BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001178
(1131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 64.3 bits (155), Expect = 4e-10, Method: Composition-based stats.
Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 12/207 (5%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH Y C + + I S + D ++ W
Sbjct: 80 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 137 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 192
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWD 616
V+F ILAA DN +K WD
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
D+N++ +D T++I++V + LKGH ++ F+ N++VS D + W+
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 946 TDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA-IYDGSKMECIRQWVP 1004
T + K+ LPA PV + V F+ D ++ + L I+D + +C++ +
Sbjct: 135 VKTGKCLKT----LPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 188
Query: 1005 QDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037
D + P+S +S N + I A D ++ ++D
Sbjct: 189 DD--NPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 65 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 120
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G+ L H PV +V H + I S++ DG + W
Sbjct: 121 -IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDT 177
Query: 529 DN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
+ + + +D D P + + + +S +G + + D+ L W+ S+G +TY G
Sbjct: 178 ASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTG 231
Query: 586 FRKKSAGV-VQFDTTRNR-ILAAGEDNQIKFWDM 617
+ + + F T + I++ EDN + W++
Sbjct: 232 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 40/211 (18%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPF--------------------- 388
V +F+P L+V G D + +WDV + L + P
Sbjct: 109 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 167
Query: 389 -----KIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND 443
+IWD ++ + ++ D + VS V +SP+G +I A + + L+ Y S
Sbjct: 168 YDGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY--SKG 223
Query: 444 LCQSLEIDAHVGGVNDLAFSYPNKQLC----IVTCGDDKLIRVWDLSGRKLFQ-FEGHEA 498
C + + G N+ + N + IV+ +D L+ +W+L +++ Q +GH
Sbjct: 224 KC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 279
Query: 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V S H ENI + D IK W D
Sbjct: 280 VVISTACHPTENIIASAALENDKTIKLWKSD 310
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTMLY 549
F GH V SV N ++ S++ D IK W YD + L + + +
Sbjct: 16 FTLAGHTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAW 72
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
S+D + L S D L W+ S G +T G F+ N I++ D
Sbjct: 73 SSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFD 127
Query: 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 128 ESVRIWDVKTGKCLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Score = 37.7 bits (86), Expect = 0.038, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 14/141 (9%)
Query: 816 WQPSNG----LLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTF 870
W ++G L+ +D P V V S N Y+++A + L++ K + T+
Sbjct: 175 WDTASGQCLKTLIDDDNPP-----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 229
Query: 871 MSPPPAS--TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN 928
F F I G ED+ + I+N++ E+ KL+GH + A
Sbjct: 230 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 289
Query: 929 LNILVSSG--SDAQLIFWNTD 947
NI+ S+ +D + W +D
Sbjct: 290 ENIIASAALENDKTIKLWKSD 310
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 18/137 (13%)
Query: 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968
+K L GH K ++ + FS N L SS +D + W + K+I+ +G
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 67
Query: 969 TRVQFHSDQVRLL-VNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN----SQL 1023
+ V + SD L+ + + L I+D S +C++ S+ + CN S L
Sbjct: 68 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQSNL 120
Query: 1024 IYATFTDGSIGVFDADS 1040
I + D S+ ++D +
Sbjct: 121 IVSGSFDESVRIWDVKT 137
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH V+ C + + I S + D ++ W
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 215
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
V+F ILAA DN +K WD L + F+ G +V
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 650 TTADQGIKILAN 661
+ ++ + + N
Sbjct: 276 SGSEDNLVYIWN 287
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 15/242 (6%)
Query: 798 RTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGK-V 856
R + PS AT + P +P+ L T V V S N ++ S+ K +
Sbjct: 14 RAQPTPSSSATQS-KPTPVKPNYALKFT---LAGHTKAVSSVKFSPNGEWLASSSADKLI 69
Query: 857 SLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH 916
++ + K T + +A+ D+N++ +D T++I++V + LKGH
Sbjct: 70 KIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 128
Query: 917 QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD 976
++ F+ N++VS D + W+ T + K+ LPA PV + V F+ D
Sbjct: 129 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT----LPAHSDPV--SAVHFNRD 182
Query: 977 QVRLLVNHETQLA-IYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGV 1035
++ + L I+D + +C++ + D + P+S +S N + I A D ++ +
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKL 240
Query: 1036 FD 1037
+D
Sbjct: 241 WD 242
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 88 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 143
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G+ L H PV +V H + I S++ DG + W
Sbjct: 144 -IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDT 200
Query: 529 DN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
+ + + +D D P + + + +S +G + + D+ L W+ S+G +TY G
Sbjct: 201 ASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTG 254
Query: 586 FR-KKSAGVVQFDTTRNRILAAG-EDNQIKFWDM 617
+ +K F T + + +G EDN + W++
Sbjct: 255 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 288
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 40/211 (18%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP---------------------- 387
V +F+P L+V G D + +WDV + L + P
Sbjct: 132 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190
Query: 388 ----FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND 443
+IWD + S ++ D + VS V +SP+G +I A + + L+ Y S
Sbjct: 191 YDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY--SKG 246
Query: 444 LCQSLEIDAHVGGVNDLAFSYPNKQLC----IVTCGDDKLIRVWDLSGRKLFQ-FEGHEA 498
C + + G N+ + N + IV+ +D L+ +W+L +++ Q +GH
Sbjct: 247 KC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302
Query: 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V S H ENI + D IK W D
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTMLY 549
F GH V SV N ++ S++ D IK W YD + L + + +
Sbjct: 39 FTLAGHTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAW 95
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
S+D + L S D L W+ S G +T G F+ N I++ D
Sbjct: 96 SSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFD 150
Query: 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 151 ESVRIWDVKTGKCLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAI 892
V V S N Y+++A + L++ K + T+ F F I
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 276
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTD 947
G ED+ + I+N++ E+ KL+GH + A NI+ S+ +D + W +D
Sbjct: 277 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH V+ C + + I S + D ++ W
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 217
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
V+F ILAA DN +K WD L + F+ G +V
Sbjct: 218 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 277
Query: 650 TTADQGIKILAN 661
+ ++ + + N
Sbjct: 278 SGSEDNLVYIWN 289
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 15/242 (6%)
Query: 798 RTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGK-V 856
R + PS AT + P +P+ L T V V S N ++ S+ K +
Sbjct: 16 RAQPTPSSSATQS-KPTPVKPNYALKFT---LAGHTKAVSSVKFSPNGEWLASSSADKLI 71
Query: 857 SLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH 916
++ + K T + +A+ D+N++ +D T++I++V + LKGH
Sbjct: 72 KIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 130
Query: 917 QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD 976
++ F+ N++VS D + W+ T + K+ LPA PV + V F+ D
Sbjct: 131 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT----LPAHSDPV--SAVHFNRD 184
Query: 977 QVRLLVNHETQLA-IYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGV 1035
++ + L I+D + +C++ + D + P+S +S N + I A D ++ +
Sbjct: 185 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKL 242
Query: 1036 FD 1037
+D
Sbjct: 243 WD 244
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 90 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 145
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G+ L H PV +V H + I S++ DG + W
Sbjct: 146 -IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDT 202
Query: 529 DN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
+ + + +D D P + + + +S +G + + D+ L W+ S+G +TY G
Sbjct: 203 ASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTG 256
Query: 586 FR-KKSAGVVQFDTTRNRILAAG-EDNQIKFWDM 617
+ +K F T + + +G EDN + W++
Sbjct: 257 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 290
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 40/211 (18%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP---------------------- 387
V +F+P L+V G D + +WDV + L + P
Sbjct: 134 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 192
Query: 388 ----FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND 443
+IWD + S ++ D + VS V +SP+G +I A + + L+ Y S
Sbjct: 193 YDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY--SKG 248
Query: 444 LCQSLEIDAHVGGVNDLAFSYPNKQLC----IVTCGDDKLIRVWDLSGRKLFQ-FEGHEA 498
C + + G N+ + N + IV+ +D L+ +W+L +++ Q +GH
Sbjct: 249 KC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 304
Query: 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V S H ENI + D IK W D
Sbjct: 305 VVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTMLY 549
F GH V SV N ++ S++ D IK W YD + L + + +
Sbjct: 41 FTLAGHTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAW 97
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
S+D + L S D L W+ S G +T G F+ N I++ D
Sbjct: 98 SSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFD 152
Query: 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 153 ESVRIWDVKTGKCLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAI 892
V V S N Y+++A + L++ K + T+ F F I
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 278
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTD 947
G ED+ + I+N++ E+ KL+GH + A NI+ S+ +D + W +D
Sbjct: 279 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH V+ C + + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 199
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
V+F ILAA DN +K WD L + F+ G +V
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 650 TTADQGIKILAN 661
+ ++ + + N
Sbjct: 260 SGSEDNLVYIWN 271
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V V S N ++ S+ K + ++ + K T + +A+ D+N++
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSAS 90
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954
+D T++I++V + LKGH ++ F+ N++VS D + W+ T + K+
Sbjct: 91 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 150
Query: 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA-IYDGSKMECIRQWVPQDVLSSPIS 1013
LPA PV + V F+ D ++ + L I+D + +C++ + D + P+S
Sbjct: 151 ----LPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVS 202
Query: 1014 SAAYSCNSQLIYATFTDGSIGVFD 1037
+S N + I A D ++ ++D
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWD 226
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 127
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G+ L H PV +V H + I S++ DG + W
Sbjct: 128 -IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDT 184
Query: 529 DN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
+ + + +D D P + + + +S +G + + D+ L W+ S+G +TY G
Sbjct: 185 ASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTG 238
Query: 586 FR-KKSAGVVQFDTTRNRILAAG-EDNQIKFWDM 617
+ +K F T + + +G EDN + W++
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 40/211 (18%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP---------------------- 387
V +F+P L+V G D + +WDV + L + P
Sbjct: 116 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
Query: 388 ----FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND 443
+IWD + S ++ D + VS V +SP+G +I A + + L+ Y S
Sbjct: 175 YDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY--SKG 230
Query: 444 LCQSLEIDAHVGGVNDLAFSYPNKQLC----IVTCGDDKLIRVWDLSGRKLFQ-FEGHEA 498
C + + G N+ + N + IV+ +D L+ +W+L +++ Q +GH
Sbjct: 231 KC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 286
Query: 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V S H ENI + D IK W D
Sbjct: 287 VVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTMLY 549
F GH V SV N ++ S++ D IK W YD + L + + +
Sbjct: 23 FTLAGHTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAW 79
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
S+D + L S D L W+ S G +T G F+ N I++ D
Sbjct: 80 SSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFD 134
Query: 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAI 892
V V S N Y+++A + L++ K + T+ F F I
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTD 947
G ED+ + I+N++ E+ KL+GH + A NI+ S+ +D + W +D
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968
+K L GH K ++ + FS N L SS +D + W + K+I+ +G
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 74
Query: 969 TRVQFHSDQVRLL-VNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN----SQL 1023
+ V + SD L+ + + L I+D S +C++ S+ + CN S L
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQSNL 127
Query: 1024 IYATFTDGSIGVFD 1037
I + D S+ ++D
Sbjct: 128 IVSGSFDESVRIWD 141
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH V+ C + + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 199
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
V+F ILAA DN +K WD L + F+ G +V
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 650 TTADQGIKILAN 661
+ ++ + + N
Sbjct: 260 SGSEDNLVYIWN 271
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V V S N ++ S+ K + ++ + K T + +A+ D+N++
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSAS 90
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954
+D T++I++V + LKGH ++ F+ N++VS D + W+ T + K+
Sbjct: 91 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 150
Query: 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA-IYDGSKMECIRQWVPQDVLSSPIS 1013
LPA PV + V F+ D ++ + L I+D + +C++ + D + P+S
Sbjct: 151 ----LPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVS 202
Query: 1014 SAAYSCNSQLIYATFTDGSIGVFD 1037
+S N + I A D ++ ++D
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWD 226
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 127
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G+ L H PV +V H + I S++ DG + W
Sbjct: 128 -IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDT 184
Query: 529 DN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
+ + + +D D P + + + +S +G + + D+ L W+ S+G +TY G
Sbjct: 185 ASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTG 238
Query: 586 FR-KKSAGVVQFDTTRNRILAAG-EDNQIKFWDM 617
+ +K F T + + +G EDN + W++
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 40/211 (18%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP---------------------- 387
V +F+P L+V G D + +WDV + L + P
Sbjct: 116 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
Query: 388 ----FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND 443
+IWD + S ++ D + VS V +SP+G +I A + + L+ Y S
Sbjct: 175 YDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY--SKG 230
Query: 444 LCQSLEIDAHVGGVNDLAFSYPNKQLC----IVTCGDDKLIRVWDLSGRKLFQ-FEGHEA 498
C + + G N+ + N + IV+ +D L+ +W+L +++ Q +GH
Sbjct: 231 KC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 286
Query: 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V S H ENI + D IK W D
Sbjct: 287 VVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTMLY 549
F GH V SV N ++ S++ D IK W YD + L + + +
Sbjct: 23 FTLAGHTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAW 79
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
S+D + L S D L W+ S G +T G F+ N I++ D
Sbjct: 80 SSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFD 134
Query: 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAI 892
V V S N Y+++A + L++ K + T+ F F I
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTD 947
G ED+ + I+N++ E+ KL+GH + A NI+ S+ +D + W +D
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH V+ C + + I S + D ++ W
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 193
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
V+F ILAA DN +K WD L + F+ G +V
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 650 TTADQGIKILAN 661
+ ++ + + N
Sbjct: 254 SGSEDNLVYIWN 265
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V V S N ++ S+ K + ++ + K T + +A+ D+N++
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSAS 84
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954
+D T++I++V + LKGH ++ F+ N++VS D + W+ T + K+
Sbjct: 85 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 144
Query: 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA-IYDGSKMECIRQWVPQDVLSSPIS 1013
LPA PV + V F+ D ++ + L I+D + +C++ + D + P+S
Sbjct: 145 ----LPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVS 196
Query: 1014 SAAYSCNSQLIYATFTDGSIGVFD 1037
+S N + I A D ++ ++D
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWD 220
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 121
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G+ L H PV +V H + I S++ DG + W
Sbjct: 122 -IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDT 178
Query: 529 DN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
+ + + +D D P + + + +S +G + + D+ L W+ S+G +TY G
Sbjct: 179 ASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTG 232
Query: 586 FR-KKSAGVVQFDTTRNRILAAG-EDNQIKFWDM 617
+ +K F T + + +G EDN + W++
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 40/211 (18%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP---------------------- 387
V +F+P L+V G D + +WDV + L + P
Sbjct: 110 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168
Query: 388 ----FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND 443
+IWD + S ++ D + VS V +SP+G +I A + + L+ Y S
Sbjct: 169 YDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY--SKG 224
Query: 444 LCQSLEIDAHVGGVNDLAFSYPNKQLC----IVTCGDDKLIRVWDLSGRKLFQ-FEGHEA 498
C + + G N+ + N + IV+ +D L+ +W+L +++ Q +GH
Sbjct: 225 KC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 280
Query: 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V S H ENI + D IK W D
Sbjct: 281 VVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTMLY 549
F GH V SV N ++ S++ D IK W YD + L + + +
Sbjct: 17 FTLAGHTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAW 73
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
S+D + L S D L W+ S G +T G F+ N I++ D
Sbjct: 74 SSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFD 128
Query: 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAI 892
V V S N Y+++A + L++ K + T+ F F I
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTD 947
G ED+ + I+N++ E+ KL+GH + A NI+ S+ +D + W +D
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968
+K L GH K ++ + FS N L SS +D + W + K+I+ +G
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 68
Query: 969 TRVQFHSDQVRLL-VNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN----SQL 1023
+ V + SD L+ + + L I+D S +C++ S+ + CN S L
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQSNL 121
Query: 1024 IYATFTDGSIGVFD 1037
I + D S+ ++D
Sbjct: 122 IVSGSFDESVRIWD 135
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH V+ C + + I S + D ++ W
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 189
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
V+F ILAA DN +K WD L + F+ G +V
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 249
Query: 650 TTADQGIKILAN 661
+ ++ + + N
Sbjct: 250 SGSEDNLVYIWN 261
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V V S N ++ S+ K + ++ + K T + +A+ D+N++
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSAS 80
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954
+D T++I++V + LKGH ++ F+ N++VS D + W+ T + K+
Sbjct: 81 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 140
Query: 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA-IYDGSKMECIRQWVPQDVLSSPIS 1013
LPA PV + V F+ D ++ + L I+D + +C++ + D + P+S
Sbjct: 141 ----LPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVS 192
Query: 1014 SAAYSCNSQLIYATFTDGSIGVFD 1037
+S N + I A D ++ ++D
Sbjct: 193 FVKFSPNGKYILAATLDNTLKLWD 216
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 62 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 117
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G+ L H PV +V H + I S++ DG + W
Sbjct: 118 -IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDT 174
Query: 529 DN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
+ + + +D D P + + + +S +G + + D+ L W+ S+G +TY G
Sbjct: 175 ASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTG 228
Query: 586 FR-KKSAGVVQFDTTRNRILAAG-EDNQIKFWDM 617
+ +K F T + + +G EDN + W++
Sbjct: 229 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 40/211 (18%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP---------------------- 387
V +F+P L+V G D + +WDV + L + P
Sbjct: 106 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 164
Query: 388 ----FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND 443
+IWD + S ++ D + VS V +SP+G +I A + + L+ Y S
Sbjct: 165 YDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY--SKG 220
Query: 444 LCQSLEIDAHVGGVNDLAFSYPNKQLC----IVTCGDDKLIRVWDLSGRKLFQ-FEGHEA 498
C + + G N+ + N + IV+ +D L+ +W+L +++ Q +GH
Sbjct: 221 KC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 276
Query: 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V S H ENI + D IK W D
Sbjct: 277 VVISTACHPTENIIASAALENDKTIKLWKSD 307
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTMLY 549
F GH V SV N ++ S++ D IK W YD + L + + +
Sbjct: 13 FTLAGHTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAW 69
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
S+D + L S D L W+ S G +T G F+ N I++ D
Sbjct: 70 SSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFD 124
Query: 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 125 ESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAI 892
V V S N Y+++A + L++ K + T+ F F I
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 250
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTD 947
G ED+ + I+N++ E+ KL+GH + A NI+ S+ +D + W +D
Sbjct: 251 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968
+K L GH K ++ + FS N L SS +D + W + K+I+ +G
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 64
Query: 969 TRVQFHSDQVRLL-VNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN----SQL 1023
+ V + SD L+ + + L I+D S +C++ S+ + CN S L
Sbjct: 65 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQSNL 117
Query: 1024 IYATFTDGSIGVFD 1037
I + D S+ ++D
Sbjct: 118 IVSGSFDESVRIWD 131
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH V+ C + + I S + D ++ W
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 193
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
V+F ILAA DN +K WD L + F+ G +V
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 650 TTADQGIKILAN 661
+ ++ + + N
Sbjct: 254 SGSEDNLVYIWN 265
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V V S N ++ S+ K + ++ + K T + +A+ D+N++
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSAS 84
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954
+D T++I++V + LKGH ++ F+ N++VS D + W+ T + K+
Sbjct: 85 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 144
Query: 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA-IYDGSKMECIRQWVPQDVLSSPIS 1013
LPA PV + V F+ D ++ + L I+D + +C++ + D + P+S
Sbjct: 145 ----LPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVS 196
Query: 1014 SAAYSCNSQLIYATFTDGSIGVFD 1037
+S N + I A D ++ ++D
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWD 220
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 121
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G+ L H PV +V H + I S++ DG + W
Sbjct: 122 -IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDT 178
Query: 529 DN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
+ + + +D D P + + + +S +G + + D+ L W+ S+G +TY G
Sbjct: 179 ASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTG 232
Query: 586 FR-KKSAGVVQFDTTRNRILAAG-EDNQIKFWDM 617
+ +K F T + + +G EDN + W++
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 40/211 (18%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP---------------------- 387
V +F+P L+V G D + +WDV + L + P
Sbjct: 110 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168
Query: 388 ----FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND 443
+IWD + S ++ D + VS V +SP+G +I A + + L+ Y S
Sbjct: 169 YDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY--SKG 224
Query: 444 LCQSLEIDAHVGGVNDLAFSYPNKQLC----IVTCGDDKLIRVWDLSGRKLFQ-FEGHEA 498
C + + G N+ + N + IV+ +D L+ +W+L +++ Q +GH
Sbjct: 225 KC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 280
Query: 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V S H ENI + D IK W D
Sbjct: 281 VVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTMLY 549
F GH V SV N ++ S++ D IK W YD + L + + +
Sbjct: 17 FTLAGHTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAW 73
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
S+D + L S D L W+ S G +T G F+ N I++ D
Sbjct: 74 SSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFD 128
Query: 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAI 892
V V S N Y+++A + L++ K + T+ F F I
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTD 947
G ED+ + I+N++ E+ KL+GH + A NI+ S+ +D + W +D
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968
+K L GH K ++ + FS N L SS +D + W + K+I+ +G
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 68
Query: 969 TRVQFHSDQVRLL-VNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN----SQL 1023
+ V + SD L+ + + L I+D S +C++ S+ + CN S L
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQSNL 121
Query: 1024 IYATFTDGSIGVFD 1037
I + D S+ ++D
Sbjct: 122 IVSGSFDESVRIWD 135
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH V+ C + + I S + D ++ W
Sbjct: 82 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 139 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 194
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
V+F ILAA DN +K WD L + F+ G +V
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 254
Query: 650 TTADQGIKILAN 661
+ ++ + + N
Sbjct: 255 SGSEDNLVYIWN 266
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V V S N ++ S+ K + ++ + K T + +A+ D+N++
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSAS 85
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954
+D T++I++V + LKGH ++ F+ N++VS D + W+ T + K+
Sbjct: 86 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 145
Query: 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA-IYDGSKMECIRQWVPQDVLSSPIS 1013
LPA PV + V F+ D ++ + L I+D + +C++ + D + P+S
Sbjct: 146 ----LPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVS 197
Query: 1014 SAAYSCNSQLIYATFTDGSIGVFD 1037
+S N + I A D ++ ++D
Sbjct: 198 FVKFSPNGKYILAATLDNTLKLWD 221
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 67 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 122
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G+ L H PV +V H + I S++ DG + W
Sbjct: 123 -IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDT 179
Query: 529 DN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
+ + + +D D P + + + +S +G + + D+ L W+ S+G +TY G
Sbjct: 180 ASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTG 233
Query: 586 FR-KKSAGVVQFDTTRNRILAAG-EDNQIKFWDM 617
+ +K F T + + +G EDN + W++
Sbjct: 234 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 267
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 40/211 (18%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP---------------------- 387
V +F+P L+V G D + +WDV + L + P
Sbjct: 111 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 169
Query: 388 ----FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND 443
+IWD + S ++ D + VS V +SP+G +I A + + L+ Y S
Sbjct: 170 YDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY--SKG 225
Query: 444 LCQSLEIDAHVGGVNDLAFSYPNKQLC----IVTCGDDKLIRVWDLSGRKLFQ-FEGHEA 498
C + + G N+ + N + IV+ +D L+ +W+L +++ Q +GH
Sbjct: 226 KC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 281
Query: 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V S H ENI + D IK W D
Sbjct: 282 VVISTACHPTENIIASAALENDKTIKLWKSD 312
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTMLY 549
F GH V SV N ++ S++ D IK W YD + L + + +
Sbjct: 18 FTLAGHTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAW 74
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
S+D + L S D L W+ S G +T G F+ N I++ D
Sbjct: 75 SSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFD 129
Query: 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 130 ESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAI 892
V V S N Y+++A + L++ K + T+ F F I
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 255
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTD 947
G ED+ + I+N++ E+ KL+GH + A NI+ S+ +D + W +D
Sbjct: 256 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968
+K L GH K ++ + FS N L SS +D + W + K+I+ +G
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 69
Query: 969 TRVQFHSDQVRLL-VNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN----SQL 1023
+ V + SD L+ + + L I+D S +C++ S+ + CN S L
Sbjct: 70 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQSNL 122
Query: 1024 IYATFTDGSIGVFD 1037
I + D S+ ++D
Sbjct: 123 IVSGSFDESVRIWD 136
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH V+ C + + I S + D ++ W
Sbjct: 86 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 143 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 198
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
V+F ILAA DN +K WD L + F+ G +V
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 258
Query: 650 TTADQGIKILAN 661
+ ++ + + N
Sbjct: 259 SGSEDNLVYIWN 270
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V V S N ++ S+ K + ++ + K T + +A+ D+N++
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSAS 89
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954
+D T++I++V + LKGH ++ F+ N++VS D + W+ T + K+
Sbjct: 90 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 149
Query: 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA-IYDGSKMECIRQWVPQDVLSSPIS 1013
LPA PV + V F+ D ++ + L I+D + +C++ + D + P+S
Sbjct: 150 ----LPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVS 201
Query: 1014 SAAYSCNSQLIYATFTDGSIGVFD 1037
+S N + I A D ++ ++D
Sbjct: 202 FVKFSPNGKYILAATLDNTLKLWD 225
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 71 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 126
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G+ L H PV +V H + I S++ DG + W
Sbjct: 127 -IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDT 183
Query: 529 DN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
+ + + +D D P + + + +S +G + + D+ L W+ S+G +TY G
Sbjct: 184 ASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTG 237
Query: 586 FR-KKSAGVVQFDTTRNRILAAG-EDNQIKFWDM 617
+ +K F T + + +G EDN + W++
Sbjct: 238 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 271
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 40/211 (18%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP---------------------- 387
V +F+P L+V G D + +WDV + L + P
Sbjct: 115 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 173
Query: 388 ----FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND 443
+IWD + S ++ D + VS V +SP+G +I A + + L+ Y S
Sbjct: 174 YDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY--SKG 229
Query: 444 LCQSLEIDAHVGGVNDLAFSYPNKQLC----IVTCGDDKLIRVWDLSGRKLFQ-FEGHEA 498
C + + G N+ + N + IV+ +D L+ +W+L +++ Q +GH
Sbjct: 230 KC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 285
Query: 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V S H ENI + D IK W D
Sbjct: 286 VVISTACHPTENIIASAALENDKTIKLWKSD 316
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTMLY 549
F GH V SV N ++ S++ D IK W YD + L + + +
Sbjct: 22 FTLAGHTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAW 78
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
S+D + L S D L W+ S G +T G F+ N I++ D
Sbjct: 79 SSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFD 133
Query: 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 134 ESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAI 892
V V S N Y+++A + L++ K + T+ F F I
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 259
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTD 947
G ED+ + I+N++ E+ KL+GH + A NI+ S+ +D + W +D
Sbjct: 260 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968
+K L GH K ++ + FS N L SS +D + W + K+I+ +G
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 73
Query: 969 TRVQFHSDQVRLL-VNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN----SQL 1023
+ V + SD L+ + + L I+D S +C++ S+ + CN S L
Sbjct: 74 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQSNL 126
Query: 1024 IYATFTDGSIGVFD 1037
I + D S+ ++D
Sbjct: 127 IVSGSFDESVRIWD 140
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 42 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH V+ C + + I S + D ++ W
Sbjct: 98 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 155 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 210
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
V+F ILAA DN +K WD L + F+ G +V
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 270
Query: 650 TTADQGIKILAN 661
+ ++ + + N
Sbjct: 271 SGSEDNLVYIWN 282
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V V S N ++ S+ K + ++ + K T + +A+ D+N++
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSAS 101
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954
+D T++I++V + LKGH ++ F+ N++VS D + W+ T + K+
Sbjct: 102 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 161
Query: 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA-IYDGSKMECIRQWVPQDVLSSPIS 1013
LPA PV + V F+ D ++ + L I+D + +C++ + D + P+S
Sbjct: 162 ----LPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVS 213
Query: 1014 SAAYSCNSQLIYATFTDGSIGVFD 1037
+S N + I A D ++ ++D
Sbjct: 214 FVKFSPNGKYILAATLDNTLKLWD 237
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 83 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 138
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G+ L H PV +V H + I S++ DG + W
Sbjct: 139 -IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDT 195
Query: 529 DN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
+ + + +D D P + + + +S +G + + D+ L W+ S+G +TY G
Sbjct: 196 ASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTG 249
Query: 586 FR-KKSAGVVQFDTTRNRILAAG-EDNQIKFWDM 617
+ +K F T + + +G EDN + W++
Sbjct: 250 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 283
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 44/213 (20%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP---------------------- 387
V +F+P L+V G D + +WDV + L + P
Sbjct: 127 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 185
Query: 388 ----FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND 443
+IWD + S ++ D + VS V +SP+G +I A + + L+ Y S
Sbjct: 186 YDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY--SKG 241
Query: 444 LCQSLEIDAHVGGVNDLAFSYPNKQLC----IVTCGDDKLIRVWDLSGRKLFQ-FEGHEA 498
C + + G N+ + N + IV+ +D L+ +W+L +++ Q +GH
Sbjct: 242 KC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 297
Query: 499 PVYSVCPHQKENIHFIFSTAV--DGKIKAWLYD 529
V S H ENI I S A+ D IK W D
Sbjct: 298 VVISTACHPTENI--IASAALENDKTIKLWKSD 328
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTMLY 549
F GH V SV N ++ S++ D IK W YD + L + + +
Sbjct: 34 FTLAGHTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAW 90
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
S+D + L S D L W+ S G +T G F+ N I++ D
Sbjct: 91 SSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFD 145
Query: 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 146 ESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAI 892
V V S N Y+++A + L++ K + T+ F F I
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 271
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTD 947
G ED+ + I+N++ E+ KL+GH + A NI+ S+ +D + W +D
Sbjct: 272 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968
+K L GH K ++ + FS N L SS +D + W + K+I+ +G
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 85
Query: 969 TRVQFHSDQVRLL-VNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN----SQL 1023
+ V + SD L+ + + L I+D S +C++ S+ + CN S L
Sbjct: 86 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQSNL 138
Query: 1024 IYATFTDGSIGVFD 1037
I + D S+ ++D
Sbjct: 139 IVSGSFDESVRIWD 152
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH V+ C + + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 199
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
V+F ILAA DN +K WD L + F+ G +V
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 650 TTADQGIKILAN 661
+ ++ + + N
Sbjct: 260 SGSEDNLVYIWN 271
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V V S N ++ S+ K + ++ + K T + +A+ D+N++
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSAS 90
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954
+D T++I++V + LKGH ++ F+ N++VS D + W+ T + K+
Sbjct: 91 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 150
Query: 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA-IYDGSKMECIRQWVPQDVLSSPIS 1013
LPA PV + V F+ D ++ + L I+D + +C++ + D + P+S
Sbjct: 151 ----LPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVS 202
Query: 1014 SAAYSCNSQLIYATFTDGSIGVFD 1037
+S N + I A D ++ ++D
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWD 226
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 127
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G+ L H PV +V H + I S++ DG + W
Sbjct: 128 -IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDT 184
Query: 529 DN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
+ + + +D D P + + + +S +G + + D+ L W+ S+G +TY G
Sbjct: 185 ASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTG 238
Query: 586 FR-KKSAGVVQFDTTRNRILAAG-EDNQIKFWDM 617
+ +K F T + + +G EDN + W++
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 40/211 (18%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP---------------------- 387
V +F+P L+V G D + +WDV + L + P
Sbjct: 116 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
Query: 388 ----FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND 443
+IWD + S ++ D + VS V +SP+G +I A + + L+ Y S
Sbjct: 175 YDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY--SKG 230
Query: 444 LCQSLEIDAHVGGVNDLAFSYPNKQLC----IVTCGDDKLIRVWDLSGRKLFQ-FEGHEA 498
C + + G N+ + N + IV+ +D L+ +W+L +++ Q +GH
Sbjct: 231 KC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 286
Query: 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V S H ENI + D IK W D
Sbjct: 287 VVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTMLY 549
F GH V SV N ++ S++ D IK W YD + L + + +
Sbjct: 23 FTLAGHTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAW 79
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
S+D + L S D L W+ S G +T G F+ N I++ D
Sbjct: 80 SSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFD 134
Query: 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAI 892
V V S N Y+++A + L++ K + T+ F F I
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTD 947
G ED+ + I+N++ E+ KL+GH + A NI+ S+ +D + W +D
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968
+K L GH K ++ + FS N L SS +D + W + K+I+ +G
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 74
Query: 969 TRVQFHSDQVRLL-VNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN----SQL 1023
+ V + SD L+ + + L I+D S +C++ S+ + CN S L
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQSNL 127
Query: 1024 IYATFTDGSIGVFD 1037
I + D S+ ++D
Sbjct: 128 IVSGSFDESVRIWD 141
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH V+ C + + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 196
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
V+F ILAA DN +K WD L + F+ G +V
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 650 TTADQGIKILAN 661
+ ++ + + N
Sbjct: 257 SGSEDNMVYIWN 268
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 11/204 (5%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V V S N ++ S+ K + ++ + K T + +A+ D+N++
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSAS 87
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954
+D T++I++V + LKGH ++ F+ N++VS D + W+ T K+
Sbjct: 88 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKT 147
Query: 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA-IYDGSKMECIRQWVPQDVLSSPIS 1013
LPA PV + V F+ D ++ + L I+D + +C++ + D + P+S
Sbjct: 148 ----LPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVS 199
Query: 1014 SAAYSCNSQLIYATFTDGSIGVFD 1037
+S N + I A D + ++D
Sbjct: 200 FVKFSPNGKYILAATLDNDLKLWD 223
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 19/214 (8%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 124
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G L H PV +V H + I S++ DG + W
Sbjct: 125 -IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDT 181
Query: 529 DN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
+ + + +D D P + + + +S +G + + D+ L W+ S+G +TY G
Sbjct: 182 ASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNDLKLWDYSKGKCLKTYTG 235
Query: 586 FR-KKSAGVVQFDTTRNRILAAG-EDNQIKFWDM 617
+ +K F T + + +G EDN + W++
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 40/211 (18%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP---------------------- 387
V +F+P L+V G D + +WDV L + P
Sbjct: 113 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Query: 388 ----FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND 443
+IWD + S ++ D + VS V +SP+G +I A + + L+ Y S
Sbjct: 172 YDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDY--SKG 227
Query: 444 LCQSLEIDAHVGGVNDLAFSYPNKQLC----IVTCGDDKLIRVWDLSGRKLFQ-FEGHEA 498
C + + G N+ + N + IV+ +D ++ +W+L +++ Q +GH
Sbjct: 228 KC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTD 283
Query: 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V S H ENI + D IK W D
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 11/176 (6%)
Query: 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTML 548
+F GH V SV N ++ S++ D IK W YD + L + +
Sbjct: 19 MFTLAGHTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVA 75
Query: 549 YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGE 608
+S+D + L S D L W+ S G +T G F+ N I++
Sbjct: 76 WSSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSF 130
Query: 609 DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
D ++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 131 DESVRIWDVKTGMCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAI 892
V V S N Y+++A + L++ K + T+ F F I
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTD 947
G ED+ + I+N++ E+ KL+GH + A NI+ S+ +D + W +D
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQ 972
L GH K ++ + FS N L SS +D + W + K+I+ +G + V
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGISDVA 75
Query: 973 FHSDQVRLL-VNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN----SQLIYAT 1027
+ SD L+ + + L I+D S +C++ S+ + CN S LI +
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQSNLIVSG 128
Query: 1028 FTDGSIGVFD 1037
D S+ ++D
Sbjct: 129 SFDESVRIWD 138
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH V+ C + + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 196
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
V+F ILAA DN +K WD L + F+ G +V
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 650 TTADQGIKILAN 661
+ ++ + + N
Sbjct: 257 SGSEDNMVYIWN 268
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
D+N++ +D T++I++V + LKGH ++ F+ N++VS D + W+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 946 TDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA-IYDGSKMECIRQWVP 1004
T K+ LPA PV + V F+ D ++ + L I+D + +C++ +
Sbjct: 139 VKTGMCLKT----LPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 1005 QDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037
D + P+S +S N + I A D ++ ++D
Sbjct: 193 DD--NPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 19/214 (8%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 124
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G L H PV +V H + I S++ DG + W
Sbjct: 125 -IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDT 181
Query: 529 DN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
+ + + +D D P + + + +S +G + + D+ L W+ S+G +TY G
Sbjct: 182 ASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTG 235
Query: 586 FR-KKSAGVVQFDTTRNRILAAG-EDNQIKFWDM 617
+ +K F T + + +G EDN + W++
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 40/211 (18%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP---------------------- 387
V +F+P L+V G D + +WDV L + P
Sbjct: 113 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Query: 388 ----FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND 443
+IWD + S ++ D + VS V +SP+G +I A + + L+ Y S
Sbjct: 172 YDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY--SKG 227
Query: 444 LCQSLEIDAHVGGVNDLAFSYPNKQLC----IVTCGDDKLIRVWDLSGRKLFQ-FEGHEA 498
C + + G N+ + N + IV+ +D ++ +W+L +++ Q +GH
Sbjct: 228 KC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTD 283
Query: 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V S H ENI + D IK W D
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 11/176 (6%)
Query: 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTML 548
+F GH V SV N ++ S++ D IK W YD + L + +
Sbjct: 19 MFTLAGHTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVA 75
Query: 549 YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGE 608
+S+D + L S D L W+ S G +T G F+ N I++
Sbjct: 76 WSSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSF 130
Query: 609 DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
D ++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 131 DESVRIWDVKTGMCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAI 892
V V S N Y+++A + L++ K + T+ F F I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTD 947
G ED+ + I+N++ E+ KL+GH + A NI+ S+ +D + W +D
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQ 972
L GH K ++ + FS N L SS +D + W + K+I+ +G + V
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGISDVA 75
Query: 973 FHSDQVRLL-VNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN----SQLIYAT 1027
+ SD L+ + + L I+D S +C++ S+ + CN S LI +
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQSNLIVSG 128
Query: 1028 FTDGSIGVFD 1037
D S+ ++D
Sbjct: 129 SFDESVRIWD 138
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLAASSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH V+ C + + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 196
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
V+F ILAA DN +K WD L + F+ G +V
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 650 TTADQGIKILAN 661
+ ++ + + N
Sbjct: 257 SGSEDNLVYIWN 268
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
D+N++ +D T++I++V + LKGH ++ F+ N++VS D + W+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 946 TDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA-IYDGSKMECIRQWVP 1004
T + K+ LPA PV + V F+ D ++ + L I+D + +C++ +
Sbjct: 139 VKTGKCLKT----LPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 1005 QDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037
D + P+S +S N + I A D ++ ++D
Sbjct: 193 DD--NPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 124
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G+ L H PV +V H + I S++ DG + W
Sbjct: 125 -IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDT 181
Query: 529 DN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
+ + + +D D P + + + +S +G + + D+ L W+ S+G +TY G
Sbjct: 182 ASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTG 235
Query: 586 FR-KKSAGVVQFDTTRNRILAAG-EDNQIKFWDM 617
+ +K F T + + +G EDN + W++
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 44/213 (20%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP---------------------- 387
V +F+P L+V G D + +WDV + L + P
Sbjct: 113 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Query: 388 ----FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND 443
+IWD + S ++ D + VS V +SP+G +I A + + L+ Y S
Sbjct: 172 YDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY--SKG 227
Query: 444 LCQSLEIDAHVGGVNDLAFSYPNKQLC----IVTCGDDKLIRVWDLSGRKLFQ-FEGHEA 498
C + + G N+ + N + IV+ +D L+ +W+L +++ Q +GH
Sbjct: 228 KC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 283
Query: 499 PVYSVCPHQKENIHFIFSTAV--DGKIKAWLYD 529
V S H ENI I S A+ D IK W D
Sbjct: 284 VVISTACHPTENI--IASAALENDKTIKLWKSD 314
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 88/192 (45%), Gaps = 19/192 (9%)
Query: 854 GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL 913
G+ S F N+ + T A + + F P + +A D I+I+ + + +
Sbjct: 6 GRGSEFVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLAASSADKLIKIWGAYDGKFEKTI 64
Query: 914 KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF 973
GH+ I+ +A+S++ N+LVS+ D L W+ + + K++ G + F
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK----------GHSNYVF 114
Query: 974 HSD---QVRLLV--NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028
+ Q L+V + + + I+D +C++ +P S P+S+ ++ + LI ++
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAH--SDPVSAVHFNRDGSLIVSSS 171
Query: 1029 TDGSIGVFDADS 1040
DG ++D S
Sbjct: 172 YDGLCRIWDTAS 183
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTMLY 549
F GH V SV N ++ +++ D IK W YD + L + + +
Sbjct: 20 FTLAGHTKAVSSV--KFSPNGEWLAASSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAW 76
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
S+D + L S D L W+ S G +T G F+ N I++ D
Sbjct: 77 SSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFD 131
Query: 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAI 892
V V S N Y+++A + L++ K + T+ F F I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTD 947
G ED+ + I+N++ E+ KL+GH + A NI+ S+ +D + W +D
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH V+ C + + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 196
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
V+F ILAA DN +K WD L + F+ G +V
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 650 TTADQGIKILAN 661
+ ++ + + N
Sbjct: 257 SGSEDNLVYIWN 268
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V V S N ++ S+ K + ++ + K T + +A+ D+N++
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSAS 87
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954
+D T++I++V + LKGH ++ F+ N++VS D + W+ T + K+
Sbjct: 88 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 147
Query: 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA-IYDGSKMECIRQWVPQDVLSSPIS 1013
LPA PV + V F+ D ++ + L I+D + +C++ + D + P+S
Sbjct: 148 ----LPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVS 199
Query: 1014 SAAYSCNSQLIYATFTDGSIGVFD 1037
+S N + I A D ++ ++D
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWD 223
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 23/216 (10%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 124
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G+ L H PV +V H + I S++ DG + W
Sbjct: 125 -IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIW-- 179
Query: 529 DNVGSR-----VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583
D + +D D P + + + +S +G + + D+ L W+ S+G +TY
Sbjct: 180 DTASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTY 233
Query: 584 IGFR-KKSAGVVQFDTTRNRILAAG-EDNQIKFWDM 617
G + +K F T + + +G EDN + W++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTMLY 549
F GH V SV N ++ S++ D IK W YD + L + + +
Sbjct: 20 FTLAGHTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAW 76
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
S+D + L S D L W+ S G +T G F+ N I++ D
Sbjct: 77 SSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFD 131
Query: 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAI 892
V V S N Y+++A + L++ K + T+ F F I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS 935
G ED+ + I+N++ E+ KL+GH + A NI+ S+
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968
+K L GH K ++ + FS N L SS +D + W + K+I+ +G
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 71
Query: 969 TRVQFHSDQVRLL-VNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN----SQL 1023
+ V + SD L+ + + L I+D S +C++ S+ + CN S L
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQSNL 124
Query: 1024 IYATFTDGSIGVFD 1037
I + D S+ ++D
Sbjct: 125 IVSGSFDESVRIWD 138
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
+VS V +SP+G ++ + LI ++ G+ D I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 471 IVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
V+ DDK +++WD+S G+ L +GH V+ C + + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A + + ++ DGS + S +S +G + W+ + G +T I
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNP 196
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
V+F ILAA DN +K WD L + F+ G +V
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 650 TTADQGIKILAN 661
+ ++ + + N
Sbjct: 257 SGSEDNLVYIWN 268
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V V S N ++ S+ K + ++ + K T + +A+ D+N++
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSAS 87
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954
+D T++I++V + LKGH ++ F+ N++VS D + W+ T + K+
Sbjct: 88 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 147
Query: 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA-IYDGSKMECIRQWVPQDVLSSPIS 1013
LPA PV + V F+ D ++ + L I+D + +C++ + D + P+S
Sbjct: 148 ----LPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVS 199
Query: 1014 SAAYSCNSQLIYATFTDGSIGVFD 1037
+S N + I A D ++ ++D
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWD 223
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
+ +S VAWS D N + A + ++ L + H V F+ P L
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFN-PQSNL 124
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
IV+ D+ +R+WD+ +G+ L H PV +V H + I S++ DG + W
Sbjct: 125 -IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDT 181
Query: 529 DN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
+ + + +D D P + + + +S +G + + D+ L W+ S+G +TY G
Sbjct: 182 ASGQCLKTLIDDDNPPV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTG 235
Query: 586 FR-KKSAGVVQFDTTRNRILAAG-EDNQIKFWDM 617
+ +K F T + + +G EDN + W++
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDYDAPGLWCTTMLY 549
F GH V SV N ++ S++ D IK W YD + L + + +
Sbjct: 20 FTLAGHTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAW 76
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
S+D + L S D L W+ S G +T G F+ N I++ D
Sbjct: 77 SSDSNLL----VSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFD 131
Query: 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
++ WD+ L + A + + FN++G+L+V ++ D +I A G
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAI 892
V V S N Y+++A + L++ K + T+ F F I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS 935
G ED+ + I+N++ E+ KL+GH + A NI+ S+
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968
+K L GH K ++ + FS N L SS +D + W + K+I+ +G
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 71
Query: 969 TRVQFHSDQVRLL-VNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN----SQL 1023
+ V + SD L+ + + L I+D S +C++ S+ + CN S L
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQSNL 124
Query: 1024 IYATFTDGSIGVFD 1037
I + D S+ ++D
Sbjct: 125 IVSGSFDESVRIWD 138
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 119/275 (43%), Gaps = 26/275 (9%)
Query: 386 KPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLC 445
K K+W+ + +LQ + S SV+ VA+ PDG I A + L+ G L
Sbjct: 243 KTVKLWNRNG--QLLQ--TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLL 296
Query: 446 QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCP 505
Q+L H V +AFS P+ Q I + DDK +++W+ +G+ L GH + V+ V
Sbjct: 297 QTLT--GHSSSVWGVAFS-PDGQ-TIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAF 352
Query: 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTT--MLYSADGSRLFSCGTSK 563
+ I S + D +K W N ++ G + + +S DG + S
Sbjct: 353 --SPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA---- 403
Query: 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623
D + WN G L +T G GV F I +A +D +K W+ + +
Sbjct: 404 SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA-FSPDDQTIASASDDKTVKLWNRNGQLLQ 461
Query: 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
T T G S+ + F+ +G + + D+ +K+
Sbjct: 462 TLT---GHSSSVRGVAFSPDGQTIASASDDKTVKL 493
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 109/251 (43%), Gaps = 20/251 (7%)
Query: 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQ 468
S SV VA+SPDG I A + L+ G L Q+L H V +AFS P+ Q
Sbjct: 16 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVWGVAFS-PDGQ 70
Query: 469 LCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
I + DDK +++W+ +G+ L GH + V V + I S + D +K W
Sbjct: 71 -TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF--SPDGQTIASASDDKTVKLWNR 127
Query: 529 DN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR 587
+ + + + +W + +S DG + S D + WN G L +T G
Sbjct: 128 NGQLLQTLTGHSSSVWG--VAFSPDGQTIASA----SDDKTVKLWNR-NGQLLQTLTGHS 180
Query: 588 KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL 647
GV F I +A +D +K W+ + + T T G S+ + F+ +G +
Sbjct: 181 SSVWGVA-FSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHSSSVRGVAFSPDGQTI 236
Query: 648 VVTTADQGIKI 658
+ D+ +K+
Sbjct: 237 ASASDDKTVKL 247
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 26/275 (9%)
Query: 386 KPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLC 445
K K+W+ + +LQ + S SV VA+SPDG I A + L+ G L
Sbjct: 120 KTVKLWNRNG--QLLQ--TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLL 173
Query: 446 QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCP 505
Q+L H V +AFS P+ Q I + DDK +++W+ +G+ L GH + V V
Sbjct: 174 QTLT--GHSSSVWGVAFS-PDGQ-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF 229
Query: 506 HQKENIHFIFSTAVDGKIKAWLYDN--VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563
+ I S + D +K W + + + + + + + DG + S
Sbjct: 230 --SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS---VNGVAFRPDGQTIASA---- 280
Query: 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623
D + WN G L +T G GV F I +A +D +K W+ + ++
Sbjct: 281 SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNRNGQHLQ 338
Query: 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
T T G S+ + F+ +G + + D+ +K+
Sbjct: 339 TLT---GHSSSVWGVAFSPDGQTIASASDDKTVKL 370
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 386 KPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLC 445
K K+W+ + +LQ + S SV VA+SPDG I A + L+ G L
Sbjct: 448 KTVKLWNRNG--QLLQ--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLL 501
Query: 446 QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCP 505
Q+L H V +AFS P+ Q I + DDK +++W+ +G+ L GH + V+ V
Sbjct: 502 QTLT--GHSSSVRGVAFS-PDGQ-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF 557
Query: 506 HQKENIHFIFSTAVDGKIKAW 526
+ I S + D +K W
Sbjct: 558 --SPDGQTIASASSDKTVKLW 576
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 18/212 (8%)
Query: 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQK 508
++AH V +AFS P+ Q I + DDK +++W+ +G+ L GH + V+ V
Sbjct: 11 RLEAHSSSVRGVAFS-PDGQ-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF--S 66
Query: 509 ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTT--MLYSADGSRLFSCGTSKEGD 566
+ I S + D +K W N ++ G + + +S DG + S D
Sbjct: 67 PDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA----SDD 119
Query: 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST 626
+ WN G L +T G GV F I +A +D +K W+ + + T T
Sbjct: 120 KTVKLWNR-NGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNRNGQLLQTLT 177
Query: 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
G S+ + F+ +G + + D+ +K+
Sbjct: 178 ---GHSSSVWGVAFSPDGQTIASASDDKTVKL 206
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 28/210 (13%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V VA S + + SA K V L+N N +++ T + +AF P D+ IA
Sbjct: 388 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASAS 445
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954
+D T++++N R ++ L GH + G+AFS + + S+ D + WN R
Sbjct: 446 DDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN------RNG 498
Query: 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL------ 1008
+Q G HS VR + I S + ++ W L
Sbjct: 499 QLLQTLTG-----------HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 547
Query: 1009 -SSPISSAAYSCNSQLIYATFTDGSIGVFD 1037
SS + A+S + Q I + +D ++ +++
Sbjct: 548 HSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V VA S + + SA K V L+N N +++ T + +AF P D IA
Sbjct: 19 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASAS 76
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
+D T++++N R ++ L GH + G+AFS + + S+ D + WN
Sbjct: 77 DDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V VA S + + SA K V L+N N +++ T + +AF P D IA
Sbjct: 60 VWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASAS 117
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
+D T++++N R ++ L GH + G+AFS + + S+ D + WN
Sbjct: 118 DDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V VA S + + SA K V L+N N +++ T + +AF P D IA
Sbjct: 142 VWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASAS 199
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
+D T++++N R ++ L GH + G+AFS + + S+ D + WN
Sbjct: 200 DDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V VA S + + SA K V L+N N + + T + +AF P D IA
Sbjct: 306 VWGVAFSPDGQTIASASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFSP-DGQTIASAS 363
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
+D T++++N R ++ L GH + G+AFS + + S+ D + WN
Sbjct: 364 DDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 122/276 (44%), Gaps = 27/276 (9%)
Query: 394 SNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAH 453
S CS L ++ S VS VA S +GNF A H + L+ Q N CQ + H
Sbjct: 52 SECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ--NGQCQ-YKFLGH 108
Query: 454 VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE--GHEAPVYSVCPHQKENI 511
V +AFS N+Q IV+ G D +RVW++ G + H V V +
Sbjct: 109 TKDVLSVAFSPDNRQ--IVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL--WCTTMLYSADGSRLFSCGTSKEGDSHL 569
I S D +K W D R+ D G + T++ S DGS S + K+G + L
Sbjct: 167 PVIVSGGWDNLVKVW--DLATGRLVTDLKGHTNYVTSVTVSPDGSLCAS--SDKDGVARL 222
Query: 570 VEWNESEG-ALKRTYIGFRKKSAGVVQFDTTRNRI-LAAGEDNQIKFWDMDNVNMLT--S 625
W+ ++G AL G A + Q + NR + A + I+ +D++N +++ +
Sbjct: 223 --WDLTKGEALSEMAAG-----APINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELA 275
Query: 626 TEAEGG---LPSLPRLRFNKEGNLLVVTTADQGIKI 658
E +G +P + ++ +G+ L D I++
Sbjct: 276 PEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRV 311
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 101/243 (41%), Gaps = 48/243 (19%)
Query: 839 VALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS 897
VALS N ++ +SA + L+N+ N + F+ +AF P + I++ G D+
Sbjct: 73 VALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVS-GGRDN 131
Query: 898 TIQIYNVRVDEVKTKLKG-HQKHITGLAFSTNLN--ILVSSGSDAQLIFWNTDT------ 948
++++NV+ + + T +G H ++ + FS +L+ ++VS G D + W+ T
Sbjct: 132 ALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD 191
Query: 949 -------------------------------WEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977
W+ K A+ A P+ + + F ++
Sbjct: 192 LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQ--ICFSPNR 249
Query: 978 VRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPI----SSAAYSCNSQLIYATFTDGSI 1033
+ E + I+D + I + P+ S I S A+S + +Y+ +TD I
Sbjct: 250 YWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVI 309
Query: 1034 GVF 1036
V+
Sbjct: 310 RVW 312
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 388 FKIWDMSNCSMMLQ-AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQ 446
++W++ N + KD V VA+SPD I + + ++ +G +
Sbjct: 91 LRLWNLQNGQCQYKFLGHTKD----VLSVAFSPDNRQIVSGGRDNALRVWNVKG--ECMH 144
Query: 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSV 503
+L AH V+ + FS IV+ G D L++VWDL +GR + +GH V SV
Sbjct: 145 TLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 912 KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
+L+GH ++ +A S N N VS+ D L WN
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWN 95
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 2/128 (1%)
Query: 833 EDVVPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNII- 890
ED V C A S +DSY+ + K V +++ K++ T+ F + N+++
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 891 AIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWE 950
A G D ++++++ E + + GH + FS + +L S +D L W+ +
Sbjct: 717 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776
Query: 951 KRKSIAIQ 958
+RKSI ++
Sbjct: 777 ERKSINVK 784
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 822 LLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPAST-FL 880
L + D PE+ E +V C + S + ++ A KV LF++ ++ + ++ +
Sbjct: 787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC 846
Query: 881 AFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQ 940
F P D ++ I + ++++N+ +GH + G+ FS + + +++ D
Sbjct: 847 DFSPYD-HLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905
Query: 941 LIFWNTDTWEKRKSIAIQ 958
+ W T K +I ++
Sbjct: 906 IRVWETKKVCKNSAIVLK 923
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 873 PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNIL 932
P + + A QD IA D T+Q++ E +K H+ + AFS++ + +
Sbjct: 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYI 672
Query: 933 VSSGSDAQLIFWNTDT 948
+ +D ++ W++ T
Sbjct: 673 ATCSADKKVKIWDSAT 688
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 400 LQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVND 459
L +V+ + +V +S DG I + ++ + L L+I AH V
Sbjct: 606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLC 662
Query: 460 LAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV 519
AFS + I TC DK +++WD + KL + + C ++ H + +T
Sbjct: 663 CAFSSDDSY--IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 720
Query: 520 -DGKIKAW 526
D +K W
Sbjct: 721 NDFFLKLW 728
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 890 IAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948
+A G ED I+I + + V + GH+K + + F+ + L+SS D+ + WN T
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 92/518 (17%), Positives = 180/518 (34%), Gaps = 79/518 (15%)
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVCPHQKE 509
D H VN F+ + L + T +D +++WDL+ ++ GH V + C +
Sbjct: 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPD 754
Query: 510 NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT-SKEGDSH 568
+ + S + DG ++ W + R + + ++ D + C + S +GD
Sbjct: 755 D-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 813
Query: 569 LVEWN--------ESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620
+V + G L + G + F + + A ++ W++D
Sbjct: 814 IVAAKNKVLLFDIHTSGLLAEIHTG-HHSTIQYCDFSPYDHLAVIALSQYCVELWNID-- 870
Query: 621 NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSR 680
+ L + G L + + F+ +G+ + + DQ I++ + + + +
Sbjct: 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVF 930
Query: 681 ASTEMKVPGSAVVTTITPVLSKAERVDR----------SSPARPSTILNGADSAARGIEK 730
E V + + + K ++D SP D A + IE
Sbjct: 931 QENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL 990
Query: 731 PRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGV 790
P N RV + A V + +T G +++ + V
Sbjct: 991 PNN----------------------RVFSSGVGHKKA--VRHIQFTADGKTLISSSEDSV 1026
Query: 791 QKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMS 850
++W W +G A Q LL DS ++S
Sbjct: 1027 IQVWNWQ------TGDYVFLQAHQETVKDFRLL--------------------QDSRLLS 1060
Query: 851 -AGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV 909
+ G V ++N++ ++ F A D + D T +I++ +
Sbjct: 1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI-SSDATKFSSTSADKTAKIWSFDLLSP 1119
Query: 910 KTKLKGHQKHITGLAFSTNLNILVSSGSD-AQLIFWNT 946
+LKGH + AFS + IL+++G D ++ WN
Sbjct: 1120 LHELKGHNGCVRCSAFSLD-GILLATGDDNGEIRIWNV 1156
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 2/128 (1%)
Query: 833 EDVVPCVALSKNDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNII- 890
ED V C A S +DSY+ + K V +++ K++ T+ F + N+++
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 891 AIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWE 950
A G D ++++++ E + + GH + FS + +L S +D L W+ +
Sbjct: 724 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 783
Query: 951 KRKSIAIQ 958
+RKSI ++
Sbjct: 784 ERKSINVK 791
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 822 LLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPAST-FL 880
L + D PE+ E +V C + S + ++ A KV LF++ ++ + ++ +
Sbjct: 794 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC 853
Query: 881 AFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQ 940
F P D ++ I + ++++N+ +GH + G+ FS + + +++ D
Sbjct: 854 DFSPYD-HLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 912
Query: 941 LIFWNTDTWEKRKSIAIQ 958
+ W T K +I ++
Sbjct: 913 IRVWETKKVCKNSAIVLK 930
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 873 PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNIL 932
P + + A QD IA D T+Q++ E +K H+ + AFS++ + +
Sbjct: 620 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYI 679
Query: 933 VSSGSDAQLIFWNTDT 948
+ +D ++ W++ T
Sbjct: 680 ATCSADKKVKIWDSAT 695
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 400 LQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVND 459
L +V+ + +V +S DG I + ++ + L L+I AH V
Sbjct: 613 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLC 669
Query: 460 LAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV 519
AFS + I TC DK +++WD + KL + + C ++ H + +T
Sbjct: 670 CAFSSDDSY--IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 727
Query: 520 -DGKIKAW 526
D +K W
Sbjct: 728 NDFFLKLW 735
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 890 IAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948
+A G ED I+I + + V + GH+K + + F+ + L+SS D+ + WN T
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1041
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 92/518 (17%), Positives = 180/518 (34%), Gaps = 79/518 (15%)
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVCPHQKE 509
D H VN F+ + L + T +D +++WDL+ ++ GH V + C +
Sbjct: 703 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPD 761
Query: 510 NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT-SKEGDSH 568
+ + S + DG ++ W + R + + ++ D + C + S +GD
Sbjct: 762 D-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 820
Query: 569 LVEWN--------ESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620
+V + G L + G + F + + A ++ W++D
Sbjct: 821 IVAAKNKVLLFDIHTSGLLAEIHTG-HHSTIQYCDFSPYDHLAVIALSQYCVELWNID-- 877
Query: 621 NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSR 680
+ L + G L + + F+ +G+ + + DQ I++ + + + +
Sbjct: 878 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVF 937
Query: 681 ASTEMKVPGSAVVTTITPVLSKAERVDR----------SSPARPSTILNGADSAARGIEK 730
E V + + + K ++D SP D A + IE
Sbjct: 938 QENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL 997
Query: 731 PRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGV 790
P N RV + A V + +T G +++ + V
Sbjct: 998 PNN----------------------RVFSSGVGHKKA--VRHIQFTADGKTLISSSEDSV 1033
Query: 791 QKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMS 850
++W W +G A Q LL DS ++S
Sbjct: 1034 IQVWNWQ------TGDYVFLQAHQETVKDFRLL--------------------QDSRLLS 1067
Query: 851 -AGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV 909
+ G V ++N++ ++ F A D + D T +I++ +
Sbjct: 1068 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI-SSDATKFSSTSADKTAKIWSFDLLSP 1126
Query: 910 KTKLKGHQKHITGLAFSTNLNILVSSGSD-AQLIFWNT 946
+LKGH + AFS + IL+++G D ++ WN
Sbjct: 1127 LHELKGHNGCVRCSAFSLD-GILLATGDDNGEIRIWNV 1163
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 77/169 (45%), Gaps = 9/169 (5%)
Query: 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNII- 890
ED V C A S +D ++ + KV ++N M +++ T+ F ++++
Sbjct: 663 EDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLL 722
Query: 891 AIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWE 950
A G D ++++++ E + + GH + FS + +L S +D L W+ +
Sbjct: 723 ATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Query: 951 KRKSIAIQL-------PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYD 992
+RKSI ++ P + V + +D R++V + ++ ++D
Sbjct: 783 ERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFD 831
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 89/209 (42%), Gaps = 22/209 (10%)
Query: 787 SNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846
++G KLW AT+A + L D E+ E +V C + S + +
Sbjct: 769 ADGTLKLWD-----------ATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGA 817
Query: 847 YVMSAGGGKVSLFNMMNFKVMTTFMSPPPAST-FLAFHPQDNNIIAIGMEDSTIQIYNVR 905
+M A K+ LF++ ++ + ++ + F PQ N++ + + ++++N
Sbjct: 818 RIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQ-NHLAVVALSQYCVELWNTD 876
Query: 906 VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP 965
+GH + G+ FS + + ++S D + W T K ++ ++
Sbjct: 877 SRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLK------- 929
Query: 966 VGETRVQFHSDQVRLL-VNHETQLAIYDG 993
E V F ++V +L V+H +L + +G
Sbjct: 930 -QEVDVVFQENEVMVLAVDHIRRLQLING 957
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 873 PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNIL 932
P + + A +D IA D T+Q++ E ++K H+ + AFST+ +
Sbjct: 619 PHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFI 678
Query: 933 VSSGSDAQLIFWNTDTWE 950
+ D ++ WN+ T E
Sbjct: 679 ATCSVDKKVKIWNSMTGE 696
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 890 IAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTW 949
IA G E+ I+I + + + H+K + + F+ + L+SS DA++ WN W
Sbjct: 982 IAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN---W 1038
Query: 950 EKRKSIAIQ 958
+ K I ++
Sbjct: 1039 QLDKCIFLR 1047
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 104/283 (36%), Gaps = 56/283 (19%)
Query: 405 VKDSSISVSRVAWSPDGNFIGV-----------AFTKHLIHLYTYQGSNDLCQSLEIDAH 453
+K V A+S D FI + T L+H Y D H
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTY--------------DEH 704
Query: 454 VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVCPHQKENIH 512
VN F+ + L + T D +++WDL+ ++ GH V + C ++
Sbjct: 705 SEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPDD-K 762
Query: 513 FIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW---------------CTTMLYSADGSRLF 557
+ S + DG +K W + R + + C + +SADG+R+
Sbjct: 763 LLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCS--WSADGARIM 820
Query: 558 SCGTSK--EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFW 615
+K D H + G L + G + F + + A ++ W
Sbjct: 821 VAAKNKIFLFDIH------TSGLLGEIHTG-HHSTIQYCDFSPQNHLAVVALSQYCVELW 873
Query: 616 DMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
+ D+ + + + G L + + F+ +G+ + ++ DQ I++
Sbjct: 874 NTDSRSKV--ADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRL 914
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 107/269 (39%), Gaps = 40/269 (14%)
Query: 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPH 506
L++ H GGV L +++ +V+ D+ +RVWD+ G FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVD----YDAP-----------------GLWCT 545
+ +NI +I + + D + W S D +D P G +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI--GFRKKSAGVVQFDTTRNRI 603
S G+ + S D+ L+ W+ ++ +K YI G + + +D R R
Sbjct: 273 VRTVSGHGNIV----VSGSYDNTLIVWDVAQ--MKCLYILSGHTDRIYSTI-YDHERKRC 325
Query: 604 LAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663
++A D I+ WD++N ++ + + L L RL LV AD I+ D
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL----SDKFLVSAAADGSIRGWDAND 381
Query: 664 GLRALRAIETR--AYETSRASTEMKVPGS 690
R T A T S + V GS
Sbjct: 382 YSRKFSYHHTNLSAITTFYVSDNILVSGS 410
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 103/263 (39%), Gaps = 28/263 (10%)
Query: 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPH 506
L++ H GGV L +++ +V+ D+ +RVWD+ G FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVD----YDAPGLWCT--------TMLYSADGS 554
+ +NI +I + + D + W S D +D P ++ T +L S
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 555 RLFSCG-----TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
G S D+ L+ W+ ++ G + + +D R R ++A D
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTI-YDHERKRCISASXD 331
Query: 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALR 669
I+ WD++N + + + L L RL LV AD I+ D R
Sbjct: 332 TTIRIWDLENGELXYTLQGHTALVGLLRL----SDKFLVSAAADGSIRGWDANDYSRKFS 387
Query: 670 AIETR--AYETSRASTEMKVPGS 690
T A T S + V GS
Sbjct: 388 YHHTNLSAITTFYVSDNILVSGS 410
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 97/240 (40%), Gaps = 48/240 (20%)
Query: 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAI 404
+ SSV ++ F+ +L G +GEI IWDM+ C+
Sbjct: 111 NHSSSVKTVKFNAKQDNVLASGGNNGEIF----------------IWDMNKCTESPSNYT 154
Query: 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY 464
S+S V I +A+ + L H++ GS++ ++ A ++ L+++
Sbjct: 155 PLTPGQSMSSV-----DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIH-LSYTS 208
Query: 465 PN----KQLCIVT--------------CGDDKLIRVWDL-SGRKLFQF--EGHEAPVYSV 503
PN +QL +V +D I +WDL + Q +GH+ + S+
Sbjct: 209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSL 268
Query: 504 --CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561
C HQ E H + S+ D + W ++ + A G WC ++ + LF+C +
Sbjct: 269 DWC-HQDE--HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 78/158 (49%), Gaps = 18/158 (11%)
Query: 818 PSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGK--VSLFNMMNFKVMTTFMSPPP 875
PSN +T ++ D V +A +++ ++V ++ G S++++ K + P
Sbjct: 150 PSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSP 209
Query: 876 AS------TFLAFHPQDNNIIAIGM---EDSTIQIYNVRVDE--VKTKLKGHQKHITGLA 924
S + + +HP+++ +A D +I I+++R ++T +GHQK I L
Sbjct: 210 NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLD 269
Query: 925 FS-TNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA 961
+ + ++L+SSG D ++ WN ++ E+ Q PA
Sbjct: 270 WCHQDEHLLLSSGRDNTVLLWNPESAEQLS----QFPA 303
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 28/224 (12%)
Query: 450 IDAHVGGVNDLAFSYPNKQLCI-VTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVC--P 505
+ H V+DLA S N C ++ DK +R+WDL +G +F GH++ VYSV P
Sbjct: 72 LTGHNHFVSDLALSQEN---CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Query: 506 HQKENIHFIFSTAVDGKIKAW--LYDNVGSRVDYDAPGLWCTTMLY-----SADGSRLFS 558
++ I S + +IK W L + S + + W + + Y SA+ + F+
Sbjct: 129 DNRQ----ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFA 184
Query: 559 CGTSKEG-DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN--RILAAGEDNQIKFW 615
+ G D L WN + ++ T F+ + V + N I G+D ++ W
Sbjct: 185 PYFASVGWDGRLKVWN-TNFQIRYT---FKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Query: 616 DMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
D+ N+ E + G ++ ++ FN + + V T DQG+KI
Sbjct: 241 DILNLTY-PQREFDAG-STINQIAFNPKLQWVAVGT-DQGVKIF 281
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 885 QDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFW 944
Q+N D T++++++R + GHQ + +AFS + ++S+G++ ++ W
Sbjct: 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Query: 945 N 945
N
Sbjct: 146 N 146
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/157 (18%), Positives = 67/157 (42%), Gaps = 21/157 (13%)
Query: 896 DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955
D ++++N +++ K H+ ++ L+ S N + + G D +L+ W+ +
Sbjct: 193 DGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI--------L 243
Query: 956 AIQLPAGKLPVGET--RVQFHSDQVRLLVNHETQLAIYD----------GSKMECIRQWV 1003
+ P + G T ++ F+ + V + + I++ + E I +
Sbjct: 244 NLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAE 303
Query: 1004 PQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040
Q + +S A++ + ++A FTDG I F ++
Sbjct: 304 GQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 19/176 (10%)
Query: 363 LVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422
L+ D I LWD+ V K K+ D A+V+D S + +
Sbjct: 193 LLSASDDHTICLWDISA----VPKEGKVVDAKTI-FTGHTAVVEDVSWHLLH-----ESL 242
Query: 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482
F VA + L+ ++ + +N S +DAH VN L+F+ P + + T DK + +
Sbjct: 243 FGSVADDQKLM-IWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFILATGSADKTVAL 300
Query: 483 WDLSG--RKLFQFEGHEAPVYSV--CPHQKENIHFIFSTAVDGKIKAWLYDNVGSR 534
WDL KL FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 301 WDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLNVWDLSKIGEE 353
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFS-TNLNILVSSGS 937
L+F+P I+A G D T+ ++++R ++K + H+ I + +S N IL SSG+
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 338
Query: 938 DAQLIFWN 945
D +L W+
Sbjct: 339 DRRLNVWD 346
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 17/181 (9%)
Query: 882 FHPQDNNIIAIGMEDSTIQIYNVRVDEVK----------TKLKGHQKHITGLAFSTNLN- 930
+ PQ+ IIA S + +++ K +L+GHQK GL+++ NL+
Sbjct: 132 YMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSG 191
Query: 931 ILVSSGSDAQLIFWNTDTWEKRKSI--AIQLPAGKLPVGETRVQFHSDQVRLL--VNHET 986
L+S+ D + W+ K + A + G V E V +H L V +
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED-VSWHLLHESLFGSVADDQ 250
Query: 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT-DGSIGVFDADSLRLRC 1045
+L I+D + D ++ ++ +++ S+ I AT + D ++ ++D +L+L+
Sbjct: 251 KLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 310
Query: 1046 R 1046
Sbjct: 311 H 311
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 17/184 (9%)
Query: 465 PNKQLCIVTCGDDKLIRVWDLSG----RKLFQ----FEGHEAPVYSVCPHQKENIHFIFS 516
PN +++ DD I +WD+S K+ F GH A V V H F S
Sbjct: 187 PNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLF-GS 245
Query: 517 TAVDGKIKAW-LYDNVGSRVDY--DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573
A D K+ W N S+ + DA + ++ + + G++ D + W+
Sbjct: 246 VADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA---DKTVALWD 302
Query: 574 ESEGALKRTYIGFRKKSAGVVQFDTTRNRILA-AGEDNQIKFWDMDNVNMLTSTE-AEGG 631
LK K VQ+ ILA +G D ++ WD+ + S E AE G
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDG 362
Query: 632 LPSL 635
P L
Sbjct: 363 PPEL 366
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Query: 804 SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNM 861
SG V +W+ + L T E E V CVA + D ++G V ++++
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTF---EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 862 M----NFKVMTTFMSPPPASTFLAFHP-QDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH 916
NF + T ++ ++P D + +D TI+I++ + L+GH
Sbjct: 171 GQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 917 QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959
+++ F L I++S D L WN+ T++ K++ + L
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Query: 804 SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNM 861
SG V +W+ + L T E E V CVA + D ++G V ++++
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTF---EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 862 M----NFKVMTTFMSPPPASTFLAFHP-QDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH 916
NF + T ++ ++P D + +D TI+I++ + L+GH
Sbjct: 171 GQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 917 QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959
+++ F L I++S D L WN+ T++ K++ + L
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 105/274 (38%), Gaps = 49/274 (17%)
Query: 390 IWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLY---------TYQG 440
+W+ + S + A D S V+ V WS DG+F+ V L+ +Y T G
Sbjct: 117 VWNADSGS--VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG 174
Query: 441 SNDLCQSLEIDAHV-------GGVNDLAFSYPNKQ--------------------LCIVT 473
L + HV G ++ N Q L + +
Sbjct: 175 HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS 234
Query: 474 CGDDKLIRVWDL-SGRKLFQFEGHEAPVYSV--CPHQKENIHFIFSTAVDGKIKAWLYDN 530
G+D ++++WD S F H A V +V CP Q N+ +D +I W
Sbjct: 235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ-SNLLATGGGTMDKQIHFW-NAA 292
Query: 531 VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS 590
G+RV+ G T++++S + S T D++L W+ S L + +
Sbjct: 293 TGARVNTVDAGSQVTSLIWSPHSKEIMS--THGFPDNNLSIWSYSSSGLTKQVDIPAHDT 350
Query: 591 AGVVQFDTTRNRILA-AGEDNQIKFW---DMDNV 620
+ + RIL+ A D +KFW D D+V
Sbjct: 351 RVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 24/112 (21%)
Query: 836 VPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAF--HPQDNNIIAIG 893
V VAL +N YV +A G VS ++ ST++A D + +++G
Sbjct: 106 VVAVALERN-VYVWNADSGSVSA------------LAETDESTYVASVKWSHDGSFLSVG 152
Query: 894 MEDSTIQIYNVRVDEVKTKLK---GHQKHITGLAFSTNLNILVSSGSDAQLI 942
+ + + IY+V E +TKL+ GHQ + L+++ + ++SSGS + I
Sbjct: 153 LGNGLVDIYDV---ESQTKLRTMAGHQARVGCLSWNRH---VLSSGSRSGAI 198
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 836 VPCVALSKNDSYV-MSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
V V S + S++ + G G V ++++ + + T L++ + ++++ G
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW---NRHVLSSGS 193
Query: 895 EDSTIQIYNVRVDEVKT-KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
I ++VR+ + L+GH + GLA+ ++ L S G+D + W+
Sbjct: 194 RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD 245
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Query: 804 SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNM 861
SG V +W+ + L T E E V CVA + D ++G V ++++
Sbjct: 114 SGSDDLTVKLWNWENNWALEQT---FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 862 M----NFKVMTTFMSPPPASTFLAFHPQ-DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH 916
NF + T ++ ++P D + +D TI+I++ + L+GH
Sbjct: 171 GQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 917 QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959
+++ F L I++S D L WN+ T++ K++ + L
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 91/224 (40%), Gaps = 18/224 (8%)
Query: 452 AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG--RKLFQFEGHEAPVYSVCPHQKE 509
H V +AFS N+Q IV+ DK I++W+ G + Q E H V V
Sbjct: 103 GHTKDVLSVAFSSDNRQ--IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 160
Query: 510 NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569
+ I S D +K W N + ++ + T+ S DGS S G K+G + L
Sbjct: 161 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG--KDGQAML 218
Query: 570 VEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM------- 622
W+ +EG T G +A + F R + AA IK WD++ +
Sbjct: 219 --WDLNEGKHLYTLDGGDIINA--LCFSPNRYWLCAA-TGPSIKIWDLEGKIIVDELKQE 273
Query: 623 LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLR 666
+ ST ++ P L ++ +G L D +++ G R
Sbjct: 274 VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 98/217 (45%), Gaps = 21/217 (9%)
Query: 831 NAEDVVPCVALSKNDSYVMSAGGGK-VSLFNMMNF-KVMTTFMSPPPASTFLAFHPQDNN 888
+ +DV+ VA S ++ ++S K + L+N + K S + + F P +N
Sbjct: 104 HTKDVLS-VAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 162
Query: 889 --IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNT 946
I++ G D ++++N+ ++KT GH ++ + S + ++ S G D Q + W+
Sbjct: 163 PIIVSCGW-DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
Query: 947 DTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQD 1006
+ E + L G + + F ++ L + I+D + + + Q+
Sbjct: 222 N--EGKH--LYTLDGGDII---NALCFSPNRYWLCAATGPSIKIWDLEGKIIVDE-LKQE 273
Query: 1007 VLSSP-------ISSAAYSCNSQLIYATFTDGSIGVF 1036
V+S+ +S A+S + Q ++A +TD + V+
Sbjct: 274 VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 310
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 21/137 (15%)
Query: 359 HHTLLVVGCGDGEITL---WDVGLRERLVSKPFKIWDMSNCSMMLQ-AAIVKDSSISVSR 414
H VV DG+ L WD LR +WD++ + + KD V
Sbjct: 64 HFVSDVVISSDGQFALSGSWDGTLR---------LWDLTTGTTTRRFVGHTKD----VLS 110
Query: 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQ-SLEIDAHVGGVNDLAFSYPNKQLCIVT 473
VA+S D I I L+ G +C+ +++ ++H V+ + FS + IV+
Sbjct: 111 VAFSSDNRQIVSGSRDKTIKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 167
Query: 474 CGDDKLIRVWDLSGRKL 490
CG DKL++VW+L+ KL
Sbjct: 168 CGWDKLVKVWNLANCKL 184
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
D G D T++++++ + GH K + +AFS++ +VS D + WN
Sbjct: 74 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Query: 946 T 946
T
Sbjct: 134 T 134
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 80/205 (39%), Gaps = 39/205 (19%)
Query: 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV-----KTKLKGHQKHITGLAFSTNLNIL 932
T +A PQ ++I D TI ++ + DE + L+GH ++ + S++
Sbjct: 19 TQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA 78
Query: 933 VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF--HSDQVRLLVNHETQLAI 990
+S D L W+ L G T +F H+ V + I
Sbjct: 79 LSGSWDGTLRLWD------------------LTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 991 YDGSKMECIRQW---------VPQDVLSSPISSAAYSCNSQ--LIYATFTDGSIGVFDAD 1039
GS+ + I+ W V + S +S +S NS +I + D + V++
Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180
Query: 1040 SLRLRC-RIAPSAYMS--QASPNSS 1061
+ +L+ I + Y++ SP+ S
Sbjct: 181 NCKLKTNHIGHTGYLNTVTVSPDGS 205
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Query: 804 SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNM 861
SG V +W+ + L T E E V CVA + D ++G V ++++
Sbjct: 114 SGSDDLTVKLWNWENNWALEQT---FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 862 M----NFKVMTTFMSPPPASTFLAFHPQ-DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH 916
NF + T ++ ++P D + +D TI+I++ + L+GH
Sbjct: 171 GQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 917 QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959
+++ F L I++S D L WN+ T++ K++ + L
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 36/174 (20%)
Query: 386 KPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLC 445
K K+W++SNC + + + + VS VA SPDG+ ++ L+ L
Sbjct: 541 KTVKVWNLSNCKLR---STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL- 596
Query: 446 QSLEIDAHVGGVNDLAFSYPNKQ-LCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVC 504
SLE ++ ++ L FS PN+ LC T + I++WDL + + +
Sbjct: 597 YSLEANSV---IHALCFS-PNRYWLCAAT---EHGIKIWDLESKSIVE------------ 637
Query: 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFS 558
VD K +A DN G ++CT++ +SADGS LFS
Sbjct: 638 -----------DLKVDLKAEAEKADNSGPAATKRKV-IYCTSLNWSADGSTLFS 679
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 113/289 (39%), Gaps = 37/289 (12%)
Query: 343 TMHQGSSVVSMDFHPFHHTLLVVGCG-DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQ 401
TM + +V+ P + ++V D I LW + +K K + ++ +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKL-------TKDDKAYGVAQRRLTGH 429
Query: 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDL- 460
+ V+D V S DG F + L+ DL + VG D+
Sbjct: 430 SHFVED-------VVLSSDGQFALSGSWDGELRLW------DLAAGVSTRRFVGHTKDVL 476
Query: 461 --AFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF----EGHEAPVYSVCPHQKENIHFI 514
AFS N+Q IV+ D+ I++W+ G + EGH V V I
Sbjct: 477 SVAFSLDNRQ--IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534
Query: 515 FSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574
S + D +K W N R + +T+ S DGS S G D ++ W+
Sbjct: 535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL 590
Query: 575 SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623
+EG K+ Y + F R + AA E + IK WD+++ +++
Sbjct: 591 AEG--KKLYSLEANSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIV 636
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 31/50 (62%)
Query: 896 DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
D T++++N+ ++++ L GH +++ +A S + ++ S G D ++ W+
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
D G D ++++++ + GH K + +AFS + +VS+ D + WN
Sbjct: 441 DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500
Query: 946 T 946
T
Sbjct: 501 T 501
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 880 LAFHPQDNNIIAIGMEDSTIQIYNVR-------VDEVKTKLKGHQKHITGLAFS-TNLNI 931
+A+ P ++N+IA G ED T+ ++ + + E L+GH K + +A+ T N+
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 932 LVSSGSDAQLIFWNTDT 948
L+S+G D ++ W+ T
Sbjct: 147 LLSAGCDNVILVWDVGT 163
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 566 DSHLVEWNESEGALKR-------TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618
D ++ W +G L T G K+ V T +N +L+AG DN I WD+
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162
Query: 619 NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYET 678
+ + + ++ + ++++G L+ + D+ ++++ G + A + R +E
Sbjct: 163 TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG--TVVAEKDRPHEG 220
Query: 679 SRASTEMKVPGSAVVTT 695
+R + V ++TT
Sbjct: 221 TRPVHAVFVSEGKILTT 237
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 880 LAFHPQDNNIIAIGMEDSTIQIYNVR-------VDEVKTKLKGHQKHITGLAFS-TNLNI 931
+A+ P ++N+IA G ED T+ ++ + + E L+GH K + +A+ T N+
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 932 LVSSGSDAQLIFWNTDT 948
L+S+G D ++ W+ T
Sbjct: 147 LLSAGXDNVILVWDVGT 163
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 582 TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641
T G K+ V T +N +L+AG DN I WD+ + + + ++ + ++
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 642 KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTT 695
++G L+ + D+ ++++ G + A + R +E +R + V ++TT
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKG--TVVAEKDRPHEGTRPVHAVFVSEGKILTT 237
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 91/224 (40%), Gaps = 18/224 (8%)
Query: 452 AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG--RKLFQFEGHEAPVYSVCPHQKE 509
H V +AFS N+Q IV+ DK I++W+ G + Q E H V V
Sbjct: 126 GHTKDVLSVAFSSDNRQ--IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183
Query: 510 NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569
+ I S D +K W N + ++ + T+ S DGS S G K+G + L
Sbjct: 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG--KDGQAML 241
Query: 570 VEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM------- 622
W+ +EG T G +A + F R + AA IK WD++ +
Sbjct: 242 --WDLNEGKHLYTLDGGDIINA--LCFSPNRYWLCAA-TGPSIKIWDLEGKIIVDELKQE 296
Query: 623 LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLR 666
+ ST ++ P L ++ +G L D +++ G R
Sbjct: 297 VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340
Score = 36.6 bits (83), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 95/212 (44%), Gaps = 20/212 (9%)
Query: 836 VPCVALSKNDSYVMSAGGGK-VSLFNMMNF-KVMTTFMSPPPASTFLAFHPQDNN--IIA 891
V VA S ++ ++S K + L+N + K S + + F P +N I++
Sbjct: 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190
Query: 892 IGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEK 951
G D ++++N+ ++KT GH ++ + S + ++ S G D Q + W+ + E
Sbjct: 191 CGW-DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN--EG 247
Query: 952 RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSP 1011
+ L G + + F ++ L + I+D + + I + Q+V+S+
Sbjct: 248 KH--LYTLDGGDII---NALCFSPNRYWLCAATGPSIKIWD-LEGKIIVDELKQEVISTS 301
Query: 1012 -------ISSAAYSCNSQLIYATFTDGSIGVF 1036
+S A+S + Q ++A +TD + V+
Sbjct: 302 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 21/137 (15%)
Query: 359 HHTLLVVGCGDGEITL---WDVGLRERLVSKPFKIWDMSNCSMMLQ-AAIVKDSSISVSR 414
H VV DG+ L WD LR +WD++ + + KD V
Sbjct: 87 HFVSDVVISSDGQFALSGSWDGTLR---------LWDLTTGTTTRRFVGHTKD----VLS 133
Query: 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQ-SLEIDAHVGGVNDLAFSYPNKQLCIVT 473
VA+S D I I L+ G +C+ +++ ++H V+ + FS + IV+
Sbjct: 134 VAFSSDNRQIVSGSRDKTIKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190
Query: 474 CGDDKLIRVWDLSGRKL 490
CG DKL++VW+L+ KL
Sbjct: 191 CGWDKLVKVWNLANCKL 207
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
D G D T++++++ + GH K + +AFS++ +VS D + WN
Sbjct: 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Query: 946 T 946
T
Sbjct: 157 T 157
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 412 VSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCI 471
+S AW+ D I + H +H+Y G N Q E+ H G V + ++ + + I
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGIDWAPDSNR--I 67
Query: 472 VTCGDDKLIRVWDLSGR 488
VTCG D+ VW L GR
Sbjct: 68 VTCGTDRNAYVWTLKGR 84
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 32/187 (17%)
Query: 885 QDNNIIAIGMEDSTIQIYN------VRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD 938
+D IAI + + IY V+V E LK H +TG+ ++ + N +V+ G+D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGIDWAPDSNRIVTCGTD 73
Query: 939 AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMEC 998
W + ++ I R+ + VR N E + A+ GS++
Sbjct: 74 RNAYVWTLKGRTWKPTLVI-----------LRINRAARCVRWAPN-EKKFAVGSGSRVIS 121
Query: 999 I------RQWVPQDVLSSPISSAAYSC----NSQLIYATFTDGSIGVFDADSLRLRCRIA 1048
I W + PI S S NS L+ A D +F A + R A
Sbjct: 122 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 181
Query: 1049 PSAYMSQ 1055
P+ + S+
Sbjct: 182 PTPWGSK 188
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 412 VSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCI 471
+S AW+ D I + H +H+Y G N Q E+ H G V + ++ + + I
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDSNR--I 67
Query: 472 VTCGDDKLIRVWDLSGR 488
VTCG D+ VW L GR
Sbjct: 68 VTCGTDRNAYVWTLKGR 84
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 32/187 (17%)
Query: 885 QDNNIIAIGMEDSTIQIYN------VRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD 938
+D IAI + + IY V+V E LK H +TG+ ++ + N +V+ G+D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGVDWAPDSNRIVTCGTD 73
Query: 939 AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMEC 998
W + ++ I R+ + VR N E + A+ GS++
Sbjct: 74 RNAYVWTLKGRTWKPTLVI-----------LRINRAARCVRWAPN-EKKFAVGSGSRVIS 121
Query: 999 I------RQWVPQDVLSSPISSAAYSC----NSQLIYATFTDGSIGVFDADSLRLRCRIA 1048
I W + PI S S NS L+ A D +F A + R A
Sbjct: 122 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 181
Query: 1049 PSAYMSQ 1055
P+ + S+
Sbjct: 182 PTPWGSK 188
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 65/295 (22%), Positives = 118/295 (40%), Gaps = 41/295 (13%)
Query: 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQA 402
T H+ ++ S+ + P H +LL G D +++W +E + F+ M
Sbjct: 55 TAHK-KAIRSVAWRP-HTSLLAAGSFDSTVSIW---AKEESADRTFE---------MDLL 100
Query: 403 AIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI-DAHVGGVNDLA 461
AI++ V VAWS DG ++ + ++ S + + + + H V +
Sbjct: 101 AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160
Query: 462 FSYPNKQLCIVTCGDDKLIRVW---DLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA 518
+ +P++ L + DD +R+W D + GHE V+S + E + + S +
Sbjct: 161 W-HPSEALLASSSYDDT-VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS 218
Query: 519 VDGKIKAWLYDNVGSRVDYDAPGLW-CTTMLYSADGSRLFSCG-------TSKEGDSHLV 570
D ++ W Y +G D D W C +L ++++ S D L
Sbjct: 219 DDSTVRVWKY--MGD--DEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLA 274
Query: 571 EWNESEGALKRTYIGFRKKSAGVVQFDTTR------NRILAAGEDNQI-KFWDMD 618
+ E +G K R GV + + + ILA G D+ I FW ++
Sbjct: 275 VYEEVDGEWK--VFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327
Score = 37.0 bits (84), Expect = 0.070, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 22/135 (16%)
Query: 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT-------KLKGHQKHITGLAFSTNLNIL 932
+A+ P +++A G DST+ I+ +T ++GH+ + G+A+S + L
Sbjct: 64 VAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL 122
Query: 933 VSSGSDAQLIFWNTD-TWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIY 991
+ D + W TD + E+ + I++ +Q HS V+ ++ H ++ +
Sbjct: 123 ATCSRDKSVWIWETDESGEEYECISV-------------LQEHSQDVKHVIWHPSEALLA 169
Query: 992 DGSKMECIRQWVPQD 1006
S + +R W D
Sbjct: 170 SSSYDDTVRIWKDYD 184
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 36/180 (20%)
Query: 363 LVVGCGDGEITLWDVGLRERL---VSKPFKIWDMSNCSMMLQA----------------- 402
L VG E+ LWDV ++RL S ++ +S S +L +
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 232
Query: 403 --AIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLY-TYQGSNDLCQSLEIDAHVGGVND 459
A + S V + W+PDG + +L++++ + G H G V
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 460 LAFSYPNKQLCIVTCG--DDKLIRVWDL-SGRKLFQFEGHEAPVYSVC-----PHQKENI 511
+A+ P + + T G D+ IR+W++ SG L + H VC PH KE I
Sbjct: 293 VAWC-PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS----QVCSILWSPHYKELI 347
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV-MSAGGGKVSLFNMMNFKVMTTFMSPP 874
W S+G ++ E + + VA K +Y+ + +V L+++ K + S
Sbjct: 141 WSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS 200
Query: 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFSTNLNILV 933
L++ ++ I++ G I ++VRV E L GH + + GL ++ + L
Sbjct: 201 ARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA 257
Query: 934 SSGSDAQLIFW 944
S G+D + W
Sbjct: 258 SGGNDNLVNVW 268
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 411 SVSRVAWSPD---GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK 467
S+ +++SP GNF+ + + + Q S + H G V D+ +S
Sbjct: 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-QMHTGPVLDVCWSDDGS 99
Query: 468 QLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
++ +C DK ++WDLS + Q H+APV ++ + N + + + D +K W
Sbjct: 100 KVFTASC--DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERL 383
+V + FHP H TL VG DG + WD R +L
Sbjct: 275 AVNGIAFHPVHGTLATVG-SDGRFSFWDKDARTKL 308
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 30/177 (16%)
Query: 363 LVVGCGDGEITLWDVGLRERL---VSKPFKIWDMSNCSMMLQA----------------- 402
L VG E+ LWDV ++RL S ++ +S S +L +
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 221
Query: 403 --AIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLY-TYQGSNDLCQSLEIDAHVGGVND 459
A + S V + W+PDG + +L++++ + G H G V
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 460 LAFSYPNKQLCIVTCG--DDKLIRVWDL-SGRKLFQFEGHEAPVYSV--CPHQKENI 511
+A+ P + + T G D+ IR+W++ SG L + H + V S+ PH KE I
Sbjct: 282 VAWC-PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELI 336
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV-MSAGGGKVSLFNMMNFKVMTTFMSPP 874
W S+G ++ E + + VA K +Y+ + +V L+++ K + S
Sbjct: 130 WSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS 189
Query: 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFSTNLNILV 933
L++ ++ I++ G I ++VRV E L GH + + GL ++ + L
Sbjct: 190 ARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA 246
Query: 934 SSGSDAQLIFW 944
S G+D + W
Sbjct: 247 SGGNDNLVNVW 257
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG--RKLFQ-FEGHEAPVYSVCPHQ 507
+AH ++D Y K+L TC DK I+++++ G KL GHE PV+ V
Sbjct: 8 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 508 KENIHFIFSTAVDGKIKAWLYDN 530
+ + S + DGK+ W +N
Sbjct: 66 PKFGTILASCSYDGKVLIWKEEN 88
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 19/142 (13%)
Query: 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTF--------------MSPPPASTF- 879
VV CV S + Y+ + ++ + + ++ S P+S
Sbjct: 66 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125
Query: 880 ---LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG 936
+ F P D +A G ED I+I+++ ++ L+GH++ I L + + + LVS
Sbjct: 126 IRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 937 SDAQLIFWNTDTWEKRKSIAIQ 958
D + W+ T + +++I+
Sbjct: 185 GDRTVRIWDLRTGQCSLTLSIE 206
Score = 37.0 bits (84), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 471 IVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSV 503
+ T +D+LIR+WD+ RK+ +GHE +YS+
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 171
Score = 36.2 bits (82), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 26/233 (11%)
Query: 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK 467
S + + V +SPDG F+ LI ++ + + + + H + L + +P+
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV---MILQGHEQDIYSLDY-FPSG 177
Query: 468 QLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWL 527
+ G D+ +R+WDL + E V +V + +I + ++D ++ W
Sbjct: 178 DKLVSGSG-DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWD 235
Query: 528 YDN--VGSRVDYD-APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN----------- 573
+ + R+D + G +YS +R S D + WN
Sbjct: 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 295
Query: 574 -ESEGALKRTYIGFRKKSAGVVQFDTTRN--RILAAGEDNQIKFWDMDNVNML 623
+ G + TYIG + V+ TT+N IL+ +D + FWD + N L
Sbjct: 296 TPNSGTCEVTYIGHKDF---VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
Query: 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAI 892
+D+ D V +G V ++++ + T +S T +A P D IA
Sbjct: 166 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAA 224
Query: 893 GMEDSTIQIYNV-------RVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
G D +++++ R+D GH+ + + F+ + +VS D + WN
Sbjct: 225 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 42/213 (19%)
Query: 331 WSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKI 390
W +++ + H+ + S+D+ P L V G GD + +WD LR
Sbjct: 150 WDIENRKIVMILQGHE-QDIYSLDYFPSGDKL-VSGSGDRTVRIWD--LR---------- 195
Query: 391 WDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLE 449
CS+ L ++D V+ VA SP DG +I + ++ + + L + L+
Sbjct: 196 --TGQCSLTLS---IED---GVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLD 246
Query: 450 IDAHVG-GVNDLAFS--YPNKQLCIVTCGDDKLIRVWDL-------------SGRKLFQF 493
+ G G D +S + +V+ D+ +++W+L SG +
Sbjct: 247 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 306
Query: 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
GH+ V SV Q N +I S + D + W
Sbjct: 307 IGHKDFVLSVATTQ--NDEYILSGSKDRGVLFW 337
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG--RKLFQ-FEGHEAPVYSVCPHQ 507
+AH ++D Y K+L TC DK I+++++ G KL GHE PV+ V
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KENIHFIFSTAVDGKIKAWLYDN 530
+ + S + DGK+ W +N
Sbjct: 64 PKFGTILASCSYDGKVLIWKEEN 86
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG--RKLFQ-FEGHEAPVYSVCPHQ 507
+AH ++D Y K++ TC DK I+++++ G KL GHE PV+ V
Sbjct: 6 NAHNEMIHDAVMDYYGKRMA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KENIHFIFSTAVDGKIKAWLYDN 530
+ + S + DGK+ W +N
Sbjct: 64 PKFGTILASCSYDGKVMIWKEEN 86
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG--RKLFQ-FEGHEAPVYSVCPHQ 507
+AH ++D Y K+L TC DK I+++++ G KL GHE PV+ V
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KENIHFIFSTAVDGKIKAWLYDN 530
+ + S + DGK+ W +N
Sbjct: 64 PKFGTILASCSYDGKVLIWKEEN 86
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 12/162 (7%)
Query: 885 QDNNIIAIGMEDSTIQIYNVRVD--EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLI 942
+++ + G D ++++ R + +++ L+GHQ + + S L I SS DA +
Sbjct: 46 ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105
Query: 943 FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQ 1001
W+ + ++ KSI AG PV + F D L H ++ I+ +E ++
Sbjct: 106 LWDLENGKQIKSI----DAG--PVDAWTLAFSPDSQYLATGTHVGKVNIF---GVESGKK 156
Query: 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL 1043
D I S AYS + + + + DG I +FD + +L
Sbjct: 157 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL 198
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894
+ +A S + Y+ S G +++F++ K++ T L F P D+ ++
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTAS 225
Query: 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAF 925
+D I+IY+V+ + L GH + +AF
Sbjct: 226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 16/182 (8%)
Query: 789 GVQKLWKWNRTEQNP-----SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV-ALS 842
GVQ + W+ E +P G + H Q LL + + E+ C
Sbjct: 23 GVQ--FNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD 80
Query: 843 KNDSYVMSAGGGK---VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
N S+ + A G + + N + + + ++ A L FHP+D N++ +D +
Sbjct: 81 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 140
Query: 900 QIYNVRVD---EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956
+++N++ D + ++GH+ + + ++S G D L W ++ KR A
Sbjct: 141 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS--KRMMNA 198
Query: 957 IQ 958
I+
Sbjct: 199 IK 200
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 16/182 (8%)
Query: 789 GVQKLWKWNRTEQNP-----SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV-ALS 842
GVQ + W+ E +P G + H Q LL + + E+ C
Sbjct: 22 GVQ--FNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD 79
Query: 843 KNDSYVMSAGGGK---VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
N S+ + A G + + N + + + ++ A L FHP+D N++ +D +
Sbjct: 80 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 139
Query: 900 QIYNVRVD---EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956
+++N++ D + ++GH+ + + ++S G D L W ++ KR A
Sbjct: 140 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS--KRMMNA 197
Query: 957 IQ 958
I+
Sbjct: 198 IK 199
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 16/182 (8%)
Query: 789 GVQKLWKWNRTEQNP-----SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV-ALS 842
GVQ + W+ E +P G + H Q LL + + E+ C
Sbjct: 22 GVQ--FNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD 79
Query: 843 KNDSYVMSAGGGKVSLFNMMN---FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
N S+ + A G + ++N + + ++ A L FHP+D N++ +D +
Sbjct: 80 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 139
Query: 900 QIYNVRVD---EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956
+++N++ D + ++GH+ + + ++S G D L W ++ KR A
Sbjct: 140 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS--KRMMNA 197
Query: 957 IQ 958
I+
Sbjct: 198 IK 199
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 16/182 (8%)
Query: 789 GVQKLWKWNRTEQNP-----SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV-ALS 842
GVQ + W+ E +P G + H Q LL + + E+ C
Sbjct: 18 GVQ--FNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD 75
Query: 843 KNDSYVMSAGGGK---VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
N S+ + A G + + N + + + ++ A L FHP+D N++ +D +
Sbjct: 76 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 135
Query: 900 QIYNVRVD---EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956
+++N++ D + ++GH+ + + ++S G D L W ++ KR A
Sbjct: 136 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS--KRMMNA 193
Query: 957 IQ 958
I+
Sbjct: 194 IK 195
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 887 NNIIAIGMEDSTIQIYNVRVDEVKTKLKG---HQKHITGLAFSTNLNILVSSGSDAQLIF 943
+NI+ G DST++I++++ + L+G HQ +T L F N N +++S D +
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKL 386
Query: 944 WNTDTWE 950
W+ T E
Sbjct: 387 WDLKTGE 393
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 24/118 (20%)
Query: 887 NNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL--NILVSSGSDAQLIFW 944
N I G +D+T+++++ + L GH TG +S+ + NI++S +D L W
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGH----TGGVWSSQMRDNIIISGSTDRTLKVW 184
Query: 945 NTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQW 1002
N +T E I G H+ VR + HE + + GS+ +R W
Sbjct: 185 NAETGE-----CIHTLYG-----------HTSTVRCMHLHEKR--VVSGSRDATLRVW 224
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 887 NNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNT 946
+NII G D T++++N E L GH + + +VS DA L W+
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI 226
Query: 947 DT 948
+T
Sbjct: 227 ET 228
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 16/182 (8%)
Query: 789 GVQKLWKWNRTEQNP-----SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV-ALS 842
GVQ + W+ E +P G + H Q LL + + E+ C
Sbjct: 59 GVQ--FNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD 116
Query: 843 KNDSYVMSAGGGK---VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
N S+ + A G + + N + + + ++ A L FHP+D N++ +D +
Sbjct: 117 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 176
Query: 900 QIYNVRVD---EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956
+++N++ D + ++GH+ + + ++S G D L W ++ KR A
Sbjct: 177 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS--KRMMNA 234
Query: 957 IQ 958
I+
Sbjct: 235 IK 236
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 912 KLKGHQKHITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSI--AIQLPAGKLPVGE 968
+L+GHQK GL+++ NLN L+S+ D + W+ + K + A + G V E
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235
Query: 969 TRVQFHSDQVRLL--VNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYA 1026
V +H L V + +L I+D + D ++ ++ +++ S+ I A
Sbjct: 236 D-VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 294
Query: 1027 TFT-DGSIGVFDADSLRLR 1044
T + D ++ ++D +L+L+
Sbjct: 295 TGSADKTVALWDLRNLKLK 313
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFS-TNLNILVSSGS 937
L+F+P I+A G D T+ ++++R ++K + H+ I + +S N IL SSG+
Sbjct: 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 342
Query: 938 DAQLIFWN 945
D +L W+
Sbjct: 343 DRRLHVWD 350
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 17/184 (9%)
Query: 465 PNKQLCIVTCGDDKLIRVWDLSGRKLFQ--------FEGHEAPVYSVCPHQKENIHFIFS 516
PN +++ DD I +WD++ F GH A V V H F S
Sbjct: 191 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 249
Query: 517 TAVDGKIKAW-LYDNVGSRVDY--DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573
A D K+ W +N S+ + DA + ++ + + G++ D + W+
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA---DKTVALWD 306
Query: 574 ESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDNVNMLTSTE-AEGG 631
LK K VQ+ ILA+ G D ++ WD+ + STE AE G
Sbjct: 307 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 366
Query: 632 LPSL 635
P L
Sbjct: 367 PPEL 370
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 32/165 (19%)
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
+ V + F+P+ +L G D + L WD+ N + L + +
Sbjct: 278 AEVNCLSFNPYSEFILATGSADKTVAL----------------WDLRNLKLKLHS--FES 319
Query: 408 SSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQ--GSNDLCQSLE---------IDAHVG 455
+ +V WSP I + T +H++ G + E H
Sbjct: 320 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379
Query: 456 GVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPV 500
++D +++ PN+ I + +D +++VW ++ ++ E E P
Sbjct: 380 KISDFSWN-PNEPWIICSVSEDNIMQVWQMA-ENVYNDEEPEIPA 422
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 912 KLKGHQKHITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSI--AIQLPAGKLPVGE 968
+L+GHQK GL+++ NLN L+S+ D + W+ + K + A + G V E
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 237
Query: 969 TRVQFHSDQVRLL--VNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYA 1026
V +H L V + +L I+D + D ++ ++ +++ S+ I A
Sbjct: 238 D-VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 296
Query: 1027 TFT-DGSIGVFDADSLRLR 1044
T + D ++ ++D +L+L+
Sbjct: 297 TGSADKTVALWDLRNLKLK 315
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFS-TNLNILVSSGS 937
L+F+P I+A G D T+ ++++R ++K + H+ I + +S N IL SSG+
Sbjct: 285 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 344
Query: 938 DAQLIFWN 945
D +L W+
Sbjct: 345 DRRLHVWD 352
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 17/184 (9%)
Query: 465 PNKQLCIVTCGDDKLIRVWDLSGRKLFQ--------FEGHEAPVYSVCPHQKENIHFIFS 516
PN +++ DD I +WD++ F GH A V V H F S
Sbjct: 193 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 251
Query: 517 TAVDGKIKAW-LYDNVGSRVDY--DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573
A D K+ W +N S+ + DA + ++ + + G++ D + W+
Sbjct: 252 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA---DKTVALWD 308
Query: 574 ESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDNVNMLTSTE-AEGG 631
LK K VQ+ ILA+ G D ++ WD+ + STE AE G
Sbjct: 309 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 368
Query: 632 LPSL 635
P L
Sbjct: 369 PPEL 372
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 32/165 (19%)
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
+ V + F+P+ +L G D + L WD+ N + L + +
Sbjct: 280 AEVNCLSFNPYSEFILATGSADKTVAL----------------WDLRNLKLKLHS--FES 321
Query: 408 SSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQ--GSNDLCQSLE---------IDAHVG 455
+ +V WSP I + T +H++ G + E H
Sbjct: 322 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 381
Query: 456 GVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPV 500
++D +++ PN+ I + +D +++VW ++ ++ E E P
Sbjct: 382 KISDFSWN-PNEPWIICSVSEDNIMQVWQMA-ENVYNDEEPEIPA 424
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 912 KLKGHQKHITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSI--AIQLPAGKLPVGE 968
+L+GHQK GL+++ NLN L+S+ D + W+ + K + A + G V E
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239
Query: 969 TRVQFHSDQVRLL--VNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYA 1026
V +H L V + +L I+D + D ++ ++ +++ S+ I A
Sbjct: 240 D-VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 298
Query: 1027 TFT-DGSIGVFDADSLRLR 1044
T + D ++ ++D +L+L+
Sbjct: 299 TGSADKTVALWDLRNLKLK 317
Score = 36.6 bits (83), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFS-TNLNILVSSGS 937
L+F+P I+A G D T+ ++++R ++K + H+ I + +S N IL SSG+
Sbjct: 287 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 346
Query: 938 DAQLIFWN 945
D +L W+
Sbjct: 347 DRRLHVWD 354
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 17/184 (9%)
Query: 465 PNKQLCIVTCGDDKLIRVWDLSGRKLFQ--------FEGHEAPVYSVCPHQKENIHFIFS 516
PN +++ DD I +WD++ F GH A V V H F S
Sbjct: 195 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 253
Query: 517 TAVDGKIKAW-LYDNVGSRVDY--DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573
A D K+ W +N S+ + DA + ++ + + G++ D + W+
Sbjct: 254 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA---DKTVALWD 310
Query: 574 ESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDNVNMLTSTE-AEGG 631
LK K VQ+ ILA+ G D ++ WD+ + STE AE G
Sbjct: 311 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 370
Query: 632 LPSL 635
P L
Sbjct: 371 PPEL 374
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 31/151 (20%)
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
+ V + F+P+ +L G D + L WD+ N + L + +
Sbjct: 282 AEVNCLSFNPYSEFILATGSADKTVAL----------------WDLRNLKLKLHS--FES 323
Query: 408 SSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQ--GSNDLCQSLE---------IDAHVG 455
+ +V WSP I + T +H++ G + E H
Sbjct: 324 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 383
Query: 456 GVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486
++D +++ PN+ I + +D +++VW ++
Sbjct: 384 KISDFSWN-PNEPWIICSVSEDNIMQVWQMA 413
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 836 VPCVALS--KNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPA--STFLAFHPQDNNIIA 891
V CVA S K+ ++ + ++ L++ K + P T LA+HPQ + +
Sbjct: 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231
Query: 892 IGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN-LNILVSSGSDAQLIFWNTDTWE 950
G E+ T+ + + + H + +TGL FS + + L S D L ++ E
Sbjct: 232 FGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE 291
Query: 951 KRKSIA 956
+S A
Sbjct: 292 LFRSQA 297
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 836 VPCVALS-KNDSYVMSAG-GGKVSLFNMMNFKVMT--TFMSPPPASTFLAFHPQDNNIIA 891
V CVA D+ +S G G++ L++ K T F + T + +HP+ ++ A
Sbjct: 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA 243
Query: 892 IGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD 938
G E + + N++ + H ++ITGLA+S + + ++S S+
Sbjct: 244 CGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISE 290
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 472 VTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSV--CPHQKENIHFIFSTAVDGKIKAW-- 526
V+ G D ++VWDLS + + + + H + V V CP K+ I S DG+I W
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP-GKDTI--FLSCGEDGRILLWDT 211
Query: 527 LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560
+R+D+ A T++ + + F+CG
Sbjct: 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 386 KPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLC 445
+ +IW S + ++ + + +V +VAWSP GN++ A ++ + +D
Sbjct: 38 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK-KNQDDFE 96
Query: 446 QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ----FEGHEAPVY 501
++ H V +A++ P+ L + TC DK + VW++ ++ H V
Sbjct: 97 CVTTLEGHENEVKSVAWA-PSGNL-LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 502 SVCPHQKENIHFIFSTAVDGKIK 524
V H + + + S + D +K
Sbjct: 155 HVVWHPSQEL--LASASYDDTVK 175
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 887 NNIIAIGMEDSTIQIYNVRVD--EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFW 944
N +A D+T I+ D E T L+GH+ + +A++ + N+L + D + W
Sbjct: 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Query: 945 NTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQ 987
D ++ + +++ + H+ V+ +V H +Q
Sbjct: 133 EVDEEDEYECVSV-------------LNSHTQDVKHVVWHPSQ 162
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 873 PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL---KGHQKHITGLAFSTNL 929
P FLA++P + + G D I+I+ D K +GHQ+ + +A+S
Sbjct: 15 PDSRCWFLAWNPAGTLLASCGG-DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG 73
Query: 930 NILVSSGSDAQLIFW 944
N L S+ DA W
Sbjct: 74 NYLASASFDATTCIW 88
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 864 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE--VKTKLKGHQKHIT 921
++ ++ S + +HP ++A D T+++Y D+ L+GH+ +
Sbjct: 140 YECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198
Query: 922 GLAFSTNLNILVSSGSDAQLIFW 944
LAF + L S D + W
Sbjct: 199 SLAFDPSGQRLASCSDDRTVRIW 221
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS 937
T + FHP +++ ED+TI++++ + + LKGH + ++F + +L S +
Sbjct: 112 TRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 170
Query: 938 DAQLIFWNTDTWE 950
D + W+ +E
Sbjct: 171 DMTIKLWDFQGFE 183
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 471 IVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
I++C DDK +RVWD ++ + HE V S+ H+ ++ + +VD +K W
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK--TAPYVVTGSVDQTVKVW 407
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 603 ILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662
+++A ED IK WD + + + +G S+ + F+ G LL +AD IK L +
Sbjct: 123 MVSASEDATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSADMTIK-LWDF 179
Query: 663 DGLRALRAIETRAYETSRAS 682
G +R + + S S
Sbjct: 180 QGFECIRTMHGHDHNVSSVS 199
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGET 969
K L GH+ +T + F +++VS+ DA + W+ +T + +++ + +
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ------ 154
Query: 970 RVQF-HSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028
+ F HS ++ + + + ++D ECIR D +SS + N I +
Sbjct: 155 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD---HNVSSVSIMPNGDHIVSAS 211
Query: 1029 TDGSIGVFDADS 1040
D +I +++ +
Sbjct: 212 RDKTIKMWEVQT 223
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
G D TI++++V L GH + G+ F + ++S D L W+
Sbjct: 314 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 467 KQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPV--YSVCPHQK--ENIHFIFSTAVDGK 522
K I++ DK I+VW + G+ L GH V V P++K ++ I S D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573
+KAW + D+ T+ S DG+ + S G D ++ WN
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWN 224
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948
II+ G D ++ +N+ +++ GH +I L S + ++ S+G D +++ WN
Sbjct: 169 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 949 WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL 1008
+ +++ Q L F ++ L T + ++ + P+
Sbjct: 228 KKAMYTLSAQDEVFSLA-------FSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG 280
Query: 1009 SSPIS-----SAAYSCNSQLIYATFTDGSIGVF 1036
S + S A+S + Q ++A +TD I V+
Sbjct: 281 YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 467 KQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPV--YSVCPHQK--ENIHFIFSTAVDGK 522
K I++ DK I+VW + G+ L GH V V P++K ++ I S D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573
+KAW + D+ T+ S DG+ + S G D ++ WN
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWN 224
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948
II+ G D ++ +N+ +++ GH +I L S + ++ S+G D +++ WN
Sbjct: 169 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 949 WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL 1008
+ +++ Q L F ++ L T + ++ + P+
Sbjct: 228 KKAMYTLSAQDEVFSLA-------FSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG 280
Query: 1009 SSPIS-----SAAYSCNSQLIYATFTDGSIGVF 1036
S + S A+S + Q ++A +TD I V+
Sbjct: 281 YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 882 FHPQDNNIIAIGMEDSTIQIYNVRVDEVK----------TKLKGHQKHITGLAFSTNLN- 930
+ PQ+ +IIA S + +++ K +L+GHQK GL++++NL+
Sbjct: 134 YXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 193
Query: 931 ILVSSGSDAQLIFWNTDTWEKRKSI--AIQLPAGKLPVGETRVQFHSDQVRLL--VNHET 986
L+S+ D + W+ + K I A + G V E V +H L V +
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED-VAWHLLHESLFGSVADDQ 252
Query: 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT-DGSIGVFDADSLRLR 1044
+L I+D + D ++ ++ +++ S+ I AT + D ++ ++D +L+L+
Sbjct: 253 KLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFS-TNLNILVSSGS 937
L+F+P I+A G D T+ ++++R ++K + H+ I + +S N IL SSG+
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 938 DAQLIFWN 945
D +L W+
Sbjct: 341 DRRLNVWD 348
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG--RKLFQ-FEGHEAPVYSVCPHQ 507
+AH ++D Y K+ TC DK I+++++ G KL GHE PV+ V
Sbjct: 6 NAHNEXIHDAVXDYYGKRXA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KENIHFIFSTAVDGKIKAWLYDN 530
+ + S + DGK+ W +N
Sbjct: 64 PKFGTILASCSYDGKVXIWKEEN 86
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 467 KQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPV--YSVCPHQK--ENIHFIFSTAVDGK 522
K I++ DK I+VW + G+ L GH V V P++K ++ I S D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573
+KAW + D+ T+ S DG+ + S G D ++ WN
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWN 224
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948
II+ G D ++ +N+ +++ GH +I L S + ++ S+G D +++ WN
Sbjct: 169 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 949 WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL 1008
+ +++ Q L F ++ L T + ++ + P+
Sbjct: 228 KKAMYTLSAQDEVFSLA-------FSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG 280
Query: 1009 SSPIS-----SAAYSCNSQLIYATFTDGSIGVF 1036
S + S A+S + Q ++A +TD I V+
Sbjct: 281 YSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 17/202 (8%)
Query: 467 KQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPV--YSVCPHQK--ENIHFIFSTAVDGK 522
K I++ DK I+VW + G+ L GH V V P++K ++ I S D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582
+KAW + D+ T+ S DG+ + S G D ++ WN + A K
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLA--AKKAM 231
Query: 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE------GGLPSLP 636
Y + + F R LAA IK + +D ++ E P
Sbjct: 232 YTLSAQDEVFSLAFSPNR-YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV 290
Query: 637 RLRFNKEGNLLVVTTADQGIKI 658
L ++ +G L D I++
Sbjct: 291 SLAWSADGQTLFAGYTDNVIRV 312
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948
II+ G D ++ +N+ +++ GH +I L S + ++ S+G D +++ WN
Sbjct: 169 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 949 WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL 1008
+ +++ Q L F ++ L T + ++ + P+
Sbjct: 228 KKAMYTLSAQDEVFSLA-------FSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG 280
Query: 1009 SSPIS-----SAAYSCNSQLIYATFTDGSIGVF 1036
S + S A+S + Q ++A +TD I V+
Sbjct: 281 YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 36/180 (20%)
Query: 363 LVVGCGDGEITLWDVGLRERL---VSKPFKIWDMSNCSMML------------------- 400
L VG E+ LWDV ++RL S ++ +S S +L
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 141
Query: 401 QAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLY-TYQGSNDLCQSLEIDAHVGGVND 459
A + S V + W+PDG + +L++++ + G H G V
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201
Query: 460 LAFSYPNKQLCIVTCG--DDKLIRVWDL-SGRKLFQFEGHEAPVYSVC-----PHQKENI 511
+A+ P + + T G D+ IR+W++ SG L + H VC PH KE I
Sbjct: 202 VAWC-PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS----QVCSILWSPHYKELI 256
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV-MSAGGGKVSLFNMMNFKVMTTFMSPP 874
W S+G ++ E + + VA K +Y+ + +V L+++ K + S
Sbjct: 50 WSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS 109
Query: 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFSTNLNILV 933
L++ ++ I++ G I ++VRV E L GH + + GL ++ + L
Sbjct: 110 ARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA 166
Query: 934 SSGSDAQLIFW 944
S G+D + W
Sbjct: 167 SGGNDNLVNVW 177
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 467 KQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPV--YSVCPHQK--ENIHFIFSTAVDGK 522
K I++ DK I+VW + G+ L GH V V P++K ++ I S D
Sbjct: 112 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 171
Query: 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573
+KAW + D+ T+ S DG+ + S G D ++ WN
Sbjct: 172 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWN 218
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948
II+ G D ++ +N+ +++ GH +I L S + ++ S+G D +++ WN
Sbjct: 163 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 221
Query: 949 WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL 1008
+ +++ Q L F ++ L T + ++ + P+
Sbjct: 222 KKAMYTLSAQDEVFSLA-------FSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG 274
Query: 1009 SSPIS-----SAAYSCNSQLIYATFTDGSIGVF 1036
S + S A+S + Q ++A +TD I V+
Sbjct: 275 YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 80/202 (39%), Gaps = 17/202 (8%)
Query: 467 KQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPV--YSVCPHQK--ENIHFIFSTAVDGK 522
K I++ DK I+VW + G+ L GH V V P++K ++ I S D
Sbjct: 118 KASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKX 177
Query: 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582
+KAW + D+ T+ S DG+ + S G K+G+ L WN + A K
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEIXL--WNLA--AKKAX 231
Query: 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE------GGLPSLP 636
Y + + F R LAA IK + +D ++ E P
Sbjct: 232 YTLSAQDEVFSLAFSPNR-YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV 290
Query: 637 RLRFNKEGNLLVVTTADQGIKI 658
L ++ +G L D I++
Sbjct: 291 SLAWSADGQTLFAGYTDNVIRV 312
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 13/153 (8%)
Query: 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948
II+ G D ++ +N+ +++ GH +I L S + ++ S+G D ++ WN
Sbjct: 169 IISAG-NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAA 227
Query: 949 WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL 1008
+ +++ Q L F ++ L T + ++ + P+
Sbjct: 228 KKAXYTLSAQDEVFSLA-------FSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG 280
Query: 1009 SSPIS-----SAAYSCNSQLIYATFTDGSIGVF 1036
S + S A+S + Q ++A +TD I V+
Sbjct: 281 YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 882 FHPQDNNIIAIGMEDSTIQIYNVRVDEVK----------TKLKGHQKHITGLAFSTNLN- 930
+ PQ+ +IIA S + +++ K +L+GHQK GL++++NL+
Sbjct: 134 YMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 193
Query: 931 ILVSSGSDAQLIFWNTDTWEKRKSI--AIQLPAGKLPVGETRVQFHSDQVRLL--VNHET 986
L+S+ D + W+ + K I A + G V E V +H L V +
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED-VAWHLLHESLFGSVADDQ 252
Query: 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT-DGSIGVFDADSLRLR 1044
+L I+D + D ++ ++ +++ S+ I AT + D ++ ++D +L+L+
Sbjct: 253 KLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFS-TNLNILVSSGS 937
L+F+P I+A G D T+ ++++R ++K + H+ I + +S N IL SSG+
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 938 DAQLIFWN 945
D +L W+
Sbjct: 341 DRRLNVWD 348
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 74/206 (35%), Gaps = 47/206 (22%)
Query: 450 IDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQK 508
+ H G V L Y + I+T D +RVWD+ +G L H V H +
Sbjct: 169 LTGHTGSV--LCLQYDER--VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL----HLR 220
Query: 509 ENIHFIFSTAVDGKIKAWLYDN----------VGSR-----VDYDAPGLWCTTMLYSADG 553
N + + + D I W + VG R VD+D +
Sbjct: 221 FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYI----------- 269
Query: 554 SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQI 612
S GD + WN S RT G K+ +Q+ R+R++ +G DN I
Sbjct: 270 -------VSASGDRTIKVWNTSTCEFVRTLNG-HKRGIACLQY---RDRLVVSGSSDNTI 318
Query: 613 KFWDMDNVNMLTSTEAEGGLPSLPRL 638
+ WD++ L E L R
Sbjct: 319 RLWDIECGACLRVLEGHEELVRCIRF 344
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 844 NDSYVMSAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIY 902
+D Y++SA G + + ++N + + T L + + ++ G D+TI+++
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLW 321
Query: 903 NVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAG 962
++ L+GH++ + + F +VS D ++ W+ ++ + PAG
Sbjct: 322 DIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKI-----KVWDLVAALDPRAPAG 374
Query: 963 KLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSA 1015
L + T V+ HS +V L E Q I S + I W D L+ P + A
Sbjct: 375 TLCL-RTLVE-HSGRVFRLQFDEFQ--IVSSSHDDTILIW---DFLNDPAAQA 420
Score = 36.6 bits (83), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 25/155 (16%)
Query: 471 IVTCGDDKLIRVWDLSG------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIK 524
+VTC D+ I VWD++ R++ GH A V V K +I S + D IK
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLV--GHRAAVNVVDFDDK----YIVSASGDRTIK 279
Query: 525 AWLYDNVG--SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582
W ++ G+ C + Y RL G+S D+ + W+ GA R
Sbjct: 280 VWNTSTCEFVRTLNGHKRGIAC--LQYR---DRLVVSGSS---DNTIRLWDIECGACLRV 331
Query: 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617
G ++ ++FD RI++ D +IK WD+
Sbjct: 332 LEG-HEELVRCIRFDN--KRIVSGAYDGKIKVWDL 363
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
D+ I G+ D+TI+I++ E K L GH + L + ++++ SD+ + W+
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWD 199
Query: 946 TDTWE 950
+T E
Sbjct: 200 VNTGE 204
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 897 STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFW 944
STI +Y V E T LKGH K + F +N L S D ++ W
Sbjct: 314 STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/172 (19%), Positives = 70/172 (40%), Gaps = 47/172 (27%)
Query: 880 LAFHPQDNNIIAIGMEDSTIQIYNVR--------VDE--------VKTKLKGHQKHITGL 923
+++ P+ + I+A DS +++++VR +D+ V++ H + GL
Sbjct: 192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251
Query: 924 AFSTNLNILVSSGSDAQLIFWNTDTWEK------------RKSIAIQLPAGK------LP 965
F+++ L++ G+D ++ WN+ E +K + + G +P
Sbjct: 252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP 311
Query: 966 VGET---RVQFHSDQVRLLVNHETQL----------AIYDGSKMECIRQWVP 1004
G T + +Q+ +L H + +Y GS+ I WVP
Sbjct: 312 YGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVP 363
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 13/119 (10%)
Query: 839 VALSKNDSYVMSAG-GGKVSLFNMMNFKVMTT----------FMSPPPASTFLAFHPQDN 887
+++S +++Y+ + GK+ L+++ + +V T+ +S PA +
Sbjct: 494 ISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553
Query: 888 NIIAIGMEDSTIQIYNV-RVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
+++A G D+ I IY+V R ++ L H+ + L + T + LVSSG+DA + WN
Sbjct: 554 DLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 611
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFW 944
+ II++ + D T+ Y + DEV + GH K IT L +N L+S D ++ W
Sbjct: 309 NGRIISLSL-DGTLNFYELGHDEVLKTISGHNKGITALT----VNPLISGSYDGRIXEW 362
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 6/188 (3%)
Query: 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTM 547
R+ + G++ C ++ I S++ DGK+ W P W
Sbjct: 57 RRTLKGHGNKVLCMDWCKDKRR----IVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMAC 112
Query: 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTRNRILAA 606
Y+ G + G + + + ++++E A K+ + F + +IL A
Sbjct: 113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA 172
Query: 607 GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLR 666
D WD+++ +L S G L ++ GN V D+ + G +
Sbjct: 173 SGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-Q 231
Query: 667 ALRAIETR 674
++A ET
Sbjct: 232 CVQAFETH 239
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 461 AFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV 519
A S+ N + I+T D +WD+ SG+ L F GH A V + E + S
Sbjct: 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 520 DGKIKAW 526
D K W
Sbjct: 219 DKKAMVW 225
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 68/149 (45%), Gaps = 14/149 (9%)
Query: 803 PSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGG---KVSLF 859
SG T A+ W +G L+ + A+ V C+ L+ +++ GG K ++
Sbjct: 172 ASGDGTCAL----WDVESGQLLQSFHGHGAD--VLCLDLAPSETGNTFVSGGCDKKAMVW 225
Query: 860 NMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKH 919
+M + + + F + + ++P + A G +D+T ++Y++R D + + +
Sbjct: 226 DMRSGQCVQAFETHESDVNSVRYYPS-GDAFASGSDDATCRLYDLRADR-EVAIYSKESI 283
Query: 920 ITGLA---FSTNLNILVSSGSDAQLIFWN 945
I G + FS + +L + +D + W+
Sbjct: 284 IFGASSVDFSLSGRLLFAGYNDYTINVWD 312
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 464 YPNKQLCIVTCGDDKLIRVWDLSGRKL--FQFEGHEAPVYSVCPHQKENIHFIFSTAVDG 521
+PN+Q + T G D ++ +WD+ + + HEA ++ V H N +F+ + DG
Sbjct: 245 HPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFH-PSNPEHLFTCSEDG 303
Query: 522 KIKAW 526
+ W
Sbjct: 304 SLWHW 308
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 15/120 (12%)
Query: 839 VALSKNDSYVMSAGG--GKVSLFNMMNFKVMTT----------FMSPPPASTFLAFHPQD 886
+++S +++Y+ +AG GK+ L+++ + +V T+ +S PA +
Sbjct: 494 ISISPSETYI-AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 552
Query: 887 NNIIAIGMEDSTIQIYNV-RVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
+++A G D+ I IY+V R ++ L H+ + L + T + LVSSG+DA + WN
Sbjct: 553 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 611
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
+ II++ + D T+ Y + DEV + GH K IT L +N L+S D +++ W+
Sbjct: 309 NGRIISLSL-DGTLNFYELGHDEVLKTISGHNKGITALT----VNPLISGSYDGRIMEWS 363
Query: 946 TDTWEKRKS 954
+ + + S
Sbjct: 364 SSSMHQDHS 372
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 885 QDNNIIAIGMEDSTIQIYNV---RVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQL 941
D +A+G +DS + +Y + V EVKT + H IT +AFS N LV++ ++
Sbjct: 458 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVATDQSRKV 515
Query: 942 I 942
I
Sbjct: 516 I 516
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP 960
L+GH + L ++ N +VS+ D +LI WN T +K +I + P
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP 109
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 71/182 (39%), Gaps = 37/182 (20%)
Query: 335 DLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDV--GLRERLVSKPF---K 389
++P + T H+G + S + P T L+ G GD LWDV G R + F
Sbjct: 146 NMPVSRVLTGHKGYAS-SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH 204
Query: 390 IWDMSNCSM-MLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSL 448
D+ + S+ L A + S + W + T + TY G
Sbjct: 205 TADVLSLSINSLNANMFISGSCDTTVRLWD-------LRITSRAVR--TYHG-------- 247
Query: 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQK 508
H G +N + F +P+ Q T DD R++D+ GH+ VY+ P +
Sbjct: 248 ----HEGDINSVKF-FPDGQR-FGTGSDDGTCRLFDMR-------TGHQLQVYNREPDRN 294
Query: 509 EN 510
+N
Sbjct: 295 DN 296
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRER 382
V S+++HP H T + VG G+I LWD ++ +
Sbjct: 75 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK 107
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRER 382
V S+++HP H T + VG G+I LWD ++ +
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK 108
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ 958
+ L+GH I + + T+ +LVS+ D +LI W++ T K +I ++
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 27/127 (21%)
Query: 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421
LLV DG++ +WD ++ + P + S V A++P G
Sbjct: 69 LLVSASQDGKLIIWDSYTTNKVHAIPLR-------------------SSWVMTCAYAPSG 109
Query: 422 NFIGVAFTKHLIHLY---TYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478
N++ ++ +Y T +G+ + S E+ H G ++ F N+ IVT D
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRV--SRELAGHTGYLSCCRFLDDNQ---IVTSSGDT 164
Query: 479 LIRVWDL 485
+WD+
Sbjct: 165 TCALWDI 171
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ 958
+ L+GH I + + T+ +LVS+ D +LI W++ T K +I ++
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 107
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ 958
+ L+GH I + + T+ +LVS+ D +LI W++ T K +I ++
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRER 382
S+ +HP H + + VG G+I LW+ G++++
Sbjct: 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK 154
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK--GHQKHITGLAFS 926
+T LA+HP + +A+G + I ++N + + T +K G ITGL F+
Sbjct: 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFN 173
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRER 382
S+ +HP H + + VG G+I LW+ G++++
Sbjct: 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK 154
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK--GHQKHITGLAFS 926
+T LA+HP + +A+G + I ++N + + T +K G ITGL F+
Sbjct: 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFN 173
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRER 382
S+ +HP H + + VG G+I LW+ G++++
Sbjct: 123 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK 155
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK--GHQKHITGLAFS 926
+T LA+HP + +A+G + I ++N + + T +K G ITGL F+
Sbjct: 123 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFN 174
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 890 IAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNT 946
+A+GME S +++ +V + K +L H+ + L F+ VS+G D L W T
Sbjct: 239 LAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 8/116 (6%)
Query: 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI 603
C + S D FSC + D ++ W+ L R + G A + ++
Sbjct: 144 CYALAISPDSKVCFSCCS----DGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDGTKL 198
Query: 604 LAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
G DN ++ WD+ L + + S L + G L V +++L
Sbjct: 199 WTGGLDNTVRSWDLREGRQLQQHDFTSQIFS---LGYCPTGEWLAVGMESSNVEVL 251
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 13 LQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKI 72
L LD+ +F R + E FN Y EK + D + L G + +R+ I
Sbjct: 101 LLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGI 160
Query: 73 FFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLL--TLENFRENE 128
EI LD R K ++ +K+ FN EL KE+ L +N RE E
Sbjct: 161 LVEIE-------LDNKTRFKIIKEKLKE------FNLELRKEVIDYLLENTKNVREIE 205
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 13 LQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKI 72
L LD+ +F R + E FN Y EK + D + L G + +R+ I
Sbjct: 101 LLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGI 160
Query: 73 FFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLL--TLENFRENE 128
EI LD R K ++ +K+ FN EL KE+ L +N RE E
Sbjct: 161 LVEIE-------LDNKTRFKIIKEKLKE------FNLELRKEVIDYLLENTKNVREIE 205
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 13 LQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKI 72
L LD+ +F R + E FN Y EK + D + L G + +R+ I
Sbjct: 100 LLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGI 159
Query: 73 FFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLL--TLENFRENE 128
EI LD R K ++ +K+ FN EL KE+ L +N RE E
Sbjct: 160 LVEIE-------LDNKTRFKIIKEKLKE------FNLELRKEVIDYLLENTKNVREIE 204
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ 958
+ L+GH I + + T+ +L+S+ D +LI W++ T K +I ++
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR 96
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ 958
+ L+GH I + + T+ +L+S+ D +LI W++ T K +I ++
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR 96
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 113/322 (35%), Gaps = 35/322 (10%)
Query: 732 RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQ 791
R +E + K W+LT I+ L+ S + ++V L +++ G I+ NG
Sbjct: 74 RIVETDQEGKKYWKLT-IIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGEL 132
Query: 792 KLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA 851
+LW N A + W +++ DV EN + ++ + + +
Sbjct: 133 RLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV-ENVTILWNVISGTVMQHFELKE 191
Query: 852 GGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911
GG S N N S + D++ I I +Y +
Sbjct: 192 TGG--SSINAENHS--------GDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTG 241
Query: 912 KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI--AIQLPAGKLPVGET 969
KL GH I+ L F+ +L+S+ D L W+ + Q VG+
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD 301
Query: 970 RVQFHS--DQVRLLV---NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLI 1024
+V S VRL N L+I DG PI + S + Q
Sbjct: 302 KVISCSMDGSVRLWSLKQNTLLALSIVDG----------------VPIFAGRISQDGQKY 345
Query: 1025 YATFTDGSIGVFDADSLRLRCR 1046
F DG + V+D L + R
Sbjct: 346 AVAFMDGQVNVYDLKKLNSKSR 367
>pdb|3VGZ|A Chain A, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|B Chain B, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|C Chain C, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|D Chain D, Crystal Structure Of E. Coli Ynce
Length = 353
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 842 SKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSP 873
++N++YV GKVS+ + ++KV+ TF +P
Sbjct: 282 ARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP 313
>pdb|3VH0|A Chain A, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|B Chain B, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|C Chain C, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|D Chain D, Crystal Structure Of E. Coli Ynce Complexed With Dna
Length = 353
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 842 SKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSP 873
++N++YV GKVS+ + ++KV+ TF +P
Sbjct: 282 ARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP 313
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 452 AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL--SGRKLF-QFEGHEAPVYSVCPHQK 508
+H ++D Y +L TC D+ ++++D+ G+ L GHE PV+ V
Sbjct: 11 SHEDMIHDAQMDYYGTRL--ATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP 68
Query: 509 ENIHFIFSTAVDGKIKAWLYDN 530
+ + S + D K+ W +N
Sbjct: 69 MYGNILASCSYDRKVIIWREEN 90
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW---DLSGRKLFQFEGHEAPVYSVC- 504
++ H G V +A+++P + +C D+ + +W + + K + GH++ V SVC
Sbjct: 52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCW 111
Query: 505 -PH 506
PH
Sbjct: 112 APH 114
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 890 IAIGMEDSTIQIYNVRVDE--VKTKLKGHQKHITGLAFSTNL--NILVSSGSDAQLIFWN 945
+A D +++I++VR + L+GH+ + +A++ + NIL S D ++I W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 946 TD--TWEK 951
+ TWEK
Sbjct: 88 EENGTWEK 95
>pdb|1VIA|A Chain A, Crystal Structure Of Shikimate Kinase
pdb|1VIA|B Chain B, Crystal Structure Of Shikimate Kinase
Length = 175
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 27/150 (18%)
Query: 2 SSLSR------ELVFLILQFLDEEKFKESVHRL-EQESGFFFNMKYFEEKALAGEWDEIE 54
S+L+R +LVFL FL E+KF + V + EQ+ FF +E+ A + E
Sbjct: 18 STLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFRE---QEQKXADFFSSCE 74
Query: 55 KYL----SGFTKVDDNRYS-----MKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFS 105
K GF V + + +K FE K++ LD+ + +K + ++K
Sbjct: 75 KACIATGGGFVNVSNLEKAGFCIYLKADFEYLKKR----LDKDEISKR-PLFYDEIKAKK 129
Query: 106 TFNEELFK---EITQLLTLENFRENEQLSK 132
+NE L K + +L +EN +E LS+
Sbjct: 130 LYNERLSKYEQKANFILNIENKNIDELLSE 159
>pdb|2DA0|A Chain A, Solution Structure Of The Ph Domain Of Pip2-Dependent Arf1
Gtpase-Activating Protein From Human
Length = 114
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 781 GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVA 840
G L S+G++K+W+ R +G T + A + QP+ L+T V NAED
Sbjct: 14 GYLLKKSDGIRKVWQ-RRKCSVKNGILTISHATSNRQPAKLNLLTCQVKPNAEDKKSFDL 72
Query: 841 LSKNDSYVMSA 851
+S N +Y A
Sbjct: 73 ISHNRTYHFQA 83
>pdb|3GBS|A Chain A, Crystal Structure Of Aspergillus Oryzae Cutinase
Length = 197
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 531 VGSRVDYDAPGLWC---TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG------ALKR 581
VG R D P T+ A+ LF SK D+ +V S+G A+KR
Sbjct: 63 VGPRYTADLPSNALPEGTSQAAIAEAQGLFEQAVSKCPDTQIVAGGYSQGTAVMNGAIKR 122
Query: 582 TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM 622
+ K GVV F TRN A E QI + D V +
Sbjct: 123 LSADVQDKIKGVVLFGYTRN----AQERGQIANFPKDKVKV 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,810,900
Number of Sequences: 62578
Number of extensions: 1353472
Number of successful extensions: 3890
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 3163
Number of HSP's gapped (non-prelim): 558
length of query: 1131
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1022
effective length of database: 8,152,335
effective search space: 8331686370
effective search space used: 8331686370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)