
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.01 E-value=0.037 Score=59.89 Aligned_cols=108 Identities=12% Similarity=0.150 Sum_probs=80.8
Q ss_pred EEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCC----CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccccee-----
Q 001176 843 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSP----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV----- 913 (1132)
Q Consensus 843 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~----- 913 (1132)
...+.+|..++.+.++.||.-++......+.+... -..|..+..+| +|++||..+. ..|.|-.+..+..
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~-~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFND-NEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEECS-SEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEecC-CeEEEEEecCccccCccc
Confidence 34567889999998999999998755455555543 23688999999 9999998754 4799988873310
Q ss_pred -------eeeecc------ccCCeeEEEEcCCC---CEEEEEcCCCcEEEEECCC
Q 001176 914 -------KTKLKG------HQNRITGLAFSPTL---NALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 914 -------~~~l~~------h~~~V~~l~~spdg---~~l~s~~~D~~i~iwd~~~ 952 (1132)
...+.- ...+|..+.|+|-+ ..|++-..|++|++||+..
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 111211 24679999999964 6899999999999999986
No 317
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.98 E-value=0.048 Score=59.59 Aligned_cols=229 Identities=12% Similarity=0.013 Sum_probs=117.1
Q ss_pred CeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeee---cccCCEEEEEEecC---CCcEEEEEEcCC-----Cc
Q 001176 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID---AHVGGVNDIAFAHP---NKQLCIVTCGDD-----KM 475 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~---~h~~~v~~v~~s~d---~~~~~l~s~~~d-----g~ 475 (1132)
....++|.|||+++++ ..+|.|.+++ .+. ......+. ........|+|+|+ +.. +.++-... +.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCccE
Confidence 4678999999995555 5679999998 332 22111111 12346789999998 553 33333322 57
Q ss_pred EEEEECCCCe-----EE-EEec---CCCCCeEEEEeeccCCccEEEEEec-------------CCeEEEEEcCCC-----
Q 001176 476 IKVWDVVAGR-----KQ-YTFE---GHEAPVYSVCPHHKESIQFIFSTAI-------------DGKIKAWLYDYL----- 528 (1132)
Q Consensus 476 v~vwd~~~~~-----~~-~~~~---~h~~~v~~i~~~~~~~~~~l~s~s~-------------dg~i~~wd~~~~----- 528 (1132)
|..++...+. .+ ..+. +.......++|.|+ |.+.++.+. .|.|.-++.+..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD--GMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT--SCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC--CCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 8888876432 11 2233 11122357888764 456555432 245555555420
Q ss_pred -------CceEEecCCCCeEEEEEEcC-CCCEEEEEecCCCC-----CCeEEEEeCCC----------------Cceeee
Q 001176 529 -------GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEG-----ESHLVEWNESE----------------GAIKRT 579 (1132)
Q Consensus 529 -------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-----~~~i~~wd~~~----------------~~~~~~ 579 (1132)
.....+.........++|+| ++++.++-.. .+. ...|.+..... ..++..
T Consensus 185 pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 01111111123456789999 5665544321 111 11243332211 011222
Q ss_pred eccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCee------EEEEeCCCCCCCcceEEEcCCCCEEEEEe
Q 001176 580 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM------LTTVDADGGLPASPRLRFNKEGSLLAVTT 648 (1132)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1132)
+..+ . ....++| .+|..+++.-..+.|...++..... ...+-. ....+..+++.|||.++++..
T Consensus 264 ~~~~-~-ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 WPQG-F-PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CTTC-C-CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred cCCC-C-CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 2111 1 3456777 3565555544667777777654321 112211 123678999999997766654
No 318
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.97 E-value=0.24 Score=53.93 Aligned_cols=231 Identities=16% Similarity=0.070 Sum_probs=119.3
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC---CCe
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD---GLM 419 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~~ 419 (1132)
-...++++|.|||+ ++++- .+|.|.+++ .+++ .. +. ++ . +..........|+|+|+ +..
T Consensus 28 l~~P~~ia~~pdG~-l~V~e-~~g~I~~~d-~~G~-~~---~~--~~-------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTE-RPGRLVLIS-PSGK-KL---VA--SF-------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEE-TTTEEEEEC-SSCE-EE---EE--EC-------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEEe-CCCEEEEEe-CCCc-eE---ee--cc-------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 35789999999997 55554 459999887 3443 11 10 00 0 11223456889999998 454
Q ss_pred EEEEeC----C----CeEEEEEecCCC-cee---ee-eeee-cccCCEEEEEEecCCCcEEEEEEcC-------------
Q 001176 420 LGVAFS----K----HIVHLYTYNPTG-ELR---QH-LEID-AHVGGVNDIAFAHPNKQLCIVTCGD------------- 472 (1132)
Q Consensus 420 las~~~----d----g~i~iwd~~~~~-~~~---~~-~~l~-~h~~~v~~v~~s~d~~~~~l~s~~~------------- 472 (1132)
|.++.. + ..|..|+...+. .+. .. ..+. +.......++|.|||. +.++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 544432 3 568888876541 111 11 1122 1111346799999997 4554332
Q ss_pred CCcEEEEECCCCe----------EEEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEcCCCC----------
Q 001176 473 DKMIKVWDVVAGR----------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLG---------- 529 (1132)
Q Consensus 473 dg~v~vwd~~~~~----------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~---------- 529 (1132)
.|.|.-.+.. |+ .+.. .++. ....++|++.. +.++++-...+ .|.+. ..+.
T Consensus 168 ~G~I~ri~~d-G~~p~~npf~~~~i~a-~G~r-np~Gla~d~~~-g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~ 241 (354)
T 3a9g_A 168 AGKILRVDEE-GRPPADNPFPNSPIWS-YGHR-NPQGIDWHRAS-GVMVATEHGPVGHDEVNII--LKGGNYGWPLATGK 241 (354)
T ss_dssp SSEEEEECTT-SCCCTTSSSTTCCEEE-ECCS-CCCEEEECTTT-CCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSC
T ss_pred CeEEEEEcCC-CCCCCCCCCCCCcEEE-EccC-CcceEEEeCCC-CCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCC
Confidence 1345555533 22 1221 2333 34578887732 24444433222 13222 1111
Q ss_pred --------ceEEecCCCCeEEEEEEc-------CCCCEEEEEecCCCCCCeEEEEeCCCC-cee--eeeccccCCceEEE
Q 001176 530 --------SRVDYDAPGNWCTMMAYS-------ADGTRLFSCGTSKEGESHLVEWNESEG-AIK--RTYSGFRKRSLGVV 591 (1132)
Q Consensus 530 --------~~~~~~~~~~~v~~~~~s-------~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~--~~~~~~~~~~v~~~ 591 (1132)
....+.........++|. .+|+++++.. ..+.|...++... +.. ..+.......+..+
T Consensus 242 ~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~----~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v 317 (354)
T 3a9g_A 242 AGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL----RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDV 317 (354)
T ss_dssp CCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET----TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEE
T ss_pred CCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc----CCCEEEEEEECCCCcccceeeeccCCCCCeeEE
Confidence 112221223456788884 4665555543 3567888887743 322 22221112367889
Q ss_pred EEeCCCCEEEEE
Q 001176 592 QFDTTRNRFLAA 603 (1132)
Q Consensus 592 ~~~~~~~~l~~~ 603 (1132)
++.|||..+++.
T Consensus 318 ~~~pDG~lyv~~ 329 (354)
T 3a9g_A 318 VIDDDGGILIST 329 (354)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCCcEEEEE
Confidence 999998765554
No 319
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.93 E-value=0.16 Score=55.45 Aligned_cols=239 Identities=10% Similarity=0.050 Sum_probs=126.6
Q ss_pred CeeEEEEeeCCC-EEEEeeCCeEEEEECCCCeEEEEee-------CCCCCeEEEEEeCC---CCCeEEEEeC-------C
Q 001176 839 SAACIALSKNDS-YVMSASGGKVSLFNMMTFKVMTMFM-------SPPPAATFLAFHPQ---DNNIIAIGME-------D 900 (1132)
Q Consensus 839 ~v~~~~~s~dg~-~la~~sdg~i~vwd~~~~~~~~~~~-------~~~~~i~~l~~sp~---~~~~lasg~~-------d 900 (1132)
....++|.|||+ ++++-..|.|++++.. ++....+. ........|+|+|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 468999999999 6655558999999854 33221111 12345689999993 3555544332 2
Q ss_pred CcEEEEEcccc-------ee-eeeec-----cccCCeeEEEEcCCCCEEEEEcCC-------------CcEEEEECCCcc
Q 001176 901 SSVQIYNVRVD-------EV-KTKLK-----GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWE 954 (1132)
Q Consensus 901 g~v~iwd~~~~-------~~-~~~l~-----~h~~~V~~l~~spdg~~l~s~~~D-------------~~i~iwd~~~~~ 954 (1132)
..|..|++..+ +. +..+. .|. -..|+|.|||.+.++.+.. |.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 11 11121 122 3579999999877776542 356666655320
Q ss_pred cc----------cceeeeCCCCCCCCCCCceeEEECC-CCcEEEEE--eCCeEEEEeC-CCCce----------------
Q 001176 955 KL----------KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV--HESQISVYDS-KLECS---------------- 1004 (1132)
Q Consensus 955 ~~----------~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~--~d~~v~vwd~-~~~~~---------------- 1004 (1132)
.. ..... ..++ .....++|.| +|.+.++- .++.=.|.-+ .+..-
T Consensus 176 p~~npf~~~~~~~~~i~--a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIW--SYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEE--EECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEE--EEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 00000 0011 3467899999 66666552 2222233322 11100
Q ss_pred --------eecC-CC--CCCCCCeEEEEEcc-------CCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCC
Q 001176 1005 --------RSWS-PK--DALPAPISSAIYSC-------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSN 1066 (1132)
Q Consensus 1005 --------~~~~-~~--~~h~~~i~~i~~s~-------dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1132)
..+. +. ..+......++|.. +|.++++....+.|...+++.++...... .+ ...
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~-----~~~ 321 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---IL-----TDR 321 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ES-----GGG
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cc-----cCC
Confidence 0000 00 01123566778763 57777777677888888887654332210 00 122
Q ss_pred CCCcEEEEeCCCCCCeEEEEe-CCCcEEEEec
Q 001176 1067 TAHPLVIAPHPSEPNQIALGM-SDGAVHVVEP 1097 (1132)
Q Consensus 1067 ~~~v~~~~~~p~~~~~l~s~~-~Dg~i~vW~~ 1097 (1132)
...+..+++.| |+.+.++.. .+| +||++
T Consensus 322 ~~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 322 GQRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CCCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CCceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 35788999999 777666443 344 45555
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.93 E-value=0.082 Score=56.40 Aligned_cols=233 Identities=12% Similarity=0.054 Sum_probs=115.8
Q ss_pred CCCeEEEEeCC----CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC-----CcEEEEECCCCeE
Q 001176 416 DGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAGRK 486 (1132)
Q Consensus 416 dg~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----g~v~vwd~~~~~~ 486 (1132)
++..++.|+.+ ..+..||..+.+ ......+......-..+. -++. +++.|+.+ ..+.+||..+.+.
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W 89 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEER-WHQVAELPSRRCRAGMVY--MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQW 89 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEE--ETTE--EEEESCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCc-EeEcccCCcccccceEEE--ECCE--EEEEeCcCCCccccceEEECCCCCce
Confidence 34455566543 357888887753 222111221111111222 2555 66666644 3688999888764
Q ss_pred EEE--ecCCCCCeEEEEeeccCCccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCe-EEEEEEcCCCCEEEEEec
Q 001176 487 QYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 487 ~~~--~~~h~~~v~~i~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~ 558 (1132)
... +......-..+.+ ++.+++.|+.++ .+.+||+.+..-...-...... -.+++. -+++.++.++.
T Consensus 90 ~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~ 164 (302)
T 2xn4_A 90 TSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGY 164 (302)
T ss_dssp EEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCE
T ss_pred eeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCC
Confidence 332 1111111122222 336777777653 4777887765433321111111 111222 35666666664
Q ss_pred CCCC---CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeeEEEEeCCCCCC
Q 001176 559 SKEG---ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 559 ~~~~---~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
+... ...+.+||+.+.+....-.......-.+++. -++..++.||.+ ..+.+||+.+.+....-.....
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 3322 3458999998775433211111101112222 256666667653 4689999988765543322211
Q ss_pred CcceEEEcCCCCEEEEEeCCC-----cEEEEEcCCc
Q 001176 631 ASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 661 (1132)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~ 661 (1132)
.....+...++.+++.|+.++ .+.+||..+.
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 112222233677777777653 4888888765
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.90 E-value=0.17 Score=53.96 Aligned_cols=234 Identities=6% Similarity=-0.087 Sum_probs=117.6
Q ss_pred eEEEEEcC--CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeCC----CeEE
Q 001176 357 TILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVH 430 (1132)
Q Consensus 357 ~lla~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d----g~i~ 430 (1132)
.+++.|+. ...+.+||..+++...... .+ .....-.++. -+++.++.|+.+ ..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~----------~p-------~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~ 73 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRC----------PF-------EKRRDAACVF--WDNVVYILGGSQLFPIKRMD 73 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCC----------CS-------CCCBSCEEEE--ETTEEEEECCBSSSBCCEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCC----------CC-------cccceeEEEE--ECCEEEEEeCCCCCCcceEE
Confidence 46777765 3578888888765432100 00 0111112222 267778888755 5688
Q ss_pred EEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC------CcEEEEECCCCeEEEE--ecCCCCCeEEEEe
Q 001176 431 LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVAGRKQYT--FEGHEAPVYSVCP 502 (1132)
Q Consensus 431 iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d------g~v~vwd~~~~~~~~~--~~~h~~~v~~i~~ 502 (1132)
+||..+++- .....+.........+. -+++ +++.|+.+ ..+.+||+.+.+-... +......-..+.+
T Consensus 74 ~~d~~~~~W-~~~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 148 (306)
T 3ii7_A 74 CYNVVKDSW-YSKLGPPTPRDSLAACA--AEGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA 148 (306)
T ss_dssp EEETTTTEE-EEEECCSSCCBSCEEEE--ETTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred EEeCCCCeE-EECCCCCccccceeEEE--ECCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE
Confidence 899887642 22212221111122222 2555 66667655 4688999988765432 1111111112221
Q ss_pred eccCCccEEEEEec---------CCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCC-CCCeEEEEeCC
Q 001176 503 HHKESIQFIFSTAI---------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE-GESHLVEWNES 572 (1132)
Q Consensus 503 ~~~~~~~~l~s~s~---------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~i~~wd~~ 572 (1132)
++.+++.|+. -..+.+||+.+..-...-..........+..-+++.++.++.+.. ....+.+||+.
T Consensus 149 ----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 224 (306)
T 3ii7_A 149 ----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK 224 (306)
T ss_dssp ----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETT
T ss_pred ----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCC
Confidence 3366666654 345788888766433321111111111111125666666654221 12458999998
Q ss_pred CCceeee--eccccCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeeEE
Q 001176 573 EGAIKRT--YSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLT 621 (1132)
Q Consensus 573 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 621 (1132)
+.+-... +..... ...++.+ ++..++.||.+ ..+.+||..+.+-..
T Consensus 225 ~~~W~~~~~~p~~r~-~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 225 LNEWKMVSPMPWKGV-TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp TTEEEECCCCSCCBS-CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred CCcEEECCCCCCCcc-ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 7654332 111111 1222222 56677777743 568899998866443
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.87 E-value=0.72 Score=50.00 Aligned_cols=239 Identities=7% Similarity=0.096 Sum_probs=145.2
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCC-CeEEE
Q 001176 410 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQY 488 (1132)
Q Consensus 410 ~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~-~~~~~ 488 (1132)
+.-.+|..+.||.=. ..++.|+|+++.+.++.. . ....|.-=.|-.+.. |+-.+ +..|+-|++.. ..+++
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~---~-~~e~VvfWkWis~~~---l~lVT-~taVyHWsi~~~s~P~k 140 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH---T-MTDDVTFWKWISLNT---VALVT-DNAVYHWSMEGESQPVK 140 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE---E-CSSCCCEEEEEETTE---EEEEC-SSEEEEEESSSSCCCEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcce---e-cCCCceEEEecCCCe---EEEEc-CCeeEEecccCCCCchh
Confidence 345677777776654 678999999997655422 1 234676777766554 44333 56899999874 35666
Q ss_pred EecCCCC--CeEEEEeeccCCccEEEEEe-------cCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCC---CEEEEE
Q 001176 489 TFEGHEA--PVYSVCPHHKESIQFIFSTA-------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG---TRLFSC 556 (1132)
Q Consensus 489 ~~~~h~~--~v~~i~~~~~~~~~~l~s~s-------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~ 556 (1132)
.|..|.. ...-+.+..+.+.++++..+ ..|.+.+|..+.. ....+.+|......+....+. +.+..+
T Consensus 141 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa 219 (494)
T 1bpo_A 141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFA 219 (494)
T ss_dssp EEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEE
T ss_pred heecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEE
Confidence 6665532 23333333444556665443 3477889987743 334455555444333332211 233333
Q ss_pred ecCCCCCCeEEEEeCCCC---c------eeeee-cc-ccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeC
Q 001176 557 GTSKEGESHLVEWNESEG---A------IKRTY-SG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625 (1132)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~---~------~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1132)
.... ..+.+++.++... . .+..+ .. ....-..++..++....++....-|.|++||+.++.++..-..
T Consensus 220 ~r~~-~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI 298 (494)
T 1bpo_A 220 VRGQ-AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (494)
T ss_dssp ECST-TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EecC-CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc
Confidence 3222 2467999988542 1 11111 11 1111345688899889999999999999999999999988775
Q ss_pred CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 001176 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 626 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 661 (1132)
... .|...+-..+..=++.....|.|.--.++..
T Consensus 299 s~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 299 SGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp CSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred cCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 543 5655555555555666668888877777655
No 323
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.86 E-value=0.057 Score=57.64 Aligned_cols=234 Identities=12% Similarity=0.018 Sum_probs=117.4
Q ss_pred CCCeEEEEe-CC-----CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC-----CcEEEEECCCC
Q 001176 416 DGLMLGVAF-SK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAG 484 (1132)
Q Consensus 416 dg~~las~~-~d-----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----g~v~vwd~~~~ 484 (1132)
++..++.|+ .+ ..+.+||..+++- .....+....... .+...++. +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~--~~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEW-SFLPSITRKRRYV--ASVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEE-EECCCCSSCCBSC--EEEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeE-EeCCCCChhhccc--cEEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 32 3588888877532 2111121111111 12223455 66667654 46899998877
Q ss_pred e---EEEE--ecCCCCCeEEEEeeccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001176 485 R---KQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 554 (1132)
Q Consensus 485 ~---~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1132)
+ .... +......-..+.+ ++.+++.|+.+ ..+.+||+.+..-...-..........+..-+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence 6 3222 1111111122222 33677777654 3578888876553332211111111111122666666
Q ss_pred EEecCCC-CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeeEEEEeCCCC
Q 001176 555 SCGTSKE-GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGG 628 (1132)
Q Consensus 555 ~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~ 628 (1132)
.++.+.. ....+.+||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||+.+.+....-.....
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 243 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence 6664322 13568999998776443311111101112222 245666667653 5689999988775544322221
Q ss_pred CCCcceEEEcCCCCEEEEEeCC-----CcEEEEEcCCc
Q 001176 629 LPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 661 (1132)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~ 661 (1132)
.....+..-++++++.|+.+ ..+.+||..+.
T Consensus 244 --r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 244 --RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp --CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred --ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 12222233367777777765 35778887765
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.85 E-value=0.11 Score=55.43 Aligned_cols=232 Identities=7% Similarity=-0.027 Sum_probs=116.7
Q ss_pred CeEEEEeC--CCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC----CcEEEEECCCCeEEEE--
Q 001176 418 LMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYT-- 489 (1132)
Q Consensus 418 ~~las~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d----g~v~vwd~~~~~~~~~-- 489 (1132)
.+++.|+. ...+.+||..+++-. ....+.........+. -++. +++.|+.+ ..+.++|+.+++....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWT-DIRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEE-ECCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEe-cCCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 34555654 356888888875422 1111211111122222 3555 66677654 6788999988765332
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC-
Q 001176 490 FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG- 562 (1132)
Q Consensus 490 ~~~h~~~v~~i~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~- 562 (1132)
+......-..+.+ ++.+++.|+.+ ..+.+||..+..-...-..........+..-+++.++.++.+...
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNV 163 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTT
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCC
Confidence 2111111122222 33677777765 458888887654333211111111111112366666666643322
Q ss_pred ----CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001176 563 ----ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLPASP 633 (1132)
Q Consensus 563 ----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1132)
...+.+||+.+.+....-.......-.+++.. ++..++.||.+ ..+.+||+.+.+-...-..... ...
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~ 240 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK--GVT 240 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC--BSC
T ss_pred cccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC--ccc
Confidence 35689999988754332211111011122222 55666666543 4688999988765443222211 111
Q ss_pred eEEEcCCCCEEEEEeCC-----CcEEEEEcCCc
Q 001176 634 RLRFNKEGSLLAVTTSD-----NGIKILANSDG 661 (1132)
Q Consensus 634 ~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~ 661 (1132)
..+..-++.+++.|+.+ ..+.+||..+.
T Consensus 241 ~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 241 VKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CEEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred eeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 12222267788888754 46788888765
No 325
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.82 E-value=0.57 Score=52.85 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=63.1
Q ss_pred CCeeEEEEeeCCCEEEEeeC-CeEEEEECCCCeE--EEEeeC------CCCCeEEEEEeCC---CCCeEEEEeC------
Q 001176 838 ESAACIALSKNDSYVMSASG-GKVSLFNMMTFKV--MTMFMS------PPPAATFLAFHPQ---DNNIIAIGME------ 899 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~sd-g~i~vwd~~~~~~--~~~~~~------~~~~i~~l~~sp~---~~~~lasg~~------ 899 (1132)
...+.++|.|||+++++-.. +.|++++..+++. +..+.. .......|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 34679999999998887665 4799888655543 222221 1345679999994 4444444332
Q ss_pred ------CCcEEEEEcccc-------eeee-eecc-ccCCeeEEEEcCCCCEEEEEcC
Q 001176 900 ------DSSVQIYNVRVD-------EVKT-KLKG-HQNRITGLAFSPTLNALVSSGA 941 (1132)
Q Consensus 900 ------dg~v~iwd~~~~-------~~~~-~l~~-h~~~V~~l~~spdg~~l~s~~~ 941 (1132)
...|.-|++..+ +.+. .+.. .......|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555655421 1111 1221 1123678999999998888764
No 326
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.76 E-value=0.49 Score=52.87 Aligned_cols=99 Identities=18% Similarity=0.133 Sum_probs=70.3
Q ss_pred CeeEEEEeeCCCEEEEee--CCeEEEEECCCC------eE-------EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 001176 839 SAACIALSKNDSYVMSAS--GGKVSLFNMMTF------KV-------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSV 903 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~s--dg~i~vwd~~~~------~~-------~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v 903 (1132)
....+.++|||+++++++ +.++.++|+.+. +. ..... -.-.....+|.+ +|....+..-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence 345789999999999998 789999998742 11 11122 334568899999 78666677799999
Q ss_pred EEEEcccc----------eeeeeeccccCCeeEEEE------cCCCCEEEEEc
Q 001176 904 QIYNVRVD----------EVKTKLKGHQNRITGLAF------SPTLNALVSSG 940 (1132)
Q Consensus 904 ~iwd~~~~----------~~~~~l~~h~~~V~~l~~------spdg~~l~s~~ 940 (1132)
.-|++... ..+.++.-|..+ -.+.- .|||++|++..
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence 99999864 456666655443 22333 57899999875
No 327
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.74 E-value=0.66 Score=49.72 Aligned_cols=233 Identities=12% Similarity=0.068 Sum_probs=121.6
Q ss_pred CCCeeEEEEeeCCCEEEEee-CCeEEEEECCCCeEE--EEe----eCCCCCeEEEEEeCC---CCCeEEEEe--CCCcEE
Q 001176 837 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM--TMF----MSPPPAATFLAFHPQ---DNNIIAIGM--EDSSVQ 904 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~--~~~----~~~~~~i~~l~~sp~---~~~~lasg~--~dg~v~ 904 (1132)
-...+.++|.|||+++++-. .|.|++++..+++.. ..+ .........|+|+|+ ++.+.++-+ .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34568999999999888887 799999987655432 222 122455789999993 344444322 344566
Q ss_pred EEEcccc----------ee-eeeec---cccCCeeEEEEcCCCCEEEEEcC-------------CCcEEEEECCCccccc
Q 001176 905 IYNVRVD----------EV-KTKLK---GHQNRITGLAFSPTLNALVSSGA-------------DAQLCMWSIDKWEKLK 957 (1132)
Q Consensus 905 iwd~~~~----------~~-~~~l~---~h~~~V~~l~~spdg~~l~s~~~-------------D~~i~iwd~~~~~~~~ 957 (1132)
-|.+..+ +. +..+. .|. ...|+|.|||.+.++.+. .|.|.-.+.+.. ...
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~-ip~ 187 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE-PAP 187 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS-BCT
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC-ccC
Confidence 5665441 11 11122 233 457999999998888663 234444444321 000
Q ss_pred ceee----eCCCCCCCCCCCceeEEECCCCcEEEE--EeCCeEEEEeC-CCCceeecCCC----------------CCCC
Q 001176 958 SRFI----QAPAGRQSPLVGETKVQFHNDQTHLLV--VHESQISVYDS-KLECSRSWSPK----------------DALP 1014 (1132)
Q Consensus 958 ~~~~----~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~v~vwd~-~~~~~~~~~~~----------------~~h~ 1014 (1132)
.... ....|+ .....++|+|+|.+.++ +.++.-.+.-+ .+.. --|... ..+.
T Consensus 188 ~nPf~~~~i~a~G~----RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~n-yGwP~~~g~~~~~~~~~P~~~~~~~~ 262 (347)
T 3das_A 188 GNPFPGSPVYSYGH----RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDN-YGWPEAEGKGGGSGFHDPVAQWSTDE 262 (347)
T ss_dssp TCSSTTCCEEEBCC----SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCB-CCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred CCCCCCCeEEeeCC----CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCE-ecCCcccCCCCCccccCCcEecCCCC
Confidence 0000 000121 34678999999887777 33433333332 1111 000000 0001
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEE
Q 001176 1015 APISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG 1086 (1132)
Q Consensus 1015 ~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 1086 (1132)
.....|+|. +|.++...-..+.|....++.+..+.. +.....+....+..++..| ||.++++.
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~-------~e~~l~~~~gR~~dv~~~p-DG~lyv~t 325 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAAD-------PQAFLEGEYGRLRTVAPAG-GDKLWLVT 325 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSC-------CEEESTTTSSCEEEEEEEE-TTEEEEEE
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecc-------eEEeecCCCCCccEEEECC-CCcEEEEE
Confidence 244566765 455555555555666666654432110 0011112335677888888 65555543
No 328
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.61 E-value=0.14 Score=54.52 Aligned_cols=193 Identities=8% Similarity=0.014 Sum_probs=95.5
Q ss_pred CCCeEEEEeCCC-----eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCC-----cEEEEECCCCe
Q 001176 416 DGLMLGVAFSKH-----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-----MIKVWDVVAGR 485 (1132)
Q Consensus 416 dg~~las~~~dg-----~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg-----~v~vwd~~~~~ 485 (1132)
+++.++.|+.++ .+.+||..+.+ ......+.........+. -+++ +++.|+.++ .+.+||+.+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQ-WTSVANMRDRRSTLGAAV--LNGL--LYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEE--ETTE--EEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCc-eeeCCCCCccccceEEEE--ECCE--EEEEcCCCCCccCceEEEEeCCCCe
Confidence 677778877543 58888887753 222112221111122222 2455 566666543 57788988876
Q ss_pred EEEE--ecCCCCCeEEEEeeccCCccEEEEEecC-------CeEEEEEcCCCCceEEecCCC--CeEEEEEEcCCCCEEE
Q 001176 486 KQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-------GKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLF 554 (1132)
Q Consensus 486 ~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~ 554 (1132)
.... +....... +++.. ++.+++.|+.+ ..+.+||+.+..-...-.... .....+. -+++.++
T Consensus 136 W~~~~~~p~~r~~~-~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv 209 (302)
T 2xn4_A 136 WFHVAPMNTRRSSV-GVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYA 209 (302)
T ss_dssp EEEECCCSSCCBSC-EEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEE
T ss_pred EeecCCCCCcccCc-eEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEE
Confidence 5432 11111111 22221 33666766643 347888887654333211111 1112222 2566667
Q ss_pred EEecCCCC-CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeeE
Q 001176 555 SCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNML 620 (1132)
Q Consensus 555 ~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 620 (1132)
.++.+... ...+.+||+.+.+....-.......-..++ ..++..++.||.++ .+.+||+.+.+-.
T Consensus 210 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 210 VGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp ECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred ECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 76653221 346999999876543322111110111122 22566666676543 4788888776543
No 329
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.57 E-value=0.62 Score=50.67 Aligned_cols=234 Identities=9% Similarity=0.010 Sum_probs=117.9
Q ss_pred CeEEEEEcCCCCeEEEEeCCCeEEEEEecCCCceeeeeee----ecccCCEEEEEEecC---CCcEEEEEEcC-------
Q 001176 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI----DAHVGGVNDIAFAHP---NKQLCIVTCGD------- 472 (1132)
Q Consensus 407 ~V~~v~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l----~~h~~~v~~v~~s~d---~~~~~l~s~~~------- 472 (1132)
....|+|.|||+.|.++...|.|++++.+. ........+ ....+....++|+|+ +.. +.++-+.
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCCc
Confidence 467899999999444555789999998543 211111011 112346789999996 553 3333222
Q ss_pred CCcEEEEECCCC--e--EEEE-ecC------CCCCeEEEEeeccCCccEEEEEec-------------CCeEEEEEcCCC
Q 001176 473 DKMIKVWDVVAG--R--KQYT-FEG------HEAPVYSVCPHHKESIQFIFSTAI-------------DGKIKAWLYDYL 528 (1132)
Q Consensus 473 dg~v~vwd~~~~--~--~~~~-~~~------h~~~v~~i~~~~~~~~~~l~s~s~-------------dg~i~~wd~~~~ 528 (1132)
...|..|++..+ + .... +.. ....-..++|.|+ |.+.++.+. .|.|.-++.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGK--GYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSS--SEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCC--CcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666666433 1 1111 111 1112356888774 455555443 245666665532
Q ss_pred C------------ceEEecCCCCeEEEEEEcC-CCCEEEEEecCCCCCCeEEEEeC--------CCC-------------
Q 001176 529 G------------SRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNE--------SEG------------- 574 (1132)
Q Consensus 529 ~------------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~--------~~~------------- 574 (1132)
- ....+.........++|.| +|++.++- ...++...|.+... ..+
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d-~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNE-HGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEE-ECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEe-cCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 0 1112222234577899999 55544432 21111112222110 000
Q ss_pred --------ceeeeeccccCCceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCeeEEEEeCC-CCCCCcceEEEc
Q 001176 575 --------AIKRTYSGFRKRSLGVVQFDT-------TRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFN 638 (1132)
Q Consensus 575 --------~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s 638 (1132)
.++..+..+ . ....+.|.. ++.++++.-..+.|...++..++.+.....- .....+..+++.
T Consensus 254 ~~~~~~~~~P~~~~~~~-~-ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKDS-P-AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp BSSCTTSCCCSEEESSC-C-CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCCCccCCeEEeCCC-c-CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 011111111 1 455677764 3555555557788888888766544332211 112367899999
Q ss_pred CCCCEEEEE
Q 001176 639 KEGSLLAVT 647 (1132)
Q Consensus 639 ~~~~~l~~~ 647 (1132)
|||.+.++.
T Consensus 332 pdG~lyv~t 340 (353)
T 2g8s_A 332 PDGYLYVLT 340 (353)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999866543
No 330
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.49 E-value=0.19 Score=53.82 Aligned_cols=230 Identities=10% Similarity=-0.019 Sum_probs=113.3
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC-----C------CcEEEEECCCCeEE
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----D------KMIKVWDVVAGRKQ 487 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-----d------g~v~vwd~~~~~~~ 487 (1132)
+++.|+ ..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+||..+++-.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 80 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL 80 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred EEEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence 344555 568899988765221 22322222233333345666 6666663 1 12778898887643
Q ss_pred EEecCCCCCe--EEEEeeccCCccEEEEEecC--------CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001176 488 YTFEGHEAPV--YSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 557 (1132)
Q Consensus 488 ~~~~~h~~~v--~~i~~~~~~~~~~l~s~s~d--------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1132)
. +.....+- .+++.. ++.+++.|+.+ ..+.+||..+.+-...-..........+..-+++.++.++
T Consensus 81 ~-~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 156 (315)
T 4asc_A 81 G-MPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGG 156 (315)
T ss_dssp E-CCCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred E-CCCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeC
Confidence 2 22111111 112221 33666777643 3588888876543221111111111112224566666666
Q ss_pred cCC--CCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeeEEEEeCCCCCC
Q 001176 558 TSK--EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDADGGLP 630 (1132)
Q Consensus 558 ~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~ 630 (1132)
.+. .....+.+||+.+.+-...-.......-.+++. -++..++.||.++ .+.+||+.+.+-...-.....
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-- 233 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-- 233 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--
Confidence 411 123468999998765433221111101112222 2566777777543 588999988765544332221
Q ss_pred CcceEEEcCCCCEEEEEeCCC--------------cEEEEEcCCc
Q 001176 631 ASPRLRFNKEGSLLAVTTSDN--------------GIKILANSDG 661 (1132)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg--------------~i~iw~~~~~ 661 (1132)
.....+..-++++++.|+.++ .+.+||..+.
T Consensus 234 r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 234 RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 122222233667777777532 3667787665
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.43 E-value=0.18 Score=63.04 Aligned_cols=199 Identities=14% Similarity=0.142 Sum_probs=122.8
Q ss_pred EEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc-ceeeeeeccc
Q 001176 842 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVKTKLKGH 920 (1132)
Q Consensus 842 ~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 920 (1132)
+.-++|..+.+|.-...++.|||+++.+.+..+.-. ..|.-=.|-. .+.|+..+ +..|+-|++.. ..+...+.-|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 455778888888877889999999988777766543 3455555543 34555554 44799999964 2444555545
Q ss_pred ----cCCeeEEEEcCCCCEEEEEc-------CCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEE---CCCCcEE
Q 001176 921 ----QNRITGLAFSPTLNALVSSG-------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHL 986 (1132)
Q Consensus 921 ----~~~V~~l~~spdg~~l~s~~-------~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~dg~~l 986 (1132)
...|..-..+++.++++..| ..|.+.+|..+.+. -+...||... -..+.+ .+..+.+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~~---F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAAS---FAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHhh---hheeccCCCCCCceEE
Confidence 45677778899999988655 34788899887643 2334444311 001111 1112233
Q ss_pred EEEe----CCeEEEEeC-CC---Cce------eecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeccc
Q 001176 987 LVVH----ESQISVYDS-KL---ECS------RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1052 (1132)
Q Consensus 987 ~~~~----d~~v~vwd~-~~---~~~------~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~ 1052 (1132)
+.+. .+.+++-++ .. ... ..+.+..+-.+--.+|..|+.-..+...+.-|.|.++|++||.++..-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 3232 367888887 21 111 111111111233346777888888888899999999999999998654
Q ss_pred C
Q 001176 1053 G 1053 (1132)
Q Consensus 1053 ~ 1053 (1132)
.
T Consensus 297 r 297 (1630)
T 1xi4_A 297 R 297 (1630)
T ss_pred c
Confidence 3
No 332
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.41 E-value=1 Score=48.38 Aligned_cols=194 Identities=11% Similarity=0.116 Sum_probs=107.3
Q ss_pred CeeEEEEccCCCeEEEEE------------cCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEE
Q 001176 345 NVMSMDFHPQQQTILLVG------------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 412 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g------------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 412 (1132)
..-.++..|+|. +++++ ..+|.|.++|..+..... ..+.+ ... . +.........+.
T Consensus 51 G~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~---~g~--~-----~~~~~f~PhGi~ 118 (355)
T 3sre_A 51 GSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEI---IGN--T-----LDISSFNPHGIS 118 (355)
T ss_dssp CCCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCE-EECEE---ECS--S-----CCGGGCCEEEEE
T ss_pred CcceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEc---cCC--C-----CCcCceeeeeeE
Confidence 345666778775 33332 168899999987432111 01111 000 0 001223455666
Q ss_pred EcC--CCC-eEEEE-eC--CCeEEEEEecCCCc-eeeeeeeecc-cCCEEEEEEecCCCcEEEEEEc-------------
Q 001176 413 WGP--DGL-MLGVA-FS--KHIVHLYTYNPTGE-LRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCG------------- 471 (1132)
Q Consensus 413 ~sp--dg~-~las~-~~--dg~i~iwd~~~~~~-~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s~~------------- 471 (1132)
+.+ +|+ +|.++ .. +.+|.+|+++.+.. ......+.+. -...+++++.++|. +.++..
T Consensus 119 ~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~~~~e~ 196 (355)
T 3sre_A 119 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEM 196 (355)
T ss_dssp EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHHHHHHH
T ss_pred EEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCcccccchh
Confidence 655 454 44444 22 56899999876533 2222333332 23678999999998 566653
Q ss_pred ----CCCcEEEEECCCCeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCeEEEE
Q 001176 472 ----DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMM 544 (1132)
Q Consensus 472 ----~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~ 544 (1132)
..|.|..+|. ++. ..+...-..-+.++|+|++. .+.++-+..+.|..|+++...... .+ ...+..-.+
T Consensus 197 ~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~-~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi 271 (355)
T 3sre_A 197 HLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGK-YVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNI 271 (355)
T ss_dssp HTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEE
T ss_pred hccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCC-EEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceE
Confidence 1244555554 332 22222334578899988652 344555678899999987543221 23 224567788
Q ss_pred EEcC-CCCEEEEEe
Q 001176 545 AYSA-DGTRLFSCG 557 (1132)
Q Consensus 545 ~~s~-~~~~l~~~~ 557 (1132)
++.+ +|++.+++.
T Consensus 272 ~vD~e~G~lwva~~ 285 (355)
T 3sre_A 272 SVDPVTGDLWVGCH 285 (355)
T ss_dssp EECTTTCCEEEEEE
T ss_pred EEeCCCCcEEEEec
Confidence 8988 588777664
No 333
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.27 E-value=0.28 Score=52.34 Aligned_cols=232 Identities=7% Similarity=-0.038 Sum_probs=115.3
Q ss_pred CCCeEEEEeCC----CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC----C-----CcEEEEECC
Q 001176 416 DGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----D-----KMIKVWDVV 482 (1132)
Q Consensus 416 dg~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~----d-----g~v~vwd~~ 482 (1132)
++..++.|+.+ ..+.+||..+++-.. ...+......- +++ .-++. +++.|+. + ..+.++|+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~-~~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGC-VVGGL--LYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEE-EETTE--EEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEE-EECCE--EEEECCCcCCCCCCeecceEEEECCC
Confidence 56677777642 358888887754221 11111111111 122 22454 5666665 2 468899988
Q ss_pred CCeEEEE--ecCCCCCeEEEEeeccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCC--CCeEEEEEEcCCCCEE
Q 001176 483 AGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRL 553 (1132)
Q Consensus 483 ~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l 553 (1132)
+.+.... +......-..+.+ ++.+++.|+.+ ..+.+||..+..-...-... ......+.+ +++.+
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 172 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLY 172 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEE
T ss_pred CCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEE
Confidence 8764321 1111111122222 33677776644 35778888765433221111 111122222 56666
Q ss_pred EEEecCCCC-CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeeEEEEeCCC
Q 001176 554 FSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADG 627 (1132)
Q Consensus 554 ~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~ 627 (1132)
+.++.+... ...+.+||+.+.+....-.......-.+++.. ++..++.||.+ ..+.+||+.+.+....-....
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 251 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH 251 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC
Confidence 666653321 35689999987654332111111011122222 56666667654 569999998876544322221
Q ss_pred CCCCcceEEEcCCCCEEEEEeCC-----CcEEEEEcCCc
Q 001176 628 GLPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 661 (1132)
Q Consensus 628 ~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~ 661 (1132)
. .....+..-++++++.|+.+ ..+.+||..+.
T Consensus 252 ~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 252 R--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp C--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred C--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 1 11122222367777777653 35778887765
No 334
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.26 E-value=0.62 Score=49.78 Aligned_cols=235 Identities=8% Similarity=-0.053 Sum_probs=114.2
Q ss_pred EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC-----C------
Q 001176 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-----K------ 426 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~-----d------ 426 (1132)
+++.|+ ..+.+||..+++.... + +..........+...+++.++.|+. .
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~-------------~-----~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 66 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCA-------------S-----LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS 66 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEE-------------E-----CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEE
T ss_pred EEEEcC--CceEEECCCCCeEecC-------------C-----CCCCCCccceEEEEECCEEEEEcCcccCCCCCccccc
Confidence 566676 5799999988763210 0 1111112223334458888888873 1
Q ss_pred CeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC--------CcEEEEECCCCeEEEE--ecCCCCC
Q 001176 427 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--------KMIKVWDVVAGRKQYT--FEGHEAP 496 (1132)
Q Consensus 427 g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d--------g~v~vwd~~~~~~~~~--~~~h~~~ 496 (1132)
..+.+||..+++- .....+.........+.+ +++ +++.|+.+ ..+.++|+.+.+-... +......
T Consensus 67 ~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 141 (315)
T 4asc_A 67 AYFLQFDHLDSEW-LGMPPLPSPRCLFGLGEA--LNS--IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG 141 (315)
T ss_dssp EEEEEEETTTTEE-EECCCBSSCEESCEEEEE--TTE--EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred cceEEecCCCCeE-EECCCCCcchhceeEEEE--CCE--EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc
Confidence 1267788776532 211111111111112222 444 56666632 4688999988764321 1111111
Q ss_pred eEEEEeeccCCccEEEEEec-C-----CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCC-CCeEEEE
Q 001176 497 VYSVCPHHKESIQFIFSTAI-D-----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG-ESHLVEW 569 (1132)
Q Consensus 497 v~~i~~~~~~~~~~l~s~s~-d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~i~~w 569 (1132)
-..+.+ ++.+++.|+. + ..+.+||..+..-...-..........+..-+++.++.++.+..+ ...+.+|
T Consensus 142 ~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y 217 (315)
T 4asc_A 142 HTVLSH----MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVY 217 (315)
T ss_dssp CEEEEE----TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEE
T ss_pred eeEEEE----CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEE
Confidence 112221 3367777766 2 458888887654332211111111111112266777777653221 2358899
Q ss_pred eCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCeeEEE
Q 001176 570 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE--------------FQIKFWDMDNMNMLTT 622 (1132)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~ 622 (1132)
|+.+.+....-.......-.+++. -++..++.||.+ ..+.+||+.+.+-...
T Consensus 218 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 218 SITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred ECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 998775433321111101112222 255666667653 2477888887765544
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.19 E-value=0.47 Score=50.81 Aligned_cols=230 Identities=13% Similarity=0.043 Sum_probs=111.0
Q ss_pred eEEEEeCCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcC----CC-------cEEEEECCCCeEE
Q 001176 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----DK-------MIKVWDVVAGRKQ 487 (1132)
Q Consensus 419 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~----dg-------~v~vwd~~~~~~~ 487 (1132)
.++.|+. .+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++..
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 91 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV 91 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEE
T ss_pred hhhcccc--ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEE
Confidence 3444443 37888888765322 12221111222233345566 6777773 12 2778898877653
Q ss_pred EE--ecCCCCCeEEEEeeccCCccEEEEEecC-------CeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEec
Q 001176 488 YT--FEGHEAPVYSVCPHHKESIQFIFSTAID-------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 558 (1132)
Q Consensus 488 ~~--~~~h~~~v~~i~~~~~~~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1132)
.. +...... .+++.. ++.+++.|+.+ ..+.+||..+.+-...-..........+...+++.++.++.
T Consensus 92 ~~~~~p~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 167 (318)
T 2woz_A 92 GLPPLPSARCL-FGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGK 167 (318)
T ss_dssp ECSCBSSCBCS-CEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCE
T ss_pred ECCCCCccccc-cceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCC
Confidence 21 1111111 122221 33677777764 34777887765433321111111111122246666666654
Q ss_pred CCC--CCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeeEEEEeCCCCCCC
Q 001176 559 SKE--GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLPA 631 (1132)
Q Consensus 559 ~~~--~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1132)
+.+ ....+.+||+.+.+....-.......-.+++. -++..++.||.+ ..+.+||+.+.+-...-..... .
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 244 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--R 244 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--C
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--c
Confidence 211 13459999998876433221111101112222 255666667633 3577899887765443222211 1
Q ss_pred cceEEEcCCCCEEEEEeCC--------------CcEEEEEcCCc
Q 001176 632 SPRLRFNKEGSLLAVTTSD--------------NGIKILANSDG 661 (1132)
Q Consensus 632 v~~~~~s~~~~~l~~~~~d--------------g~i~iw~~~~~ 661 (1132)
....+...++.+++.|+.+ ..+.+||..+.
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 245 SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 1222223356777777653 35777887765
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.13 E-value=1.9 Score=46.23 Aligned_cols=236 Identities=13% Similarity=0.079 Sum_probs=119.2
Q ss_pred CCCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC---CC
Q 001176 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD---GL 418 (1132)
Q Consensus 342 h~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~ 418 (1132)
.-...+.|+|.|||+ ++++-...|.|++++..+++... +. .+ ..+.....+....|+|+|| +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~---v~--~~--------~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTE---LG--EV--------PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE---EE--EC--------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEee---ec--cc--------CceeecCCCCceeeEeccccccCC
Confidence 456789999999998 67776558999999866554311 00 00 0112334567899999996 34
Q ss_pred eEEEE---eCCCeEEEEEecCCC----c---eeee-eeee-cccCCEEEEEEecCCCcEEEEEEcC-------------C
Q 001176 419 MLGVA---FSKHIVHLYTYNPTG----E---LRQH-LEID-AHVGGVNDIAFAHPNKQLCIVTCGD-------------D 473 (1132)
Q Consensus 419 ~las~---~~dg~i~iwd~~~~~----~---~~~~-~~l~-~h~~~v~~v~~s~d~~~~~l~s~~~-------------d 473 (1132)
+|... ..+..|.-|.+..+. . .+.+ ..+. +....-..|+|.|||. +.++.+. .
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~Gd~~~~~~~qd~~~~~ 173 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTGESGDTGLSQDRKSLG 173 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECBCTTCGGGTTCTTCST
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEECCCCCCccccCCCCCC
Confidence 44332 234567777766521 1 1111 1121 1112346799999997 5555432 2
Q ss_pred CcEEEEECCCCe----------EEEEecCCCCCeEEEEeeccCCccEEEEE-ecCCeEEEEEcCCCC-------------
Q 001176 474 KMIKVWDVVAGR----------KQYTFEGHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLG------------- 529 (1132)
Q Consensus 474 g~v~vwd~~~~~----------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~------------- 529 (1132)
|.|.-.+.. |+ .+.. .+|. ....++|+|. |.+.++- +.|+.-.+--+..+.
T Consensus 174 G~IlRi~~d-G~ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~--G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~ 248 (347)
T 3das_A 174 GKILRMTPD-GEPAPGNPFPGSPVYS-YGHR-NVQGLAWDDK--QRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGG 248 (347)
T ss_dssp TCEEEECTT-SSBCTTCSSTTCCEEE-BCCS-BCCEEEECTT--CCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCC
T ss_pred CEEEEEeCC-CCccCCCCCCCCeEEe-eCCC-CcceEEECCC--CCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCC
Confidence 344444432 22 1222 2443 3557888774 3444433 223322222222111
Q ss_pred -----ceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCce----eeeeccccCCceEEEEEeCCCCEE
Q 001176 530 -----SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRF 600 (1132)
Q Consensus 530 -----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l 600 (1132)
....+..+......++|. +|..++.... ...|....+..... ...+.+.. ..+..++..|||..+
T Consensus 249 ~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~----~~~l~~v~~~~~~~~~~~e~~l~~~~-gR~~dv~~~pDG~ly 322 (347)
T 3das_A 249 SGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLR----GERLWRIPLKGTAAAADPQAFLEGEY-GRLRTVAPAGGDKLW 322 (347)
T ss_dssp TTCCCCSEEECTTTCCEEEEEEE-TTEEEEEEST----TCSEEEEEEETTEESSCCEEESTTTS-SCEEEEEEEETTEEE
T ss_pred ccccCCcEecCCCCCCCcceEEE-cCceeecccc----CCEEEEEEecCCceecceEEeecCCC-CCccEEEECCCCcEE
Confidence 111222122244566665 3444444332 34465556554322 22233322 267888888888666
Q ss_pred EEEE
Q 001176 601 LAAG 604 (1132)
Q Consensus 601 ~~~~ 604 (1132)
++.+
T Consensus 323 v~td 326 (347)
T 3das_A 323 LVTS 326 (347)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5543
No 337
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.96 E-value=0.9 Score=48.30 Aligned_cols=230 Identities=13% Similarity=0.082 Sum_probs=117.0
Q ss_pred eeCCCEEEEee-C----CeEEEEECCCCeEEEEeeCCCCCe-EEEEEeCCCCCeEEEEeC----C-----CcEEEEEccc
Q 001176 846 SKNDSYVMSAS-G----GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGME----D-----SSVQIYNVRV 910 (1132)
Q Consensus 846 s~dg~~la~~s-d----g~i~vwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~----d-----g~v~iwd~~~ 910 (1132)
.-++..++.|+ + ..+.+||..+.+-...-..+.... .+++. - ++.+++.|+. + ..+.+||..+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 33566667665 2 468999988765322211111111 12222 2 5678888776 3 3688899877
Q ss_pred cee--eeeeccccCCeeEEEEcCCCCEEEEEcCC-----CcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCC
Q 001176 911 DEV--KTKLKGHQNRITGLAFSPTLNALVSSGAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 983 (1132)
Q Consensus 911 ~~~--~~~l~~h~~~V~~l~~spdg~~l~s~~~D-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 983 (1132)
.+- +..+......-..+. -+++.++.||.+ ..+.+||..+.+=.. +..... +......+.+ ++
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~---~r~~~~~~~~--~~ 169 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHL---VAPMLT---RRIGVGVAVL--NR 169 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEE---CCCCSS---CCBSCEEEEE--TT
T ss_pred CeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeE---CCCCCc---cccceEEEEE--CC
Confidence 642 222221111122222 267777777643 358888987754211 111110 0012222333 56
Q ss_pred cEEEEE-eC-----CeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCcceeccc
Q 001176 984 THLLVV-HE-----SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRFRCRI 1052 (1132)
Q Consensus 984 ~~l~~~-~d-----~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d-----g~i~vwd~~~~~~~~~~ 1052 (1132)
+.++.+ .+ ..+.+||.....-............-..+.+ ++++++.|+.+ ..+.+||+.+.+-...-
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 666664 22 4588999854443333221110111222222 77788888765 46999999887643221
Q ss_pred CCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCC-----CcEEEEecCCCc
Q 001176 1053 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-----GAVHVVEPSDAE 1101 (1132)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~D-----g~i~vW~~~~~~ 1101 (1132)
. +|.. ...| ..+.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 248 ~----~p~~-r~~~----~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 248 P----MKHR-RSAL----GITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp C----CSSC-CBSC----EEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred C----CCCC-ccce----EEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1 1111 0122 12222 56788888755 467788887765
No 338
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.80 E-value=0.85 Score=57.26 Aligned_cols=89 Identities=7% Similarity=0.052 Sum_probs=56.6
Q ss_pred CCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCC
Q 001176 563 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 642 (1132)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1132)
..+|.+.|+..+..+..-.- ...+.-.+|..+.++.- ....+.|+|+.+...+....... .|.--.|-.+.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi----~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e---~VvfWkWis~~- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 117 (1630)
T ss_pred CceEEEEECCCCCCcccccc----cchhhccCCCcceEEEe-cCCeEEEeehHHhhhhcccccCC---CceEEEecCCC-
Confidence 44788999887664422211 12234578887766664 37899999999988777766543 45555554443
Q ss_pred EEEEEeCCCcEEEEEcCCc
Q 001176 643 LLAVTTSDNGIKILANSDG 661 (1132)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~ 661 (1132)
.|+..+ +..|.-|++...
T Consensus 118 ~l~lVT-~~aVyHW~~~~~ 135 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGE 135 (1630)
T ss_pred eeEEEc-CCeEEEeccCCC
Confidence 444444 348899998654
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.66 E-value=0.14 Score=49.91 Aligned_cols=144 Identities=13% Similarity=-0.036 Sum_probs=83.2
Q ss_pred CeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEE------EEeeC-CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc
Q 001176 839 SAACIALSKNDSYVMSASGGKVSLFNMMTFKVM------TMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 911 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~------~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 911 (1132)
.+..++|+|+|.+.++ .+|.+.-.+..+.... ..+-. --..-.++.|.| +|.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5679999999998888 8888777776442110 11100 001147899999 8888877 5698887776432
Q ss_pred eeee-------eeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccccc----ceeeeCCCCCCCCCCCceeEEEC
Q 001176 912 EVKT-------KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK----SRFIQAPAGRQSPLVGETKVQFH 980 (1132)
Q Consensus 912 ~~~~-------~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~s 980 (1132)
..-. .-..-=..+..|.|.|+|.+.+.. |+.++-+...+..... ...+..... ..-..+.|.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~-----~~yr~l~f~ 190 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW-----DTFKFLFFS 190 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG-----GGEEEEEEC
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc-----ceEEEEEEC
Confidence 1111 111111357899999999888776 7765433332211000 011111111 123456799
Q ss_pred CCCcEEEEEeCCeE
Q 001176 981 NDQTHLLVVHESQI 994 (1132)
Q Consensus 981 ~dg~~l~~~~d~~v 994 (1132)
++|...++. ++.+
T Consensus 191 ~~G~l~~v~-~g~~ 203 (236)
T 1tl2_A 191 SVGTLFGVQ-GGKF 203 (236)
T ss_dssp TTSCEEEEE-TTEE
T ss_pred CCCcEEEEe-CCeE
Confidence 999888887 6643
No 340
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.66 E-value=0.0094 Score=47.66 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHcCCCcc--HHHHHHHHhcccHHHHHHH
Q 001176 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKHFEDQVQAGEWDEVERY 56 (1132)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~ 56 (1132)
++|+.+-|++||..+||.+++.+|.+|.++..+ ...-..-.|+-+|..++++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRL 63 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRL 63 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHH
Confidence 568999999999999999999999999998875 2223455777888777654
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.65 E-value=1 Score=48.10 Aligned_cols=234 Identities=11% Similarity=0.011 Sum_probs=109.8
Q ss_pred EEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEeC----CC------
Q 001176 358 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS----KH------ 427 (1132)
Q Consensus 358 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~----dg------ 427 (1132)
+++.|+. .+.+||..+++.... + +......-...+...++..++.|+. ++
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~-------------~-----~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 77 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLT-------------A-----LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQ 77 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEE-------------E-----ECTTSCSSEEEEECSSSCEEEEESSCC-------CCC
T ss_pred hhhcccc--ceEEECCCCCceecc-------------c-----CCccCCccceEEEEECCEEEEECCcccCccccCCCcc
Confidence 5666663 488899887754220 0 0001111122334557888888873 12
Q ss_pred -eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCC-------CcEEEEECCCCeEEEEecCCCCCe--
Q 001176 428 -IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-------KMIKVWDVVAGRKQYTFEGHEAPV-- 497 (1132)
Q Consensus 428 -~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-------g~v~vwd~~~~~~~~~~~~h~~~v-- 497 (1132)
.+.+||..+++- .....+.........+.+ +++ +++.|+.+ ..+.++|+.+.+-... .....+.
T Consensus 78 ~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~ 151 (318)
T 2woz_A 78 SYFFQLDNVSSEW-VGLPPLPSARCLFGLGEV--DDK--IYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYG 151 (318)
T ss_dssp BEEEEEETTTTEE-EECSCBSSCBCSCEEEEE--TTE--EEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEES
T ss_pred ccEEEEeCCCCcE-EECCCCCccccccceEEE--CCE--EEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccc
Confidence 167778776532 211111111111122222 454 56666643 3578889888765432 1111111
Q ss_pred EEEEeeccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCeE-EEEEEcCCCCEEEEEecCCCC-CCeEEEE
Q 001176 498 YSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWC-TMMAYSADGTRLFSCGTSKEG-ESHLVEW 569 (1132)
Q Consensus 498 ~~i~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~~~~~-~~~i~~w 569 (1132)
.+++. . ++.+++.|+.+ ..+.+||+.+..-...-....... .+++. -+++.++.++.+.++ ...+.+|
T Consensus 152 ~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~y 227 (318)
T 2woz_A 152 HNVIS-H--NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAF 227 (318)
T ss_dssp CEEEE-E--TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEE
T ss_pred cEEEE-E--CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEE
Confidence 11111 1 33666776642 358888887654333211111111 12222 356677776643221 2457889
Q ss_pred eCCCCceeeeeccccCCceEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCeeEEE
Q 001176 570 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE--------------FQIKFWDMDNMNMLTT 622 (1132)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~ 622 (1132)
|+.+.+....-.......-.+++ ..++..++.||.+ ..+.+||+.+.+-...
T Consensus 228 d~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 228 DLKTNKWEVMTEFPQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp ETTTCCEEECCCCSSCCBSCEEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred ECCCCeEEECCCCCCcccceEEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 98876543321111110111222 2245666666643 3467777777655443
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.62 E-value=0.37 Score=52.67 Aligned_cols=234 Identities=9% Similarity=-0.020 Sum_probs=110.9
Q ss_pred CCCeEEEEeCC-CeEEEEEecC-CCceeeeeeee-cccCCEEEEEEecCCCcEEEEEEcC-C---------CcEEEEECC
Q 001176 416 DGLMLGVAFSK-HIVHLYTYNP-TGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGD-D---------KMIKVWDVV 482 (1132)
Q Consensus 416 dg~~las~~~d-g~i~iwd~~~-~~~~~~~~~l~-~h~~~v~~v~~s~d~~~~~l~s~~~-d---------g~v~vwd~~ 482 (1132)
+++.++.|+.+ ..+.+||..+ .........+. .....-.++. -+++ +++.|+. + ..+.+||+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGN--LYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTE--EEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCE--EEEEcCCCCCCCccceeeccEEEEeCC
Confidence 67777777653 4688888864 22232222222 1111112222 2455 5666665 2 468899988
Q ss_pred CCeEEEEe--c-CCCCCeEEEEeeccCCccEEEEEecC---------------------------------------CeE
Q 001176 483 AGRKQYTF--E-GHEAPVYSVCPHHKESIQFIFSTAID---------------------------------------GKI 520 (1132)
Q Consensus 483 ~~~~~~~~--~-~h~~~v~~i~~~~~~~~~~l~s~s~d---------------------------------------g~i 520 (1132)
+.+-...- . .....-.++. . ++.+++.|+.+ ..+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFV--H--NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFL 170 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEE--E--TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEE
T ss_pred CCcEEECCCCCCcccccceEEE--E--CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccE
Confidence 87643321 1 1111111222 2 33777888754 578
Q ss_pred EEEEcCCCCceEEecCCC-CeE-EEEEEcCCCCEEEEEecCCCC--CCeEEEEeC--CCCceee--eeccccCCceEEEE
Q 001176 521 KAWLYDYLGSRVDYDAPG-NWC-TMMAYSADGTRLFSCGTSKEG--ESHLVEWNE--SEGAIKR--TYSGFRKRSLGVVQ 592 (1132)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~-~~v-~~~~~s~~~~~l~~~~~~~~~--~~~i~~wd~--~~~~~~~--~~~~~~~~~v~~~~ 592 (1132)
.+||..+..-...-.... ... .+++. -+++.++.++.+..+ ...+..||+ .+.+... .+..... .....+
T Consensus 171 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~-~~~~~~ 248 (357)
T 2uvk_A 171 LSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG-VAGGFA 248 (357)
T ss_dssp EEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC-CBSCEE
T ss_pred EEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc-cccceE
Confidence 888887755433222111 111 22222 255666666542211 345777876 4443222 1111111 111112
Q ss_pred EeCCCCEEEEEEcC----------------------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001176 593 FDTTRNRFLAAGDE----------------------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 650 (1132)
Q Consensus 593 ~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1132)
...++..++.||.+ ..+.+||+.+.+....-..... .....+...++++++.|+.+
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--RAYGVSLPWNNSLLIIGGET 326 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC--CBSSEEEEETTEEEEEEEEC
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC--cccceeEEeCCEEEEEeeeC
Confidence 23355666666632 2578899887654443322222 22233344577888888864
Q ss_pred C------cEEEEEcCCc
Q 001176 651 N------GIKILANSDG 661 (1132)
Q Consensus 651 g------~i~iw~~~~~ 661 (1132)
+ .|.++++.++
T Consensus 327 ~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 327 AGGKAVTDSVLITVKDN 343 (357)
T ss_dssp GGGCEEEEEEEEEC-CC
T ss_pred CCCCEeeeEEEEEEcCc
Confidence 3 3556677776
No 343
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.51 E-value=0.42 Score=51.79 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=86.6
Q ss_pred CCeEEEEEcCCCCceEEecCC----CCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc------------eeeee
Q 001176 517 DGKIKAWLYDYLGSRVDYDAP----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA------------IKRTY 580 (1132)
Q Consensus 517 dg~i~~wd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~------------~~~~~ 580 (1132)
++.||..++.....-..+... -..+..+..+|+|++|+..+ +..|.+..+..+. ..+.+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-----~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty 114 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-----DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY 114 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-----SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-----CCeEEEEEecCccccCcccccccccceeEE
Confidence 356666666543333333332 23577899999999999986 5568888876321 11233
Q ss_pred ccc-----cCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCC--eeEEEEe-------CCCCCCCcceEEEcCCCCE
Q 001176 581 SGF-----RKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNM--NMLTTVD-------ADGGLPASPRLRFNKEGSL 643 (1132)
Q Consensus 581 ~~~-----~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~--~~~~~~~-------~~~~~~~v~~~~~s~~~~~ 643 (1132)
.-. ....|..+.|+|-+ ..|++-..|+.|++||+... ++. .+. .......|.+++|..++-.
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT 193 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLT 193 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcE
Confidence 221 12369999999965 68999999999999999852 222 232 1122246788899888777
Q ss_pred EEEEe--CCCcEEEE
Q 001176 644 LAVTT--SDNGIKIL 656 (1132)
Q Consensus 644 l~~~~--~dg~i~iw 656 (1132)
|...+ ..|.|+..
T Consensus 194 LYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 194 LYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEecCCCCCEEEE
Confidence 77655 66776654
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.26 E-value=3.8 Score=45.92 Aligned_cols=198 Identities=12% Similarity=0.121 Sum_probs=113.1
Q ss_pred eCCCEEEEee--CCeEEEEECCCCeEEEEeeCC-CCCeEEEEEe--CCCCCeEEEEeC-------CCcE---------EE
Q 001176 847 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFH--PQDNNIIAIGME-------DSSV---------QI 905 (1132)
Q Consensus 847 ~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s--p~~~~~lasg~~-------dg~v---------~i 905 (1132)
.||++|...+ +..|-..+++..++-..+.-+ ...+..+.|- | +..+++.++. ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 4889999987 577999999999887766644 3567888886 6 5666666652 2321 11
Q ss_pred E---EcccceeeeeeccccCCeeEEEEcCCCCEEEEEcCC---------------CcEEEEECCC-------cc--ccc-
Q 001176 906 Y---NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---------------AQLCMWSIDK-------WE--KLK- 957 (1132)
Q Consensus 906 w---d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D---------------~~i~iwd~~~-------~~--~~~- 957 (1132)
| |..+.+...++.- .+..-.+...++|++.++.+-+ ..+.++++.. ++ .+.
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 1 2222222222111 1222334557788887776532 1355666532 11 011
Q ss_pred --ceeeeCCC----CCC-----CCCCCceeEEECCCCcEEEEEe--CCeEEEEeCCC-------Cc---eeecCCCCCCC
Q 001176 958 --SRFIQAPA----GRQ-----SPLVGETKVQFHNDQTHLLVVH--ESQISVYDSKL-------EC---SRSWSPKDALP 1014 (1132)
Q Consensus 958 --~~~~~~~~----~~~-----~~~~~v~~~~~s~dg~~l~~~~--d~~v~vwd~~~-------~~---~~~~~~~~~h~ 1014 (1132)
...+.... +.. +.......+.++|||++++++. +.++.|+|.+. +. ...........
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 01111111 000 0113456889999999999964 78899999831 11 01111111114
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001176 1015 APISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1046 (1132)
Q Consensus 1015 ~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~ 1046 (1132)
..-...+|.++|.-..+-..|..|.-|++...
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 55678899999955555668999999999764
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.21 E-value=0.28 Score=47.90 Aligned_cols=183 Identities=8% Similarity=-0.013 Sum_probs=96.7
Q ss_pred CCCeEEEEeCCCcEEEEEccccee-----eeeeccc--cCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCccccc----c
Q 001176 890 DNNIIAIGMEDSSVQIYNVRVDEV-----KTKLKGH--QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK----S 958 (1132)
Q Consensus 890 ~~~~lasg~~dg~v~iwd~~~~~~-----~~~l~~h--~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~----~ 958 (1132)
...+|.....| +|+.=....+.. ..+..++ =..++.++|+|+|.+.+. .+|.+.-.+..+..... .
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34567777777 665544443321 1111122 236789999999987666 67765555543311100 1
Q ss_pred eeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC-CCCceeecCCC-----CCCCCCeEEEEEccCCCEEEEE
Q 001176 959 RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPK-----DALPAPISSAIYSCDGLLVYAG 1032 (1132)
Q Consensus 959 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~-----~~h~~~i~~i~~s~dg~~las~ 1032 (1132)
..+... +- ..-..+.|.|+|.+.++ .||.|.-++. +... ..|... ..--..+..+.|.|+|.+.++.
T Consensus 80 t~IG~~-Gw----~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~-~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 80 KKIGNG-GW----NQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDT-DNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp EEEECS-CG----GGCSEEEECTTSCEEEE-ETTEEEEESCCCSTT-CCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred cEeccc-cc----ccceEEEECCCCCEEEe-CCCEEEEeCCCcCCC-CceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 111110 10 11368899999998888 7798887776 2111 122110 0002468999999999877766
Q ss_pred ecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCc
Q 001176 1033 FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGA 1091 (1132)
Q Consensus 1033 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~ 1091 (1132)
|+.++-+...++....-+. ....+.+........+.|.| ++.+.++. ++.
T Consensus 153 --dg~lyr~~~P~~~~~~wl~----~~~~~g~~g~~~yr~l~f~~-~G~l~~v~--~g~ 202 (236)
T 1tl2_A 153 --GQQFYKALPPVSNQDNWLA----RATKIGQGGWDTFKFLFFSS-VGTLFGVQ--GGK 202 (236)
T ss_dssp --TTEEEEECCCSSTTCCHHH----HCEEEESSSGGGEEEEEECT-TSCEEEEE--TTE
T ss_pred --CCcEEecCCCCCCCccccc----ccceeccCCcceEEEEEECC-CCcEEEEe--CCe
Confidence 8886655444333221111 00111112223344566777 66555555 663
No 346
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.84 E-value=2.2 Score=46.28 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=49.5
Q ss_pred eCCCEEEEee--CCeEEEEECCC----CeEEEEee-CCCCCeEEEEEeCCCCCeEEEEeC-C---------CcEEEEEcc
Q 001176 847 KNDSYVMSAS--GGKVSLFNMMT----FKVMTMFM-SPPPAATFLAFHPQDNNIIAIGME-D---------SSVQIYNVR 909 (1132)
Q Consensus 847 ~dg~~la~~s--dg~i~vwd~~~----~~~~~~~~-~~~~~i~~l~~sp~~~~~lasg~~-d---------g~v~iwd~~ 909 (1132)
-+++.++.|+ ...+.+||..+ .+.+..+. .....-.++.+ ++++++.|+. + ..+.+||..
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 3777777776 46799999864 22222222 11111222332 5678888776 2 468899988
Q ss_pred ccee--eeeeccccCCeeEEEEcCCCCEEEEEcCC
Q 001176 910 VDEV--KTKLKGHQNRITGLAFSPTLNALVSSGAD 942 (1132)
Q Consensus 910 ~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~~~D 942 (1132)
+.+- +..+. ...+....+...++++++.||.+
T Consensus 95 ~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 95 TNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCC
T ss_pred CCcEEECCCCC-CcccccceEEEECCEEEEEeCcC
Confidence 7642 22222 01111122222577888888865
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.81 E-value=4.7 Score=42.32 Aligned_cols=181 Identities=8% Similarity=0.039 Sum_probs=98.5
Q ss_pred EEEEccCCCeEEEEEcCC-------------CcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEc
Q 001176 348 SMDFHPQQQTILLVGTNV-------------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 414 (1132)
Q Consensus 348 ~~~~spdg~~lla~g~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 414 (1132)
+--++++|.++..+...+ ..|+..++..++... +... .+..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~----~~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD----PCIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS----CEEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC----CccEEE
Confidence 445688998777666543 356666666554221 1111 123788
Q ss_pred CCCCeEEEEe--CCC--eEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEe
Q 001176 415 PDGLMLGVAF--SKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 490 (1132)
Q Consensus 415 pdg~~las~~--~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 490 (1132)
+++++|+-.. .++ .|..-++++.. .. .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999998776 334 45555555433 22 2333322 457888984 2334334678888898766654333
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCC--eEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001176 491 EGHEAPVYSVCPHHKESIQFIFSTAIDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 568 (1132)
Q Consensus 491 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 568 (1132)
.+ ... ..+.|.+ .+|+-....+ .|..-+++..... .+.. ..+ ..++|++++|+.+... ....|..
T Consensus 184 ~~---~~~-~~~~P~g--~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt~--~~~--~~~~~~g~~Iy~~~~~--~~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVVLDD--TNVYYMDVNRDNAIVHVNINNPNPV-VLTE--ANI--EHYNVYGSLIFYQRGG--DNPALCV 250 (302)
T ss_dssp CS---CEE-EEEEEET--TEEEEEEGGGTTEEEEECSSSCCCE-ECSC--SCE--EEEEEETTEEEEEECS--SSCEEEE
T ss_pred CC---Ccc-ceeeecC--CEEEEEEcCCCcEEEEEECCCCCeE-EEeC--CCc--ceEEECCCEEEEEECC--CCcEEEE
Confidence 32 222 2344544 5665554433 4555555544432 2221 223 3478889998876421 2356777
Q ss_pred EeCCCC
Q 001176 569 WNESEG 574 (1132)
Q Consensus 569 wd~~~~ 574 (1132)
-++...
T Consensus 251 ~~~DG~ 256 (302)
T 3s25_A 251 VKNDGT 256 (302)
T ss_dssp EETTSC
T ss_pred EECCCC
Confidence 776643
No 348
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.76 E-value=0.85 Score=51.39 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=61.1
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccccee--eeeecc------ccCCeeEEEEcCC----CCEEEEEcC----
Q 001176 878 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKG------HQNRITGLAFSPT----LNALVSSGA---- 941 (1132)
Q Consensus 878 ~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~------h~~~V~~l~~spd----g~~l~s~~~---- 941 (1132)
-.....|+|.| +|+++++-...+.|++++..+++. +..+.. .......|+|+|| +.+.++-+.
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34567999999 888776544334788887655543 222221 2456779999995 444444332
Q ss_pred --------CCcEEEEECCCcc--ccc-ceeeeCCCCCCCCCCCceeEEECCCCcEEEEE
Q 001176 942 --------DAQLCMWSIDKWE--KLK-SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 989 (1132)
Q Consensus 942 --------D~~i~iwd~~~~~--~~~-~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 989 (1132)
...|.-+++.... ... ...+...... .......++|.|||.+.++.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~--~~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS--KDHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC--SSCCEEEEEECTTSCEEEEE
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC--CCCCCCeEeECCCCeEEEEE
Confidence 2346666554321 101 1122211110 01346899999999877773
No 349
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.53 E-value=0.94 Score=48.25 Aligned_cols=115 Identities=8% Similarity=-0.035 Sum_probs=68.4
Q ss_pred CeEEEEeCCCeEEEEEecCCCceeeeeeeecc-cCCEEEEEE--ecCCCcEEEEEE-cCCCcEEEEECCCCeEEEEecC-
Q 001176 418 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAF--AHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTFEG- 492 (1132)
Q Consensus 418 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~v~~v~~--s~d~~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~- 492 (1132)
..+++++.||.|.-.|..+|+..-. +... ..++....- .+.+.. .++.. +.||.|..+|..+|.....+.-
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~---~~~~~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWS---IEPENFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEE---ECGGGSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEE---ecCCccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 3677888889888888888765442 2211 112211100 011222 33333 6899999999988866544321
Q ss_pred ---CCCCeEEEEeeccC-------CccEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001176 493 ---HEAPVYSVCPHHKE-------SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 537 (1132)
Q Consensus 493 ---h~~~v~~i~~~~~~-------~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 537 (1132)
...++.. .-.|-- .+..+++|+.+|.+...|+.+++.+..+...
T Consensus 87 ~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 87 QLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 2222221 100111 3368899999999999999999998877654
No 350
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.23 E-value=0.063 Score=57.33 Aligned_cols=201 Identities=7% Similarity=-0.000 Sum_probs=104.3
Q ss_pred CeEEEEeCCCcEEEEEcccceeeeeeccc-cCCeeEEEE--cC-CCCEEEEE-cCCCcEEEEECCCcccccceeeeCCCC
Q 001176 892 NIIAIGMEDSSVQIYNVRVDEVKTKLKGH-QNRITGLAF--SP-TLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAG 966 (1132)
Q Consensus 892 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~--sp-dg~~l~s~-~~D~~i~iwd~~~~~~~~~~~~~~~~~ 966 (1132)
.++++++.||.|+-.|..+|+.+.+++.. ..++....- .+ ++..++.. +.||.|..++..+|...-...+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999888654 122222110 01 22333333 579999999988774322111111110
Q ss_pred CCCCCCCce---eEEE------CCCCcEEEEEeCCeEEEEeC-CCCceeecCCCCCCC----CCeEEEEEc-----cCCC
Q 001176 967 RQSPLVGET---KVQF------HNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALP----APISSAIYS-----CDGL 1027 (1132)
Q Consensus 967 ~~~~~~~v~---~~~~------s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~----~~i~~i~~s-----~dg~ 1027 (1132)
. .+.. .... +.+|..++.+.++.+...|. +++.+..+....... ....+.... ..+.
T Consensus 91 -~---SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 -T---SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp -T---CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred -c---cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 0 0011 0001 23444444478999999999 777777665432110 001111111 1245
Q ss_pred EEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcE-EEEeCCCCCCeEEEEeCCCcEEEEecCCCcccc
Q 001176 1028 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPL-VIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1104 (1132)
Q Consensus 1028 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~Dg~i~vW~~~~~~~~~ 1104 (1132)
.|+.+..+..+.+.+ .+|+ +..+....+.+.. ....+. ....+. |+.+ +.++.||.|.-.|..+|+..|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~----~~~~~~~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV----LDVPLALQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCT----TTHHHHTTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccc----ccccccccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677788888888777 5564 3222111111100 000000 000011 4555 457889999999999998888
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.22 E-value=6.4 Score=41.31 Aligned_cols=175 Identities=13% Similarity=0.085 Sum_probs=104.0
Q ss_pred EEEEeeCCCEEEEee--C-------------CeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEe--CC--Cc
Q 001176 842 CIALSKNDSYVMSAS--G-------------GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM--ED--SS 902 (1132)
Q Consensus 842 ~~~~s~dg~~la~~s--d-------------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~--~d--g~ 902 (1132)
+--++++|.+|+... + ..|+..+++..+...... . .+.+|++ ++..|+... .+ ..
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~--~~~~~s~-~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---D--PCIYASL-IGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---S--CEEEEEE-ETTEEEEEEESSSSCEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---C--CccEEEE-eCCEEEEEeecCCCCce
Confidence 345688999998876 2 257778877665322222 1 1236778 677777665 33 44
Q ss_pred EEEEEcccceeeeeeccccCCeeEEEEcCCCCEEEEEcC-CCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECC
Q 001176 903 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 981 (1132)
Q Consensus 903 v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~~~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 981 (1132)
|+.-++.. ....++..+.. .+|+++++.|.-.+. ..+|..-++.++... .+. .+. ....++|
T Consensus 131 Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~---~l~--~~~-------~~~~~~P 193 (302)
T 3s25_A 131 LYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA---LFY--DCN-------CYKPVVL 193 (302)
T ss_dssp EEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE---EEE--CSC-------EEEEEEE
T ss_pred EEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE---EEe--CCC-------ccceeee
Confidence 55555543 33444444432 456788888886654 577888888775532 121 111 1234669
Q ss_pred CCcEEEEEe--C-CeEEEEeCCCCceeecCCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEeCCCc
Q 001176 982 DQTHLLVVH--E-SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC--DGAIGVFDAETL 1046 (1132)
Q Consensus 982 dg~~l~~~~--d-~~v~vwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~--dg~i~vwd~~~~ 1046 (1132)
++.+|+.+. + ..|..-++.+.....+. ...+ ..|+|++++|+-++. .+.|..-+++..
T Consensus 194 ~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt-----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 194 DDTNVYYMDVNRDNAIVHVNINNPNPVVLT-----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEECSSSCCCEECS-----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred cCCEEEEEEcCCCcEEEEEECCCCCeEEEe-----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 999998853 2 35767777655544443 2234 347889998876532 356777777643
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.31 E-value=6.9 Score=40.58 Aligned_cols=222 Identities=13% Similarity=0.096 Sum_probs=114.6
Q ss_pred CeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeEEEEe
Q 001176 345 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 424 (1132)
Q Consensus 345 ~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 424 (1132)
.|..++-... +.++. . ||.|..|-......+.. +. .....|..|+...+-.. +. .
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~-------------p~------~~~~~i~~ia~G~~hs~-~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTM-------------PA------ATQSGVDAIAAGNYHSL-AL-K 79 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSC-------------CG------GGGSCCCEEEECSSEEE-EE-E
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCC-------------Cc------cCCCCEEEEEeCCCEEE-EE-E
Confidence 5666665544 33444 4 89999998765443321 00 01225666766544333 33 4
Q ss_pred CCCeEEEEEecCCCceeeeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEecCCCCCeEEEEeec
Q 001176 425 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 504 (1132)
Q Consensus 425 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~ 504 (1132)
||.|..|-.....++..... -...|..++...+- .+.-. ||.|+.|-....-.+..-......|..++...
T Consensus 80 -~G~v~~wG~n~~Gqlg~P~~---~~~~v~~ia~G~~h----s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~ 150 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVPAE---ARSGVDAIAAGAWA----SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV 150 (282)
T ss_dssp -TTEEEEEECCTTSTTCCCGG---GSSSEEEEEEETTE----EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS
T ss_pred -CCEEEEeeCCCCCCCCCCcc---cCCCeEEEECcCCE----EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc
Confidence 89999998765443321111 13467777765443 23334 89999997554221111111234566666422
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeecccc
Q 001176 505 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 584 (1132)
Q Consensus 505 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1132)
...++ -. ||.|..|-.......-.-......|..++...+...++ . ++.++.|-......+..-. ..
T Consensus 151 ---~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~p~-~~ 217 (282)
T 3qhy_B 151 ---YTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTVPT-EA 217 (282)
T ss_dssp ---SEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCCCG-GG
T ss_pred ---CEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCCCc-cc
Confidence 13333 33 79999997655433321111123566666544433332 2 5678888654322111111 11
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 001176 585 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1132)
...|..++..... .++-. ||.|+.|=...
T Consensus 218 ~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 218 LSGVSAIASGEWY--SLALK-NGKVIAWGSSR 246 (282)
T ss_dssp GSSCCEEEECSSC--EEEEE-TTEEEEESTTC
T ss_pred CCCceEEEcCCCE--EEEEE-CCEEEEecCCC
Confidence 1246666665443 33333 99999996654
No 353
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.77 E-value=6.3 Score=47.21 Aligned_cols=198 Identities=12% Similarity=0.114 Sum_probs=102.6
Q ss_pred eCCCEEEEee-C----CeEEEEECCCCeEEEEe-e-----CCC--CCeEEEEEeCCCCCeEEEEeCCC------cEEEEE
Q 001176 847 KNDSYVMSAS-G----GKVSLFNMMTFKVMTMF-M-----SPP--PAATFLAFHPQDNNIIAIGMEDS------SVQIYN 907 (1132)
Q Consensus 847 ~dg~~la~~s-d----g~i~vwd~~~~~~~~~~-~-----~~~--~~i~~l~~sp~~~~~lasg~~dg------~v~iwd 907 (1132)
.++..++.|+ + ..+.+||..+.+-...- . .+. ..-.++.+.. ++.+++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5677777776 3 35889998876433222 1 111 1233444433 567888887543 588899
Q ss_pred cccce--eeeeeccccCCeeEEEEcCCCCEEEEEcCCC--cEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCC-
Q 001176 908 VRVDE--VKTKLKGHQNRITGLAFSPTLNALVSSGADA--QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND- 982 (1132)
Q Consensus 908 ~~~~~--~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d- 982 (1132)
..+.+ .+..+......- +++...+++.++.||.++ .+.+||..+..= ..+........+......+.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W---~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIF---KDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEE---EECCCSSGGGGSCCBSCEEEEETTT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCce---EEccCCCCCCCcccceeEEEEeCCC
Confidence 88753 222222111111 222224788888888654 689999887541 111110000001122334565655
Q ss_pred CcEEEEE-e--C-----CeEEEEeCCCCc------eeecCCCCCCCCCeEEEEEccCCCEEEEEecC--------CcEEE
Q 001176 983 QTHLLVV-H--E-----SQISVYDSKLEC------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCD--------GAIGV 1040 (1132)
Q Consensus 983 g~~l~~~-~--d-----~~v~vwd~~~~~------~~~~~~~~~h~~~i~~i~~s~dg~~las~~~d--------g~i~v 1040 (1132)
++.++.| . + ..+.+||+.... .............-.+++...++++++.|+.+ ..|.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 6666664 2 2 358899983333 11111100001111123333447888888743 45999
Q ss_pred EeCCCccee
Q 001176 1041 FDAETLRFR 1049 (1132)
Q Consensus 1041 wd~~~~~~~ 1049 (1132)
||..+++-.
T Consensus 631 yd~~t~~W~ 639 (695)
T 2zwa_A 631 LDPLSETLT 639 (695)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 999987654
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.72 E-value=15 Score=41.07 Aligned_cols=109 Identities=13% Similarity=0.010 Sum_probs=58.9
Q ss_pred CeEEEEEcCCCC-eEEEEeCCCeEEEEEecCCCceeeeeeee---------cccCCEEEEEEecC---CCcEEEEEEc-C
Q 001176 407 SVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHP---NKQLCIVTCG-D 472 (1132)
Q Consensus 407 ~V~~v~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~v~~s~d---~~~~~l~s~~-~ 472 (1132)
..+.|+|.|||+ .|+++...|.|++++.+..........+. +.......|+|+|+ ...++++-.. .
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999996 56666789999999754321111111111 11456889999997 3332333221 1
Q ss_pred C----------CcEEEEECCC----------CeEEEEec--CCCCCeEEEEeeccCCccEEEEEecC
Q 001176 473 D----------KMIKVWDVVA----------GRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAID 517 (1132)
Q Consensus 473 d----------g~v~vwd~~~----------~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~d 517 (1132)
+ ..|.-|.+.. .+.+..+. .....-..|+|.|+ |.+.++.+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpD--G~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPD--GFLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTT--SCEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCC--CcEEEEeCCC
Confidence 1 1344455532 22333332 22234678888774 4666666543
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.61 E-value=14 Score=38.21 Aligned_cols=184 Identities=11% Similarity=0.026 Sum_probs=97.4
Q ss_pred CeeEEEEeeCCCEEEEeeCCeEEEEECCCCeEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeec
Q 001176 839 SAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK 918 (1132)
Q Consensus 839 ~v~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 918 (1132)
.|..++...+- .++. .||.|..|-....-.+..-..-...|..|+... .+.+.-+ ||.|+.|-....-.+..-.
T Consensus 64 ~i~~ia~G~~h-s~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYH-SLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSE-EEEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCE-EEEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 45555543332 2233 377787777543211111111124677787764 3444455 9999999765432222222
Q ss_pred cccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccccceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEe
Q 001176 919 GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD 998 (1132)
Q Consensus 919 ~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd 998 (1132)
.....|..++...+.. ++ .. ||.|..|-......+.... . . ...+..++...+... +. .++.|..|-
T Consensus 138 ~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg~p~-~--~-----~~~v~~i~~G~~hs~-al-~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTTVPA-E--A-----QSGVDDVAGGIFHSL-AL-KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTSCCG-G--G-----GSSEEEEEECSSEEE-EE-ETTEEEEEE
T ss_pred cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCCCce-e--c-----CCCeEEEEecCCEEE-EE-ECCeEEEEE
Confidence 2345677777654332 33 33 7999999876543322100 0 0 134566665554443 34 799999998
Q ss_pred C-CCCceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcc
Q 001176 999 S-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1047 (1132)
Q Consensus 999 ~-~~~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~ 1047 (1132)
. ....+..... ....|..++...+...+++ ||.|+.|-.....
T Consensus 205 ~n~~gqlg~p~~---~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~g 248 (282)
T 3qhy_B 205 DNRYKQTTVPTE---ALSGVSAIASGEWYSLALK---NGKVIAWGSSRTA 248 (282)
T ss_dssp CCTTSTTCCCGG---GGSSCCEEEECSSCEEEEE---TTEEEEESTTCCC
T ss_pred CCCCCCCCCCcc---cCCCceEEEcCCCEEEEEE---CCEEEEecCCCCc
Confidence 7 2222211111 1345777776555433333 9999999776543
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.61 E-value=25 Score=39.31 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=23.1
Q ss_pred ceEEEEEeCCCC-EEEEEEcCCeEEEEECC
Q 001176 587 SLGVVQFDTTRN-RFLAAGDEFQIKFWDMD 615 (1132)
Q Consensus 587 ~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 615 (1132)
....++|.|++. .++++...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 456799999996 56667788999999754
No 357
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.02 E-value=11 Score=44.99 Aligned_cols=196 Identities=12% Similarity=0.088 Sum_probs=100.9
Q ss_pred cCCCcEEEEEEcCC----CcEEEEECCCCeEEEEe-c-----CCCCC-eEEEEeeccCCccEEEEEecCC------eEEE
Q 001176 460 HPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTF-E-----GHEAP-VYSVCPHHKESIQFIFSTAIDG------KIKA 522 (1132)
Q Consensus 460 ~d~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~-~-----~h~~~-v~~i~~~~~~~~~~l~s~s~dg------~i~~ 522 (1132)
.++. +++.||.+ ..+.+||..+++....- . ..... -.+++.... ++.+++.|+.++ .+.+
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEE
Confidence 3455 56666643 46888898877644322 1 01111 112222210 336777776543 4777
Q ss_pred EEcCCCCceEEecCCCC-eEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCceeeeec-----cccCCceEEEEEeCC
Q 001176 523 WLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-----GFRKRSLGVVQFDTT 596 (1132)
Q Consensus 523 wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~ 596 (1132)
||..+..-...-..... .-.+++...+++.++.||.+..+ .+.+||..+.+....-. .... ...++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~-~~~a~v~~~~ 549 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSL-VSAGLEFDPV 549 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCC-BSCEEEEETT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCccc-ceeEEEEeCC
Confidence 88776433222111111 11223333478888888764433 79999998876433221 1111 1233555655
Q ss_pred -CCEEEEEEc--C-----CeEEEEECCCCe------eEEEEeCCCCCCCcceEEEcCCCCEEEEEeC--------CCcEE
Q 001176 597 -RNRFLAAGD--E-----FQIKFWDMDNMN------MLTTVDADGGLPASPRLRFNKEGSLLAVTTS--------DNGIK 654 (1132)
Q Consensus 597 -~~~l~~~~~--d-----g~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--------dg~i~ 654 (1132)
+..++.||. + ..+.+||+.+.. .............-.+++...++.+++.|+. ...+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 556666664 2 468999998876 2222111100001123333333777777774 34688
Q ss_pred EEEcCCc
Q 001176 655 ILANSDG 661 (1132)
Q Consensus 655 iw~~~~~ 661 (1132)
+||..+.
T Consensus 630 ~yd~~t~ 636 (695)
T 2zwa_A 630 SLDPLSE 636 (695)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 8888776
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.01 E-value=18 Score=38.96 Aligned_cols=172 Identities=10% Similarity=0.135 Sum_probs=93.5
Q ss_pred eEEEEECCCC--eEEEEeeCC------CCCeEEEEEe---CC--C-CCeEEEEe-CCCcEEEEEcccceeeeeec-----
Q 001176 859 KVSLFNMMTF--KVMTMFMSP------PPAATFLAFH---PQ--D-NNIIAIGM-EDSSVQIYNVRVDEVKTKLK----- 918 (1132)
Q Consensus 859 ~i~vwd~~~~--~~~~~~~~~------~~~i~~l~~s---p~--~-~~~lasg~-~dg~v~iwd~~~~~~~~~l~----- 918 (1132)
+|.+||+.+. +.++++.-+ ......+++. |. . +.++..+. ..+.|.|||+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5677888888 777776532 3447788887 21 1 23433333 45689999999886554431
Q ss_pred ---------cc----cCCeeEEEEcCC----CCEEEEEcCCCcEEEEECCCcccccce---eeeCCCCCCCCCCCceeEE
Q 001176 919 ---------GH----QNRITGLAFSPT----LNALVSSGADAQLCMWSIDKWEKLKSR---FIQAPAGRQSPLVGETKVQ 978 (1132)
Q Consensus 919 ---------~h----~~~V~~l~~spd----g~~l~s~~~D~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~ 978 (1132)
|. ...|..|++||+ +++|.-..-.+ -++|.+.+.-..... .++. .|...+...-...+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPEL-LGNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEE-EEECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEE-eeecCCCCCcceEE
Confidence 10 136888999998 67776655444 345555432111100 0000 01110001223456
Q ss_pred EC-CCCcEEEE-EeCCeEEEEeCCC-C----ceeecCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001176 979 FH-NDQTHLLV-VHESQISVYDSKL-E----CSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1033 (1132)
Q Consensus 979 ~s-~dg~~l~~-~~d~~v~vwd~~~-~----~~~~~~~~~~h~~~i~~i~~s~dg~~las~~ 1033 (1132)
+. .+|..+++ .....|..|+..+ . ....+.... .-.....+.+.++|.+.++.+
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEEC
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEEC
Confidence 75 56766666 4778999999855 2 222222111 234567777777776555543
No 359
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=87.85 E-value=51 Score=39.16 Aligned_cols=250 Identities=8% Similarity=0.006 Sum_probs=124.2
Q ss_pred eeEEE-EccCCCeEEEEEcC----CCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCCCCeE
Q 001176 346 VMSMD-FHPQQQTILLVGTN----VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 420 (1132)
Q Consensus 346 V~~~~-~spdg~~lla~g~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 420 (1132)
...+. ++||+++++++-|. -..++++|+.+++.+.. .|. ...+... + -......++|..++..+
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~k~~~------~---~~~~~~~~~W~d~~~~~ 199 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PITNSGK------L---LEGKFTYPTWINKDTII 199 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBCTTCC------B---CCEETCCEEEEETTEEE
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-ccccccc------c---cccccceeeEECCCEEE
Confidence 34455 88999876665443 34799999999986642 111 0000000 0 00011234676333333
Q ss_pred EEE----------eCCCeEEEEEecCCCceeeeeeeecccCCE-EEEEEecCCCc---EEEEEEcCC---CcEEEEECCC
Q 001176 421 GVA----------FSKHIVHLYTYNPTGELRQHLEIDAHVGGV-NDIAFAHPNKQ---LCIVTCGDD---KMIKVWDVVA 483 (1132)
Q Consensus 421 as~----------~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v-~~v~~s~d~~~---~~l~s~~~d---g~v~vwd~~~ 483 (1132)
++. +....|+.|.+-+...-. ...+.+....+ .....+++++. ..+++.+.+ ..+.+.|...
T Consensus 200 ~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 278 (711)
T 4hvt_A 200 FNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKY 278 (711)
T ss_dssp ECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSS
T ss_pred EEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCC
Confidence 321 123468888877643211 11233333332 34555677764 135554322 4556667553
Q ss_pred --CeEEEEecCCCCCeEEEEeeccCCccEEEEE----------ecCCeEEEEEcCCCC-------ceE-EecC-CCCeEE
Q 001176 484 --GRKQYTFEGHEAPVYSVCPHHKESIQFIFST----------AIDGKIKAWLYDYLG-------SRV-DYDA-PGNWCT 542 (1132)
Q Consensus 484 --~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~----------s~dg~i~~wd~~~~~-------~~~-~~~~-~~~~v~ 542 (1132)
++. ..+...... .+..+. ++.+++.. ...+.|...|+.... ... .+.. ....+.
T Consensus 279 ~~~~~-~~l~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (711)
T 4hvt_A 279 KNLKL-QKINMPSDA--TLQGSF--KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFN 353 (711)
T ss_dssp SSCEE-EECCSCTTC--EEEEEE--TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEE
T ss_pred CCCcc-eEeecCCcc--eEeeeE--CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEE
Confidence 432 333222211 111122 22444422 246778889987631 222 2332 344778
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEeCCCCc-eeee-eccccCCceEEEEEeCCCCEEEE-EE---cCCeEEEEECC
Q 001176 543 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRT-YSGFRKRSLGVVQFDTTRNRFLA-AG---DEFQIKFWDMD 615 (1132)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~-~~---~dg~i~iwd~~ 615 (1132)
.+.+..+ ..+++... ++...+.++|+.+++ .... +.....+.+....+.+++..++. .+ .-+.++.+|+.
T Consensus 354 ~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 354 FISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 8888876 44444433 345678899887764 2233 22221225666666677654443 33 44678888887
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.98 E-value=63 Score=40.02 Aligned_cols=40 Identities=20% Similarity=0.033 Sum_probs=34.8
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCC
Q 001176 1015 APISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1054 (1132)
Q Consensus 1015 ~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~ 1054 (1132)
..+.+++..++..+|++-+.|+++|+|++.+++++.....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 4577788888999999999999999999999999877653
No 361
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=83.78 E-value=72 Score=37.88 Aligned_cols=243 Identities=9% Similarity=0.038 Sum_probs=118.9
Q ss_pred EEEE-EcCCCCeEEEE-e----CCCeEEEEEecCCCceeeeeeee-cccC------CEEEEEEecCCCcEEEEEE-----
Q 001176 409 NRCV-WGPDGLMLGVA-F----SKHIVHLYTYNPTGELRQHLEID-AHVG------GVNDIAFAHPNKQLCIVTC----- 470 (1132)
Q Consensus 409 ~~v~-~spdg~~las~-~----~dg~i~iwd~~~~~~~~~~~~l~-~h~~------~v~~v~~s~d~~~~~l~s~----- 470 (1132)
..+. ++||+++++.+ | .-..++++|+.+++.+... +. .-+. ....++|..++. ++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~ 207 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKN 207 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCE--EEEEeCCCCC
Confidence 3455 88999988765 2 2236999999998654311 11 0000 113458874444 34432
Q ss_pred -----cCCCcEEEEECCCCe--EEEEecCCCCCeE-EEEeeccCCcc---EEEEEecC---CeEEEEEcCCCCc-eEEec
Q 001176 471 -----GDDKMIKVWDVVAGR--KQYTFEGHEAPVY-SVCPHHKESIQ---FIFSTAID---GKIKAWLYDYLGS-RVDYD 535 (1132)
Q Consensus 471 -----~~dg~v~vwd~~~~~--~~~~~~~h~~~v~-~i~~~~~~~~~---~l~s~s~d---g~i~~wd~~~~~~-~~~~~ 535 (1132)
+....|+.|.+-+.. -...+.+....+. +...+.++... .+++.+.+ ..+.+.|...... ...+.
T Consensus 208 ~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 287 (711)
T 4hvt_A 208 EITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKIN 287 (711)
T ss_dssp CBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECC
T ss_pred CcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEee
Confidence 123578888876542 2233444333332 23333333222 34544422 3455555543222 23333
Q ss_pred CCCCeEEEEEEcCCCCEEEEEecC------CCCCCeEEEEeCCCCc-------eeee-eccccCCceEEEEEeCCCCEEE
Q 001176 536 APGNWCTMMAYSADGTRLFSCGTS------KEGESHLVEWNESEGA-------IKRT-YSGFRKRSLGVVQFDTTRNRFL 601 (1132)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~~-------~~~~-~~~~~~~~v~~~~~~~~~~~l~ 601 (1132)
..... .+..+.++.+++....+ .-..+.|...|+.++. ..+. +.......+..+.+..+ ..++
T Consensus 288 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 288 MPSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp SCTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred cCCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 22221 12334555555533211 0136678899987642 1222 33333335777888865 4666
Q ss_pred EEEcCCe--EEEEECCCCe-eEEE-EeCCCCCCCcceEEEcCCCCEE-EEEeC---CCcEEEEEcC
Q 001176 602 AAGDEFQ--IKFWDMDNMN-MLTT-VDADGGLPASPRLRFNKEGSLL-AVTTS---DNGIKILANS 659 (1132)
Q Consensus 602 ~~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l-~~~~~---dg~i~iw~~~ 659 (1132)
+...++. ++++++.++. .... +..... ..+.....++++..+ ++.+. -+.+..+|+.
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6666664 6677776664 2223 333221 245555566665443 33332 2456666654
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=82.66 E-value=59 Score=35.33 Aligned_cols=261 Identities=12% Similarity=0.000 Sum_probs=118.3
Q ss_pred CCCeeEEEEee--CCCEEEEeeCC----eEEEEECCCCeEEEEee------C--------CCCCeEEEEEeCCC-CCeEE
Q 001176 837 EESAACIALSK--NDSYVMSASGG----KVSLFNMMTFKVMTMFM------S--------PPPAATFLAFHPQD-NNIIA 895 (1132)
Q Consensus 837 ~~~v~~~~~s~--dg~~la~~sdg----~i~vwd~~~~~~~~~~~------~--------~~~~i~~l~~sp~~-~~~la 895 (1132)
...|.+++++| ++.+.+.+..| .|...+ +.++.-..+. . ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 56666655554 343332 2232211111 1 11257789998733 44555
Q ss_pred EEeCCCcEEEEEcc--cceeeeeecc----------------ccCCeeEEEEcCC-CCEEEEEcCCCcEEEEECCCcccc
Q 001176 896 IGMEDSSVQIYNVR--VDEVKTKLKG----------------HQNRITGLAFSPT-LNALVSSGADAQLCMWSIDKWEKL 956 (1132)
Q Consensus 896 sg~~dg~v~iwd~~--~~~~~~~l~~----------------h~~~V~~l~~spd-g~~l~s~~~D~~i~iwd~~~~~~~ 956 (1132)
.++..+.|...+-. +.+.+..+.. ....|.+|.+.|. ...|..+..++.|...+ +.++.
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t- 210 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD- 210 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS-
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC-
Confidence 56556655554311 1122211110 1235788999873 33444443344344332 22211
Q ss_pred cceeeeC-CCC-CCC-----CCCCceeEEECCC-CcEEEEEeCCeEEEEeCCCCceeecCCCCCC--CCCeEEEEEcc-C
Q 001176 957 KSRFIQA-PAG-RQS-----PLVGETKVQFHND-QTHLLVVHESQISVYDSKLECSRSWSPKDAL--PAPISSAIYSC-D 1025 (1132)
Q Consensus 957 ~~~~~~~-~~~-~~~-----~~~~v~~~~~s~d-g~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h--~~~i~~i~~s~-d 1025 (1132)
...+.. ... ..+ ....+..+++.|+ ...|.++..+.|...+-.++....+...... ...+.+++++| +
T Consensus 211 -W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~ 289 (394)
T 3b7f_A 211 -WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRD 289 (394)
T ss_dssp -CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred -ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCCCCcceECCCCCCCCCccceEEEEECCCC
Confidence 001110 000 000 0124778899886 3556666566665555444433333211000 13467788876 3
Q ss_pred CCEEEEEec-----------CCcEEEEeCCC-cceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEE
Q 001176 1026 GLLVYAGFC-----------DGAIGVFDAET-LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVH 1093 (1132)
Q Consensus 1026 g~~las~~~-----------dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~ 1093 (1132)
...|.++.. ++...+|.... |+.-..+. ..+|....- .......++++|.++..|+.++.++.|
T Consensus 290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~-~~~~~~~~~~~p~~~~~l~~g~~~g~l- 365 (394)
T 3b7f_A 290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAW-LTVKRQAMTADAHAPVGVYFGTTGGEI- 365 (394)
T ss_dssp TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCC-CCCCTBSEEECCSSSCCEEEECTTSCE-
T ss_pred CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCcccc-ceEEEEEEEECCCCCCEEEEEeCCCeE-
Confidence 334444432 33345554443 33222221 111210000 001113577777666667777666654
Q ss_pred EEecCCCcccccC
Q 001176 1094 VVEPSDAELKWGG 1106 (1132)
Q Consensus 1094 vW~~~~~~~~~~~ 1106 (1132)
|.-..+...|..
T Consensus 366 -~~S~D~G~tW~~ 377 (394)
T 3b7f_A 366 -WASADEGEHWQC 377 (394)
T ss_dssp -EEESSTTSBCEE
T ss_pred -EEECCCCCCceE
Confidence 555555555654
No 363
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=80.82 E-value=68 Score=34.81 Aligned_cols=287 Identities=13% Similarity=0.120 Sum_probs=126.9
Q ss_pred cccccccccccCceeeeecCCCCCCCc--ceEEecCC---cccccceEEEEEecCCceEEeecccceeEEEeeccccCCC
Q 001176 731 VDVKPRVAEDVDKIKSWRIPDISDPSQ--IKALRLPD---SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 805 (1132)
Q Consensus 731 ~~~~~~~~~~~~~v~~w~~~~~~~~~~--~~~~~~~~---~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~ 805 (1132)
....+++...+|++..|=.+..-+-.. ......|. ......+..++ -.....++...+|.|..|=.......-
T Consensus 9 ~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~--~G~~~~~~l~~~G~v~~wG~n~~GqLG 86 (389)
T 3kci_A 9 SGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLI--GGEQTLFAVTADGKLYATGYGAGGRLG 86 (389)
T ss_dssp ------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEE--EETTEEEEEETTSCEEEEECCGGGTTS
T ss_pred CcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEE--eCCCeEEEEcCCCcEEEEECCCCCCCC
Confidence 344556667778888887665322110 00111111 00112344443 334556667778888888543322111
Q ss_pred CCccccccccccccCCCcCcccccCCCCCCCCCCeeEEEEeeCCCEEEEee-CCeEEEEECCCC-----------eEEEE
Q 001176 806 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF-----------KVMTM 873 (1132)
Q Consensus 806 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~~v~~~~~s~dg~~la~~s-dg~i~vwd~~~~-----------~~~~~ 873 (1132)
.+.......+ ..+.. + . ...+..++++......+.-. +|.|..|-.... .....
T Consensus 87 ~g~~~~~~~p--------~~v~~-~----~-~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 152 (389)
T 3kci_A 87 IGGTESVSTP--------TLLES-I----Q-HVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRV 152 (389)
T ss_dssp SSSSCCEEEE--------EECGG-G----T-TSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEE
T ss_pred CCCcCCccCC--------EEccc-c----c-CCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeE
Confidence 1110000000 00000 0 0 22344455554444443333 788888854321 11111
Q ss_pred eeC-CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc-e----------eeeeecc-ccCCeeEEEEcCCCCEEEEEc
Q 001176 874 FMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-E----------VKTKLKG-HQNRITGLAFSPTLNALVSSG 940 (1132)
Q Consensus 874 ~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~----------~~~~l~~-h~~~V~~l~~spdg~~l~s~~ 940 (1132)
+.. ....|..|+. +....+....||.|+.|-.... + ....+.. ....|..++......+.+...
T Consensus 153 v~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~ 229 (389)
T 3kci_A 153 IESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT 229 (389)
T ss_dssp CGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE
T ss_pred ecccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEc
Confidence 111 1235666665 4456666788999999975431 1 0111111 223566777654345666677
Q ss_pred CCCcEEEEECCCccccc---------ceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeCC-CCce------
Q 001176 941 ADAQLCMWSIDKWEKLK---------SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK-LECS------ 1004 (1132)
Q Consensus 941 ~D~~i~iwd~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~-~~~~------ 1004 (1132)
.|+.|..|-......+. ...+..+.+ ..+..++... ...++...++.|..|-.. ...+
T Consensus 230 ~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~-----~~v~~v~~G~-~hs~alt~~G~v~~wG~n~~GqLG~g~~~ 303 (389)
T 3kci_A 230 DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-----LGVVKVECGS-QFSVALTKSGAVYTWGKGDYHRLGHGSDD 303 (389)
T ss_dssp TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTT-----SCEEEEEEET-TEEEEEETTSCEEEEECCGGGTTCSSSCC
T ss_pred cCCEEEEEeCCCCCCCCCCCCCCccccEEecccCC-----CcEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCCCCCCCCc
Confidence 89999999765422211 011111111 1233333222 223344678889999761 1111
Q ss_pred -----eecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001176 1005 -----RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1046 (1132)
Q Consensus 1005 -----~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~ 1046 (1132)
..+.... ...|..|+... .+.++...||.|+.|-....
T Consensus 304 ~~~~P~~v~~l~--~~~v~~ia~G~--~h~~al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 304 HVRRPRQVQGLQ--GKKVIAIATGS--LHCVCCTEDGEVYTWGDNDE 346 (389)
T ss_dssp CEEEEEECGGGT--TCCEEEEEECS--SEEEEEETTCCEEEEECCTT
T ss_pred cccCCeEeccCC--CCCEEEEEecc--CeEEEECCCCCEEEeeCCCC
Confidence 0111001 23566665533 34455578999999987653
No 364
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=74.32 E-value=99 Score=33.22 Aligned_cols=166 Identities=11% Similarity=0.081 Sum_probs=89.6
Q ss_pred cEEEEECCCC--eEEEEecC------CCCCeEEEEee-cc-----CCccEEEEEecCCeEEEEEcCCCCceEEec----C
Q 001176 475 MIKVWDVVAG--RKQYTFEG------HEAPVYSVCPH-HK-----ESIQFIFSTAIDGKIKAWLYDYLGSRVDYD----A 536 (1132)
Q Consensus 475 ~v~vwd~~~~--~~~~~~~~------h~~~v~~i~~~-~~-----~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~----~ 536 (1132)
.|.+||+.++ +.++++.- ....+..+++. .. .++...++=+..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5677888888 87776542 23457788877 21 123334444567889999998766544331 1
Q ss_pred C--------------CCeEEEEEEcCC----CCEEEEEecCCCCCCeEEEEeCC-----CCceeee--eccccC--CceE
Q 001176 537 P--------------GNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEWNES-----EGAIKRT--YSGFRK--RSLG 589 (1132)
Q Consensus 537 ~--------------~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~-----~~~~~~~--~~~~~~--~~v~ 589 (1132)
. ...+..++++|+ ++.|....... -++|.+. ....... ..+... ..-.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-----~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~ 278 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-----IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAI 278 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-----SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-----CcEEEEEHHHhhCcchhhceEEeeecCCCCCcc
Confidence 1 136788899998 77777665421 2333332 1111111 111111 1233
Q ss_pred EEEEe-CCCCEEEEEEcCCeEEEEECCC-C---eeEEEEeCCCCCCCcceEEEcCCCCEEE
Q 001176 590 VVQFD-TTRNRFLAAGDEFQIKFWDMDN-M---NMLTTVDADGGLPASPRLRFNKEGSLLA 645 (1132)
Q Consensus 590 ~~~~~-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1132)
..++. .+|..+++--+...|..|+..+ . +....+........+..+.+..+|.+.+
T Consensus 279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv 339 (381)
T 3q6k_A 279 ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWF 339 (381)
T ss_dssp EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEE
T ss_pred eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEE
Confidence 45665 4565555556888999999875 1 2223332222333445566555554333
No 365
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=72.47 E-value=1.1e+02 Score=33.03 Aligned_cols=237 Identities=8% Similarity=-0.002 Sum_probs=108.0
Q ss_pred CcCeEEEEEcC--CCCeEEEEeCCCe--EEEEEe-cCCCceeeeee---eec--------ccCCEEEEEEecC--CCcEE
Q 001176 405 AISVNRCVWGP--DGLMLGVAFSKHI--VHLYTY-NPTGELRQHLE---IDA--------HVGGVNDIAFAHP--NKQLC 466 (1132)
Q Consensus 405 ~~~V~~v~~sp--dg~~las~~~dg~--i~iwd~-~~~~~~~~~~~---l~~--------h~~~v~~v~~s~d--~~~~~ 466 (1132)
...|.+|++.| ++.+.| ++..|. -.||-. +.++....... +.. +...|.++++.|. .. .
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~--~ 130 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG--T 130 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--C
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--E
Confidence 34699999998 444444 444440 123333 33433322111 111 1125778999873 33 3
Q ss_pred EEEEcCCCcEEEEECCCCeEEEEecC-------------------CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcCC
Q 001176 467 IVTCGDDKMIKVWDVVAGRKQYTFEG-------------------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 527 (1132)
Q Consensus 467 l~s~~~dg~v~vwd~~~~~~~~~~~~-------------------h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~~ 527 (1132)
++.++..+.|...+ ..|+.-..+.. ....+.+|.++|...+. +..+..++.|... ..
T Consensus 131 l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~-l~vg~~~ggl~~s--~D 206 (394)
T 3b7f_A 131 WYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKH-LYIGMSSGGVFES--TD 206 (394)
T ss_dssp EEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTC-EEEEEETBEEEEE--SS
T ss_pred EEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCE-EEEEECCCCEEEE--CC
Confidence 55555555554443 33333222211 12357788887754333 4444444443332 33
Q ss_pred CCceEE-ecC--C-----------CCeEEEEEEcCC-CCEEEEEecCCCCCCeEEEEeCCCCceeeeecc-ccC---Cce
Q 001176 528 LGSRVD-YDA--P-----------GNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG-FRK---RSL 588 (1132)
Q Consensus 528 ~~~~~~-~~~--~-----------~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~---~~v 588 (1132)
...... +.. . ...+.++++.|+ ...|+++.. +.|+..+- .++.-..+.. ... ..+
T Consensus 207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-----~gl~~s~D-~G~tW~~~~~~l~~~~~~~~ 280 (394)
T 3b7f_A 207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-----CGIYRMDR-REGVWKRIGDAMPREVGDIG 280 (394)
T ss_dssp TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-----TEEEEEET-TTTEEECGGGGSCTTTCSCE
T ss_pred CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-----CeEEEeCC-CCCcceECCCCCCCCCccce
Confidence 222221 110 0 134889999886 355655542 22544442 2332222221 111 135
Q ss_pred EEEEEeCC-CCEEEEEEc-----------CCeEEEEECCC-CeeEEEEeC--CCCC--C--CcceEEEcC-CCCEEEEEe
Q 001176 589 GVVQFDTT-RNRFLAAGD-----------EFQIKFWDMDN-MNMLTTVDA--DGGL--P--ASPRLRFNK-EGSLLAVTT 648 (1132)
Q Consensus 589 ~~~~~~~~-~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~--~~~~--~--~v~~~~~s~-~~~~l~~~~ 648 (1132)
.+++++|. ...++++.. ++...+|...+ ++.-..+.. .... . ....++++| +...|+.++
T Consensus 281 ~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~ 360 (394)
T 3b7f_A 281 FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGT 360 (394)
T ss_dssp EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEEC
T ss_pred EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEe
Confidence 66778763 344555432 23344554443 343333321 1100 0 123688887 345566676
Q ss_pred CCCcEE
Q 001176 649 SDNGIK 654 (1132)
Q Consensus 649 ~dg~i~ 654 (1132)
.++.|.
T Consensus 361 ~~g~l~ 366 (394)
T 3b7f_A 361 TGGEIW 366 (394)
T ss_dssp TTSCEE
T ss_pred CCCeEE
Confidence 665544
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.85 E-value=1.6e+02 Score=36.50 Aligned_cols=37 Identities=8% Similarity=0.221 Sum_probs=32.0
Q ss_pred CeEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeee
Q 001176 880 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 917 (1132)
Q Consensus 880 ~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 917 (1132)
.+.+++..+ +..++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 467777777 7789999999999999999999988764
No 367
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=62.92 E-value=1.4e+02 Score=30.46 Aligned_cols=207 Identities=10% Similarity=0.036 Sum_probs=111.1
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEE---EEcccceeeeeeccccCCeeEEEEcC--CCCEEEEEcCCCcEEEEECCCc
Q 001176 879 PAATFLAFHPQDNNIIAIGMEDSSVQI---YNVRVDEVKTKLKGHQNRITGLAFSP--TLNALVSSGADAQLCMWSIDKW 953 (1132)
Q Consensus 879 ~~i~~l~~sp~~~~~lasg~~dg~v~i---wd~~~~~~~~~l~~h~~~V~~l~~sp--dg~~l~s~~~D~~i~iwd~~~~ 953 (1132)
+.+..+.... ....|+.-+.+|.++- |++..+.....+. ....|.++.. + +...++..+.+|.++-..+...
T Consensus 24 D~~~~~~~~~-t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 24 APVVNILRVP-FTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCEEEEEEEE-TTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CeEEEEEEEC-CCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 3444444444 3456666777777664 4444332111132 3456776654 4 4678999999999999988764
Q ss_pred ccccceeeeCCCCCCCCCCCceeEEECCCCc-EEEEEeCCeEEEEeC-CCCc-------eeecCCCCCCCCCeEEEEEcc
Q 001176 954 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQT-HLLVVHESQISVYDS-KLEC-------SRSWSPKDALPAPISSAIYSC 1024 (1132)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~d~~v~vwd~-~~~~-------~~~~~~~~~h~~~i~~i~~s~ 1024 (1132)
. ....-..... ....+.+..+....+.. .++.++.|.+..+.. .-.. ...+.... ...|.++...+
T Consensus 101 ~-~~~~G~~~i~--lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~--~d~vv~~~~~~ 175 (276)
T 3no0_A 101 E-YKAQGMPIIK--LTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK--NDETSGLRIWN 175 (276)
T ss_dssp T-TCSTTEECSC--CCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEEEES
T ss_pred h-hhcCCeEEEe--cCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC--CCEEEEEEEeC
Confidence 3 1110011100 00113455555544444 444478888877765 1111 11111111 45677777667
Q ss_pred CCCEEEEEecCCcEEEEeCCCcceecccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEE--EecCC
Q 001176 1025 DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHV--VEPSD 1099 (1132)
Q Consensus 1025 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~v--W~~~~ 1099 (1132)
++..|+..+..|.++...+..-....+-... . ... .....+..+.... ++..++..+.+|.+.. ++.+.
T Consensus 176 ~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkG--v--~~i-~~~~~lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 176 GEPYLLVITAKGRVKKISHEEIPKTNRGVKG--T--EVS-GTKDTLVDLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SCSEEEEEETTSCEEEEEGGGSCCCCTTCCC--E--ECC-CSSSCEEEEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCCEEEEEeCCCcEEEeEHHHcccCCCCCcc--e--EEE-cCCCcEEEEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 7778889999999999987654433221100 0 000 1223444443333 3446666778888877 76643
No 368
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=62.19 E-value=1.6e+02 Score=30.91 Aligned_cols=113 Identities=11% Similarity=0.096 Sum_probs=70.8
Q ss_pred CCCeeEEEEee---CCCEEEEee-CCeEEEEECCCCeE-------EEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 001176 837 EESAACIALSK---NDSYVMSAS-GGKVSLFNMMTFKV-------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 905 (1132)
Q Consensus 837 ~~~v~~~~~s~---dg~~la~~s-dg~i~vwd~~~~~~-------~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~i 905 (1132)
...|.++..-+ +..+++..+ +|.|+-..+..... ...++. .+.+..+.... ....|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 45565554433 467788887 89999888654322 122332 34555555555 5567888899999888
Q ss_pred EEcc--cc---------eeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCC
Q 001176 906 YNVR--VD---------EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952 (1132)
Q Consensus 906 wd~~--~~---------~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~ 952 (1132)
+.+. .- ...-.+. ....|.++...+++..++.++..|.++.-.+..
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 8766 21 1111222 344577776666667888888888888777654
No 369
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=57.17 E-value=1.7e+02 Score=29.72 Aligned_cols=113 Identities=17% Similarity=0.143 Sum_probs=73.5
Q ss_pred CCCeeEEEEee--CCCEEEEee-CCeEEEEECCCCe------EEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEE
Q 001176 837 EESAACIALSK--NDSYVMSAS-GGKVSLFNMMTFK------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 907 (1132)
Q Consensus 837 ~~~v~~~~~s~--dg~~la~~s-dg~i~vwd~~~~~------~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd 907 (1132)
...|..+.. + +..+++..+ +|.++-..+.... ....++ ..+.+..+.... +...|+..+..|.+..+.
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFS 143 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEE
Confidence 556666644 4 466777777 8999988875532 112233 234566665555 556788899999998887
Q ss_pred cccc---------eeeeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCc
Q 001176 908 VRVD---------EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 953 (1132)
Q Consensus 908 ~~~~---------~~~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~ 953 (1132)
...- .....+. ..+.|.++...+++..++..+..|.++...+...
T Consensus 144 ~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 144 VREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp GGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred hhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 6431 1112233 2356767666666778899999999998887653
No 370
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=50.00 E-value=2.6e+02 Score=29.77 Aligned_cols=192 Identities=10% Similarity=0.011 Sum_probs=107.6
Q ss_pred eCCCEEEEee-CCeEEEEECCCC---------eEEEEeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc------
Q 001176 847 KNDSYVMSAS-GGKVSLFNMMTF---------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV------ 910 (1132)
Q Consensus 847 ~dg~~la~~s-dg~i~vwd~~~~---------~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~------ 910 (1132)
|+..++++.+ +|.|+--.+... ..-..++ ..+.+..+.... ....|+..+..|.++-+....
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 5667777777 888887654321 1122233 345666666665 567777788889877665432
Q ss_pred ---ceeeee---eccccCCeeEEEEcC---CCCEEEEEcCCCcEEEEECCCccccc---ceeeeCCCCCCCCCCCceeEE
Q 001176 911 ---DEVKTK---LKGHQNRITGLAFSP---TLNALVSSGADAQLCMWSIDKWEKLK---SRFIQAPAGRQSPLVGETKVQ 978 (1132)
Q Consensus 911 ---~~~~~~---l~~h~~~V~~l~~sp---dg~~l~s~~~D~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~ 978 (1132)
|..+.. +. ....|.++..-. ++.+|+.++..|.++...+....... ...+. +.. .+.+..+.
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~-L~~----~d~lv~v~ 156 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAIN-LDE----GDALVGVA 156 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSC-CCT----TCCEEEEE
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEE-eCC----CCEEEEEE
Confidence 222211 22 334566655432 45689999999999999876543211 11111 111 13344444
Q ss_pred ECC-CCcEEEEEeCCeEEEEeC-CCCc-------eeecCCCCCCCCCeEEEEEcc-------------------------
Q 001176 979 FHN-DQTHLLVVHESQISVYDS-KLEC-------SRSWSPKDALPAPISSAIYSC------------------------- 1024 (1132)
Q Consensus 979 ~s~-dg~~l~~~~d~~v~vwd~-~~~~-------~~~~~~~~~h~~~i~~i~~s~------------------------- 1024 (1132)
... +...++++..|.+..+.. .-.. .+.+.... ...|.++...+
T Consensus 157 ~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~--~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~ 234 (370)
T 3l6v_A 157 LTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAK--GEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAE 234 (370)
T ss_dssp EECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEEEECCC-----------------------
T ss_pred EeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCC--CCEEEEEEEecccccccccccccccccccccccccc
Confidence 433 344555577888777765 1111 11111111 45666666554
Q ss_pred ----------CCCEEEEEecCCcEEEEeCCCcce
Q 001176 1025 ----------DGLLVYAGFCDGAIGVFDAETLRF 1048 (1132)
Q Consensus 1025 ----------dg~~las~~~dg~i~vwd~~~~~~ 1048 (1132)
++..|++.+..|..+...+..-..
T Consensus 235 ~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~ 268 (370)
T 3l6v_A 235 PAVIDVADNGDVAYILTATENGYGKRTPLAEYPR 268 (370)
T ss_dssp ------------CEEEEEETTSEEEEEEGGGSCC
T ss_pred ccccccccccCCceEEEeeCCCCEEEEEHHHhcc
Confidence 456888999999999988765444
No 371
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=48.04 E-value=9.5 Score=48.69 Aligned_cols=41 Identities=22% Similarity=0.050 Sum_probs=34.1
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCCC
Q 001176 1015 APISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1055 (1132)
Q Consensus 1015 ~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~ 1055 (1132)
..+.+++..++..+|++-+.|+++|||++.+++++......
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 34556677788999999999999999999999998776543
No 372
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=47.84 E-value=71 Score=27.65 Aligned_cols=97 Identities=8% Similarity=0.007 Sum_probs=51.6
Q ss_pred hhhhccHHHHHHHHHHHcCCCcc-H----HHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHHHHHHHHhcCC
Q 001176 15 FLDEEKFKETVHKLEQESGFFFN-M----KHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQD 89 (1132)
Q Consensus 15 ~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~ 89 (1132)
+++..-|.++.+.+++=-.+..+ . ..=.-....|+|++|+..+.+.....+.. .. + +-..=.=+...|+
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~-a----~~~lg~~~~~~~~ 96 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IK-G----YIRKAACLVAMRE 96 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-H----HHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hH-H----HHHHHHHHHHCCC
Confidence 44455577887777654333332 1 11123455688888888877654443222 11 1 1112222456788
Q ss_pred HHHHHHHHHhhcccccccCHHHHHHHHHh
Q 001176 90 RAKAVEILVKDLKVFSSFNEELFKEITQL 118 (1132)
Q Consensus 90 ~~~A~~~l~~~~~~~~~~~~~~~~~l~~l 118 (1132)
.++|+..+++-+. +...+.+-...|..+
T Consensus 97 ~~~A~~~~~~al~-l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 97 WSKAQRAYEDALQ-VDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHHH-HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HCcCCHHHHHHHHHh
Confidence 8888888887544 222244444455444
No 373
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=44.54 E-value=28 Score=40.68 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=29.8
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCC
Q 001176 1016 PISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1054 (1132)
Q Consensus 1016 ~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~ 1054 (1132)
.|.++. .+..+|++-+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~--~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKL--FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEec--cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 355444 4578999999999999999999998876654
No 374
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=41.76 E-value=3.6e+02 Score=28.91 Aligned_cols=206 Identities=11% Similarity=0.074 Sum_probs=108.0
Q ss_pred CeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc-e----------eeeeeccc-cCCeeEEEEcCCCCEEEEEcCCCcEEE
Q 001176 880 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-E----------VKTKLKGH-QNRITGLAFSPTLNALVSSGADAQLCM 947 (1132)
Q Consensus 880 ~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~----------~~~~l~~h-~~~V~~l~~spdg~~l~s~~~D~~i~i 947 (1132)
.+..++++. +..+.+.-+.||.|+.|-.... + ....+..- ...|..++.. ..+.+....||.|+.
T Consensus 106 ~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred ceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence 456677777 6777777889999999965421 1 11112211 2256666653 445556667999999
Q ss_pred EECCCcccc---------cceeeeCCCCCCCCCCCceeEEECC-CCcEEEEEeCCeEEEEeCC-CCce-----------e
Q 001176 948 WSIDKWEKL---------KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVVHESQISVYDSK-LECS-----------R 1005 (1132)
Q Consensus 948 wd~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~d~~v~vwd~~-~~~~-----------~ 1005 (1132)
|-......+ ....+....+ ..+..++... +...++...++.|..|-.. ...+ .
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~-----~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~ 257 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQG-----HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPM 257 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTT-----SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEE
T ss_pred eCCCCCCCcCCCCCcccccceEecccCC-----CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccE
Confidence 976442211 1111111111 2355565544 3344555789999999751 1110 0
Q ss_pred ecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCC-CccccccccCCCCCCcEEEEeCCCCCCeEE
Q 001176 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP-SAYIPTYAVSSNTAHPLVIAPHPSEPNQIA 1084 (1132)
Q Consensus 1006 ~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 1084 (1132)
...... ...|..++...+ +.++-..||.|+.|-....-.+..-.. ....|..+..-....+..++. +....+
T Consensus 258 ~v~~~~--~~~v~~v~~G~~--hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~---G~~h~~ 330 (389)
T 3kci_A 258 KIDSLT--GLGVVKVECGSQ--FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT---GSLHCV 330 (389)
T ss_dssp ECGGGT--TSCEEEEEEETT--EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEE
T ss_pred EecccC--CCcEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe---ccCeEE
Confidence 111000 234666655433 444456899999997754322211000 001121111112234555554 345556
Q ss_pred EEeCCCcEEEEecCCC
Q 001176 1085 LGMSDGAVHVVEPSDA 1100 (1132)
Q Consensus 1085 s~~~Dg~i~vW~~~~~ 1100 (1132)
.-..||+|..|-.+..
T Consensus 331 al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 331 CCTEDGEVYTWGDNDE 346 (389)
T ss_dssp EEETTCCEEEEECCTT
T ss_pred EECCCCCEEEeeCCCC
Confidence 6688999999998653
No 375
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=41.64 E-value=3.1e+02 Score=28.24 Aligned_cols=192 Identities=12% Similarity=0.071 Sum_probs=95.7
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCceee------eeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEEC---CC--
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQ------HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV---VA-- 483 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~~------~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~---~~-- 483 (1132)
|+...+++.+.+|.|+--.+..-+..+. ...+..+ +.+..+....... .|+..+..|.++-... ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~--~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHD--HILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCC--EEEEEECCCEEEEEEhhHCcCCC
Confidence 3456778888999888766543211110 0012222 2343444444444 3555556776555443 22
Q ss_pred ----CeEEE---EecCCCCCeEEEEeec-cCCccEEEEEecCCeEEEEEcCCCC-----ceE--EecCCCCeEEEEEEcC
Q 001176 484 ----GRKQY---TFEGHEAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLG-----SRV--DYDAPGNWCTMMAYSA 548 (1132)
Q Consensus 484 ----~~~~~---~~~~h~~~v~~i~~~~-~~~~~~l~s~s~dg~i~~wd~~~~~-----~~~--~~~~~~~~v~~~~~s~ 548 (1132)
|..+. .+. ....|.++.... ..+..+++..+.+|.++--.+.... ... .+... ..+..+....
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC
Confidence 22211 122 234566654322 1234689999999999998764221 111 12222 4444444444
Q ss_pred CCCEEEEEecCCCCCCeEEEEeCCCCc-------eeeeeccccCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 001176 549 DGTRLFSCGTSKEGESHLVEWNESEGA-------IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 615 (1132)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~~wd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1132)
+...++..+. .|.+..++...-. -+..+.-..+..|.++....++..+++.+..|.++-.++.
T Consensus 156 ~~~~i~l~T~----~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 156 GEDEVMLFSA----EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp TTCEEEEEET----TSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CCCEEEEECC----CCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 4445555543 6667777664211 1111222222245555544555678888899998888764
No 376
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=41.48 E-value=20 Score=31.69 Aligned_cols=90 Identities=18% Similarity=0.217 Sum_probs=51.0
Q ss_pred CcchHHHHHHHHHhhhhccH-HHHHHHHHHHcCCCccHHHHHHHHhcccHHHHHHHhcCCCcc--ccccchhhHH-----
Q 001176 2 SSLSRELVFLILQFLDEEKF-KETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGFTKV--EDNRYSMKIF----- 73 (1132)
Q Consensus 2 ~~~~~e~~~li~q~L~~~g~-~~s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~--~~~~~~~~~~----- 73 (1132)
+-..+++...|+..|.+.|| +.+.+.+-++.|+..+ +...|+..++.+... -...+..-++
T Consensus 18 ~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~ 86 (130)
T 2k9m_A 18 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEE 86 (130)
T ss_dssp CSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhc
Confidence 34457789999999999997 4556666666665442 234455555555322 1112222111
Q ss_pred -----HHHHHHHHHH-HHhcCCH-HHHHHHHHhhcccc
Q 001176 74 -----FEIRKQKYLE-ALDRQDR-AKAVEILVKDLKVF 104 (1132)
Q Consensus 74 -----~~i~~~~~lE-ll~~~~~-~~A~~~l~~~~~~~ 104 (1132)
..|. ..+|| +|.++++ .+|+.++| .|.|.
T Consensus 87 ~~~~a~~ii-~~~l~~~la~~~~~~~~~~~Ir-~L~P~ 122 (130)
T 2k9m_A 87 IYPEEEEIL-KKALRDLKRGKKLKPEIKGKLS-RLRLF 122 (130)
T ss_dssp SCSTTHHHH-HHHHHHHHHSCCCCHHHHHHHH-TCCSC
T ss_pred CchhHHHHH-HHhHHHHHHcCCHHHHHHHHHH-cCCCC
Confidence 1122 25677 7777774 45777776 55554
No 377
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=40.40 E-value=1.6e+02 Score=24.78 Aligned_cols=90 Identities=9% Similarity=-0.035 Sum_probs=51.3
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHcCCCcc-----HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHHHH
Q 001176 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN-----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKY 81 (1132)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1132)
....+-..++...-|.++...+++=.....+ ...-.-....|+|++|+.++.+........ . .+.+.+ -
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~-~~~~~l----a 91 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-I-KGYTRK----A 91 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-H-HHHHHH----H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-h-HHHHHH----H
Confidence 3445555556666688888877775554433 112223456789999988887654432221 1 121111 1
Q ss_pred HHHHhcCCHHHHHHHHHhhcc
Q 001176 82 LEALDRQDRAKAVEILVKDLK 102 (1132)
Q Consensus 82 lEll~~~~~~~A~~~l~~~~~ 102 (1132)
.-+...++.++|+..+++-+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 124567888999888886543
No 378
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=39.15 E-value=25 Score=27.95 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHcCCC
Q 001176 7 ELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1132)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1132)
-+.-||-.||.=.||+-|..+++-|||..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 36789999999999999999999999985
No 379
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=38.99 E-value=3.5e+02 Score=28.10 Aligned_cols=194 Identities=9% Similarity=0.046 Sum_probs=99.4
Q ss_pred CCCCeEEEEeCCCeEEEEEecCCCcee-eeeeeecccCCEEEEEEecCCCcEEEEEEcCCCcEEEEEC---C------CC
Q 001176 415 PDGLMLGVAFSKHIVHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV---V------AG 484 (1132)
Q Consensus 415 pdg~~las~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~---~------~~ 484 (1132)
|+...+++.+.+|.|+--.+..-+... ....+... +.+..+....... .|+..+..|.++-... . .|
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d--~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKD--VLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTS--EEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCC--EEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 456678888999998877654210000 00013322 3444444444444 4555666777665543 2 23
Q ss_pred eEEEE---ecCCCCCeEEEEeecc-CCccEEEEEecCCeEEEEEcCCC------CceEEecC-CCCeEEEEEEcCCCCEE
Q 001176 485 RKQYT---FEGHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYL------GSRVDYDA-PGNWCTMMAYSADGTRL 553 (1132)
Q Consensus 485 ~~~~~---~~~h~~~v~~i~~~~~-~~~~~l~s~s~dg~i~~wd~~~~------~~~~~~~~-~~~~v~~~~~s~~~~~l 553 (1132)
.++.. +. ....|.++..... .+..+++.++.+|.++...+... .....+.. .+..+..+........+
T Consensus 80 ~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 80 QHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL 158 (323)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred cChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEE
Confidence 32211 21 2334655543322 22467999999999999876421 11222221 22444444444444555
Q ss_pred EEEecCCCCCCeEEEEeCCCC-------ceeeeeccccCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC
Q 001176 554 FSCGTSKEGESHLVEWNESEG-------AIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDN 616 (1132)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 616 (1132)
+..+. +|.+..++...- +-++.+.-..+..|.++...+++. .+++.+..|..+..++..
T Consensus 159 ~l~T~----~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 159 FLVTH----NGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEET----TSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEeC----CCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 55543 667777766421 112222222222455554444444 788888888888777643
No 380
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=38.28 E-value=1.1e+02 Score=32.12 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=18.6
Q ss_pred HHHHHHHHhcccH---HHHHHHhcCC
Q 001176 38 MKHFEDQVQAGEW---DEVERYLCGF 60 (1132)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~~ 60 (1132)
+.+|++.|.+|+| -+|.+.++.+
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi 41 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV 41 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH
Confidence 5789999999999 8887766444
No 381
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=37.64 E-value=98 Score=35.57 Aligned_cols=64 Identities=11% Similarity=0.178 Sum_probs=47.1
Q ss_pred eEEEEEEcCCCCEEEEEecC--------CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEE
Q 001176 540 WCTMMAYSADGTRLFSCGTS--------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 603 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~--------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1132)
..-.|+|+|.|++++.--.+ ..+...+.+.+..+++..+-+.+.....++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45678999999865543111 01245677788888888888888877789999999999887764
No 382
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=37.40 E-value=2.1e+02 Score=29.61 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=19.3
Q ss_pred HHHHHHHHhcccHHHHHHHhcCC
Q 001176 38 MKHFEDQVQAGEWDEVERYLCGF 60 (1132)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~ 60 (1132)
..+|++.|.+|+|-+|.+.++.+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl 39 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI 39 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH
Confidence 67899999999999998876544
No 383
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=36.38 E-value=5.5e+02 Score=30.04 Aligned_cols=36 Identities=6% Similarity=0.143 Sum_probs=29.2
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEEcccceeeeeecc
Q 001176 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 919 (1132)
Q Consensus 881 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 919 (1132)
|.++.+ +..+|++-+.|+++|+|++.+++++.+..-
T Consensus 224 Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 555555 457999999999999999999998877554
No 384
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=36.36 E-value=1.1e+02 Score=31.43 Aligned_cols=85 Identities=15% Similarity=0.019 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhhhhcc-HHHHHHHHHH--HcCCCcc---HHHH--HHHHhcccHHHHHHHhcCCCccccccchhhHHHHH
Q 001176 5 SRELVFLILQFLDEEK-FKETVHKLEQ--ESGFFFN---MKHF--EDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEI 76 (1132)
Q Consensus 5 ~~e~~~li~q~L~~~g-~~~s~~~L~~--Esg~~~~---~~~~--~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1132)
.-+.++++.+++...| +.++.+.|++ +.++..+ .... .-....|++++|+..+.+ +.. .. +.+.+
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~--~~-~~~~l 136 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDS--LE-CMAMT 136 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCS--HH-HHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCC--HH-HHHHH
Confidence 3456778888888887 7777788876 3333232 2111 334567888888888876 111 11 11111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhh
Q 001176 77 RKQKYLEALDRQDRAKAVEILVKD 100 (1132)
Q Consensus 77 ~~~~~lEll~~~~~~~A~~~l~~~ 100 (1132)
-+ =++..|+.++|+..|++-
T Consensus 137 -~~---~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 137 -VQ---ILLKLDRLDLARKELKKM 156 (291)
T ss_dssp -HH---HHHHTTCHHHHHHHHHHH
T ss_pred -HH---HHHHCCCHHHHHHHHHHH
Confidence 11 244567777777777754
No 385
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=34.69 E-value=6.6e+02 Score=29.99 Aligned_cols=158 Identities=13% Similarity=0.190 Sum_probs=74.6
Q ss_pred CCCeeEEEEccCCCeEEEEEcCCCcEEEEecCCCccccccceeeeecccccccccccccCCCCcCeEEEEEcCC-CCeEE
Q 001176 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLG 421 (1132)
Q Consensus 343 ~~~V~~~~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~la 421 (1132)
...|.+|+++|.....+.+++..+.|...+ +.|+. |..-.. ..... .-....|.+|++.|. ...+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~t--------W~~~~~--~~~~~--~~~~~~i~~ia~dp~~~~~i~ 80 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSK--------WIPLND--FIEAQ--DMNIMGTESIALDPNNPDRLY 80 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTE--------EEESCT--TCCGG--GGGGCSEEEEEEETTEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCC--------eeECcc--CCCcc--cccCCceeEEEECCCCCCEEE
Confidence 358999999997543466666667655443 22321 111000 00000 001346999999984 34444
Q ss_pred EEeCCCe----EEEE-EecCCCceeeeee-ee--c---ccCCEEEEEEecCCCcEEEEEEcCCCcEEEEEC-CCCeEEEE
Q 001176 422 VAFSKHI----VHLY-TYNPTGELRQHLE-ID--A---HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-VAGRKQYT 489 (1132)
Q Consensus 422 s~~~dg~----i~iw-d~~~~~~~~~~~~-l~--~---h~~~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~-~~~~~~~~ 489 (1132)
.+..+.. -.|| ..+.|+....... +. + ....+..+++.|.... .++.+...+.| |.- ..|+.-..
T Consensus 81 ~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~-~v~~g~~~~gl--~~S~DgG~TW~~ 157 (789)
T 1sqj_A 81 LAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSN-EVWMGTRTEGI--WKSSDRAKTWTN 157 (789)
T ss_dssp EEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEE-EEEEECSSSCE--EEESSTTSSCEE
T ss_pred EEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCC-EEEEEeccCCE--EEECCCCcccCC
Confidence 4432211 2344 3444443332211 00 0 0113567888886543 45556544433 322 23333222
Q ss_pred ecC------CCCCeEEEEeeccCCccEEEEEecC
Q 001176 490 FEG------HEAPVYSVCPHHKESIQFIFSTAID 517 (1132)
Q Consensus 490 ~~~------h~~~v~~i~~~~~~~~~~l~s~s~d 517 (1132)
+.. ....+..+.++|... ..++.+..+
T Consensus 158 ~~~~~~~~~~~~~~~~i~~~p~~~-~~~~~~~~~ 190 (789)
T 1sqj_A 158 VTSIPDAFTNGIGYTSVIFDPERN-GTIYASATA 190 (789)
T ss_dssp ETTSCCCCSTTTCEEEEEECTTST-TCEEEEESS
T ss_pred CccCccccCCCCCeEEEEECCCCC-CEEEEEEcC
Confidence 221 124577888887644 344455444
No 386
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=33.40 E-value=1.4e+02 Score=26.51 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCCcc--HHHH---HHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHHHHHHHHhcCCHHHHHH
Q 001176 21 FKETVHKLEQESGFFFN--MKHF---EDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVE 95 (1132)
Q Consensus 21 ~~~s~~~L~~Esg~~~~--~~~~---~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~ 95 (1132)
+.++...+++-.....+ ...| +-....|+|++|+.++.+.....+.. .. +.+. .-.-+...|+.++|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~~-a~~~----lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-PK-AHRF----LGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHH----HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HH-HHHH----HHHHHHHcCchHHHHH
Confidence 55666666665444333 1111 33567799999999998865554332 11 2222 2222456799999999
Q ss_pred HHHhhcccccccCHHHHHHHHHhhcc
Q 001176 96 ILVKDLKVFSSFNEELFKEITQLLTL 121 (1132)
Q Consensus 96 ~l~~~~~~~~~~~~~~~~~l~~l~~~ 121 (1132)
.+++-+. +...+.+-+..|+.++..
T Consensus 87 ~~~~al~-~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 87 CYRRSVE-LNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 9998654 223367777778776653
No 387
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.42 E-value=2.9e+02 Score=28.04 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=7.5
Q ss_pred hcCCHHHHHHHHHh
Q 001176 86 DRQDRAKAVEILVK 99 (1132)
Q Consensus 86 ~~~~~~~A~~~l~~ 99 (1132)
..|+.++|+..|++
T Consensus 113 ~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 113 YDQNPDAALRTLHQ 126 (291)
T ss_dssp HTTCHHHHHHHHTT
T ss_pred HCCCHHHHHHHHhC
Confidence 44555555555554
No 388
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=30.07 E-value=29 Score=27.97 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.6
Q ss_pred CCcchHHHHHHHHHhhhhc
Q 001176 1 MSSLSRELVFLILQFLDEE 19 (1132)
Q Consensus 1 ~~~~~~e~~~li~q~L~~~ 19 (1132)
|+..+++++..|+|||+..
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6778899999999999864
No 389
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=29.92 E-value=4.8e+02 Score=26.89 Aligned_cols=193 Identities=8% Similarity=0.066 Sum_probs=107.2
Q ss_pred eCCCEEEEee-CCeEEEEECCCCeEE-------E--EeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc------
Q 001176 847 KNDSYVMSAS-GGKVSLFNMMTFKVM-------T--MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV------ 910 (1132)
Q Consensus 847 ~dg~~la~~s-dg~i~vwd~~~~~~~-------~--~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~------ 910 (1132)
++..++++.+ +|.|+-..+...+.. . .++ ..+.+..+.... ....++..+..|.++-+....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 4555667676 788887766543221 1 122 234455555554 556777888999887776542
Q ss_pred ---ceee---eeeccccCCeeEEEEcC---CCCEEEEEcCCCcEEEEECCCccccc--ceeeeCCCCCCCCCCCceeEEE
Q 001176 911 ---DEVK---TKLKGHQNRITGLAFSP---TLNALVSSGADAQLCMWSIDKWEKLK--SRFIQAPAGRQSPLVGETKVQF 979 (1132)
Q Consensus 911 ---~~~~---~~l~~h~~~V~~l~~sp---dg~~l~s~~~D~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~ 979 (1132)
|..+ -.+. ....|.++...+ +..+|+..+..|.++...+....... ....-.+.. .+.+..+..
T Consensus 84 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~----~d~lv~~~~ 158 (312)
T 1suu_A 84 ASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND----KDFVTSAEI 158 (312)
T ss_dssp ----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT----TCCEEEEEE
T ss_pred cCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC----CCEEEEEEE
Confidence 1111 1122 233455554433 46788889999999988876532211 111111111 134444444
Q ss_pred -CCCCcEEEEEeCCeEEEEeC-CCCc-------eeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcce
Q 001176 980 -HNDQTHLLVVHESQISVYDS-KLEC-------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1048 (1132)
Q Consensus 980 -s~dg~~l~~~~d~~v~vwd~-~~~~-------~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~ 1048 (1132)
.++...++++.+|.+..+.. .-.. ...+.... ...|.++....++..|++.+..|..+..++..-..
T Consensus 159 ~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~--~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~ 234 (312)
T 1suu_A 159 VFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE--GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISE 234 (312)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT--TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCB
T ss_pred eCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC--CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcc
Confidence 44445555688888888876 2111 11111111 45677776666677788889999999998865433
No 390
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=29.62 E-value=1.1e+02 Score=38.89 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=31.2
Q ss_pred CEEEEEEecCCCcEEEEEEcCCCcEEEEECCCCeEEEEec
Q 001176 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 491 (1132)
Q Consensus 452 ~v~~v~~s~d~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 491 (1132)
.+.+++..++.. ++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~--~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYN--VLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTT--EEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCcc--EEEEEeCCCEEEEEECCCCCeEEeec
Confidence 445566677777 88999999999999999999987653
No 391
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=29.53 E-value=4.8e+02 Score=26.79 Aligned_cols=239 Identities=12% Similarity=0.085 Sum_probs=122.0
Q ss_pred CCCEEEEee-CCeEEEEECCCCeEEE---------EeeCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEEccc-------
Q 001176 848 NDSYVMSAS-GGKVSLFNMMTFKVMT---------MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV------- 910 (1132)
Q Consensus 848 dg~~la~~s-dg~i~vwd~~~~~~~~---------~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~------- 910 (1132)
+..++++.+ +|.|+--.+...+..+ .++ ..+.+..+.... ....|+..+..|.++-+....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 445566666 7888776665433211 122 223444444444 456777788888877665432
Q ss_pred --ceeee---eeccccCCeeEEEEc---CCCCEEEEEcCCCcEEEEECCCcccccc---eeeeCCCCCCCCCCCceeEEE
Q 001176 911 --DEVKT---KLKGHQNRITGLAFS---PTLNALVSSGADAQLCMWSIDKWEKLKS---RFIQAPAGRQSPLVGETKVQF 979 (1132)
Q Consensus 911 --~~~~~---~l~~h~~~V~~l~~s---pdg~~l~s~~~D~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~ 979 (1132)
|..+. .+. ....|.++..- .++.+++.++..|.++--.+........ ..+....+ +.+..+..
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-----d~lv~~~~ 153 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-----DELIGVDL 153 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-----CCEEEEEE
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-----CEEEEEEE
Confidence 22221 122 33456666442 3566899999999999988764332111 11111111 23334333
Q ss_pred -CCCCcEEEEEeCCeEEEEeC-CCCce-------eecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceec
Q 001176 980 -HNDQTHLLVVHESQISVYDS-KLECS-------RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRC 1050 (1132)
Q Consensus 980 -s~dg~~l~~~~d~~v~vwd~-~~~~~-------~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~ 1050 (1132)
..+...+++++.|.+..++. .-... ..+.... ...|.++...+++..|++.+..|.++-.++..-....
T Consensus 154 ~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~--~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~ 231 (307)
T 1zi0_A 154 TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE--GDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKS 231 (307)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCC
T ss_pred eCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCC--CCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCC
Confidence 44455555688888777776 21111 1111111 4567777666666778888999999988775433221
Q ss_pred ccCCCccccccccCCCCCCcEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 001176 1051 RIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~Dg~i~vW~~~~ 1099 (1132)
+-. ..............+..+.... +..-|+..+.+|.+.-..+..
T Consensus 232 Rg~--kG~~~~~~~~~~~~lv~~~~v~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 232 RAT--KGVISIKVTERNGLVVGAVQVD-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TTS--CCEESSCCCTTTCSEEEEEEEC-TTCEEEEEESSCCEEEEEGGG
T ss_pred CCC--CCEEeeEecCCCCeEEEEEEeC-CCceEEEEcCCCcEEEEeccc
Confidence 110 0000011112224455544433 334556667777776666544
No 392
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=29.30 E-value=1.4e+02 Score=33.91 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=42.9
Q ss_pred CCeeEEEEeeCCCEEEEeeC-------------CeEEEEECCCCeEEEEeeCCC-CCeEEEEEeCCCCCeEEEE
Q 001176 838 ESAACIALSKNDSYVMSASG-------------GKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIG 897 (1132)
Q Consensus 838 ~~v~~~~~s~dg~~la~~sd-------------g~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~lasg 897 (1132)
.....|+|+++|.+.+..+. ..|..++..+++..+.+.++. .+++.++|+| |++.|.++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEE
Confidence 34578999999988774431 157777777888777776553 5799999999 77766654
No 393
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=29.13 E-value=1.9e+02 Score=32.88 Aligned_cols=64 Identities=11% Similarity=0.178 Sum_probs=45.5
Q ss_pred eEEEEEEcCCCCEEEEEecC--------CCCCCeEEEEeCCCCceeeeeccccCCceEEEEEeCCCCEEEEE
Q 001176 540 WCTMMAYSADGTRLFSCGTS--------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 603 (1132)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~--------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1132)
....|+|.++|.+.+..-.+ ..+...++.++..+++....+.+.....++.++|+||++.|+++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 56789999999877632110 11234688888888887776665544468999999999988775
No 394
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=27.69 E-value=1.3e+02 Score=34.61 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=43.2
Q ss_pred eEEEEEeCCCCEEEEEEcC------------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001176 588 LGVVQFDTTRNRFLAAGDE------------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 647 (1132)
Q Consensus 588 v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 647 (1132)
.--|+|+|.|.++++-..+ ..+.+.+..+++....+..+.. ..++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g-aE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG-CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT-CEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC-ccCcCeeECCCCCEEEEE
Confidence 4558999999877664321 3466667778887777776644 478999999999887765
No 395
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=27.26 E-value=2.5e+02 Score=22.67 Aligned_cols=89 Identities=9% Similarity=-0.017 Sum_probs=48.7
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHcCCCcc-----HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHHHHH
Q 001176 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN-----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYL 82 (1132)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~l 82 (1132)
...+...++...-|.++...+++=-....+ ...-......|+|++|+..+.+.....+.. . .+.+.+ -.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~~~----a~ 80 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-G-KGYSRK----AA 80 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-H-HHHHHH----HH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-H-HHHHHH----HH
Confidence 344555556666677777777654332222 111233456788999888887654332221 1 111111 11
Q ss_pred HHHhcCCHHHHHHHHHhhcc
Q 001176 83 EALDRQDRAKAVEILVKDLK 102 (1132)
Q Consensus 83 Ell~~~~~~~A~~~l~~~~~ 102 (1132)
-+...|+.++|+..+++-+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 24457888888888886544
No 396
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=26.89 E-value=2.1e+02 Score=24.37 Aligned_cols=100 Identities=11% Similarity=0.114 Sum_probs=50.6
Q ss_pred hhhhccHHHHHHHHHHHcCCCcc-HHHH----HHHHhcccHHHHHHHhcCCCccccccchh-hHHHHHHHHHHHHHHhcC
Q 001176 15 FLDEEKFKETVHKLEQESGFFFN-MKHF----EDQVQAGEWDEVERYLCGFTKVEDNRYSM-KIFFEIRKQKYLEALDRQ 88 (1132)
Q Consensus 15 ~L~~~g~~~s~~~L~~Esg~~~~-~~~~----~~~i~~g~w~~~~~~l~~~~~~~~~~~~~-~~~~~i~~~~~lEll~~~ 88 (1132)
+.+..-|.++...+++=-.+..+ ...+ .-....|+|++|+..+.+...+.+..... ..+-.++...=.-+...+
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~ 97 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN 97 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcC
Confidence 33444477777777654333332 1111 22456789998888776653321111000 011112222222245678
Q ss_pred CHHHHHHHHHhhcccccccCHHHHHHHH
Q 001176 89 DRAKAVEILVKDLKVFSSFNEELFKEIT 116 (1132)
Q Consensus 89 ~~~~A~~~l~~~~~~~~~~~~~~~~~l~ 116 (1132)
++++|+..+++-+.- ..+++.+..|.
T Consensus 98 ~~~~A~~~~~kal~~--~~~~~~~~~l~ 123 (127)
T 4gcn_A 98 DLSLAVQWFHRSLSE--FRDPELVKKVK 123 (127)
T ss_dssp CHHHHHHHHHHHHHH--SCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CcCHHHHHHHH
Confidence 889998888876652 23555555554
No 397
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=26.16 E-value=6.7e+02 Score=27.40 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=37.0
Q ss_pred ccccccccccCceeeeecCCCC--CCCcceEEecCCc--ccccceEEEEEecC--------CceEEeecccceeEEEee
Q 001176 732 DVKPRVAEDVDKIKSWRIPDIS--DPSQIKALRLPDS--IAASKVVRLIYTNS--------GLSLLALASNAVHKLWKW 798 (1132)
Q Consensus 732 ~~~~~~~~~~~~v~~w~~~~~~--~~~~~~~~~~~~~--~~~~~i~~~~~s~~--------g~~l~~~~~dg~i~vw~~ 798 (1132)
...+...-....+.+|.+.... ....++.+.+|.. .+.....++...+. ..-+++....|.|+.|.-
T Consensus 47 ~~GyAlvv~~~~l~VW~y~~~~~~~~~~c~~lpLp~sd~~~~~~lvsi~~~~~~~~~~s~~~pGlliVsptG~VryWes 125 (450)
T 1xks_A 47 EGGWACLVCKEKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMVATREGSIRYWPS 125 (450)
T ss_dssp TTSEEEEEETTEEEEEECCSSCCGGGCCEEEEECCCCSSCCCGGGEEEEECC-------CTTEEEEEECTTCEEEEESC
T ss_pred CCcEEEEEeCCeEEEEeecCCCCCCcccceeccCCccccccCCcEEEEEcCCCccccccCCCceEEEEcCCccEEEccc
Confidence 3444445555789999988652 1235566777652 23333344332222 122455555999999963
No 398
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=26.00 E-value=5.7e+02 Score=26.52 Aligned_cols=203 Identities=8% Similarity=-0.056 Sum_probs=109.7
Q ss_pred CCcCeEEEEEcCCCCeEEEEeCCCeEEEEEe---cCC------CceeeeeeeecccCCEEEEEEec---CCCcEEEEEEc
Q 001176 404 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTY---NPT------GELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCG 471 (1132)
Q Consensus 404 h~~~V~~v~~spdg~~las~~~dg~i~iwd~---~~~------~~~~~~~~l~~h~~~v~~v~~s~---d~~~~~l~s~~ 471 (1132)
..+.+..+........|+.-+..|.++.... ... ..+.....+. ....|.++...+ +.. +++..+
T Consensus 40 e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~--~~v~~T 116 (327)
T 3uc1_A 40 QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAP--YLVLAT 116 (327)
T ss_dssp GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSS--EEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCC--EEEEEc
Confidence 3445666666666667777778887665543 222 1111111222 234566654443 355 789999
Q ss_pred CCCcEEEEECCC-------CeEEEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcC--CCCc-------eEEec
Q 001176 472 DDKMIKVWDVVA-------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGS-------RVDYD 535 (1132)
Q Consensus 472 ~dg~v~vwd~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~-------~~~~~ 535 (1132)
.+|.++.-.+.. |.....++. .+.+..+...... ..++..+..|.+..+... .-.. ...+.
T Consensus 117 ~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~--d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~ 193 (327)
T 3uc1_A 117 RNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAG--DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMR 193 (327)
T ss_dssp TTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTT--CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSC
T ss_pred CCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCC--CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeec
Confidence 999999987654 222223443 3445554443332 568888889998887765 2111 11111
Q ss_pred -CCCCeEEEEEEcCCCCEEEEEecCCCCCCeEEEEeCCCC-------ceeeeecccc-CCceEEEEEeCCCCEEEEEEcC
Q 001176 536 -APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-------AIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDE 606 (1132)
Q Consensus 536 -~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-------~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d 606 (1132)
..+..|.++...+++..++..+. .|.+..-.+..- +-+..+.-.. ...+-.+....+...++..+.+
T Consensus 194 L~~~d~Vv~~~~~~~~~~ll~~T~----~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~ 269 (327)
T 3uc1_A 194 FNIDDRLLSLNVVREGTYLLVATS----GGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSG 269 (327)
T ss_dssp CCTTCCEEEEEECCTTCEEEEEET----TSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGG
T ss_pred CCCCCEEEEEEEECCCCEEEEEeC----CCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCC
Confidence 12346777766666667777764 666766665321 2222222111 1133334334445567777778
Q ss_pred CeEEEEECCC
Q 001176 607 FQIKFWDMDN 616 (1132)
Q Consensus 607 g~i~iwd~~~ 616 (1132)
|.+..++...
T Consensus 270 G~~ir~~~~~ 279 (327)
T 3uc1_A 270 GGVIRTAARQ 279 (327)
T ss_dssp GCEEEEEGGG
T ss_pred CeEEEEehhh
Confidence 8777776543
No 399
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=25.81 E-value=2.5e+02 Score=28.49 Aligned_cols=101 Identities=11% Similarity=0.127 Sum_probs=52.8
Q ss_pred HHhhhhccHHHHHHHHHHHcCCCcc-----HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHHHHHHHHhc
Q 001176 13 LQFLDEEKFKETVHKLEQESGFFFN-----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDR 87 (1132)
Q Consensus 13 ~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~ 87 (1132)
..++..-.+.++...+++=-....+ ...-+-.+..|++++|+..+.++....+.. ....-..-++++..
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------RYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH------HHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch------HHHHHHHHHHHHhh
Confidence 3334444466666666554333332 122234566788888888888775443221 11222333445566
Q ss_pred CCHHHHHHHHHhhcccccccCHHHHHHHHHhhc
Q 001176 88 QDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120 (1132)
Q Consensus 88 ~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~ 120 (1132)
++..+|+..|++.+.-. ..+.+-...|+.++.
T Consensus 199 ~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~ 230 (287)
T 3qou_A 199 AADTPEIQQLQQQVAEN-PEDAALATQLALQLH 230 (287)
T ss_dssp HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cccCccHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 66666777776654322 235555555655554
No 400
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=25.64 E-value=6.4e+02 Score=26.99 Aligned_cols=202 Identities=12% Similarity=0.033 Sum_probs=100.1
Q ss_pred CeEEEEEeCCCCCeEEEEeCCCcEEEEEcccc-e----------eeeeeccc-cCCeeEEEEcCCCCEEEEEcCCCcEEE
Q 001176 880 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-E----------VKTKLKGH-QNRITGLAFSPTLNALVSSGADAQLCM 947 (1132)
Q Consensus 880 ~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~----------~~~~l~~h-~~~V~~l~~spdg~~l~s~~~D~~i~i 947 (1132)
.|..|+. +..+.+.-+.||.|+.|-.... + ....+... ...|..++.. ..+.+....||.|+.
T Consensus 122 ~i~~ia~---G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~~ 196 (406)
T 4d9s_A 122 RIKQIAC---GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLYG 196 (406)
T ss_dssp CEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CEEEEEE---ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC--CCeEEEEeCCCCEEE
Confidence 5666665 4456666789999999975431 1 01112211 2256666653 345555678999999
Q ss_pred EECCCccccc---------ceeeeCCCCCCCCCCCceeEEECCCCcEEEEEeCCeEEEEeC-CCCcee-----------e
Q 001176 948 WSIDKWEKLK---------SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSR-----------S 1006 (1132)
Q Consensus 948 wd~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~-----------~ 1006 (1132)
|-......+. ...+....+ ..+..++... ...++...++.|..|-. ....+. .
T Consensus 197 wG~n~~GqlG~g~~~~~~~p~~v~~~~~-----~~i~~va~G~-~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~ 270 (406)
T 4d9s_A 197 WGWGRYGNLGLGDRTDRLVPERVTSTGG-----EKMSMVACGW-RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHK 270 (406)
T ss_dssp EECCTTSTTCSSSSCCEEEEEECCCSTT-----CCEEEEEECS-SEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred eeCCCCCCCCCCCCCCcCccEEecccCC-----ceEEEEEECC-CcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEE
Confidence 9754322110 001111111 2233443222 22334467888988875 211110 0
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceecccCC-CccccccccCCCCCCcEEEEeCCCCCCeEEE
Q 001176 1007 WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP-SAYIPTYAVSSNTAHPLVIAPHPSEPNQIAL 1085 (1132)
Q Consensus 1007 ~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s 1085 (1132)
+.... ...|..++-. ..+.++-..||.|+.|-....-.+..-.. ....|..+.......+..++. +....++
T Consensus 271 v~~~~--~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~---G~~hs~a 343 (406)
T 4d9s_A 271 LEALS--NSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSC---GWRHTLA 343 (406)
T ss_dssp CGGGT--TSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEE---CSSEEEE
T ss_pred ecccC--CCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEe---CCCeEEE
Confidence 10000 2346666543 33445556899999997654322211000 001111111111234555554 3455666
Q ss_pred EeCCCcEEEEecCC
Q 001176 1086 GMSDGAVHVVEPSD 1099 (1132)
Q Consensus 1086 ~~~Dg~i~vW~~~~ 1099 (1132)
-..||.|..|=...
T Consensus 344 lt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 344 VTERNNVFAWGRGT 357 (406)
T ss_dssp EETTSCEEEEECCT
T ss_pred EeCCCCEEEecCCC
Confidence 67899999998755
No 401
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=25.33 E-value=2.3e+02 Score=23.72 Aligned_cols=88 Identities=9% Similarity=-0.000 Sum_probs=50.5
Q ss_pred HHHHHHhhhhccHHHHHHHHHHHcCCCcc-----HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHHHHHH
Q 001176 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLE 83 (1132)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lE 83 (1132)
..+-..+++..-|.++...+++=-.+..+ ...=.-....|+|++|+..+.+.....+.. .. +.+. .-.=
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~-~~~~----lg~~ 81 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VR-AYIR----KATA 81 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHH----HHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HH-HHHH----HHHH
Confidence 33444555555688888877765433332 112233456799999998887764443322 11 2221 1222
Q ss_pred HHhcCCHHHHHHHHHhhcc
Q 001176 84 ALDRQDRAKAVEILVKDLK 102 (1132)
Q Consensus 84 ll~~~~~~~A~~~l~~~~~ 102 (1132)
+...|+.++|+..+++-+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 4557889999998886543
No 402
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=25.04 E-value=2.1e+02 Score=25.65 Aligned_cols=88 Identities=13% Similarity=0.023 Sum_probs=48.5
Q ss_pred HHHHHHhhhhccHHHHHHHHHHHcCCCcc-----HHHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHHHHHH
Q 001176 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLE 83 (1132)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lE 83 (1132)
..+-..++...-|.++...+++=-.+..+ ...=.-....|+|++|+..+.+........ ..+.+. .-.=
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~----lg~~ 88 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWSR----LGLA 88 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH----HHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHH----HHHH
Confidence 33444445555578877777764433332 112233456788999888887764443322 112221 1122
Q ss_pred HHhcCCHHHHHHHHHhhcc
Q 001176 84 ALDRQDRAKAVEILVKDLK 102 (1132)
Q Consensus 84 ll~~~~~~~A~~~l~~~~~ 102 (1132)
+...|++++|+..+++-+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 4456888888888886433
No 403
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=24.72 E-value=41 Score=19.46 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=10.4
Q ss_pred hHHHHHHHHHhhhh
Q 001176 5 SRELVFLILQFLDE 18 (1132)
Q Consensus 5 ~~e~~~li~q~L~~ 18 (1132)
-+||++||-||-..
T Consensus 4 MkDvlql~qQy~qs 17 (26)
T 1kdl_A 4 MKDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 47888888887654
No 404
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=23.72 E-value=6.2e+02 Score=26.17 Aligned_cols=204 Identities=7% Similarity=-0.022 Sum_probs=100.7
Q ss_pred CCCeeEEEEeeCCCEEEEe-eCCeEEEEEC---CC------CeEEEEe-e-CCCCCeEEEEEeCC--CCCeEEEEeCCCc
Q 001176 837 EESAACIALSKNDSYVMSA-SGGKVSLFNM---MT------FKVMTMF-M-SPPPAATFLAFHPQ--DNNIIAIGMEDSS 902 (1132)
Q Consensus 837 ~~~v~~~~~s~dg~~la~~-sdg~i~vwd~---~~------~~~~~~~-~-~~~~~i~~l~~sp~--~~~~lasg~~dg~ 902 (1132)
...+..+........|+.. +.|.+.-+.. .. |.++..+ . .....|.++..-++ ++.+++.++.+|.
T Consensus 38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 4455555555544444444 4787655543 22 2322111 1 12344665533331 2567889999999
Q ss_pred EEEEEccccee--------eeeeccccCCeeEEEEcCCCCEEEEEcCCCcEEEEECCCcccc----cceeeeCCCCCCCC
Q 001176 903 VQIYNVRVDEV--------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL----KSRFIQAPAGRQSP 970 (1132)
Q Consensus 903 v~iwd~~~~~~--------~~~l~~h~~~V~~l~~spdg~~l~s~~~D~~i~iwd~~~~~~~----~~~~~~~~~~~~~~ 970 (1132)
++-..+..... ...+.. .+.+..+........++..+.+|.+..+....-... .......+. .
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~----~ 192 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK----E 192 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC----T
T ss_pred EEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC----C
Confidence 99988753221 112332 255555555555667888888998888877542111 011111111 1
Q ss_pred CCCceeEEE-CCCC-cEEEEEeCCeEEEEeCCC--------CceeecCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001176 971 LVGETKVQF-HNDQ-THLLVVHESQISVYDSKL--------ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1040 (1132)
Q Consensus 971 ~~~v~~~~~-s~dg-~~l~~~~d~~v~vwd~~~--------~~~~~~~~~~~h~~~i~~i~~s~dg~~las~~~dg~i~v 1040 (1132)
...+..+.. .++. ..++++..|..+..++.. +-.........-...+..+....++..++..+..|.+.-
T Consensus 193 ~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir 272 (323)
T 1wp5_A 193 GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIET 272 (323)
T ss_dssp TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEE
T ss_pred CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEE
Confidence 133455533 3333 344457777766666511 111111111111224544433344455666667777766
Q ss_pred EeCCC
Q 001176 1041 FDAET 1045 (1132)
Q Consensus 1041 wd~~~ 1045 (1132)
..+..
T Consensus 273 ~~~~~ 277 (323)
T 1wp5_A 273 IKVGD 277 (323)
T ss_dssp EEGGG
T ss_pred EEhhh
Confidence 66654
No 405
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=22.82 E-value=3.9e+02 Score=23.45 Aligned_cols=84 Identities=8% Similarity=-0.069 Sum_probs=42.5
Q ss_pred HHHhhhhccHHHHHHHHHHHcCCCcc-H----HHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHHHHHHHHh
Q 001176 12 ILQFLDEEKFKETVHKLEQESGFFFN-M----KHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALD 86 (1132)
Q Consensus 12 i~q~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~ 86 (1132)
-..++...-|.++...+++=..+..+ . ..=.-....|+|++|+..+.+.....+.. .. +.|.+ =.=++.
T Consensus 28 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~-~~~~l----g~~~~~ 101 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE-PR-FPFHA----AECLLQ 101 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-TH-HHHHH----HHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-ch-HHHHH----HHHHHH
Confidence 33344444477777666653322222 1 11123456688888877776654333221 11 22211 112456
Q ss_pred cCCHHHHHHHHHhhc
Q 001176 87 RQDRAKAVEILVKDL 101 (1132)
Q Consensus 87 ~~~~~~A~~~l~~~~ 101 (1132)
.|+.++|+..+++-+
T Consensus 102 ~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 102 XGELAEAESGLFLAQ 116 (148)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 688888888777643
No 406
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=22.40 E-value=1.1e+02 Score=27.85 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=43.9
Q ss_pred HhcccHHHHHHHhcCCCccccccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccc
Q 001176 45 VQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVF 104 (1132)
Q Consensus 45 i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~ 104 (1132)
++..-|+.....+ .+..+.+...-.-+.++|.+..+|+++..|+..+|+.-|+++-.-|
T Consensus 69 fl~~Tw~~~~~~l-gl~~F~P~~QD~~A~~Li~~rgal~~i~~G~i~~a~~~la~~WASL 127 (158)
T 1am7_A 69 LLSRXXDAYRKQL-GLKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSNIXASL 127 (158)
T ss_dssp BCHHHHHHHHHHH-TCCCCCHHHHHHHHHHHHHHTTCHHHHHHTCHHHHHHHHTTTCTTS
T ss_pred hhHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHcCcHHHHHcCCHHHHHHHhccccccC
Confidence 4444576665554 3555555555557899999999999999999999999999886555
No 407
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=22.07 E-value=3.1e+02 Score=27.62 Aligned_cols=95 Identities=8% Similarity=0.015 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHcCCCcc---HH---HH-----HHHHhcccHHHHHHHhcCCCccccccchhhHHHH
Q 001176 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN---MK---HF-----EDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFE 75 (1132)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~---~~-----~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~ 75 (1132)
++...+..++....|.++.+.+++.-..... .. .+ .-....|++++|+.++.+................
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3456667777778898888877754332221 00 00 1124568999999987654222111111112234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001176 76 IRKQKYLEALDRQDRAKAVEILVKDL 101 (1132)
Q Consensus 76 i~~~~~lEll~~~~~~~A~~~l~~~~ 101 (1132)
++-..-.-+...|++++|+..+.+-+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555677899999999998766
No 408
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=21.28 E-value=13 Score=31.25 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCCccHHHHHHHHhcccHHHHHHHhcCC
Q 001176 24 TVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60 (1132)
Q Consensus 24 s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (1132)
.+..+-+|||+.+++.-+-..| +|+||++...++++
T Consensus 37 ~~i~vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 37 RAIEKISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 3444446899999877776666 59999998877654
No 409
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.73 E-value=3.9e+02 Score=22.69 Aligned_cols=89 Identities=9% Similarity=-0.002 Sum_probs=47.9
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHcCCCccH--------HHHHHHHhcccHHHHHHHhcCCCccccccchhhHHHHHHHH
Q 001176 8 LVFLILQFLDEEKFKETVHKLEQESGFFFNM--------KHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQ 79 (1132)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~L~~Esg~~~~~--------~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 79 (1132)
...+-..++...-|.++...+++=-.+..+- ..-......|+|++|+..+.+........ .. +.+.+
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~-~~~~~--- 105 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VK-ALYRR--- 105 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HH-HHHHH---
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HH-HHHHH---
Confidence 3444455555555777777777655444331 11123456788888888776653332221 11 22111
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcc
Q 001176 80 KYLEALDRQDRAKAVEILVKDLK 102 (1132)
Q Consensus 80 ~~lEll~~~~~~~A~~~l~~~~~ 102 (1132)
-.-+...++.++|+..+++-+.
T Consensus 106 -a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 -SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp -HHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHcCCHHHHHHHHHHHHH
Confidence 1113456788888888876543
No 410
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=20.28 E-value=1.3e+02 Score=24.37 Aligned_cols=53 Identities=2% Similarity=0.055 Sum_probs=33.7
Q ss_pred HHhcccHHHHHHHhcCCCccccccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 001176 44 QVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLK 102 (1132)
Q Consensus 44 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~ 102 (1132)
....|+|++|+..+.+.....+.. .. +.+.+ =.-+...|+.++|+..+++-+.
T Consensus 17 ~~~~g~~~~A~~~~~~al~~~p~~-~~-a~~~l----g~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 17 HLKHDNASRALALFEELVETDPDY-VG-TYYHL----GKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC-TH-HHHHH----HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCc-HH-HHHHH----HHHHHHcCCHHHHHHHHHHHHh
Confidence 456799999999988765443332 11 22221 1224567999999999987544
No 411
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=20.14 E-value=4e+02 Score=25.06 Aligned_cols=106 Identities=9% Similarity=0.029 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHcCCCcc-HH--------------------HHHHHHhcccHHHHHHHhcCCCccc
Q 001176 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN-MK--------------------HFEDQVQAGEWDEVERYLCGFTKVE 64 (1132)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-~~--------------------~~~~~i~~g~w~~~~~~l~~~~~~~ 64 (1132)
++++..-..++...-|.++...+++=..+..+ .. .=......|++++|+..+.+.....
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 44566666677777788888887765444333 11 1123456799999999887764443
Q ss_pred cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHh
Q 001176 65 DNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQL 118 (1132)
Q Consensus 65 ~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l 118 (1132)
+.. . .+.+.+ =.-+...|+.++|+..+++-+. +...+.+-+..|..+
T Consensus 85 p~~-~-~~~~~l----g~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 85 PNN-V-DCLEAC----AEMQVCRGQEKDALRMYEKILQ-LEADNLAANIFLGNY 131 (208)
T ss_dssp TTC-H-HHHHHH----HHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHH
T ss_pred CCC-H-HHHHHH----HHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHH
Confidence 332 1 122221 1124567999999999997644 222345544444443
Done!