Query 001178
Match_columns 1131
No_of_seqs 839 out of 4599
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 17:57:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 1.9E-69 4E-74 538.5 36.1 491 5-663 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 5.5E-63 1.2E-67 476.2 33.7 487 5-660 7-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 5.5E-56 1.2E-60 475.3 48.3 574 353-1039 25-619 (775)
4 KOG0319 WD40-repeat-containing 100.0 1.7E-52 3.7E-57 448.6 44.4 574 320-995 25-620 (775)
5 KOG0318 WD40 repeat stress pro 100.0 2.5E-49 5.5E-54 407.5 62.2 567 354-1094 25-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 3.9E-49 8.4E-54 422.5 64.0 582 352-1095 19-710 (893)
7 KOG0318 WD40 repeat stress pro 100.0 8.1E-49 1.8E-53 403.8 60.5 534 343-1039 55-602 (603)
8 KOG0291 WD40-repeat-containing 100.0 1.1E-47 2.4E-52 411.4 61.5 550 344-1045 52-715 (893)
9 KOG0306 WD40-repeat-containing 100.0 7E-48 1.5E-52 412.7 49.1 525 320-1040 37-665 (888)
10 KOG0271 Notchless-like WD40 re 100.0 9.3E-50 2E-54 394.2 28.6 326 343-795 111-479 (480)
11 KOG0271 Notchless-like WD40 re 100.0 3E-49 6.5E-54 390.6 30.0 367 404-945 110-479 (480)
12 KOG0306 WD40-repeat-containing 100.0 1.8E-46 3.9E-51 402.0 52.8 581 349-1095 23-665 (888)
13 KOG1408 WD40 repeat protein [F 100.0 1.5E-42 3.2E-47 368.2 42.6 610 351-1095 41-714 (1080)
14 KOG1539 WD repeat protein [Gen 100.0 1E-37 2.2E-42 339.3 56.9 583 353-1093 39-647 (910)
15 KOG0273 Beta-transducin family 100.0 4E-40 8.7E-45 335.5 33.0 304 338-664 169-484 (524)
16 KOG1063 RNA polymerase II elon 100.0 3.1E-37 6.8E-42 328.8 49.5 593 354-1094 21-763 (764)
17 KOG1063 RNA polymerase II elon 100.0 5.7E-38 1.2E-42 334.4 43.8 639 320-1039 28-763 (764)
18 KOG0279 G protein beta subunit 100.0 6.4E-39 1.4E-43 305.6 31.8 294 343-662 10-313 (315)
19 KOG0272 U4/U6 small nuclear ri 100.0 3.2E-40 6.9E-45 332.0 22.9 283 344-660 172-458 (459)
20 KOG0286 G-protein beta subunit 100.0 5.3E-38 1.1E-42 301.0 33.2 289 342-660 49-343 (343)
21 KOG1408 WD40 repeat protein [F 100.0 2.3E-37 5.1E-42 328.8 40.7 598 320-1040 52-714 (1080)
22 KOG0263 Transcription initiati 100.0 6.4E-38 1.4E-42 341.6 35.9 278 329-619 359-650 (707)
23 KOG0272 U4/U6 small nuclear ri 100.0 8.9E-39 1.9E-43 321.6 23.6 284 407-795 173-458 (459)
24 KOG1539 WD repeat protein [Gen 100.0 1.4E-35 3E-40 322.9 48.9 565 346-995 75-649 (910)
25 KOG0276 Vesicle coat complex C 100.0 4.1E-36 8.9E-41 315.7 42.7 474 345-994 11-490 (794)
26 KOG0276 Vesicle coat complex C 100.0 5.7E-35 1.2E-39 307.2 44.2 464 405-1038 9-489 (794)
27 KOG0286 G-protein beta subunit 100.0 4.9E-36 1.1E-40 287.5 31.0 286 404-795 50-343 (343)
28 KOG0292 Vesicle coat complex C 100.0 8.1E-34 1.8E-38 309.5 49.1 555 346-1041 8-596 (1202)
29 KOG2106 Uncharacterized conser 100.0 4.8E-33 1E-37 285.7 49.1 526 351-1038 69-625 (626)
30 KOG0315 G-protein beta subunit 100.0 6.7E-35 1.5E-39 273.0 28.5 284 361-676 11-301 (311)
31 KOG0295 WD40 repeat-containing 100.0 2.9E-35 6.3E-40 290.7 26.5 289 340-661 101-405 (406)
32 KOG2106 Uncharacterized conser 100.0 3.1E-32 6.8E-37 279.7 49.2 524 414-1093 70-625 (626)
33 KOG0273 Beta-transducin family 100.0 3.9E-34 8.5E-39 291.9 32.1 335 407-947 176-523 (524)
34 KOG0279 G protein beta subunit 100.0 9.6E-34 2.1E-38 270.4 32.4 249 403-664 9-264 (315)
35 KOG0315 G-protein beta subunit 100.0 1.2E-33 2.6E-38 264.6 31.7 295 512-926 11-309 (311)
36 KOG0296 Angio-associated migra 100.0 4.5E-33 9.7E-38 275.6 34.8 338 449-947 59-398 (399)
37 KOG0292 Vesicle coat complex C 100.0 8.7E-32 1.9E-36 293.8 46.2 556 405-1098 5-598 (1202)
38 KOG0284 Polyadenylation factor 100.0 5.1E-35 1.1E-39 293.0 18.5 282 346-661 95-379 (464)
39 KOG0296 Angio-associated migra 100.0 1.3E-32 2.8E-37 272.4 34.3 329 404-905 59-398 (399)
40 KOG0285 Pleiotropic regulator 100.0 1.2E-33 2.7E-38 277.7 26.1 292 338-663 141-440 (460)
41 KOG0645 WD40 repeat protein [G 100.0 1.2E-32 2.5E-37 261.7 31.3 285 345-662 12-311 (312)
42 KOG0265 U5 snRNP-specific prot 100.0 4E-33 8.7E-38 268.9 28.0 285 343-659 43-335 (338)
43 KOG2048 WD40 repeat protein [G 100.0 1.1E-29 2.4E-34 271.4 53.0 550 408-1094 24-601 (691)
44 KOG0316 Conserved WD40 repeat- 100.0 8.5E-33 1.8E-37 256.6 25.4 287 337-660 6-297 (307)
45 KOG0285 Pleiotropic regulator 100.0 1.3E-32 2.8E-37 270.6 24.9 245 404-664 146-391 (460)
46 KOG0295 WD40 repeat-containing 100.0 1.7E-32 3.6E-37 271.3 24.6 300 449-946 103-405 (406)
47 KOG0266 WD40 repeat-containing 100.0 8.5E-32 1.8E-36 307.4 32.6 284 346-661 158-453 (456)
48 KOG0281 Beta-TrCP (transducin 100.0 7.7E-33 1.7E-37 270.7 15.0 274 346-665 196-480 (499)
49 KOG0265 U5 snRNP-specific prot 100.0 5.3E-31 1.1E-35 254.3 26.8 249 404-663 42-297 (338)
50 KOG0645 WD40 repeat protein [G 100.0 4.2E-30 9.2E-35 244.4 32.2 242 404-662 9-261 (312)
51 KOG0293 WD40 repeat-containing 100.0 5.5E-31 1.2E-35 264.0 25.2 291 404-905 219-513 (519)
52 KOG0263 Transcription initiati 100.0 1.7E-31 3.8E-36 291.5 23.3 245 409-664 378-651 (707)
53 KOG0282 mRNA splicing factor [ 100.0 4.6E-32 9.9E-37 278.4 16.9 291 337-660 203-503 (503)
54 KOG0266 WD40 repeat-containing 100.0 4.4E-30 9.6E-35 293.3 33.5 291 766-1094 158-454 (456)
55 KOG2048 WD40 repeat protein [G 100.0 3.1E-27 6.8E-32 252.8 52.2 498 454-1093 25-547 (691)
56 KOG1445 Tumor-specific antigen 100.0 1.1E-29 2.4E-34 267.0 32.8 638 345-1040 77-845 (1012)
57 KOG0284 Polyadenylation factor 100.0 1.3E-31 2.8E-36 268.7 16.9 284 409-798 96-381 (464)
58 cd00200 WD40 WD40 domain, foun 100.0 2E-29 4.3E-34 276.6 36.2 282 345-660 7-289 (289)
59 KOG0282 mRNA splicing factor [ 100.0 9.4E-31 2E-35 268.8 20.5 287 764-1092 211-503 (503)
60 KOG0278 Serine/threonine kinas 100.0 1.1E-30 2.3E-35 244.7 18.5 284 344-664 11-299 (334)
61 KOG0275 Conserved WD40 repeat- 100.0 1.1E-30 2.3E-35 253.1 16.3 293 766-1093 212-508 (508)
62 KOG0641 WD40 repeat protein [G 100.0 3.2E-28 7E-33 224.3 31.7 311 339-662 24-349 (350)
63 PLN00181 protein SPA1-RELATED; 100.0 1.9E-28 4.1E-33 302.9 40.2 291 345-661 481-792 (793)
64 KOG0310 Conserved WD40 repeat- 100.0 9.1E-29 2E-33 254.9 27.8 281 346-660 25-307 (487)
65 KOG0316 Conserved WD40 repeat- 100.0 4.3E-29 9.4E-34 232.1 22.8 247 402-664 10-259 (307)
66 KOG0313 Microtubule binding pr 100.0 1.1E-28 2.3E-33 245.8 26.1 288 337-661 95-417 (423)
67 KOG0281 Beta-TrCP (transducin 100.0 7.3E-30 1.6E-34 249.9 15.7 230 409-664 197-430 (499)
68 KOG0640 mRNA cleavage stimulat 100.0 1.5E-28 3.2E-33 237.4 24.3 295 264-617 121-425 (430)
69 cd00200 WD40 WD40 domain, foun 100.0 1.7E-27 3.7E-32 261.2 34.9 247 404-664 4-251 (289)
70 KOG0973 Histone transcription 100.0 2.5E-28 5.4E-33 276.5 28.4 305 346-664 12-357 (942)
71 KOG0288 WD40 repeat protein Ti 100.0 3.2E-29 6.9E-34 252.1 18.7 291 336-659 163-458 (459)
72 KOG0278 Serine/threonine kinas 100.0 3.1E-29 6.7E-34 235.0 16.5 300 764-1112 11-317 (334)
73 PLN00181 protein SPA1-RELATED; 100.0 3.1E-27 6.7E-32 292.1 39.7 270 369-664 457-740 (793)
74 KOG1407 WD40 repeat protein [F 100.0 2.2E-27 4.7E-32 224.6 28.1 274 345-653 18-293 (313)
75 KOG0643 Translation initiation 100.0 1.1E-27 2.4E-32 227.2 22.8 285 343-663 6-318 (327)
76 KOG0647 mRNA export protein (c 100.0 1.1E-26 2.4E-31 224.6 26.4 273 346-651 26-312 (347)
77 KOG0283 WD40 repeat-containing 100.0 1E-26 2.2E-31 257.0 29.7 299 345-663 265-577 (712)
78 KOG0643 Translation initiation 100.0 3.8E-26 8.3E-31 216.8 29.2 236 404-654 5-253 (327)
79 KOG0274 Cdc4 and related F-box 100.0 1.2E-26 2.6E-31 262.2 30.0 278 345-665 206-485 (537)
80 PTZ00421 coronin; Provisional 100.0 9.6E-26 2.1E-30 255.3 36.1 288 346-644 19-315 (493)
81 KOG0973 Histone transcription 100.0 1E-26 2.2E-31 263.5 27.5 304 766-1097 12-358 (942)
82 KOG0313 Microtubule binding pr 100.0 3.7E-26 8E-31 227.8 27.3 284 451-905 102-418 (423)
83 KOG0640 mRNA cleavage stimulat 100.0 1.7E-26 3.8E-31 223.2 23.4 304 342-661 107-425 (430)
84 KOG0277 Peroxisomal targeting 99.9 1.9E-26 4.1E-31 217.3 21.7 283 351-661 12-308 (311)
85 KOG1446 Histone H3 (Lys4) meth 99.9 6.1E-25 1.3E-29 215.4 32.9 281 346-662 13-303 (311)
86 KOG1445 Tumor-specific antigen 99.9 3.5E-24 7.6E-29 225.9 40.7 625 445-1099 70-849 (1012)
87 KOG0772 Uncharacterized conser 99.9 2E-26 4.4E-31 237.8 23.4 293 345-661 165-486 (641)
88 KOG0305 Anaphase promoting com 99.9 4.3E-26 9.3E-31 246.4 26.7 273 316-620 187-463 (484)
89 KOG0277 Peroxisomal targeting 99.9 3E-26 6.6E-31 215.9 20.3 267 322-617 34-308 (311)
90 KOG0772 Uncharacterized conser 99.9 9.9E-26 2.1E-30 232.8 25.1 296 765-1094 165-488 (641)
91 KOG1446 Histone H3 (Lys4) meth 99.9 1.9E-24 4.1E-29 211.9 32.7 290 766-1097 13-306 (311)
92 KOG0641 WD40 repeat protein [G 99.9 2.2E-24 4.9E-29 199.0 30.6 307 766-1094 31-349 (350)
93 KOG1407 WD40 repeat protein [F 99.9 4.4E-25 9.5E-30 209.1 26.3 247 405-664 16-263 (313)
94 KOG0305 Anaphase promoting com 99.9 2.7E-25 5.9E-30 240.2 28.1 278 350-664 180-463 (484)
95 KOG0283 WD40 repeat-containing 99.9 1.8E-25 3.9E-30 247.2 26.8 274 765-1042 265-579 (712)
96 KOG0299 U3 snoRNP-associated p 99.9 3.3E-25 7.2E-30 226.8 26.5 296 344-661 139-455 (479)
97 KOG0310 Conserved WD40 repeat- 99.9 1.8E-25 3.8E-30 230.8 24.2 286 764-1096 23-311 (487)
98 KOG2096 WD40 repeat protein [G 99.9 1.6E-24 3.5E-29 210.7 28.8 253 769-1038 134-401 (420)
99 KOG0308 Conserved WD40 repeat- 99.9 1.7E-25 3.7E-30 237.8 22.9 292 346-662 20-327 (735)
100 KOG0294 WD40 repeat-containing 99.9 3E-24 6.4E-29 209.2 28.6 241 831-1097 41-284 (362)
101 PTZ00420 coronin; Provisional 99.9 6.9E-24 1.5E-28 240.5 36.4 255 366-644 50-318 (568)
102 KOG0308 Conserved WD40 repeat- 99.9 1.1E-25 2.5E-30 239.2 20.2 236 419-664 35-287 (735)
103 KOG0299 U3 snoRNP-associated p 99.9 8E-25 1.7E-29 224.0 25.2 252 404-666 137-414 (479)
104 KOG1963 WD40 repeat protein [G 99.9 4.5E-23 9.7E-28 228.8 40.7 504 413-1100 20-589 (792)
105 KOG0301 Phospholipase A2-activ 99.9 1.1E-24 2.4E-29 233.7 26.8 281 340-663 6-289 (745)
106 PTZ00421 coronin; Provisional 99.9 3.6E-24 7.8E-29 242.6 32.0 249 408-664 19-292 (493)
107 KOG0289 mRNA splicing factor [ 99.9 3.3E-24 7.2E-29 217.3 27.9 284 347-661 219-505 (506)
108 KOG2096 WD40 repeat protein [G 99.9 4E-24 8.7E-29 207.9 27.2 202 404-618 81-308 (420)
109 KOG0274 Cdc4 and related F-box 99.9 7.3E-25 1.6E-29 247.8 25.8 259 328-626 230-490 (537)
110 KOG0268 Sof1-like rRNA process 99.9 9.5E-26 2.1E-30 223.2 15.6 282 345-664 64-347 (433)
111 KOG0647 mRNA export protein (c 99.9 3.8E-24 8.3E-29 207.2 25.9 250 405-664 23-283 (347)
112 KOG0288 WD40 repeat protein Ti 99.9 1.2E-25 2.7E-30 226.5 16.2 247 404-664 170-419 (459)
113 KOG0289 mRNA splicing factor [ 99.9 5E-24 1.1E-28 216.0 27.2 240 766-1038 260-505 (506)
114 KOG0300 WD40 repeat-containing 99.9 1.6E-24 3.5E-29 210.0 22.4 296 338-664 138-478 (481)
115 KOG1036 Mitotic spindle checkp 99.9 1.4E-23 3.1E-28 204.4 27.6 268 346-652 12-294 (323)
116 KOG0268 Sof1-like rRNA process 99.9 4.1E-25 8.9E-30 218.8 16.2 241 405-664 62-304 (433)
117 KOG0639 Transducin-like enhanc 99.9 1.6E-24 3.5E-29 222.7 20.5 292 339-661 411-703 (705)
118 KOG1274 WD40 repeat protein [G 99.9 2.7E-20 5.9E-25 206.8 54.3 277 345-659 11-297 (933)
119 KOG0294 WD40 repeat-containing 99.9 2.6E-23 5.6E-28 202.7 26.4 243 404-664 38-283 (362)
120 KOG1332 Vesicle coat complex C 99.9 1.7E-24 3.7E-29 203.0 17.4 252 404-662 6-286 (299)
121 KOG0300 WD40 repeat-containing 99.9 1.1E-23 2.4E-28 204.3 21.6 322 449-948 143-477 (481)
122 KOG1273 WD40 repeat protein [G 99.9 3.5E-23 7.5E-28 201.2 24.5 298 335-664 12-324 (405)
123 KOG1332 Vesicle coat complex C 99.9 5.1E-24 1.1E-28 199.8 18.1 253 345-619 9-287 (299)
124 KOG0264 Nucleosome remodeling 99.9 1.4E-23 3.1E-28 215.5 22.4 264 340-619 117-405 (422)
125 PTZ00420 coronin; Provisional 99.9 1.6E-22 3.4E-27 229.5 33.2 227 427-664 50-295 (568)
126 KOG1036 Mitotic spindle checkp 99.9 3.1E-22 6.7E-27 195.2 27.8 243 406-664 10-264 (323)
127 KOG1274 WD40 repeat protein [G 99.9 1.8E-19 4E-24 200.4 52.4 247 406-664 10-264 (933)
128 KOG1963 WD40 repeat protein [G 99.9 1.6E-20 3.5E-25 208.7 43.5 507 353-1000 22-589 (792)
129 KOG0301 Phospholipase A2-activ 99.9 9.7E-23 2.1E-27 218.9 24.8 275 764-1094 11-288 (745)
130 KOG1538 Uncharacterized conser 99.9 7.5E-22 1.6E-26 209.7 28.3 273 349-663 14-294 (1081)
131 KOG0639 Transducin-like enhanc 99.9 8.4E-23 1.8E-27 210.2 20.5 281 766-1093 418-703 (705)
132 KOG2055 WD40 repeat protein [G 99.9 5E-22 1.1E-26 203.5 24.7 290 589-1039 214-512 (514)
133 KOG0646 WD40 repeat protein [G 99.9 3.5E-22 7.5E-27 205.4 23.6 223 409-643 81-330 (476)
134 KOG4283 Transcription-coupled 99.9 1.2E-21 2.6E-26 188.7 25.7 300 345-661 41-364 (397)
135 KOG2055 WD40 repeat protein [G 99.9 6.1E-22 1.3E-26 202.8 24.4 287 347-662 213-512 (514)
136 KOG0646 WD40 repeat protein [G 99.9 1.5E-21 3.3E-26 200.7 26.2 293 566-978 17-332 (476)
137 KOG4328 WD40 protein [Function 99.9 1.4E-21 2.9E-26 200.2 25.0 293 346-662 185-495 (498)
138 KOG4283 Transcription-coupled 99.9 2.7E-21 5.8E-26 186.3 23.8 247 764-1038 98-364 (397)
139 KOG0264 Nucleosome remodeling 99.9 1.3E-21 2.7E-26 201.3 22.6 253 405-664 120-406 (422)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.7E-20 2.1E-24 201.2 37.4 206 837-1049 76-289 (300)
141 KOG0267 Microtubule severing p 99.9 1.7E-22 3.6E-27 217.8 10.7 235 405-653 24-259 (825)
142 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.4E-19 9.5E-24 195.9 37.7 291 470-927 3-300 (300)
143 KOG1273 WD40 repeat protein [G 99.9 2.1E-20 4.5E-25 182.1 21.6 252 412-675 26-292 (405)
144 KOG1538 Uncharacterized conser 99.9 2.2E-19 4.7E-24 191.2 31.1 275 543-948 14-294 (1081)
145 KOG0269 WD40 repeat-containing 99.9 2.8E-21 6E-26 210.3 16.0 244 349-620 89-342 (839)
146 KOG0650 WD40 repeat nucleolar 99.9 4E-20 8.6E-25 195.2 24.0 293 335-659 387-732 (733)
147 KOG0321 WD40 repeat-containing 99.9 2.8E-20 6E-25 198.1 22.8 287 353-664 55-393 (720)
148 KOG0650 WD40 repeat nucleolar 99.9 4.9E-20 1.1E-24 194.5 24.1 324 402-859 393-732 (733)
149 KOG0321 WD40 repeat-containing 99.9 4.5E-20 9.8E-25 196.5 23.3 288 779-1096 64-393 (720)
150 KOG1009 Chromatin assembly com 99.9 1.8E-19 3.8E-24 182.3 24.6 302 346-664 12-374 (434)
151 KOG0270 WD40 repeat-containing 99.8 1.4E-19 3.1E-24 185.1 23.6 254 412-671 176-458 (463)
152 KOG2445 Nuclear pore complex c 99.8 4.2E-19 9E-24 172.9 25.6 264 345-630 11-333 (361)
153 KOG2445 Nuclear pore complex c 99.8 3.8E-19 8.2E-24 173.2 25.0 256 404-661 8-317 (361)
154 KOG0267 Microtubule severing p 99.8 4E-21 8.6E-26 207.3 10.9 233 346-610 27-260 (825)
155 KOG0269 WD40 repeat-containing 99.8 8E-20 1.7E-24 199.1 19.4 297 346-664 38-342 (839)
156 KOG0302 Ribosome Assembly prot 99.8 6.5E-19 1.4E-23 176.1 20.8 250 831-1093 149-437 (440)
157 KOG0307 Vesicle coat complex C 99.8 1.1E-19 2.4E-24 207.6 15.6 251 409-664 64-329 (1049)
158 COG2319 FOG: WD40 repeat [Gene 99.8 5.9E-16 1.3E-20 181.4 47.4 371 405-948 61-443 (466)
159 KOG0302 Ribosome Assembly prot 99.8 1.8E-18 3.8E-23 173.1 21.3 266 337-615 141-435 (440)
160 COG2319 FOG: WD40 repeat [Gene 99.8 1.2E-15 2.5E-20 178.9 49.1 289 343-664 61-361 (466)
161 KOG4497 Uncharacterized conser 99.8 5.4E-18 1.2E-22 166.2 23.6 408 414-941 13-426 (447)
162 KOG4378 Nuclear protein COP1 [ 99.8 2.8E-18 6E-23 177.1 22.5 215 773-1021 85-305 (673)
163 KOG1034 Transcriptional repres 99.8 4.7E-18 1E-22 167.1 23.1 299 765-1093 36-382 (385)
164 KOG1034 Transcriptional repres 99.8 4E-18 8.7E-23 167.6 22.5 289 345-661 36-382 (385)
165 KOG4328 WD40 protein [Function 99.8 3.4E-18 7.4E-23 175.5 22.9 294 766-1093 185-494 (498)
166 KOG0270 WD40 repeat-containing 99.8 1.4E-18 2.9E-23 178.0 17.9 209 345-581 241-455 (463)
167 KOG1524 WD40 repeat-containing 99.8 6.8E-17 1.5E-21 168.5 30.4 491 407-1041 12-525 (737)
168 KOG2919 Guanine nucleotide-bin 99.8 9.2E-18 2E-22 164.5 22.3 228 777-1030 121-361 (406)
169 KOG1009 Chromatin assembly com 99.8 2.6E-17 5.6E-22 166.8 26.1 298 767-1095 13-373 (434)
170 KOG2919 Guanine nucleotide-bin 99.8 1.1E-17 2.4E-22 164.0 22.6 287 350-653 52-361 (406)
171 KOG4378 Nuclear protein COP1 [ 99.8 8.2E-18 1.8E-22 173.6 22.6 275 363-668 7-286 (673)
172 KOG0303 Actin-binding protein 99.8 1.1E-17 2.5E-22 168.2 22.4 248 411-665 29-297 (472)
173 KOG1912 WD40 repeat protein [G 99.8 4.3E-16 9.4E-21 169.6 35.2 633 346-1043 14-745 (1062)
174 KOG0307 Vesicle coat complex C 99.8 2E-18 4.4E-23 197.5 16.3 276 321-621 34-330 (1049)
175 KOG0644 Uncharacterized conser 99.8 1.5E-18 3.1E-23 190.1 12.6 279 342-664 185-470 (1113)
176 KOG0303 Actin-binding protein 99.8 6.4E-17 1.4E-21 162.9 23.2 233 404-643 76-320 (472)
177 KOG1524 WD40 repeat-containing 99.8 2.2E-16 4.8E-21 164.8 27.4 273 345-660 12-284 (737)
178 KOG1912 WD40 repeat protein [G 99.8 8.8E-16 1.9E-20 167.3 32.5 539 410-1040 16-657 (1062)
179 KOG1334 WD40 repeat protein [G 99.7 1.1E-17 2.3E-22 173.1 13.9 293 345-664 140-468 (559)
180 KOG0642 Cell-cycle nuclear pro 99.7 1.3E-17 2.9E-22 176.0 13.5 251 404-664 289-563 (577)
181 KOG0642 Cell-cycle nuclear pro 99.7 2.3E-17 4.9E-22 174.3 15.1 263 345-627 292-570 (577)
182 KOG4227 WD40 repeat protein [G 99.7 2.9E-16 6.4E-21 157.3 21.9 295 343-662 52-387 (609)
183 KOG4497 Uncharacterized conser 99.7 1E-15 2.3E-20 150.4 23.6 377 546-1087 13-425 (447)
184 KOG1188 WD40 repeat protein [G 99.7 3.5E-16 7.5E-21 155.2 20.2 272 362-663 42-347 (376)
185 KOG0649 WD40 repeat protein [G 99.7 4.9E-15 1.1E-19 139.6 26.2 284 768-1092 11-314 (325)
186 KOG1188 WD40 repeat protein [G 99.7 2.1E-16 4.6E-21 156.7 17.7 292 470-796 42-345 (376)
187 KOG1007 WD repeat protein TSSC 99.7 4.1E-16 8.9E-21 150.6 18.9 212 339-574 113-360 (370)
188 KOG1310 WD40 repeat protein [G 99.7 3E-16 6.4E-21 164.3 19.3 215 448-669 44-310 (758)
189 KOG0322 G-protein beta subunit 99.7 1.6E-16 3.6E-21 151.5 15.7 283 345-661 12-322 (323)
190 PRK11028 6-phosphogluconolacto 99.7 1.2E-14 2.7E-19 161.5 32.9 201 836-1039 82-304 (330)
191 KOG1007 WD repeat protein TSSC 99.7 1.2E-15 2.5E-20 147.5 20.8 183 836-1039 173-361 (370)
192 KOG0322 G-protein beta subunit 99.7 4.6E-16 1E-20 148.5 17.4 307 534-946 7-322 (323)
193 KOG0644 Uncharacterized conser 99.7 5E-17 1.1E-21 178.2 10.9 237 405-665 186-429 (1113)
194 KOG0649 WD40 repeat protein [G 99.7 1.6E-14 3.4E-19 136.3 25.8 280 349-659 12-313 (325)
195 PRK11028 6-phosphogluconolacto 99.7 3.5E-14 7.5E-19 157.9 32.6 254 834-1103 35-313 (330)
196 KOG1587 Cytoplasmic dynein int 99.7 6E-15 1.3E-19 165.7 26.2 275 324-619 220-517 (555)
197 KOG4227 WD40 repeat protein [G 99.7 9.6E-15 2.1E-19 146.6 23.8 300 536-948 51-388 (609)
198 KOG1517 Guanine nucleotide bin 99.7 6.3E-15 1.4E-19 166.2 24.7 202 839-1042 1171-1384(1387)
199 KOG2110 Uncharacterized conser 99.7 1.8E-13 3.8E-18 137.9 32.1 241 409-664 5-250 (391)
200 KOG1587 Cytoplasmic dynein int 99.7 2E-14 4.3E-19 161.6 27.5 249 408-664 241-518 (555)
201 KOG0290 Conserved WD40 repeat- 99.7 3.1E-14 6.7E-19 138.0 22.8 247 831-1091 94-362 (364)
202 KOG1517 Guanine nucleotide bin 99.7 2.2E-14 4.8E-19 161.9 25.1 290 349-664 1066-1383(1387)
203 KOG0974 WD-repeat protein WDR6 99.6 9.2E-13 2E-17 150.2 38.2 151 353-531 139-290 (967)
204 KOG1523 Actin-related protein 99.6 1.4E-14 3.1E-19 142.6 20.5 237 346-609 9-269 (361)
205 PRK01742 tolB translocation pr 99.6 1.4E-14 3E-19 165.8 24.2 235 369-643 183-426 (429)
206 KOG0290 Conserved WD40 repeat- 99.6 2.6E-14 5.7E-19 138.5 20.9 265 329-614 76-361 (364)
207 PF02239 Cytochrom_D1: Cytochr 99.6 9.1E-13 2E-17 145.0 35.5 334 468-956 6-356 (369)
208 KOG1240 Protein kinase contain 99.6 1.1E-13 2.3E-18 159.2 27.9 256 404-665 1043-1337(1431)
209 KOG2110 Uncharacterized conser 99.6 2.4E-13 5.2E-18 136.9 26.6 241 833-1097 5-251 (391)
210 KOG0771 Prolactin regulatory e 99.6 1.1E-14 2.4E-19 149.5 17.2 201 878-1096 148-356 (398)
211 PF02239 Cytochrom_D1: Cytochr 99.6 1.5E-12 3.3E-17 143.3 35.0 321 512-1003 6-356 (369)
212 KOG0771 Prolactin regulatory e 99.6 7.4E-15 1.6E-19 150.7 15.0 199 837-1040 148-355 (398)
213 KOG1523 Actin-related protein 99.6 9.1E-14 2E-18 137.0 21.0 259 832-1111 9-294 (361)
214 KOG1240 Protein kinase contain 99.6 1E-13 2.2E-18 159.4 23.7 177 483-664 1034-1227(1431)
215 KOG2111 Uncharacterized conser 99.6 6.2E-12 1.3E-16 124.4 31.8 240 411-664 7-258 (346)
216 KOG1334 WD40 repeat protein [G 99.6 5.1E-14 1.1E-18 146.3 17.3 294 404-747 137-466 (559)
217 KOG2139 WD40 repeat protein [G 99.6 1.4E-12 3E-17 130.6 26.6 286 347-661 98-430 (445)
218 PRK01742 tolB translocation pr 99.6 3.5E-13 7.6E-18 154.3 25.0 235 566-928 183-426 (429)
219 COG4946 Uncharacterized protei 99.6 5.8E-10 1.3E-14 115.9 45.4 104 832-937 400-508 (668)
220 KOG2041 WD40 repeat protein [G 99.6 1.4E-11 3.1E-16 133.5 34.5 572 346-1039 13-619 (1189)
221 KOG1832 HIV-1 Vpr-binding prot 99.5 8E-15 1.7E-19 161.7 8.8 216 404-649 1096-1318(1516)
222 KOG0974 WD-repeat protein WDR6 99.5 7.9E-11 1.7E-15 134.7 40.8 196 348-576 88-289 (967)
223 PRK03629 tolB translocation pr 99.5 2.1E-12 4.6E-17 147.3 28.9 238 370-642 179-427 (429)
224 KOG1272 WD40-repeat-containing 99.5 2.3E-14 4.9E-19 147.9 10.9 278 348-664 130-411 (545)
225 KOG2321 WD40 repeat protein [G 99.5 9.7E-13 2.1E-17 139.5 22.0 286 340-662 44-343 (703)
226 KOG2139 WD40 repeat protein [G 99.5 2.4E-12 5.2E-17 129.0 23.3 261 766-1039 139-431 (445)
227 PF04762 IKI3: IKI3 family; I 99.5 2.9E-08 6.3E-13 121.6 62.8 539 407-1044 73-689 (928)
228 KOG1310 WD40 repeat protein [G 99.5 1.2E-13 2.7E-18 145.0 14.0 216 404-626 45-311 (758)
229 KOG2394 WD40 protein DMR-N9 [G 99.5 9E-13 2E-17 138.7 19.2 117 833-950 290-455 (636)
230 PRK05137 tolB translocation pr 99.5 7E-12 1.5E-16 144.3 28.7 237 370-642 182-432 (435)
231 PRK04922 tolB translocation pr 99.5 6.8E-12 1.5E-16 144.1 26.8 238 370-642 184-432 (433)
232 PRK02889 tolB translocation pr 99.5 5.5E-12 1.2E-16 144.2 25.8 222 406-642 192-424 (427)
233 KOG2321 WD40 repeat protein [G 99.5 1.9E-12 4.2E-17 137.2 20.0 262 766-1041 50-345 (703)
234 KOG2111 Uncharacterized conser 99.5 7E-11 1.5E-15 117.0 28.0 238 544-906 8-257 (346)
235 PF10282 Lactonase: Lactonase, 99.5 7.2E-10 1.6E-14 123.0 40.0 209 834-1046 87-331 (345)
236 PRK03629 tolB translocation pr 99.5 7.4E-12 1.6E-16 142.8 24.6 222 344-598 195-427 (429)
237 KOG3881 Uncharacterized conser 99.5 1E-11 2.2E-16 126.3 21.5 272 346-642 54-341 (412)
238 PRK02889 tolB translocation pr 99.4 1.2E-11 2.6E-16 141.5 24.9 225 342-598 190-424 (427)
239 KOG1272 WD40-repeat-containing 99.4 3.2E-13 6.9E-18 139.5 10.1 232 409-660 129-360 (545)
240 PRK04922 tolB translocation pr 99.4 1.1E-11 2.4E-16 142.4 23.4 226 340-598 196-432 (433)
241 KOG2394 WD40 protein DMR-N9 [G 99.4 1.1E-11 2.3E-16 130.8 20.3 252 348-641 124-383 (636)
242 KOG2315 Predicted translation 99.4 3.2E-10 7E-15 121.0 30.2 252 813-1095 107-391 (566)
243 PF04762 IKI3: IKI3 family; I 99.4 2.6E-07 5.7E-12 113.4 59.4 449 410-996 22-566 (928)
244 KOG2041 WD40 repeat protein [G 99.4 1.6E-09 3.6E-14 117.9 35.0 235 407-653 12-279 (1189)
245 PRK05137 tolB translocation pr 99.4 4.1E-11 9E-16 137.9 24.5 225 341-598 195-432 (435)
246 KOG3881 Uncharacterized conser 99.4 5.4E-11 1.2E-15 121.1 21.7 244 408-664 54-322 (412)
247 COG4946 Uncharacterized protei 99.4 4.9E-09 1.1E-13 109.2 35.5 143 831-982 357-505 (668)
248 KOG1409 Uncharacterized conser 99.4 3.8E-11 8.3E-16 119.8 19.5 343 578-1039 15-394 (404)
249 PF10282 Lactonase: Lactonase, 99.4 1.4E-09 3E-14 120.8 33.5 257 833-1104 36-332 (345)
250 COG2706 3-carboxymuconate cycl 99.4 2.1E-09 4.5E-14 109.7 31.3 281 738-1044 15-328 (346)
251 COG5354 Uncharacterized protei 99.4 1E-09 2.2E-14 115.7 29.9 369 524-983 15-417 (561)
252 KOG2315 Predicted translation 99.4 7.4E-10 1.6E-14 118.4 28.5 353 522-948 12-391 (566)
253 TIGR02658 TTQ_MADH_Hv methylam 99.3 6.9E-09 1.5E-13 111.2 35.3 203 837-1048 108-339 (352)
254 PF08662 eIF2A: Eukaryotic tra 99.3 9.3E-11 2E-15 117.0 19.6 155 878-1048 9-187 (194)
255 KOG1354 Serine/threonine prote 99.3 1.1E-10 2.5E-15 116.4 18.8 262 346-621 24-362 (433)
256 PRK00178 tolB translocation pr 99.3 7.6E-10 1.7E-14 127.9 28.9 223 405-642 194-427 (430)
257 KOG2314 Translation initiation 99.3 2.8E-09 6.1E-14 113.2 29.7 327 544-1040 213-574 (698)
258 KOG1354 Serine/threonine prote 99.3 7.1E-10 1.5E-14 110.8 23.6 359 454-992 25-432 (433)
259 PRK04792 tolB translocation pr 99.3 7.5E-10 1.6E-14 126.9 27.0 223 405-642 213-446 (448)
260 PRK01029 tolB translocation pr 99.3 7.1E-10 1.5E-14 125.9 26.5 227 346-600 183-426 (428)
261 PF08662 eIF2A: Eukaryotic tra 99.3 3.9E-10 8.4E-15 112.6 20.9 163 413-583 9-186 (194)
262 TIGR02800 propeller_TolB tol-p 99.3 7.6E-10 1.6E-14 128.0 26.5 209 405-626 185-404 (417)
263 TIGR02800 propeller_TolB tol-p 99.3 5.8E-10 1.2E-14 129.0 24.1 213 340-584 182-405 (417)
264 COG5354 Uncharacterized protei 99.3 4.7E-09 1E-13 110.8 27.9 233 838-1098 136-399 (561)
265 PRK00178 tolB translocation pr 99.3 8.2E-10 1.8E-14 127.6 25.1 228 339-598 190-427 (430)
266 COG2706 3-carboxymuconate cycl 99.2 2.6E-08 5.5E-13 101.8 31.6 257 832-1103 38-330 (346)
267 KOG2314 Translation initiation 99.2 3.4E-09 7.4E-14 112.6 26.1 237 838-1096 310-575 (698)
268 PRK04792 tolB translocation pr 99.2 5.8E-10 1.3E-14 127.8 22.5 224 343-598 213-446 (448)
269 PRK01029 tolB translocation pr 99.2 3.7E-09 8E-14 120.1 28.5 241 370-643 165-425 (428)
270 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.7E-08 3.8E-13 108.1 30.6 258 370-664 27-332 (352)
271 KOG2659 LisH motif-containing 99.2 3.2E-10 7E-15 109.3 12.7 170 3-182 24-204 (228)
272 KOG4547 WD40 repeat-containing 99.2 2.3E-09 5E-14 115.8 20.3 192 419-619 3-221 (541)
273 KOG4547 WD40 repeat-containing 99.1 7.1E-09 1.5E-13 112.1 23.0 189 842-1040 2-221 (541)
274 KOG1409 Uncharacterized conser 99.1 1.7E-09 3.7E-14 108.3 16.9 201 449-664 19-229 (404)
275 TIGR03300 assembly_YfgL outer 99.1 4.3E-08 9.3E-13 111.3 28.7 305 512-944 66-376 (377)
276 KOG1064 RAVE (regulator of V-A 99.1 9E-10 1.9E-14 131.9 14.0 200 345-587 2206-2410(2439)
277 KOG0280 Uncharacterized conser 99.0 3E-08 6.6E-13 97.5 20.8 211 326-553 46-265 (339)
278 KOG1897 Damage-specific DNA bi 99.0 0.00016 3.4E-09 83.9 56.7 629 346-1096 256-944 (1096)
279 KOG4190 Uncharacterized conser 99.0 1.8E-09 3.8E-14 114.0 11.5 241 404-661 730-987 (1034)
280 KOG0309 Conserved WD40 repeat- 99.0 3.9E-09 8.4E-14 115.7 13.8 282 314-619 24-340 (1081)
281 PLN02919 haloacid dehalogenase 99.0 4.3E-07 9.2E-12 114.0 33.2 258 837-1098 571-892 (1057)
282 KOG0280 Uncharacterized conser 98.9 1.3E-07 2.8E-12 93.2 20.1 271 369-664 45-335 (339)
283 KOG1064 RAVE (regulator of V-A 98.9 5.5E-09 1.2E-13 125.4 12.3 201 405-628 2204-2408(2439)
284 TIGR03300 assembly_YfgL outer 98.9 3.6E-07 7.9E-12 103.7 26.3 275 779-1106 65-350 (377)
285 KOG3617 WD40 and TPR repeat-co 98.9 1.7E-07 3.6E-12 104.6 21.8 106 352-484 20-129 (1416)
286 KOG4190 Uncharacterized conser 98.9 4E-09 8.7E-14 111.4 8.8 222 867-1109 728-963 (1034)
287 PF15492 Nbas_N: Neuroblastoma 98.9 1.2E-06 2.6E-11 87.1 24.9 210 838-1049 2-269 (282)
288 PLN02919 haloacid dehalogenase 98.9 1.4E-06 3E-11 109.5 31.9 258 351-622 571-892 (1057)
289 PRK04043 tolB translocation pr 98.8 8.9E-07 1.9E-11 99.9 26.0 197 348-576 188-401 (419)
290 KOG4532 WD40-like repeat conta 98.8 1.2E-06 2.5E-11 85.3 22.0 227 362-619 86-332 (344)
291 PRK04043 tolB translocation pr 98.8 2.1E-06 4.5E-11 97.0 27.1 208 855-1094 170-398 (419)
292 KOG3914 WD repeat protein WDR4 98.8 5.4E-08 1.2E-12 100.4 12.8 167 349-538 64-232 (390)
293 PF15492 Nbas_N: Neuroblastoma 98.8 4E-06 8.7E-11 83.5 25.1 219 880-1103 3-270 (282)
294 PF13360 PQQ_2: PQQ-like domai 98.8 2.8E-06 6E-11 89.7 26.2 226 853-1101 2-237 (238)
295 COG5170 CDC55 Serine/threonine 98.8 2.5E-07 5.4E-12 91.4 15.8 250 407-674 24-321 (460)
296 KOG4714 Nucleoporin [Nuclear s 98.8 1.3E-07 2.9E-12 91.3 13.5 210 349-576 38-255 (319)
297 PF07433 DUF1513: Protein of u 98.8 5.8E-06 1.3E-10 85.3 26.1 210 835-1049 6-257 (305)
298 PRK11138 outer membrane biogen 98.7 8.9E-06 1.9E-10 92.6 28.9 309 512-946 70-393 (394)
299 PF07433 DUF1513: Protein of u 98.7 7.4E-06 1.6E-10 84.6 24.8 187 838-1034 55-280 (305)
300 KOG0309 Conserved WD40 repeat- 98.7 3.6E-07 7.7E-12 100.7 15.9 294 343-664 20-341 (1081)
301 PRK11138 outer membrane biogen 98.7 1.8E-05 3.9E-10 90.2 30.7 212 852-1093 168-393 (394)
302 PF08450 SGL: SMP-30/Gluconola 98.7 4.8E-05 1E-09 80.4 31.7 218 837-1081 3-242 (246)
303 KOG4649 PQQ (pyrrolo-quinoline 98.7 0.00014 3E-09 71.1 30.7 138 512-658 24-161 (354)
304 KOG4714 Nucleoporin [Nuclear s 98.6 1.5E-06 3.4E-11 84.2 16.6 74 875-948 180-255 (319)
305 KOG4532 WD40-like repeat conta 98.6 5.9E-06 1.3E-10 80.5 20.1 175 363-560 131-321 (344)
306 PF08450 SGL: SMP-30/Gluconola 98.6 5.6E-05 1.2E-09 79.9 29.5 184 836-1028 42-244 (246)
307 COG5170 CDC55 Serine/threonine 98.6 1.9E-06 4.1E-11 85.4 16.3 257 346-617 25-366 (460)
308 KOG3914 WD repeat protein WDR4 98.6 5.8E-07 1.2E-11 93.0 12.7 160 920-1099 65-228 (390)
309 KOG0882 Cyclophilin-related pe 98.6 2.7E-06 5.8E-11 88.9 17.2 290 343-659 5-369 (558)
310 PF06433 Me-amine-dh_H: Methyl 98.6 0.00017 3.6E-09 75.6 30.0 206 838-1051 99-332 (342)
311 KOG1920 IkappaB kinase complex 98.5 1.9E-05 4.1E-10 93.2 24.5 273 766-1094 67-365 (1265)
312 KOG1645 RING-finger-containing 98.5 1.6E-05 3.4E-10 82.3 20.1 248 404-662 188-461 (463)
313 PF13360 PQQ_2: PQQ-like domai 98.5 3E-05 6.4E-10 81.9 23.0 193 844-1045 35-236 (238)
314 KOG1275 PAB-dependent poly(A) 98.5 3.1E-06 6.6E-11 96.2 15.5 181 844-1037 146-340 (1118)
315 KOG3617 WD40 and TPR repeat-co 98.4 3.7E-05 8E-10 86.6 23.1 222 413-659 19-256 (1416)
316 KOG2695 WD40 repeat protein [G 98.4 9.1E-07 2E-11 89.2 9.0 166 351-540 215-387 (425)
317 PF00400 WD40: WD domain, G-be 98.4 7.6E-07 1.7E-11 62.5 6.2 39 907-945 1-39 (39)
318 PRK02888 nitrous-oxide reducta 98.4 0.00012 2.6E-09 82.9 26.7 184 839-1040 198-405 (635)
319 KOG0882 Cyclophilin-related pe 98.4 9.8E-06 2.1E-10 84.8 16.5 213 452-672 7-240 (558)
320 KOG1832 HIV-1 Vpr-binding prot 98.4 3.9E-07 8.5E-12 102.3 6.1 201 865-1099 1092-1296(1516)
321 PF06433 Me-amine-dh_H: Methyl 98.4 0.00026 5.6E-09 74.3 25.9 137 521-664 17-167 (342)
322 KOG0396 Uncharacterized conser 98.3 3.9E-06 8.5E-11 86.0 11.8 120 5-125 115-242 (389)
323 KOG1897 Damage-specific DNA bi 98.3 0.016 3.4E-07 68.0 54.0 601 344-993 303-941 (1096)
324 PF10607 CLTH: CTLH/CRA C-term 98.3 2.1E-06 4.4E-11 81.9 8.9 134 38-182 5-141 (145)
325 KOG2695 WD40 repeat protein [G 98.3 2.2E-06 4.8E-11 86.5 8.4 164 459-630 216-388 (425)
326 PRK02888 nitrous-oxide reducta 98.3 0.00012 2.7E-09 82.9 23.2 104 841-948 284-405 (635)
327 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.0018 4E-08 63.5 27.6 115 354-494 17-132 (354)
328 KOG1645 RING-finger-containing 98.3 3.2E-05 6.8E-10 80.2 16.7 245 831-1095 191-462 (463)
329 KOG1920 IkappaB kinase complex 98.3 0.00024 5.2E-09 84.3 25.7 275 346-661 67-364 (1265)
330 KOG2066 Vacuolar assembly/sort 98.3 2.1E-05 4.5E-10 88.8 15.9 189 875-1094 40-233 (846)
331 KOG3621 WD40 repeat-containing 98.2 0.00024 5.3E-09 79.4 23.5 289 346-671 32-362 (726)
332 KOG2114 Vacuolar assembly/sort 98.2 9E-05 1.9E-09 84.4 19.9 206 881-1103 30-252 (933)
333 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00087 1.9E-08 74.8 28.1 254 356-650 1-298 (353)
334 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00038 8.3E-09 77.7 24.8 298 597-983 1-345 (353)
335 PF00400 WD40: WD domain, G-be 98.1 9.4E-06 2E-10 56.9 6.6 39 864-903 1-39 (39)
336 KOG2114 Vacuolar assembly/sort 98.1 0.00031 6.8E-09 80.2 21.7 203 839-1048 29-252 (933)
337 PF14583 Pectate_lyase22: Olig 98.1 0.0094 2E-07 64.2 30.1 280 354-661 42-380 (386)
338 cd00216 PQQ_DH Dehydrogenases 98.0 0.0023 5.1E-08 74.7 28.0 242 846-1105 111-435 (488)
339 cd00216 PQQ_DH Dehydrogenases 98.0 0.0031 6.7E-08 73.7 28.6 110 512-628 62-193 (488)
340 KOG3621 WD40 repeat-containing 98.0 0.00062 1.3E-08 76.3 20.9 284 766-1099 32-358 (726)
341 PF04053 Coatomer_WDAD: Coatom 98.0 0.00044 9.4E-09 77.9 20.3 223 767-1040 32-263 (443)
342 smart00668 CTLH C-terminal to 98.0 5.7E-06 1.2E-10 64.1 3.6 53 37-90 4-56 (58)
343 PF14583 Pectate_lyase22: Olig 98.0 0.0034 7.4E-08 67.4 25.3 293 770-1095 38-382 (386)
344 PF08596 Lgl_C: Lethal giant l 98.0 0.0022 4.8E-08 71.3 25.1 251 349-606 3-324 (395)
345 KOG2066 Vacuolar assembly/sort 98.0 0.00058 1.3E-08 77.6 19.8 178 779-994 49-233 (846)
346 KOG1275 PAB-dependent poly(A) 97.9 0.00016 3.4E-09 82.8 15.1 182 420-617 146-341 (1118)
347 PF08513 LisH: LisH; InterPro 97.9 1.7E-05 3.7E-10 49.1 3.7 27 6-32 1-27 (27)
348 PF11768 DUF3312: Protein of u 97.9 0.004 8.7E-08 69.2 24.0 114 833-949 205-331 (545)
349 PF04053 Coatomer_WDAD: Coatom 97.9 0.0022 4.9E-08 72.2 22.7 221 833-1097 32-265 (443)
350 PF02897 Peptidase_S9_N: Proly 97.9 0.012 2.5E-07 67.9 29.6 251 349-623 125-409 (414)
351 PF11768 DUF3312: Protein of u 97.8 0.00037 8.1E-09 77.1 15.4 133 330-485 188-328 (545)
352 smart00667 LisH Lissencephaly 97.8 2.9E-05 6.2E-10 52.4 4.1 32 4-35 2-33 (34)
353 PF08596 Lgl_C: Lethal giant l 97.8 0.0057 1.2E-07 68.1 24.0 210 835-1050 3-301 (395)
354 PF06977 SdiA-regulated: SdiA- 97.7 0.012 2.6E-07 60.6 23.2 216 869-1091 16-247 (248)
355 PF06977 SdiA-regulated: SdiA- 97.7 0.0077 1.7E-07 62.0 21.6 191 346-559 20-239 (248)
356 KOG1008 Uncharacterized conser 97.7 1.7E-05 3.6E-10 87.0 2.3 206 346-575 55-275 (783)
357 COG3391 Uncharacterized conser 97.6 0.017 3.7E-07 65.0 25.3 211 834-1051 74-295 (381)
358 PF04841 Vps16_N: Vps16, N-ter 97.6 0.029 6.4E-07 63.5 27.0 199 839-1049 34-256 (410)
359 COG0823 TolB Periplasmic compo 97.6 0.0034 7.4E-08 70.6 19.2 188 346-561 191-389 (425)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.17 3.6E-06 59.5 33.8 109 512-628 70-199 (527)
361 COG0823 TolB Periplasmic compo 97.6 0.0088 1.9E-07 67.3 22.2 191 451-653 189-390 (425)
362 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.21 4.5E-06 58.7 33.2 148 898-1049 272-500 (527)
363 PF03178 CPSF_A: CPSF A subuni 97.5 0.014 3E-07 64.4 22.3 175 854-1039 2-202 (321)
364 PRK13616 lipoprotein LpqB; Pro 97.4 0.011 2.4E-07 69.6 21.0 187 834-1033 350-562 (591)
365 PF04841 Vps16_N: Vps16, N-ter 97.4 0.38 8.3E-06 54.6 32.4 51 568-621 62-112 (410)
366 COG3391 Uncharacterized conser 97.4 0.16 3.5E-06 57.1 29.0 243 835-1097 32-286 (381)
367 COG3490 Uncharacterized protei 97.4 0.067 1.5E-06 53.8 22.0 239 835-1093 69-347 (366)
368 PF08553 VID27: VID27 cytoplas 97.3 0.018 3.8E-07 68.7 20.8 148 886-1038 492-646 (794)
369 KOG1008 Uncharacterized conser 97.3 0.00015 3.2E-09 79.9 3.1 158 499-661 58-224 (783)
370 PF00780 CNH: CNH domain; Int 97.3 0.17 3.6E-06 54.5 26.7 236 777-1051 5-267 (275)
371 COG3386 Gluconolactonase [Carb 97.3 0.041 8.8E-07 58.9 21.1 185 837-1028 69-274 (307)
372 PRK13616 lipoprotein LpqB; Pro 97.3 0.047 1E-06 64.4 23.4 212 875-1107 350-581 (591)
373 COG3490 Uncharacterized protei 97.2 0.089 1.9E-06 53.0 21.2 239 347-616 67-346 (366)
374 KOG2817 Predicted E3 ubiquitin 97.2 0.0023 4.9E-08 67.4 10.8 111 6-117 117-239 (394)
375 PF02897 Peptidase_S9_N: Proly 97.2 0.25 5.3E-06 56.9 28.7 243 411-664 125-406 (414)
376 PF14870 PSII_BNR: Photosynthe 97.2 0.44 9.5E-06 50.8 27.2 159 872-1036 142-301 (302)
377 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.17 3.6E-06 56.3 24.7 88 838-926 6-117 (415)
378 COG3386 Gluconolactonase [Carb 97.1 0.17 3.6E-06 54.4 23.6 222 354-607 31-274 (307)
379 PF03178 CPSF_A: CPSF A subuni 97.1 0.082 1.8E-06 58.3 22.0 173 371-575 3-202 (321)
380 PF08553 VID27: VID27 cytoplas 97.1 0.16 3.5E-06 60.8 25.0 93 565-660 502-604 (794)
381 KOG2395 Protein involved in va 97.0 0.04 8.6E-07 60.3 17.2 148 887-1039 346-500 (644)
382 PF00780 CNH: CNH domain; Int 97.0 0.3 6.4E-06 52.6 24.9 225 842-1098 4-259 (275)
383 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.68 1.5E-05 51.6 27.0 84 541-628 307-408 (415)
384 smart00320 WD40 WD40 repeats. 96.8 0.0028 6.1E-08 43.6 5.4 39 907-945 2-40 (40)
385 PHA02713 hypothetical protein; 96.8 0.06 1.3E-06 63.9 19.4 226 855-1108 273-545 (557)
386 PF05096 Glu_cyclase_2: Glutam 96.8 0.33 7.2E-06 49.8 21.6 203 833-1086 44-253 (264)
387 KOG4640 Anaphase-promoting com 96.8 0.0055 1.2E-07 68.2 9.5 94 875-975 21-115 (665)
388 PF07995 GSDH: Glucose / Sorbo 96.6 1.5 3.2E-05 48.3 28.2 113 349-478 3-135 (331)
389 PF14727 PHTB1_N: PTHB1 N-term 96.6 1.7 3.8E-05 48.6 30.3 285 779-1101 37-367 (418)
390 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.12 2.6E-06 44.8 14.0 102 350-481 2-109 (111)
391 KOG4640 Anaphase-promoting com 96.5 0.01 2.2E-07 66.2 9.3 92 833-926 20-114 (665)
392 PF10647 Gmad1: Lipoprotein Lp 96.5 0.78 1.7E-05 48.2 23.2 151 876-1032 25-188 (253)
393 PRK13684 Ycf48-like protein; P 96.4 1.5 3.3E-05 48.3 25.8 157 874-1038 172-330 (334)
394 PF10647 Gmad1: Lipoprotein Lp 96.4 0.48 1E-05 49.8 21.0 148 834-984 24-184 (253)
395 PRK10115 protease 2; Provision 96.4 3.6 7.9E-05 50.3 31.1 243 410-664 127-396 (686)
396 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.19 4E-06 43.7 14.2 102 412-524 2-109 (111)
397 PF07995 GSDH: Glucose / Sorbo 96.3 1.7 3.6E-05 47.9 25.1 243 835-1089 3-330 (331)
398 KOG2395 Protein involved in va 96.3 0.097 2.1E-06 57.4 14.6 143 420-574 344-499 (644)
399 PF05694 SBP56: 56kDa selenium 96.2 0.74 1.6E-05 50.4 20.6 237 778-1028 86-392 (461)
400 KOG4441 Proteins containing BT 96.2 0.46 9.9E-06 56.3 21.2 237 842-1107 282-557 (571)
401 smart00320 WD40 WD40 repeats. 96.2 0.014 3E-07 39.9 5.4 39 864-903 2-40 (40)
402 PF14870 PSII_BNR: Photosynthe 96.1 2.6 5.6E-05 45.1 28.8 151 832-991 143-301 (302)
403 PF14727 PHTB1_N: PTHB1 N-term 96.0 3.5 7.6E-05 46.2 33.6 278 357-665 34-363 (418)
404 KOG4499 Ca2+-binding protein R 96.0 1.2 2.7E-05 43.8 18.7 107 772-893 162-272 (310)
405 PF05694 SBP56: 56kDa selenium 95.8 1.6 3.5E-05 47.9 21.1 150 510-659 86-274 (461)
406 KOG2079 Vacuolar assembly/sort 95.8 0.29 6.3E-06 58.6 16.5 181 832-1021 129-340 (1206)
407 PF12894 Apc4_WD40: Anaphase-p 95.8 0.033 7.2E-07 40.1 5.7 35 346-382 10-44 (47)
408 PRK10115 protease 2; Provision 95.7 7.7 0.00017 47.5 30.7 242 768-1042 127-397 (686)
409 KOG4499 Ca2+-binding protein R 95.6 1.6 3.4E-05 43.1 17.9 137 454-599 108-264 (310)
410 PHA02713 hypothetical protein; 95.6 0.59 1.3E-05 55.6 18.8 185 843-1043 302-537 (557)
411 COG3204 Uncharacterized protei 95.6 1.3 2.7E-05 45.6 17.9 174 913-1096 81-265 (316)
412 KOG2444 WD40 repeat protein [G 95.5 0.036 7.8E-07 54.2 6.8 104 845-948 70-178 (238)
413 TIGR03074 PQQ_membr_DH membran 95.5 4.4 9.6E-05 49.6 26.0 239 844-1102 194-485 (764)
414 COG3823 Glutamine cyclotransfe 95.5 0.8 1.7E-05 44.2 15.3 102 844-948 55-159 (262)
415 PF12894 Apc4_WD40: Anaphase-p 95.5 0.05 1.1E-06 39.2 5.8 33 409-442 11-43 (47)
416 COG3204 Uncharacterized protei 95.3 4.1 8.9E-05 42.1 20.8 176 871-1048 82-271 (316)
417 KOG4441 Proteins containing BT 95.3 1.7 3.6E-05 51.7 20.9 233 420-664 284-548 (571)
418 KOG2079 Vacuolar assembly/sort 95.2 0.24 5.3E-06 59.2 13.1 103 420-528 98-202 (1206)
419 KOG2444 WD40 repeat protein [G 94.8 0.034 7.4E-07 54.3 4.2 127 425-559 34-163 (238)
420 PF10168 Nup88: Nuclear pore c 94.7 5.2 0.00011 48.5 23.0 74 875-950 85-182 (717)
421 PF15390 DUF4613: Domain of un 94.3 12 0.00026 42.7 29.2 151 455-619 20-187 (671)
422 PF15390 DUF4613: Domain of un 94.3 0.89 1.9E-05 51.2 14.1 153 875-1039 20-186 (671)
423 PHA03098 kelch-like protein; P 94.1 1.7 3.7E-05 51.9 17.8 194 886-1105 294-520 (534)
424 TIGR03074 PQQ_membr_DH membran 94.1 20 0.00043 44.1 39.0 197 470-666 196-481 (764)
425 KOG4460 Nuclear pore complex, 94.0 0.65 1.4E-05 51.1 12.1 97 1009-1108 103-212 (741)
426 PF12234 Rav1p_C: RAVE protein 93.9 1.6 3.4E-05 51.3 15.8 112 456-575 31-156 (631)
427 PHA03098 kelch-like protein; P 93.9 1.5 3.2E-05 52.5 16.6 188 843-1042 293-514 (534)
428 PLN00033 photosystem II stabil 93.7 15 0.00032 41.3 27.5 152 878-1036 242-396 (398)
429 COG4257 Vgb Streptogramin lyas 93.7 8.6 0.00019 39.2 18.0 193 876-1097 63-265 (353)
430 PRK13684 Ycf48-like protein; P 93.5 14 0.00031 40.7 29.2 158 917-1094 172-331 (334)
431 KOG1916 Nuclear protein, conta 93.5 0.12 2.6E-06 60.2 5.9 199 831-1039 130-374 (1283)
432 KOG1898 Splicing factor 3b, su 93.5 24 0.00052 43.2 35.4 113 968-1095 936-1049(1205)
433 PF10168 Nup88: Nuclear pore c 93.3 1.3 2.9E-05 53.4 14.5 92 1009-1104 84-189 (717)
434 PHA02790 Kelch-like protein; P 93.2 3.3 7.1E-05 48.4 17.4 185 844-1042 271-473 (480)
435 PF05096 Glu_cyclase_2: Glutam 93.2 12 0.00026 38.7 20.9 192 766-984 43-249 (264)
436 PF12234 Rav1p_C: RAVE protein 93.1 3.1 6.7E-05 48.9 16.5 120 869-993 24-155 (631)
437 KOG3630 Nuclear pore complex, 92.9 0.94 2E-05 54.8 12.0 146 833-982 100-260 (1405)
438 KOG3630 Nuclear pore complex, 92.7 2.3 5.1E-05 51.6 14.8 147 918-1076 101-256 (1405)
439 KOG2280 Vacuolar assembly/sort 92.6 12 0.00026 44.0 19.6 177 411-598 85-269 (829)
440 COG1520 FOG: WD40-like repeat 92.4 20 0.00043 40.4 22.0 203 841-1050 65-279 (370)
441 COG1520 FOG: WD40-like repeat 92.3 8.9 0.00019 43.2 18.9 206 889-1105 70-279 (370)
442 KOG2280 Vacuolar assembly/sort 92.1 7.2 0.00016 45.6 17.1 148 896-1048 63-255 (829)
443 PF10313 DUF2415: Uncharacteri 91.6 0.61 1.3E-05 32.5 5.1 32 348-379 1-34 (43)
444 TIGR02604 Piru_Ver_Nterm putat 91.4 5.9 0.00013 44.5 16.0 147 875-1028 14-202 (367)
445 KOG1916 Nuclear protein, conta 91.1 0.51 1.1E-05 55.3 7.0 126 346-497 131-282 (1283)
446 PHA02790 Kelch-like protein; P 91.1 8.1 0.00018 45.2 17.4 188 886-1102 271-476 (480)
447 KOG2247 WD40 repeat-containing 90.8 0.077 1.7E-06 57.6 0.3 241 772-1045 39-286 (615)
448 KOG4659 Uncharacterized conser 90.5 58 0.0013 41.0 31.8 26 764-789 658-683 (1899)
449 TIGR02604 Piru_Ver_Nterm putat 90.4 11 0.00023 42.4 16.9 149 918-1086 14-205 (367)
450 PF13449 Phytase-like: Esteras 90.4 15 0.00032 40.4 17.7 164 874-1039 19-249 (326)
451 PF10313 DUF2415: Uncharacteri 90.2 1.1 2.5E-05 31.2 5.4 31 410-440 1-34 (43)
452 COG3292 Predicted periplasmic 90.2 39 0.00085 38.6 23.5 139 409-559 164-307 (671)
453 PF08728 CRT10: CRT10; InterP 90.0 4.8 0.0001 47.8 13.8 173 845-1038 49-245 (717)
454 PF14761 HPS3_N: Hermansky-Pud 90.0 13 0.00029 36.9 14.6 154 930-1094 29-214 (215)
455 PF14781 BBS2_N: Ciliary BBSom 89.8 11 0.00025 34.1 12.7 115 973-1103 6-134 (136)
456 COG4590 ABC-type uncharacteriz 89.8 1.2 2.6E-05 48.1 7.9 159 832-998 219-390 (733)
457 TIGR03118 PEPCTERM_chp_1 conse 89.5 30 0.00065 36.3 22.6 207 835-1051 24-291 (336)
458 COG3292 Predicted periplasmic 89.4 30 0.00064 39.5 18.2 277 344-658 161-443 (671)
459 PLN02153 epithiospecifier prot 89.3 33 0.00072 38.1 19.8 23 928-950 85-112 (341)
460 KOG2377 Uncharacterized conser 88.9 5.1 0.00011 43.7 11.7 115 346-480 65-179 (657)
461 smart00036 CNH Domain found in 88.7 39 0.00085 36.6 26.9 210 832-1049 41-280 (302)
462 COG5290 IkappaB kinase complex 88.6 29 0.00062 41.0 17.9 93 923-1022 252-349 (1243)
463 KOG1900 Nuclear pore complex, 88.5 23 0.00051 44.5 18.3 148 893-1040 95-273 (1311)
464 PF02333 Phytase: Phytase; In 88.5 44 0.00096 36.9 22.7 188 470-664 70-292 (381)
465 PF14761 HPS3_N: Hermansky-Pud 88.4 24 0.00052 35.2 15.1 147 888-1038 29-213 (215)
466 PF05935 Arylsulfotrans: Aryls 88.4 20 0.00044 41.7 17.7 41 1067-1107 274-314 (477)
467 PF07676 PD40: WD40-like Beta 88.3 1.6 3.5E-05 30.0 5.3 31 345-375 6-38 (39)
468 KOG1900 Nuclear pore complex, 88.0 6.3 0.00014 49.2 13.2 166 337-530 68-273 (1311)
469 COG4590 ABC-type uncharacteriz 87.9 9.8 0.00021 41.5 13.0 162 766-949 219-388 (733)
470 PF11725 AvrE: Pathogenicity f 87.7 37 0.0008 44.1 19.6 69 917-992 702-770 (1774)
471 PF02333 Phytase: Phytase; In 87.5 51 0.0011 36.5 25.1 198 843-1048 66-300 (381)
472 PF12657 TFIIIC_delta: Transcr 87.3 3.6 7.7E-05 40.3 9.1 31 410-440 86-122 (173)
473 PF07569 Hira: TUP1-like enhan 87.1 2.5 5.5E-05 43.0 8.2 72 925-996 18-97 (219)
474 PF08728 CRT10: CRT10; InterP 86.3 24 0.00051 42.3 16.3 110 835-946 102-245 (717)
475 COG5167 VID27 Protein involved 86.1 13 0.00028 41.3 12.9 152 886-1047 478-642 (776)
476 TIGR03606 non_repeat_PQQ dehyd 86.1 69 0.0015 36.6 19.8 110 874-985 29-165 (454)
477 COG3823 Glutamine cyclotransfe 85.9 16 0.00036 35.7 12.0 110 510-626 55-166 (262)
478 PF13449 Phytase-like: Esteras 85.9 53 0.0011 36.1 18.4 160 766-934 18-231 (326)
479 KOG2377 Uncharacterized conser 85.8 36 0.00077 37.5 15.8 122 915-1042 64-188 (657)
480 KOG1898 Splicing factor 3b, su 85.3 1.1E+02 0.0023 38.1 37.4 104 839-947 939-1048(1205)
481 COG4257 Vgb Streptogramin lyas 84.3 54 0.0012 33.8 17.1 196 458-664 65-264 (353)
482 cd08044 TAF5_NTD2 TAF5_NTD2 is 83.6 2.9 6.2E-05 38.8 6.1 59 67-126 25-83 (133)
483 COG5167 VID27 Protein involved 82.9 17 0.00038 40.4 12.1 135 516-661 485-631 (776)
484 KOG2063 Vacuolar assembly/sort 82.7 52 0.0011 40.6 17.4 251 773-1048 20-277 (877)
485 PF14781 BBS2_N: Ciliary BBSom 82.4 29 0.00062 31.7 11.4 117 923-1046 4-132 (136)
486 TIGR02276 beta_rpt_yvtn 40-res 82.2 6.7 0.00015 27.3 6.3 39 843-882 1-41 (42)
487 PF07569 Hira: TUP1-like enhan 81.5 7.3 0.00016 39.7 8.6 72 355-440 18-96 (219)
488 TIGR03606 non_repeat_PQQ dehyd 81.5 1.1E+02 0.0023 35.2 28.5 63 346-421 28-90 (454)
489 PF10395 Utp8: Utp8 family; I 81.3 1.3E+02 0.0028 36.0 19.6 166 409-584 129-314 (670)
490 PLN02193 nitrile-specifier pro 80.9 1.2E+02 0.0026 35.4 20.7 111 928-1043 228-355 (470)
491 PF12768 Rax2: Cortical protei 80.8 37 0.00081 36.0 13.8 114 370-506 16-145 (281)
492 KOG2247 WD40 repeat-containing 80.6 1.2 2.7E-05 48.8 2.8 120 345-489 72-191 (615)
493 COG5290 IkappaB kinase complex 79.8 1.2E+02 0.0025 36.3 17.6 99 771-891 250-353 (1243)
494 KOG1983 Tomosyn and related SN 79.7 33 0.00072 43.7 15.2 71 541-622 198-268 (993)
495 PLN02153 epithiospecifier prot 79.4 1.1E+02 0.0023 34.0 19.9 65 886-950 85-170 (341)
496 PRK13615 lipoprotein LpqB; Pro 79.2 1.4E+02 0.0031 35.3 22.1 154 877-1039 336-502 (557)
497 PF04494 TFIID_90kDa: WD40 ass 79.2 1.9 4.1E-05 40.5 3.3 57 67-124 36-92 (142)
498 PF12657 TFIIIC_delta: Transcr 79.0 9.5 0.00021 37.3 8.3 31 918-948 86-122 (173)
499 PF10395 Utp8: Utp8 family; I 78.7 1.5E+02 0.0033 35.4 24.1 241 839-1094 33-305 (670)
500 KOG4460 Nuclear pore complex, 76.7 1.4E+02 0.0031 33.9 20.8 71 877-948 106-199 (741)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-69 Score=538.54 Aligned_cols=491 Identities=22% Similarity=0.309 Sum_probs=410.8
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc---HHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHHHHHHHH
Q 001178 5 SRELVFLILQFLDEEKFKESVHRLEQESGFFFN---MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1131)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1131)
+-|++|+++|+|+++||.+|+.+||.|||+.+. ++.|.++++.|+|+.++..+..+. .+++.....+.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999885 999999999999999999998874 3335556679999999999
Q ss_pred HHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccccccccccCCCChhHHHHHHHHHHhhcccCcCccccc
Q 001178 82 LEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKL 161 (1131)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~ 161 (1131)
||++..+....|+.+||+++.++. ++.++|++|+.-|..++-....+..........|.+|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il----- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL----- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence 999999999999999999999885 48899999998776654432222222222467899999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 001178 162 VFPSLKTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFPP 241 (1131)
Q Consensus 162 ~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~~h~c~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (1131)
+|+.||++||+||+++|++.|.|||. .+..|||.||.|.+.+. |+ .+.++|.
T Consensus 170 ----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~~qi-----p~----------qt~qil~-------- 221 (519)
T KOG0293|consen 170 ----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGRLQI-----PS----------QTWQILQ-------- 221 (519)
T ss_pred ----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCcccC-----Cc----------hhhhhHh--------
Confidence 99999999999999999999999995 66689999999999663 21 1122222
Q ss_pred CccccCchhhhhccccCCCCCccccccccccCCCCCCCccccccCCCCCCCCcccccCCCCchHHHHHhhccccCccccc
Q 001178 242 AVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYPSSDHEQLKKRLRASQSVDEAT 321 (1131)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1131)
T Consensus 222 -------------------------------------------------------------------------------- 221 (519)
T KOG0293|consen 222 -------------------------------------------------------------------------------- 221 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcccccCCCcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeeccccccccee
Q 001178 322 YPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQ 401 (1131)
Q Consensus 322 ~s~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1131)
.|+++|+.+.||++|+| ||+++.|.+..||++.....+. .
T Consensus 222 -----------------------~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~k----------------l 261 (519)
T KOG0293|consen 222 -----------------------DHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFK----------------L 261 (519)
T ss_pred -----------------------hCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCccee----------------e
Confidence 27778888888999985 8999999999999876544321 1
Q ss_pred ceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 402 ~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
..++.+|..+|..+.||||.++|++|+.|..+++||+.+|...... -.+|...+.+++|.|||. .+++|+.|+++.
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y--~~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY--PSGLGFSVSSCAWCPDGF--RFVTGSPDRTII 337 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc--ccCcCCCcceeEEccCCc--eeEecCCCCcEE
Confidence 2268899999999999999999999999999999999999866532 134668899999999999 799999999999
Q ss_pred EEeCCCceeEEecCCc-cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEe
Q 001178 482 VWDLSGRKLFQFEGHE-APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1131)
Q Consensus 482 iwd~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 560 (1131)
.||.+|+.+...++-. ..|.++++ +.||+++++.+.|..|++++.++...+.. .....+|+++.+|.|++++++.-
T Consensus 338 ~wdlDgn~~~~W~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 338 MWDLDGNILGNWEGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred EecCCcchhhcccccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEc
Confidence 9999999988887654 45888888 46778999999999999999887665543 33456799999999999998876
Q ss_pred ecCCCCceEEEEeCCCCeeeEEEecccCCce-EEEEEeC-CCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSA-GVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v-~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
. +..+++||++..+.++.+.||..+.. -..||.. +..++++|++|+.|+||+..+++++..+.+|.. .|+++
T Consensus 415 ~----~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcV 488 (519)
T KOG0293|consen 415 Q----DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCV 488 (519)
T ss_pred c----cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEE
Confidence 5 88999999999999999999877532 2245543 447999999999999999999999999997765 89999
Q ss_pred EEcC-CCCEEEEEECCCcEEEEecCC
Q 001178 639 RFNK-EGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 639 ~~sp-~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
+|+| +..++|++++||+|+||....
T Consensus 489 swNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 489 SWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999 567889999999999998754
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.5e-63 Score=476.23 Aligned_cols=487 Identities=20% Similarity=0.295 Sum_probs=403.9
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc----HHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHHHHHHH
Q 001178 5 SRELVFLILQFLDEEKFKESVHRLEQESGFFFN----MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1131)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (1131)
+.+|||||.|||+|+.+++++++||+|++++|| ++.|-+.|.+|+||.+++.+++| +++.+-+..+|||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHHH
Confidence 568999999999999999999999999999998 89999999999999999999988 44445789999999
Q ss_pred HHHHHhcCCHHHHHHHHHhh--cccccccCHHHHHHHHHhhcccccccccccccCCCChhHHHHHHHHHHhhcccCcCcc
Q 001178 81 YLEALDRHDRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFR 158 (1131)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~ 158 (1131)
.|||+|.++...|+.+||+. +..|...+++||.+|..||..+.++.++.|.+ ...++.|..+.+.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999975 55566778999999999999999999888865 33455556666666655543
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 001178 159 DKLVFPSLKTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVP 238 (1131)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~~h~c~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (1131)
+||+||+.||+||++||.++.+.| ++.++ |.
T Consensus 155 -------VppSRLlaLlGQaLKWQqHQGLLP-----------------------------------PGt~i-------DL 185 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQHQGLLP-----------------------------------PGTTI-------DL 185 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhhcCCCC-----------------------------------CCcee-------ee
Confidence 999999999999999999987654 12222 55
Q ss_pred CCCCccccCchhhhhccccCCCCCccccccccccCCCCCCCccccccCCCCCCCCcccccCCCCchHHHHHhhccccCcc
Q 001178 239 FPPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYPSSDHEQLKKRLRASQSVD 318 (1131)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (1131)
|++..+-.... ...+
T Consensus 186 FRGkAA~K~~~--------------------------------------------------Ee~~--------------- 200 (508)
T KOG0275|consen 186 FRGKAAMKDQE--------------------------------------------------EERY--------------- 200 (508)
T ss_pred ccchhhhhhhH--------------------------------------------------hhhc---------------
Confidence 55532111100 0001
Q ss_pred ccccCCCCCcccccCCCcccceeee--ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeeccccc
Q 001178 319 EATYPVPSQQATWSLDDLPRAVACT--MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNC 396 (1131)
Q Consensus 319 ~~~~s~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 396 (1131)
|..+.+. ++.++.+.|..|||||++ |++|+.||.|.|||..+|+..+...+..
T Consensus 201 ------------------Pt~l~r~IKFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQA------ 255 (508)
T KOG0275|consen 201 ------------------PTQLARSIKFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQA------ 255 (508)
T ss_pred ------------------hHHhhhheecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhh------
Confidence 1112222 346778999999999995 9999999999999999999876544321
Q ss_pred ccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC
Q 001178 397 SMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD 476 (1131)
Q Consensus 397 ~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~ 476 (1131)
..-+..+..+|.|+.||.|...||+|+.||.|+||.+.+|.|++.+ -.+|+..|+|+.||.|+. .+++++.
T Consensus 256 -----qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF--drAHtkGvt~l~FSrD~S--qiLS~sf 326 (508)
T KOG0275|consen 256 -----QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF--DRAHTKGVTCLSFSRDNS--QILSASF 326 (508)
T ss_pred -----hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh--hhhhccCeeEEEEccCcc--hhhcccc
Confidence 1235578899999999999999999999999999999999998743 248999999999999999 6999999
Q ss_pred CCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC--CceEEEEEEccC-
Q 001178 477 DKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP--GLWCTTMLYSAD- 552 (1131)
Q Consensus 477 d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~- 552 (1131)
|.+++|.- .+|+++..++||+..|+...| .++|..+++++.||+|++|+..+.++..++... ..+|+++..-|.
T Consensus 327 D~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKn 404 (508)
T KOG0275|consen 327 DQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKN 404 (508)
T ss_pred cceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCC
Confidence 99999999 999999999999999999988 567799999999999999999999988876654 347888877774
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc--CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC
Q 001178 553 GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR--KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG 630 (1131)
Q Consensus 553 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1131)
...+++|.. .+++++.++. |+.++.|.... ++..-+.+.+|.|.++++.++|+.++.|...+|+...++..|.
T Consensus 405 peh~iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE 479 (508)
T KOG0275|consen 405 PEHFIVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE 479 (508)
T ss_pred CceEEEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc
Confidence 466777765 7789999975 88888886433 3345667899999999999999999999999999999998876
Q ss_pred CCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 631 GLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 631 ~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
. .+..++-+|..+.+++-+.||.+++|.
T Consensus 480 k--dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 480 K--DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred c--cccccccCcccchhhhhcccchhhhcC
Confidence 5 688999999999999999999999995
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.5e-56 Score=475.33 Aligned_cols=574 Identities=19% Similarity=0.259 Sum_probs=477.1
Q ss_pred EEEecCCCcEEEEEcCCCeEEEEECCCCcc-cccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCC
Q 001178 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRER-LVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1131)
Q Consensus 353 ~~fspdg~~llasg~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~ 431 (1131)
++||++|+ +|++.+.| .|.+-|+.+++. +.. .-......|++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~d-~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACGD-RVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecCc-eEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999998 58887654 789999999887 321 2335567899999999999999999999
Q ss_pred eEEEEEecCCCccceeeeeec-CcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccC
Q 001178 432 LIHLYTYQGSNDLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKE 509 (1131)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~-h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~ 509 (1131)
.+++|++.+++.++ .+.. |++||.-++|+|.+. ++++|+.|+.++||| ..+.+...|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998766 4556 999999999999997 899999999999999 8888999999999999999999999
Q ss_pred CccEEEEEecCCeEEEEeCCCCce-eEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccC
Q 001178 510 NIHFIFSTAVDGKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK 588 (1131)
Q Consensus 510 ~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 588 (1131)
+...|++|..|+++++||+..... ......|...|+++.|++|+..+++++. |..+.+||+.+-+..+++....
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888999999999999999986554 5677889999999999999999999997 8899999998777776665433
Q ss_pred CceEEEEEeCC-----CCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCC
Q 001178 589 KSAGVVQFDTT-----RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 589 ~~v~~~~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
.+.++.+-++ +.+++++|.+|.+++||..+++++....... ...+..+...+....++..+.|..+.++|..+
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEccc
Confidence 5667777776 6799999999999999999998876655443 22466666666666777788899999999877
Q ss_pred CchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcc
Q 001178 664 GLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKP 743 (1131)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~ 743 (1131)
. +..+.+.|..+++... .++ .+....+++++..+.+++
T Consensus 313 l-~i~k~ivG~ndEI~Dm----------------------------------~~l-------G~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDEILDM----------------------------------KFL-------GPEESHLAVATNSPELRL 350 (775)
T ss_pred c-EEehhhcCCchhheee----------------------------------eec-------CCccceEEEEeCCCceEE
Confidence 7 6777777777766531 111 123567888888899999
Q ss_pred eeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcc
Q 001178 744 WELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLL 823 (1131)
Q Consensus 744 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 823 (1131)
|++.+. .|. -+ .+|...|.++....+|..+++++.|.++++|.++.+.. +.
T Consensus 351 y~~~~~----~c~--ii---~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~--------------------~~ 401 (775)
T KOG0319|consen 351 YTLPTS----YCQ--II---PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS--------------------KS 401 (775)
T ss_pred EecCCC----ceE--EE---eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc--------------------hh
Confidence 976653 333 22 45999999999888899999999999999998733111 11
Q ss_pred cccCCCCCCCCCeeEEEecCCC-CEEEEEe-CCeEEEEECCCcee-----E----EEEeCCCCCeeEEEEeCCCCcEEEE
Q 001178 824 MTNDVPENAEDVVPCVALSKND-SYVMSAG-GGKVSLFNMMNFKV-----M----TTFMSPPPASTFLAFHPQDNNIIAI 892 (1131)
Q Consensus 824 ~~~~~~~~~~~~i~~l~~s~dg-~~la~~~-dg~i~vwd~~~~~~-----~----~~~~~~~~~i~~l~~s~~~~~~la~ 892 (1131)
.......+|...|.+++++..+ .++++++ |+++++|++...+. . .+...|...|+|++++| +..++||
T Consensus 402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT 480 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIAT 480 (775)
T ss_pred hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEe
Confidence 1111223799999999998766 4677777 99999999876211 1 12346899999999999 8999999
Q ss_pred EeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEE
Q 001178 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQ 972 (1131)
Q Consensus 893 g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~ 972 (1131)
|+.|.+.+||+++......++.||...|+++.|++..+.++|+|.|++|+||.+++..+ ++...+|. ..|..+.
T Consensus 481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC-----lkT~eGH~-~aVlra~ 554 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC-----LKTFEGHT-SAVLRAS 554 (775)
T ss_pred cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecccee-----eeeecCcc-ceeEeee
Confidence 99999999999999999999999999999999999999999999999999999999664 44455544 7899999
Q ss_pred EcCCCcEEEE-EeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 973 FHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 973 ~s~d~~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
|-.+|+.|++ ++||-+++|++++++|...+..| ...|++++.++++.++++|+.||.|.+|.=.
T Consensus 555 F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H---~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 555 FIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH---NDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred eeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc---cceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 9999998887 57999999999999999999887 8999999999999999999999999999643
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-52 Score=448.56 Aligned_cols=574 Identities=13% Similarity=0.210 Sum_probs=458.7
Q ss_pred cccCCCCCcccccCCC-------cccce-eeec--cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccce
Q 001178 320 ATYPVPSQQATWSLDD-------LPRAV-ACTM--HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFK 389 (1131)
Q Consensus 320 ~~~s~~~~~~~~~~~~-------~~~~~-~~~~--~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~ 389 (1131)
+++++.|+.......+ .+... +... +..+.+++++.+||+. .|++++..+.+++|++.+|+.++.
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs---- 99 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS---- 99 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh----
Confidence 7777777643332222 23333 3332 3678999999999998 588899999999999999988762
Q ss_pred eecccccccceeceeccC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCc
Q 001178 390 IWDMSNCSMMLQAAIVKD-SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQ 468 (1131)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~-h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 468 (1131)
++. |+++|.-++|+|.|..||+|+.|+.++|||+..+.+.. .|.||.+.|.++.|.|+-..
T Consensus 100 ---------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 100 ---------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred ---------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccch
Confidence 445 99999999999999999999999999999999987654 79999999999999998776
Q ss_pred eEEEEEcCCCcEEEEe-CCCc-eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEE
Q 001178 469 LCIVTCGDDKLIRVWD-LSGR-KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTT 546 (1131)
Q Consensus 469 ~~l~s~s~d~~i~iwd-~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 546 (1131)
-+|++|..|+++++|| .+.. ++..+..|.+.|++++|.+ |+..+++++.|..+.+||+...+....+... ..+.+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~ 238 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLES 238 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechh-hheee
Confidence 5789999999999999 4343 5788899999999999965 5689999999999999999665555444332 34677
Q ss_pred EEEccC-----CCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 547 MLYSAD-----GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 547 ~~~s~~-----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
+.+-++ |.+++++|. +|.+++||.++++++..........+..+...+....++....|..+.++|.++.+
T Consensus 239 vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred EEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 777776 679999886 89999999999988766554333345555555556678888889999999999998
Q ss_pred EEEEEeccCCCCCcceEEE-cCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccc
Q 001178 622 MLTSTEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVL 700 (1131)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~-sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 700 (1131)
....+-+.. ..|.++.| .|+.+++++++..+.+++|+..+... . .+.+|...+.. ..
T Consensus 315 i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c-~-ii~GH~e~vlS---------------L~--- 372 (775)
T KOG0319|consen 315 IVKQIVGYN--DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC-Q-IIPGHTEAVLS---------------LD--- 372 (775)
T ss_pred EehhhcCCc--hhheeeeecCCccceEEEEeCCCceEEEecCCCce-E-EEeCchhheee---------------ee---
Confidence 888776543 37888876 56789999999999999998877622 2 66666665431 11
Q ss_pred cccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCC-
Q 001178 701 SKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG- 779 (1131)
Q Consensus 701 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g- 779 (1131)
....+..+++++.|.++++|.+++.. .....+....+|.+.|.+++++..+
T Consensus 373 ------------------------~~~~g~llat~sKD~svilWr~~~~~----~~~~~~a~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 373 ------------------------VWSSGDLLATGSKDKSVILWRLNNNC----SKSLCVAQANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred ------------------------ecccCcEEEEecCCceEEEEEecCCc----chhhhhhhhcccccccceeeecccCc
Confidence 11234578999999999999995422 2233334446799999999998765
Q ss_pred ceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEE
Q 001178 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSL 858 (1131)
Q Consensus 780 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~v 858 (1131)
..+++++.|+++++|++...+...... + +........|...|.|++++|+.+++|+|+ |.+.+|
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~--------~-------~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPI--------V-------LTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccc--------e-------ehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 467788889999999987632221100 0 000011226999999999999999999999 999999
Q ss_pred EECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCC
Q 001178 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD 938 (1131)
Q Consensus 859 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 938 (1131)
|+++.+....++.+|...|.++.|+| ..+++|++|.|++|+||.+.+..|+.++.||...|..+.|-.+|+.|+|++.|
T Consensus 490 W~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 490 WDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred ecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC
Confidence 99999999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCC
Q 001178 939 AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSK 995 (1131)
Q Consensus 939 g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~ 995 (1131)
|-+++|+++++++... .+.| ...+.+++.++.+.++++| .|+.|.+|.-.+
T Consensus 569 GliKlWnikt~eC~~t-----lD~H-~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 569 GLIKLWNIKTNECEMT-----LDAH-NDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CcEEEEeccchhhhhh-----hhhc-cceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999999776433 3333 3789999999999988875 699999997544
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-49 Score=407.51 Aligned_cols=567 Identities=14% Similarity=0.212 Sum_probs=439.0
Q ss_pred EEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 001178 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433 (1131)
Q Consensus 354 ~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i 433 (1131)
.-.|.|..+|.+. ...|.+-++++..... ++..|...++-..|||.|-|+|+|...|+|
T Consensus 25 g~dpkgd~ilY~n--Gksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~v 83 (603)
T KOG0318|consen 25 GGDPKGDNILYTN--GKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGKV 83 (603)
T ss_pred ccCCCCCeEEEeC--CCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCcE
Confidence 3356677777765 4478888888765433 588999999999999999999999999999
Q ss_pred EEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc--CCC--cEEEEeCCCceeEEecCCccCeEEEeecccC
Q 001178 434 HLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG--DDK--LIRVWDLSGRKLFQFEGHEAPVYSVCPHQKE 509 (1131)
Q Consensus 434 ~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s--~d~--~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~ 509 (1131)
+|||....+.+ ...+++.-.++|.+++|+.|+++ ++..+ .++ .+.+|| +|..+-.+.||...|+++.|-|+.
T Consensus 84 RIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D-SG~SvGei~GhSr~ins~~~KpsR 159 (603)
T KOG0318|consen 84 RIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD-SGNSVGEITGHSRRINSVDFKPSR 159 (603)
T ss_pred EEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec-CCCccceeeccceeEeeeeccCCC
Confidence 99999774433 33467778899999999999995 44443 333 455666 677788999999999999998765
Q ss_pred CccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEe---cc
Q 001178 510 NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI---GF 586 (1131)
Q Consensus 510 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~---~~ 586 (1131)
. -.+++|++|+.|.+|+-...+-...+..|..-|+++.|+|||.++++++. |+++++||-.+|+.+..+. +|
T Consensus 160 P-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aH 234 (603)
T KOG0318|consen 160 P-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAH 234 (603)
T ss_pred c-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCc
Confidence 4 57999999999999976555555667778889999999999999999997 9999999999999999987 55
Q ss_pred cCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCC-CCcceEEEcCCCCEEEEEECCCcEEEEecCCCc
Q 001178 587 RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL-PSLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 587 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 665 (1131)
.+ .|.+++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. ...|++.+.+|.|.+++..++.
T Consensus 235 kG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 235 KG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred cc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC
Confidence 55 8999999999999999999999999999999999988765431 122344454 4578899999999999887662
Q ss_pred hhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCccee
Q 001178 666 RALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWE 745 (1131)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~ 745 (1131)
..+.+
T Consensus 312 -~~~~i-------------------------------------------------------------------------- 316 (603)
T KOG0318|consen 312 -VLKVI-------------------------------------------------------------------------- 316 (603)
T ss_pred -hhhee--------------------------------------------------------------------------
Confidence 22222
Q ss_pred eecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccc
Q 001178 746 LTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMT 825 (1131)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 825 (1131)
.+|...|+++..+++++++++++-||.|.-|+...+...+-
T Consensus 317 ------------------~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~--------------------- 357 (603)
T KOG0318|consen 317 ------------------SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL--------------------- 357 (603)
T ss_pred ------------------cccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc---------------------
Confidence 34888999999999999999999999999998765433211
Q ss_pred cCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEE--EeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001178 826 NDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1131)
Q Consensus 826 ~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd 903 (1131)
....|...|.+++.+..+.++.++-|.++++.++.....-.. ++. .....+++..+ ++.+++..+.++ |.+..
T Consensus 358 --~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~~~-iv~l~ 432 (603)
T KOG0318|consen 358 --AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACISD-IVLLQ 432 (603)
T ss_pred --ccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEecCc-EEEEe
Confidence 123689999999999989888888899999998865433222 222 22334888888 665665555544 44444
Q ss_pred eecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE
Q 001178 904 VRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1131)
Q Consensus 904 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 983 (1131)
-.++ +.... -.-...+++++|++..++.|+.|+.|++|.+...+....... ..+..+++.+++|||+.+||++
T Consensus 433 ~~~~--~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~----~~h~a~iT~vaySpd~~yla~~ 505 (603)
T KOG0318|consen 433 DQTK--VSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL----LEHRAAITDVAYSPDGAYLAAG 505 (603)
T ss_pred cCCc--ceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee----ecccCCceEEEECCCCcEEEEe
Confidence 2222 12222 233578999999999999999999999999998664322221 1233799999999999999998
Q ss_pred e-CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCC
Q 001178 984 H-ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQ 1062 (1131)
Q Consensus 984 ~-d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1131)
+ .+.+.+||+.+.+........ |.+.|.+++|||+.+++|+|+.|-.|.||++..-.....+... |..
T Consensus 506 Da~rkvv~yd~~s~~~~~~~w~F--HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknA---------H~~ 574 (603)
T KOG0318|consen 506 DASRKVVLYDVASREVKTNRWAF--HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNA---------HLG 574 (603)
T ss_pred ccCCcEEEEEcccCceecceeee--eeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccc---------ccc
Confidence 7 789999999988774443332 3899999999999999999999999999999876655444432 344
Q ss_pred ccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1063 TVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1063 ~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
.|+. +.|. ++..+++.|.|.+|++|.+.
T Consensus 575 gVn~--v~wl--de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 575 GVNS--VAWL--DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred Ccee--EEEe--cCceEEeccCcceeEEeccc
Confidence 4554 5553 56899999999999999874
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-49 Score=422.55 Aligned_cols=582 Identities=16% Similarity=0.291 Sum_probs=459.6
Q ss_pred EEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCC
Q 001178 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1131)
Q Consensus 352 ~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~ 431 (1131)
-+.|++||.. +++ ...+.|.++|+.+++-.. ..-.+...|.+++.||+|.+|++....|
T Consensus 19 nl~ft~dG~s-viS-PvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~g 77 (893)
T KOG0291|consen 19 NLVFTKDGNS-VIS-PVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDERG 77 (893)
T ss_pred cEEECCCCCE-EEe-ccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCCC
Confidence 4789999986 443 346799999998765432 1225677899999999999999999999
Q ss_pred eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCc---------eeEEecCCccCeEE
Q 001178 432 LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR---------KLFQFEGHEAPVYS 502 (1131)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~---------~~~~~~~h~~~v~~ 502 (1131)
...+-++.....+. .+ .-..+|.++.|||||+ +++.|. .+.+.||...+. ..+++.+|-..|.+
T Consensus 78 ~~~lvs~~~r~Vlh---~f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~s 150 (893)
T KOG0291|consen 78 RALLVSLLSRSVLH---RF-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITS 150 (893)
T ss_pred cEEEEecccceeeE---EE-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeE
Confidence 99998887754332 12 2356899999999999 455444 568999993322 23566799999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCce--eEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC----
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE---- 576 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~---- 576 (1131)
+.|+ .|.++|++|+.|-.+++|.++..+. ...+.+|...|.+..|..+...+++.+. +|.+.+|....
T Consensus 151 i~Ws--~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvsk----dG~l~~W~~~~~P~~ 224 (893)
T KOG0291|consen 151 IDWS--DDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSK----DGALFVWTCDLRPPE 224 (893)
T ss_pred EEec--cCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEec----CceEEEEEecCCCcc
Confidence 9995 5668999999999999999988776 5577889999999999999999999987 99999997651
Q ss_pred -------------------Cee---------e-EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEe
Q 001178 577 -------------------GAL---------K-RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1131)
Q Consensus 577 -------------------~~~---------~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1131)
++. . +.+.......+++.+|++.-+.|++|-..|...+|.+....+++.+.
T Consensus 225 ~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LS 304 (893)
T KOG0291|consen 225 LDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLS 304 (893)
T ss_pred cccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEee
Confidence 111 0 11112222478899999999999999999999999999999999998
Q ss_pred ccCCCCCcceEEEcCCCCEEEEEECC-CcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccc
Q 001178 628 AEGGLPSLPRLRFNKEGNLLVVTTAD-QGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERV 706 (1131)
Q Consensus 628 ~~~~~~~i~~v~~sp~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 706 (1131)
...+ +|..++|+..|..++.|+.. |.+.||+.....-.++
T Consensus 305 is~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK------------------------------------- 345 (893)
T KOG0291|consen 305 ISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK------------------------------------- 345 (893)
T ss_pred cccc--eeeEEEecccCCEEEEcCCccceEEEEEeeccceeee-------------------------------------
Confidence 7655 79999999999999999875 8999999866521110
Q ss_pred cCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEee
Q 001178 707 DRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALW 786 (1131)
Q Consensus 707 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 786 (1131)
. ++|...+.+++++|||..+++|+
T Consensus 346 -------------------------------------------------------Q-QgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 346 -------------------------------------------------------Q-QGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred -------------------------------------------------------c-cccccceeeEEECCCCcEEEecc
Confidence 0 44889999999999999999999
Q ss_pred ecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCce
Q 001178 787 SNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFK 865 (1131)
Q Consensus 787 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~ 865 (1131)
+||.|++||.. .|.+... + ..|...|+.+.|+..|+.+++++ ||+|+.||+....
T Consensus 370 eDgKVKvWn~~----------------------SgfC~vT-F-teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 370 EDGKVKVWNTQ----------------------SGFCFVT-F-TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred CCCcEEEEecc----------------------CceEEEE-e-ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 99999888753 3333332 1 26999999999999999999999 9999999999999
Q ss_pred eEEEEeCCCC-CeeEEEEeCCCCcEEEEEeCCC-cEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEE
Q 001178 866 VMTTFMSPPP-ASTFLAFHPQDNNIIAIGMEDS-TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIF 943 (1131)
Q Consensus 866 ~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg-~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~l 943 (1131)
..+++..+.. .-.|++..| .|.++..|+.|. .|++|++++|+++..+.||.+||.+++|+|++..|+|++.|.+|++
T Consensus 426 NfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 426 NFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred eeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence 9999986543 467888888 899999998886 5999999999999999999999999999999999999999999999
Q ss_pred EEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecC-----------------
Q 001178 944 WNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQ----------------- 1005 (1131)
Q Consensus 944 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~----------------- 1005 (1131)
||+-..... ...+.. ...+..++|+|||+-|++++ ||.|.+||+..+.....+.+.
T Consensus 505 W~if~s~~~-vEtl~i-----~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 505 WDIFSSSGT-VETLEI-----RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred EEeeccCce-eeeEee-----ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 998764211 111211 16789999999999999865 999999999876655333221
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccc--------------------------------
Q 001178 1006 DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYM-------------------------------- 1053 (1131)
Q Consensus 1006 ~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------------------------- 1053 (1131)
.......+.+++|+||++|++|++.+.|++|++.++-++.++......
T Consensus 579 sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~ 658 (893)
T KOG0291|consen 579 SAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEG 658 (893)
T ss_pred cccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccc
Confidence 112468899999999999999999999999999998776666532111
Q ss_pred ------cCC------CCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1054 ------SQA------SPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1054 ------~~~------~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
|+. +..-...|.+..|.|+| .++-++.++..| |.||.+.+
T Consensus 659 ~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 659 RIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred cccccCCccccCCccccccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCC
Confidence 000 00001257778999999 568999999998 77887744
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.1e-49 Score=403.79 Aligned_cols=534 Identities=16% Similarity=0.230 Sum_probs=424.2
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
.-+|...++-..|||.|- ++|+|...|+|||||....+.+...+| ..-.++|..++|++|++
T Consensus 55 YtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef-----------------~v~aG~I~Di~Wd~ds~ 116 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEF-----------------QVLAGPIKDISWDFDSK 116 (603)
T ss_pred eccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeee-----------------eecccccccceeCCCCc
Confidence 346999999999999997 599999999999999987665544333 34578999999999999
Q ss_pred EEEEEeCC----CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCc
Q 001178 423 FIGVAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE 497 (1131)
Q Consensus 423 ~las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~ 497 (1131)
+|++.+.. |.+.+|| +|..+. ++.||...|++++|-|.... .++||++|++|.+|+ ..-+.-.+++.|.
T Consensus 117 RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~Hs 190 (603)
T KOG0318|consen 117 RIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHS 190 (603)
T ss_pred EEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccccc
Confidence 99877543 3455566 454444 68999999999999998876 899999999999999 7777778888999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec---CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
..|.++.|+| ||..+++++.||.|.+||-.+++....+. .|.+.|.+++|+||++.+++++. |.++++||+
T Consensus 191 kFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWdV 264 (603)
T KOG0318|consen 191 KFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWDV 264 (603)
T ss_pred cceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEEe
Confidence 9999999965 57899999999999999999999988887 78889999999999999999987 899999999
Q ss_pred CCCeeeEEEecccC---CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEE
Q 001178 575 SEGALKRTYIGFRK---KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT 651 (1131)
Q Consensus 575 ~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~ 651 (1131)
.+.++++++..... ..+. +-|. +..|++.+.+|.|.+++......+..+.+|.. .|++++.+|++.++++|+
T Consensus 265 s~~slv~t~~~~~~v~dqqvG-~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 265 STNSLVSTWPMGSTVEDQQVG-CLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYSGS 339 (603)
T ss_pred eccceEEEeecCCchhceEEE-EEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc--ceeEEEEcCCCCEEEeec
Confidence 99999998875432 1233 3343 67899999999999999999998888876654 899999999999999999
Q ss_pred CCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCc
Q 001178 652 ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKP 731 (1131)
Q Consensus 652 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 731 (1131)
.||.|.-|+...+..... .
T Consensus 340 yDG~I~~W~~~~g~~~~~---------------------------~---------------------------------- 358 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRL---------------------------A---------------------------------- 358 (603)
T ss_pred cCceEEEEecCCcccccc---------------------------c----------------------------------
Confidence 999999999877621000 0
Q ss_pred eeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceee
Q 001178 732 RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAV 811 (1131)
Q Consensus 732 ~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 811 (1131)
...|...|.+++.+..+. +++.+.|.++++.++..........
T Consensus 359 -------------------------------g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~----- 401 (603)
T KOG0318|consen 359 -------------------------------GKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEV----- 401 (603)
T ss_pred -------------------------------cccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccce-----
Confidence 023788888888876665 6677777788887654322211110
Q ss_pred eceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEE
Q 001178 812 APQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIA 891 (1131)
Q Consensus 812 ~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la 891 (1131)
+ .......+++..+|+.+++.+....|.+..-.+. +.+.. ..-...+++++| ++..+|
T Consensus 402 ----------------~--~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~va 459 (603)
T KOG0318|consen 402 ----------------V--KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVA 459 (603)
T ss_pred ----------------e--ecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEE
Confidence 0 1233344899999998888888666666652222 22222 234578999999 999999
Q ss_pred EEeCCCcEEEEEeeccee--EEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCce
Q 001178 892 IGMEDSTIQIYNVRVDEV--KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGET 969 (1131)
Q Consensus 892 ~g~~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~ 969 (1131)
+|+.||.|+||.+..+.+ ...+..|.++|++++||||+.+||++...+.+.+||+.+.+..... ..-|...|.
T Consensus 460 VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~-----w~FHtakI~ 534 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR-----WAFHTAKIN 534 (603)
T ss_pred EecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce-----eeeeeeeEE
Confidence 999999999999987653 3457789999999999999999999999999999999997652221 122337899
Q ss_pred EEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 970 RVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 970 ~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
+++|+|+..++|+|+ |..|.||+++.......+. ..|...|+.+.|- |...+++.+.|..|++|.+.
T Consensus 535 ~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik--nAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 535 CVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK--NAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEeCCCceEEEeccccceEEEEEccChhhheEec--cccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 999999999999987 9999999998755443333 3346679999998 56678888999999999864
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-47 Score=411.37 Aligned_cols=550 Identities=16% Similarity=0.249 Sum_probs=431.5
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
+++...|++++.||+|. +|++-...|...+-++.....++.. ..+.+|.|+.|||||++
T Consensus 52 ~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f--------------------~fk~~v~~i~fSPng~~ 110 (893)
T KOG0291|consen 52 LETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRF--------------------NFKRGVGAIKFSPNGKF 110 (893)
T ss_pred eecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEE--------------------eecCccceEEECCCCcE
Confidence 46889999999999997 5666677888888888776655432 22568999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCc-----cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-C--CCceeEEecC
Q 001178 424 IGVAFTKHLIHLYTYQGSND-----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L--SGRKLFQFEG 495 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~-----~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~--~~~~~~~~~~ 495 (1131)
+|.|.. +.+.||....... .....++.+|...|.++.|+.|.+ +|++||.|.++++|+ . .+-....+.+
T Consensus 111 fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~g 187 (893)
T KOG0291|consen 111 FAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNG 187 (893)
T ss_pred EEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEeccC
Confidence 998864 5899998765322 234456789999999999999999 899999999999999 2 3333677889
Q ss_pred CccCeEEEeecccCCccEEEEEecCCeEEEEeCCC-----------------------Cce-----------eEEecCCC
Q 001178 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-----------------------VGS-----------RVDYDAPG 541 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-----------------------~~~-----------~~~~~~~~ 541 (1131)
|.+.|.+..|. .+...+++.+.||.+.+|.... ++. ..-+....
T Consensus 188 Hkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~ 265 (893)
T KOG0291|consen 188 HKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNS 265 (893)
T ss_pred CCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccc
Confidence 99999988774 4446799999999999997761 111 01122233
Q ss_pred ceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC-CcEEEEEcCCC
Q 001178 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED-NQIKFWDMDNV 620 (1131)
Q Consensus 542 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~ 620 (1131)
..+++.+|++..+.|+++-. .|...+|.+....+++.+.-... .|..++|+..|.+++.|+.. |.+.||+..+.
T Consensus 266 ~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred cceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 57899999999999999876 88899999999999998876444 89999999999999998764 89999999887
Q ss_pred eEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccc
Q 001178 621 NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVL 700 (1131)
Q Consensus 621 ~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 700 (1131)
.-+...+ +|...+++++++|||+++++|++||.|+|||...+. ++.
T Consensus 341 sYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~v------------------------------- 386 (893)
T KOG0291|consen 341 SYVLKQQ--GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-CFV------------------------------- 386 (893)
T ss_pred ceeeecc--ccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-EEE-------------------------------
Confidence 6665555 455589999999999999999999999999987761 111
Q ss_pred cccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCc
Q 001178 701 SKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGI 780 (1131)
Q Consensus 701 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 780 (1131)
++ ..|...|+.+.|+..|.
T Consensus 387 ----------------------------------------------------------TF---teHts~Vt~v~f~~~g~ 405 (893)
T KOG0291|consen 387 ----------------------------------------------------------TF---TEHTSGVTAVQFTARGN 405 (893)
T ss_pred ----------------------------------------------------------Ee---ccCCCceEEEEEEecCC
Confidence 11 23889999999999999
Q ss_pred eEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-C-CeEEE
Q 001178 781 GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-G-GKVSL 858 (1131)
Q Consensus 781 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-d-g~i~v 858 (1131)
.+++.+-||+++.||+..... .+ .+.........|++..|.|..++.|+ | =.|.|
T Consensus 406 ~llssSLDGtVRAwDlkRYrN----------------------fR-Tft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 406 VLLSSSLDGTVRAWDLKRYRN----------------------FR-TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV 462 (893)
T ss_pred EEEEeecCCeEEeeeecccce----------------------ee-eecCCCceeeeEEEEcCCCCEEEeeccceEEEEE
Confidence 999999999999999864211 00 01112345667899999999999998 5 45999
Q ss_pred EECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce-eEEeecccccCeeEEEEccCCCEEEEEeC
Q 001178 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE-VKTKLKGHQKHITGLAFSTNLNILVSSGS 937 (1131)
Q Consensus 859 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l~~s~dg~~l~s~~~ 937 (1131)
|++++|+.+-.+.+|.++|.+++|+| .+..||+|++|.+|++||+-... .+..++ +...+.+++|+|||+.|+++.-
T Consensus 463 WS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 463 WSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATL 540 (893)
T ss_pred EEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEe
Confidence 99999999999999999999999999 89999999999999999987553 333444 6778999999999999999999
Q ss_pred CCcEEEEEcCCCceeeee--------------eeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCcccceee
Q 001178 938 DAQLIFWNTDTWEKRKSI--------------AIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQW 1002 (1131)
Q Consensus 938 Dg~v~lwd~~~~~~~~~~--------------~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~~~~~~~ 1002 (1131)
||.|.+||++.+...... .+...........+.+++|+||.++++| ....|.+|++.++-.++.+
T Consensus 541 dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 541 DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeE
Confidence 999999999875543211 1111111223578899999999998885 5788999999887666554
Q ss_pred ecCCCC-----------------------------------------------------CCCeEEEEEccCCCEEEEEec
Q 001178 1003 VPQDVL-----------------------------------------------------SSPISSAAYSCNSQLIYATFT 1029 (1131)
Q Consensus 1003 ~~~~~~-----------------------------------------------------~~~v~~i~~s~dg~~l~s~~~ 1029 (1131)
.....+ .-.|+++.|||.|+-+|.++.
T Consensus 621 qiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatT 700 (893)
T KOG0291|consen 621 QISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATT 700 (893)
T ss_pred EeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecc
Confidence 322110 124789999999999999886
Q ss_pred CCcEEEEECCCCceee
Q 001178 1030 DGSIGVFDADSLRLRC 1045 (1131)
Q Consensus 1030 dg~i~vwd~~~~~~~~ 1045 (1131)
.| +.||.+++.-+..
T Consensus 701 EG-l~IYsld~~~~FD 715 (893)
T KOG0291|consen 701 EG-LLIYSLDTTILFD 715 (893)
T ss_pred cc-eEEEecCCceEEc
Confidence 65 6788887655433
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7e-48 Score=412.70 Aligned_cols=525 Identities=14% Similarity=0.279 Sum_probs=412.3
Q ss_pred cccCCCCCcccccCCCcccceeee-ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeeccccccc
Q 001178 320 ATYPVPSQQATWSLDDLPRAVACT-MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSM 398 (1131)
Q Consensus 320 ~~~s~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 398 (1131)
++.|+.-.+.+|..........-. .....+|+|+.-+||.- +||+|..||.|+||+..++....
T Consensus 37 va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------- 101 (888)
T KOG0306|consen 37 VAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------- 101 (888)
T ss_pred EEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee--------------
Confidence 555666667777776542222222 23456999999999885 79999999999999999876543
Q ss_pred ceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC
Q 001178 399 MLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1131)
Q Consensus 399 ~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 478 (1131)
++.||...|+++.|+..|.+||+|+.|+.|.+||+-....+ ..+.||...|+..-|..+.+ +++++|.|+
T Consensus 102 -----tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl---~rL~GHkd~iT~~~F~~~~~--~lvS~sKDs 171 (888)
T KOG0306|consen 102 -----TFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL---FRLRGHKDSITQALFLNGDS--FLVSVSKDS 171 (888)
T ss_pred -----eecccccceEEEEEcccCceEeecCCCccEEEEEeccceee---EEeecchHHHhHHhccCCCe--EEEEeccCc
Confidence 57899999999999999999999999999999999875433 36899999999999998777 899999999
Q ss_pred cEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee------E-------EecCC----
Q 001178 479 LIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR------V-------DYDAP---- 540 (1131)
Q Consensus 479 ~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~------~-------~~~~~---- 540 (1131)
.|++|| .+..+..+...|.+.++++++.+ +.+++++.|+.+++|++...... . .....
T Consensus 172 ~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~ 247 (888)
T KOG0306|consen 172 MIKFWDLETQHCFETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGRE 247 (888)
T ss_pred eEEEEecccceeeeEEecccceEEEEEEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCce
Confidence 999999 88889999999999999999864 58999999999999998210000 0 00000
Q ss_pred ------------------------------------------------------------------------CceEEEEE
Q 001178 541 ------------------------------------------------------------------------GLWCTTML 548 (1131)
Q Consensus 541 ------------------------------------------------------------------------~~~v~~~~ 548 (1131)
...+.++.
T Consensus 248 i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~d 327 (888)
T KOG0306|consen 248 INLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFD 327 (888)
T ss_pred eEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEE
Confidence 01234444
Q ss_pred EccCCCE---EEEEeecCCCCceEEEEeCCC-Cee--------eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 001178 549 YSADGSR---LFSCGTSKEGDSHLVEWNESE-GAL--------KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616 (1131)
Q Consensus 549 ~s~~g~~---l~~~~~~~~~~~~i~iwd~~~-~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 616 (1131)
+.|.+.. |+.-. ++.+..|.+.. +.. -..+.+|.. .|.+++++.+...+++| ..+.|++|+
T Consensus 328 v~~~~~~~~~lv~l~-----nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sg-a~~SikiWn 400 (888)
T KOG0306|consen 328 VTPSGGTENTLVLLA-----NNTVEWYSLENSGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASG-AGESIKIWN 400 (888)
T ss_pred EEecCCcceeEEEee-----cCceEEEEeccCCCCCccccccceeeeccchh-heeEEEeecCceeeeec-CCCcEEEEE
Confidence 4443321 22211 44555555543 111 123455555 89999999876555555 457899999
Q ss_pred cCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecc
Q 001178 617 MDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTI 696 (1131)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1131)
..+.+++.++... -+.+..|-|.++++++|...|.+.+||+... .....+
T Consensus 401 ~~t~kciRTi~~~----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti------------------------- 450 (888)
T KOG0306|consen 401 RDTLKCIRTITCG----YILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETI------------------------- 450 (888)
T ss_pred ccCcceeEEeccc----cEEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhh-------------------------
Confidence 9999999998754 5788899999999999999999999998765 222211
Q ss_pred cccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEee
Q 001178 697 TPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT 776 (1131)
Q Consensus 697 sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 776 (1131)
..|.+.|.+++.+
T Consensus 451 -------------------------------------------------------------------~AHdgaIWsi~~~ 463 (888)
T KOG0306|consen 451 -------------------------------------------------------------------RAHDGAIWSISLS 463 (888)
T ss_pred -------------------------------------------------------------------hccccceeeeeec
Confidence 2388999999999
Q ss_pred cCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCe
Q 001178 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGK 855 (1131)
Q Consensus 777 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~ 855 (1131)
||+..+++++.|.++++|++......| |.. -++..+...+.+ ...+.|.|+.+||||++||++- |++
T Consensus 464 pD~~g~vT~saDktVkfWdf~l~~~~~-gt~-----~k~lsl~~~rtL------el~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 464 PDNKGFVTGSADKTVKFWDFKLVVSVP-GTQ-----KKVLSLKHTRTL------ELEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred CCCCceEEecCCcEEEEEeEEEEeccC-ccc-----ceeeeeccceEE------eccccEEEEEEcCCCcEEEEEeccCe
Confidence 999999999999999999986533211 110 011111111111 2578899999999999999998 999
Q ss_pred EEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEE
Q 001178 856 VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS 935 (1131)
Q Consensus 856 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~ 935 (1131)
|+||-+++.+....+-+|.-+|.|+..|| |+++++||+.|.+|++|-++-|.|...+-+|.+.|.++.|-|+...+.++
T Consensus 532 VkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~ 610 (888)
T KOG0306|consen 532 VKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTC 610 (888)
T ss_pred EEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEe
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEE
Q 001178 936 GSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSA 1015 (1131)
Q Consensus 936 ~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i 1015 (1131)
|.|+.|+-||-+. .++++.+.+| ...|+++
T Consensus 611 gKD~kvKqWDg~k-----------------------------------------------Fe~iq~L~~H---~~ev~cL 640 (888)
T KOG0306|consen 611 GKDGKVKQWDGEK-----------------------------------------------FEEIQKLDGH---HSEVWCL 640 (888)
T ss_pred cCcceEEeechhh-----------------------------------------------hhhheeeccc---hheeeee
Confidence 9999999998766 3445555555 6799999
Q ss_pred EEccCCCEEEEEecCCcEEEEECCC
Q 001178 1016 AYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 1016 ~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
+.+|+|.++++++.|.+|++|....
T Consensus 641 av~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 641 AVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999999999998655
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.3e-50 Score=394.25 Aligned_cols=326 Identities=24% Similarity=0.379 Sum_probs=289.3
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
.-+|.+.|.|++|+|+|++ ||+|+.|.++++||+.+..++. +.++|...|.|++|||||+
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~KgH~~WVlcvawsPDgk 170 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKGHKNWVLCVAWSPDGK 170 (480)
T ss_pred cCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecCCccEEEEEEECCCcc
Confidence 3469999999999999985 9999999999999999987765 6889999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEec-----CCCceEEEEEcCCCcEEEEe-CCCceeEEecCC
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY-----PNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~-----d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h 496 (1131)
.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||+|+||| ..+.++..+.+|
T Consensus 171 ~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsgH 246 (480)
T KOG0271|consen 171 KIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSGH 246 (480)
T ss_pred hhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEeccC
Confidence 999999999999999999987653 6899999999999976 455 799999999999999 788899999999
Q ss_pred ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc-----------CC------------
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-----------DG------------ 553 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-----------~g------------ 553 (1131)
+.+|+|++|-. ..++++|+.|++|++|+...+.....+.+|.++|+.++.+. .+
T Consensus 247 T~~VTCvrwGG---~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 247 TASVTCVRWGG---EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred ccceEEEEEcC---CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence 99999999842 25999999999999999999888889999999999998872 23
Q ss_pred -------------CEEEEEeecCCCCceEEEEeCCC-CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 554 -------------SRLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 554 -------------~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
..|++++. |.++.+|+... .+++..+.+|.. .|+.+.|+||+.++++++.|..|++|+..+
T Consensus 324 Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred HHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCC
Confidence 34889886 89999999754 457778888777 899999999999999999999999999999
Q ss_pred CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccc
Q 001178 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPV 699 (1131)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 699 (1131)
|+.+.++.+|- ..|+.++|+.|.++|++|+.|.++++|++.+. +...
T Consensus 399 Gk~lasfRGHv--~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~------------------------------ 445 (480)
T KOG0271|consen 399 GKFLASFRGHV--AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQ------------------------------ 445 (480)
T ss_pred cchhhhhhhcc--ceeEEEEeccCccEEEEcCCCceEEEEEeeee-eecc------------------------------
Confidence 99999988654 48999999999999999999999999998765 1111
Q ss_pred ccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCC
Q 001178 700 LSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779 (1131)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 779 (1131)
.+ ++|..+|.++.++|||
T Consensus 446 -----------------------------------------------------------DL---pGh~DEVf~vDwspDG 463 (480)
T KOG0271|consen 446 -----------------------------------------------------------DL---PGHADEVFAVDWSPDG 463 (480)
T ss_pred -----------------------------------------------------------cC---CCCCceEEEEEecCCC
Confidence 11 3388999999999999
Q ss_pred ceEEEeeecceeeEEe
Q 001178 780 IGILALWSNGVQKLWK 795 (1131)
Q Consensus 780 ~~l~~~~~dg~i~iw~ 795 (1131)
..++.++.|..+++|.
T Consensus 464 ~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 464 QRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeecCCCceEEEeec
Confidence 9999999999999984
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-49 Score=390.65 Aligned_cols=367 Identities=21% Similarity=0.317 Sum_probs=301.1
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.||.++|.|++|+|+|+.||+|+.|.++++||+.+.... ++..+|...|.|++|+|||+ .|++|+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---~t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---FTCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc---eeecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 47799999999999999999999999999999999996544 47899999999999999999 79999999999999
Q ss_pred e-CCCcee-EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEee
Q 001178 484 D-LSGRKL-FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 484 d-~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
| .+|+++ ..+.+|...|++++|.|-. ..|..++|++++.
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~sk 225 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSSK 225 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceecccC
Confidence 9 777665 6799999999999996521 3455667777765
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1131)
||.++|||...+.++..+.+|.. .|+|++|..+ .++++|+.|++|++|+...|.+...+..|.+ .|+.++.+
T Consensus 226 ----Dg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lals 297 (480)
T KOG0271|consen 226 ----DGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALS 297 (480)
T ss_pred ----CCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeecc
Confidence 88899999888999999999887 8999999754 5899999999999999999999999998888 89999988
Q ss_pred CCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCC
Q 001178 642 KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGA 721 (1131)
Q Consensus 642 p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~ 721 (1131)
.+- .|-+|..|.+=+-....+ ....+.++.... ..+
T Consensus 298 Tdy-~LRtgaf~~t~~~~~~~s-e~~~~Al~rY~~-------------------~~~----------------------- 333 (480)
T KOG0271|consen 298 TDY-VLRTGAFDHTGRKPKSFS-EEQKKALERYEA-------------------VLK----------------------- 333 (480)
T ss_pred chh-hhhccccccccccCCChH-HHHHHHHHHHHH-------------------hhc-----------------------
Confidence 652 344444443222111111 011111211110 000
Q ss_pred CccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCC
Q 001178 722 DSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ 801 (1131)
Q Consensus 722 ~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 801 (1131)
..+..++++++|.++.+|+......
T Consensus 334 -------------------------------------------------------~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 334 -------------------------------------------------------DSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred -------------------------------------------------------cCcceeEEecCCceEEEeccccccc
Confidence 1245678888888888776432111
Q ss_pred CCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEE
Q 001178 802 NPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFL 880 (1131)
Q Consensus 802 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l 880 (1131)
.+.. +. +|..-|..+.||||++++|+++ |..|++||..+|+.+.+|.+|-..|..+
T Consensus 359 ---------------------pi~r-mt-gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqv 415 (480)
T KOG0271|consen 359 ---------------------PITR-MT-GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQV 415 (480)
T ss_pred ---------------------chhh-hh-chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEE
Confidence 1111 11 6999999999999999999999 9999999999999999999999999999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEE
Q 001178 881 AFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945 (1131)
Q Consensus 881 ~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd 945 (1131)
+|+. |.++|++|+.|.++++|++.+.++...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 416 awsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 416 AWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred Eecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999 999999999999999999999999999999999999999999999999999999999995
No 12
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-46 Score=401.95 Aligned_cols=581 Identities=15% Similarity=0.242 Sum_probs=435.8
Q ss_pred cEEEEEEe-cCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 349 SVVSMDFH-PFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 349 ~V~~~~fs-pdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
.+..+..+ ..|++ +|+ +..-.|.+||+.+|+..... +.......|+|++-+||.-+||+|
T Consensus 23 N~~~~~~~~~~Gr~-va~-~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVG 83 (888)
T KOG0306|consen 23 NINFVVKRSGKGRA-VAV-SALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVG 83 (888)
T ss_pred ceeEEEeecCCCcE-EEE-eccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEE
Confidence 34444333 35775 333 33458999999999655421 122334689999999999999999
Q ss_pred eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeec
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPH 506 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~ 506 (1131)
..||.|+||+..++... .++.||...|+.+.|...|. .|+|||.|+.|.+|| ....-+..++||...|+..-|.
T Consensus 84 YaDGsVqif~~~s~~~~---~tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 84 YADGSVQIFSLESEEIL---ITFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred ecCceEEeeccCCCcee---eeecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 99999999999987433 47899999999999999999 899999999999999 7777789999999999988775
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC---------
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG--------- 577 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--------- 577 (1131)
. +..++++.+.|+.|++||+++..+..+...|...+.++++.+ +.+++++. ++.+.+|++...
T Consensus 159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~ 230 (888)
T KOG0306|consen 159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRY 230 (888)
T ss_pred C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeeccccccccccc
Confidence 4 447999999999999999999999999999999999999988 67777775 888999998210
Q ss_pred ---eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEE--------Eecc-----------------
Q 001178 578 ---ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTS--------TEAE----------------- 629 (1131)
Q Consensus 578 ---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~~~~----------------- 629 (1131)
+...++.....+..-.+...+++.++++-+.|..+.+|.+.+.+.+.. .+.+
T Consensus 231 ~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~ 310 (888)
T KOG0306|consen 231 ISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDE 310 (888)
T ss_pred ceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHH
Confidence 011112111111233355667778899999999999998865321100 0000
Q ss_pred -------CCCCCcceEEEcCCCCE--EEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccc
Q 001178 630 -------GGLPSLPRLRFNKEGNL--LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVL 700 (1131)
Q Consensus 630 -------~~~~~i~~v~~sp~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 700 (1131)
.....+.++.+-|.++. .++.-.++++..|.+... .. .+|.
T Consensus 311 i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s-~~----------------------------~~p~- 360 (888)
T KOG0306|consen 311 IKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENS-GK----------------------------TSPE- 360 (888)
T ss_pred HHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccC-CC----------------------------CCcc-
Confidence 00113455666554321 122244556666554331 00 0000
Q ss_pred cccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCc
Q 001178 701 SKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGI 780 (1131)
Q Consensus 701 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 780 (1131)
+.....+.+ .+|...|.++++|.+..
T Consensus 361 ---------------------------------------------------~~~~~~i~~---~GHR~dVRsl~vS~d~~ 386 (888)
T KOG0306|consen 361 ---------------------------------------------------ADRTSNIEI---GGHRSDVRSLCVSSDSI 386 (888)
T ss_pred ---------------------------------------------------ccccceeee---ccchhheeEEEeecCce
Confidence 001111222 34999999999998887
Q ss_pred eEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEE
Q 001178 781 GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLF 859 (1131)
Q Consensus 781 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vw 859 (1131)
.+++++ ++.+++|+.. +.++++. -....+.+..|-|.+++++.|. .|.+.+|
T Consensus 387 ~~~Sga-~~SikiWn~~----------------------t~kciRT----i~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vf 439 (888)
T KOG0306|consen 387 LLASGA-GESIKIWNRD----------------------TLKCIRT----ITCGYILASKFVPGDRYIVLGTKNGELQVF 439 (888)
T ss_pred eeeecC-CCcEEEEEcc----------------------CcceeEE----eccccEEEEEecCCCceEEEeccCCceEEE
Confidence 665554 4577777643 3333332 1244788999999999999999 7999999
Q ss_pred ECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec-----ceeEEeec-------ccccCeeEEEEcc
Q 001178 860 NMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-----DEVKTKLK-------GHQKHITGLAFST 927 (1131)
Q Consensus 860 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~-----~~~~~~~~-------~h~~~V~~l~~s~ 927 (1131)
|+.+...+.+.+.|.+.|..++.+| |+..+++|+.|.+|++||..- +.....+. .-...|.|+.+||
T Consensus 440 dlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 440 DLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred EeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 9999999999999999999999999 899999999999999999752 21111111 1346799999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCC
Q 001178 928 NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQD 1006 (1131)
Q Consensus 928 dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~ 1006 (1131)
||++||.+=-|.+|++|-+++-+ ......+| .-+|.++..|||++++++|+ |..|+||-++-|.|-+.+..|
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlK-----FflsLYGH-kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH- 591 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGH-KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH- 591 (888)
T ss_pred CCcEEEEEeccCeEEEEEeccee-----eeeeeccc-ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc-
Confidence 99999999999999999999833 22233333 37999999999999999975 999999999999999999888
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCC
Q 001178 1007 VLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG 1086 (1131)
Q Consensus 1007 ~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg 1086 (1131)
...|.++.|-|...++++++.|+.|+-||.++.+.+..+.+|+ ..|+++++ +| +|.+++++|.|.
T Consensus 592 --dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~----------~ev~cLav--~~-~G~~vvs~shD~ 656 (888)
T KOG0306|consen 592 --DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHH----------SEVWCLAV--SP-NGSFVVSSSHDK 656 (888)
T ss_pred --cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccch----------heeeeeEE--cC-CCCeEEeccCCc
Confidence 8899999999999999999999999999999999888887644 45665444 56 678999999999
Q ss_pred cEEEEecCC
Q 001178 1087 SVKVIEPSE 1095 (1131)
Q Consensus 1087 ~v~iW~~~~ 1095 (1131)
+|++|.-..
T Consensus 657 sIRlwE~td 665 (888)
T KOG0306|consen 657 SIRLWERTD 665 (888)
T ss_pred eeEeeeccC
Confidence 999999754
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.5e-42 Score=368.20 Aligned_cols=610 Identities=14% Similarity=0.190 Sum_probs=407.6
Q ss_pred EEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe--
Q 001178 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-- 428 (1131)
Q Consensus 351 ~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~-- 428 (1131)
..++.+|-.. ++|. -....|.+||.+..++.+ ++..|..+++|+|||++|+|+|+|-
T Consensus 41 ~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 41 NGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred Cccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccC
Confidence 3455566544 2332 124589999988765433 5778888999999999999999985
Q ss_pred CCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC--CCcEEEEeCCCceeEEecCCccCeEEEeec
Q 001178 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD--DKLIRVWDLSGRKLFQFEGHEAPVYSVCPH 506 (1131)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~ 506 (1131)
....++||++.....+. ++..|...|+|++|+|.++ ++++.+. |-.|.+||........-..-...|..++|
T Consensus 100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~f- 173 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAF- 173 (1080)
T ss_pred CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccccceeEEEEEE-
Confidence 56679999999876443 7889999999999999999 6777664 55677888332222222334567888888
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCceeE---EecCCCceEEEEEE------------ccCCCEEEEEeecCCCCceEEE
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGLWCTTMLY------------SADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~------------s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
+.+|.++++.+ ...|++|.++...... .+.+...-.-.+.+ ..+..+.++. .|.+.-
T Consensus 174 -sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvE 245 (1080)
T KOG1408|consen 174 -SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVE 245 (1080)
T ss_pred -ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceee
Confidence 56778888776 5789999988665222 11111100000110 0111222221 233333
Q ss_pred EeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc----------------------
Q 001178 572 WNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE---------------------- 629 (1131)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------- 629 (1131)
+. +.+++-+...-.....+|++.+ .+++++|+.+|.|++|+..+...+.+++..
T Consensus 246 FS--sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~ 321 (1080)
T KOG1408|consen 246 FS--SRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP 321 (1080)
T ss_pred ec--hhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence 32 2222222211122245566665 579999999999999998775544433211
Q ss_pred CCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCC
Q 001178 630 GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRS 709 (1131)
Q Consensus 630 ~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~ 709 (1131)
...+...++.|++....|.+...|..++|||+.+-.+.-+...
T Consensus 322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s------------------------------------- 364 (1080)
T KOG1408|consen 322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSS------------------------------------- 364 (1080)
T ss_pred ccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceee-------------------------------------
Confidence 1112334688999889999999999999999976532211000
Q ss_pred CCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecc
Q 001178 710 SPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNG 789 (1131)
Q Consensus 710 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 789 (1131)
-......+|++...... .|...- +.-|.+ .++++++|+
T Consensus 365 --------------------------~lyHS~ciW~Ve~~p~n------------v~~~~~---aclp~~-cF~TCSsD~ 402 (1080)
T KOG1408|consen 365 --------------------------MLYHSACIWDVENLPCN------------VHSPTA---ACLPRG-CFTTCSSDG 402 (1080)
T ss_pred --------------------------eeeccceeeeecccccc------------ccCccc---ccCCcc-ceeEecCCC
Confidence 00022345555442210 000000 111112 255666666
Q ss_pred eeeEEeecCCCCCCC--Cccceee---------ec-eeecCCCCcccccC-CCCCCCCCeeEEEecCCCCEEEEEe-CCe
Q 001178 790 VQKLWKWNRTEQNPS--GKATAAV---------AP-QHWQPSNGLLMTND-VPENAEDVVPCVALSKNDSYVMSAG-GGK 855 (1131)
Q Consensus 790 ~i~iw~~~~~~~~~~--~~~~~~~---------~~-~~w~~~~~~~~~~~-~~~~~~~~i~~l~~s~dg~~la~~~-dg~ 855 (1131)
+|++|++........ .++.... +. .+.|...+..-... -.-.....++++++||+|++||+|+ .|+
T Consensus 403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn 482 (1080)
T KOG1408|consen 403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN 482 (1080)
T ss_pred cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc
Confidence 777776655211100 0000000 00 00011100000000 0003567899999999999999999 799
Q ss_pred EEEEECCCceeEEEEeCCCCCeeEEEEeCC--CCcEEEEEeCCCcEEEEEeec-ceeEEeecccccCeeEEEEccCC--C
Q 001178 856 VSLFNMMNFKVMTTFMSPPPASTFLAFHPQ--DNNIIAIGMEDSTIQIYNVRV-DEVKTKLKGHQKHITGLAFSTNL--N 930 (1131)
Q Consensus 856 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~--~~~~la~g~~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~s~dg--~ 930 (1131)
++||++...+....+..|..+|.|+.||.. ..++||+++.|..|.|||+.. ..++.++.+|...|+++.|.-.| .
T Consensus 483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 999999999999999999999999999852 467999999999999999874 46778899999999999998877 7
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCC---CCCceEEEEcCCCcEEEE-EeCCeEEEEeCCCcccceeeecCC
Q 001178 931 ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKL---PVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQD 1006 (1131)
Q Consensus 931 ~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~---~~~v~~v~~s~d~~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~ 1006 (1131)
.++++|.|+.|++--....... ...+.+++ ...+..++..|..+++++ +.|..|+||++.+++..+.|.+.+
T Consensus 563 ~MiscGADksimFr~~qk~~~g----~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~ 638 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSG----RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR 638 (1080)
T ss_pred EEEeccCchhhheehhccccCc----eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc
Confidence 7999999998765543321111 11111111 156789999999999887 579999999999999999999999
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCC
Q 001178 1007 VLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG 1086 (1131)
Q Consensus 1007 ~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg 1086 (1131)
.|.+....+...|.|-|||+...|+++.++|+-+|++..+..+|.. .+..+.|.+ |-..|++.+.||
T Consensus 639 ~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE------------~VTG~kF~n-DCkHlISvsgDg 705 (1080)
T KOG1408|consen 639 DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE------------AVTGVKFLN-DCKHLISVSGDG 705 (1080)
T ss_pred cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch------------heeeeeecc-cchhheeecCCc
Confidence 8888999999999999999999999999999999999998876542 233588988 568999999999
Q ss_pred cEEEEecCC
Q 001178 1087 SVKVIEPSE 1095 (1131)
Q Consensus 1087 ~v~iW~~~~ 1095 (1131)
+|++|+++.
T Consensus 706 CIFvW~lp~ 714 (1080)
T KOG1408|consen 706 CIFVWKLPL 714 (1080)
T ss_pred eEEEEECch
Confidence 999999964
No 14
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1e-37 Score=339.34 Aligned_cols=583 Identities=15% Similarity=0.169 Sum_probs=436.3
Q ss_pred EEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 001178 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHL 432 (1131)
Q Consensus 353 ~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~ 432 (1131)
..|..-|+.++++.+.+.+..+||.+.-..+. +-+.+...|+|++=..+--+.|++ +.
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~-------------------vs~~lp~~I~alas~~~~vy~A~g---~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLF-------------------VSKPLPDKITALASDKDYVYVASG---NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEE-------------------ecCCCCCceEEEEecCceEEEecC---cE
Confidence 56666676788899999999999998766654 234678899998866554444433 45
Q ss_pred EEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC-cee----EEecCCccCeEEEeec
Q 001178 433 IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-RKL----FQFEGHEAPVYSVCPH 506 (1131)
Q Consensus 433 i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~----~~~~~h~~~v~~~~~~ 506 (1131)
|.+|.. |+.++ ..+.+|.+.|.-+.-- |. .++++..++.+.||+ ..+ ..+ ..++...+.|+++. |
T Consensus 97 i~~~~r--gk~i~--~~~~~~~a~v~~l~~f--Ge--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIR--HTTLLHGAKVHLLLPF--GE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEE--EEeccccceEEEEeee--cc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666653 33233 3466788777776544 55 689999999999999 442 221 11222233377775 6
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecc
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 586 (1131)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 7766678999999999999999999999999999999999999999899999886 999999999999999999854
Q ss_pred cCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCc
Q 001178 587 RKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 587 ~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 665 (1131)
.+.|+.++|..||+ .+++|+..|.+-+||++..+.+..+.. .|...+....|-|....+++++.|+.+++|-..++.
T Consensus 244 -~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 244 -WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred -ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 45899999999997 555677779999999999888776652 223478999999999999999999999999766441
Q ss_pred hhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCccee
Q 001178 666 RALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWE 745 (1131)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~ 745 (1131)
-..+.+..
T Consensus 322 g~pR~LR~------------------------------------------------------------------------ 329 (910)
T KOG1539|consen 322 GVPRLLRS------------------------------------------------------------------------ 329 (910)
T ss_pred Ccchheee------------------------------------------------------------------------
Confidence 11111100
Q ss_pred eecccCCceeEEEEcCCCCCCccceEEEEee-cCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCccc
Q 001178 746 LTEIVDPLQCRVVAMPESTDSASKVARLLYT-NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLM 824 (1131)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 824 (1131)
..+|..+..++.|- .+|..+...+.|++++.+++....++.+-.. ......++.+
T Consensus 330 -----------------R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~ 385 (910)
T KOG1539|consen 330 -----------------RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKV 385 (910)
T ss_pred -----------------ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccc
Confidence 02366777777776 6788888889999888877655433221110 1111111111
Q ss_pred ccC-CCCCCCCCeeEEEecCC-----CCEEEEEe-CCeEEEEECCCcee-EEEEe-----CCCCCeeEEEEeCCCCcEEE
Q 001178 825 TND-VPENAEDVVPCVALSKN-----DSYVMSAG-GGKVSLFNMMNFKV-MTTFM-----SPPPASTFLAFHPQDNNIIA 891 (1131)
Q Consensus 825 ~~~-~~~~~~~~i~~l~~s~d-----g~~la~~~-dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~~~~~la 891 (1131)
... ...-.-.+|..+++... .+.+++.- +...+.|+..+... ...+. .....+++++.++ .|++.+
T Consensus 386 ~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~ 464 (910)
T KOG1539|consen 386 NVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVF 464 (910)
T ss_pred cccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEE
Confidence 000 00012345666666432 22333333 57799999987655 22232 2346799999999 999999
Q ss_pred EEeCCCcEEEEEeecceeEEee---cccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCc
Q 001178 892 IGMEDSTIQIYNVRVDEVKTKL---KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1131)
Q Consensus 892 ~g~~dg~I~iwd~~~~~~~~~~---~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1131)
.|+..|+|-+|++++|-....+ ..|.++|++++...-++.+++++.+|-+++||.++........ ....+
T Consensus 465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-------l~~~~ 537 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-------LGSSI 537 (910)
T ss_pred EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-------cCCCc
Confidence 9999999999999999888888 6899999999999889999999999999999999855322221 12567
Q ss_pred eEEEEcCCCcEEEE-EeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEe
Q 001178 969 TRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI 1047 (1131)
Q Consensus 969 ~~v~~s~d~~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~ 1047 (1131)
..+..+.....+++ .+|-.|+++|..+.+.++.+.+| ...|++++|||||++|++++.|++|++||+.++.++..+
T Consensus 538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh---~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH---GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc---ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 78888888777776 46889999999999999999988 899999999999999999999999999999999998877
Q ss_pred cCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecC-CcEEEEec
Q 001178 1048 APSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTD-GSVKVIEP 1093 (1131)
Q Consensus 1048 ~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~D-g~v~iW~~ 1093 (1131)
.... -++.+.|+| .+++|||...| .-|++|.-
T Consensus 615 ~vd~-------------~~~sls~SP-ngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 615 LVDS-------------PCTSLSFSP-NGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ecCC-------------cceeeEECC-CCCEEEEEEecCceEEEEEc
Confidence 5322 245699999 67899999999 56999974
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4e-40 Score=335.52 Aligned_cols=304 Identities=19% Similarity=0.292 Sum_probs=256.9
Q ss_pred cceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCC--CcccccccceeecccccccceeceeccCCCCCEEEE
Q 001178 338 RAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGL--RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRV 415 (1131)
Q Consensus 338 ~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 415 (1131)
....+.++|+.+|.+++|+|-..-++|+|+.|-+.++|++.. +.......+| .|...-- --......|+++
T Consensus 169 ~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-----h~~~~~~--~s~~~nkdVT~L 241 (524)
T KOG0273|consen 169 SSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-----HCIREGG--KSVPSNKDVTSL 241 (524)
T ss_pred ccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-----hhhhhhc--ccCCccCCcceE
Confidence 345556779999999999998766899999999999999874 1111100000 0000000 001224679999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEec
Q 001178 416 AWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE 494 (1131)
Q Consensus 416 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~ 494 (1131)
+|+.+|..||+|+.||.+++|+..++. + .++..|.++|.++.|+.+|. +|++++.|+++.+|| .+|.....+.
T Consensus 242 ~Wn~~G~~LatG~~~G~~riw~~~G~l-~---~tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 242 DWNNDGTLLATGSEDGEARIWNKDGNL-I---STLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred EecCCCCeEEEeecCcEEEEEecCchh-h---hhhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEeee
Confidence 999999999999999999999987743 2 26888999999999999999 899999999999999 8999999999
Q ss_pred CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC
Q 001178 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
-|..+-..+.|.. ...+++++.|+.|+++.+....+..++.+|...|.++.|+|.|.+|++++. |+++++|+.
T Consensus 316 ~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~TlkiWs~ 388 (524)
T KOG0273|consen 316 FHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKIWSM 388 (524)
T ss_pred eccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEeeec
Confidence 9998877777743 257999999999999999999999999999999999999999999999987 999999999
Q ss_pred CCCeeeEEEecccCCceEEEEEeCCC---------CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCC
Q 001178 575 SEGALKRTYIGFRKKSAGVVQFDTTR---------NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645 (1131)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~ 645 (1131)
........+..|.. .|..+.|+|++ ..+++++.|++|++||+..+.++..+..|.. +|++++|+|+|+
T Consensus 389 ~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvafS~~g~ 465 (524)
T KOG0273|consen 389 GQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAFSPNGR 465 (524)
T ss_pred CCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEecCCCc
Confidence 98889999998877 78889999976 3789999999999999999999999876654 899999999999
Q ss_pred EEEEEECCCcEEEEecCCC
Q 001178 646 LLVVTTADQGIKILANADG 664 (1131)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~ 664 (1131)
++|+|+.||.|.+|+..++
T Consensus 466 ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred EEEecCCCCeeEeccccch
Confidence 9999999999999998776
No 16
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.1e-37 Score=328.84 Aligned_cols=593 Identities=15% Similarity=0.201 Sum_probs=408.3
Q ss_pred EEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC---EEEEEeCC
Q 001178 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN---FIGVAFTK 430 (1131)
Q Consensus 354 ~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~---~las~~~d 430 (1131)
.|.|.+ ++|.|. ...|.+||..+.... ..+.||..+|+|+.|-|+.+ ++++|+.|
T Consensus 21 sw~~~~--~vafGa-~~~Iav~dp~k~~i~-------------------t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD 78 (764)
T KOG1063|consen 21 SWGPGG--LVAFGA-GPAIAVADPEKILIV-------------------TTLDGHVARVNCVHWLPTSEIVAEMVSGDSD 78 (764)
T ss_pred cccccc--eEEecC-CceEEEeCcccceeE-------------------EeccCCccceEEEEEcccccccceEEEccCC
Confidence 445655 466664 568999998765222 25889999999999999888 89999999
Q ss_pred CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCce---eEEecCCccC--eEEEee
Q 001178 431 HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK---LFQFEGHEAP--VYSVCP 505 (1131)
Q Consensus 431 ~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~h~~~--v~~~~~ 505 (1131)
+.|++|.++. +.+.....+.+|...+ +++..... .....+.|+++.+||..+.. +..++-..+. ..|+++
T Consensus 79 ~~v~lW~l~~-~~~~~i~~~~g~~~~~--~cv~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~ 153 (764)
T KOG1063|consen 79 GRVILWKLRD-EYLIKIYTIQGHCKEC--VCVVARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAA 153 (764)
T ss_pred CcEEEEEEee-hheEEEEeecCcceeE--EEEEeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhh
Confidence 9999999994 3455666777776554 45543333 22223789999999954433 2222222222 234555
Q ss_pred cccCCccEEEEEecCCeEEEEeCCCC--ceeEEecCCCceEEEEEEccCCC---EEEEEeecCCCCceEEEEeCCCCe--
Q 001178 506 HQKENIHFIFSTAVDGKIKAWLYDNV--GSRVDYDAPGLWCTTMLYSADGS---RLFSCGTSKEGDSHLVEWNESEGA-- 578 (1131)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~g~---~l~~~~~~~~~~~~i~iwd~~~~~-- 578 (1131)
.+.++.-.++.|+.+..|.++.-.+. .....+.+|..+|.+++|...+. +|++++ +|..|++|.+.-+.
T Consensus 154 ~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~~ 229 (764)
T KOG1063|consen 154 LKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDDE 229 (764)
T ss_pred hccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCCc
Confidence 55444345566677788888865433 34457889999999999987554 455554 38999999764222
Q ss_pred -------------------eeEE----------EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC--eEEEEEe
Q 001178 579 -------------------LKRT----------YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTE 627 (1131)
Q Consensus 579 -------------------~~~~----------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~ 627 (1131)
.... +.||.+ .|.++.|+|.+..|++++.|.++.+|...+. --+....
T Consensus 230 ~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR 308 (764)
T KOG1063|consen 230 DSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR 308 (764)
T ss_pred cccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE
Confidence 1111 226555 8999999999999999999999999987654 3332222
Q ss_pred cc---CCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccc
Q 001178 628 AE---GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAE 704 (1131)
Q Consensus 628 ~~---~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 704 (1131)
.. +.........|+|+++.+++-+..|..++|...+.
T Consensus 309 lGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~---------------------------------------- 348 (764)
T KOG1063|consen 309 LGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK---------------------------------------- 348 (764)
T ss_pred eecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc----------------------------------------
Confidence 21 22334788999999999999999999999983221
Q ss_pred cccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEE
Q 001178 705 RVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILA 784 (1131)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 784 (1131)
..|.. .+...+|...|..++|.|.|.++++
T Consensus 349 -------------------------------------~~w~~-------------~~~iSGH~~~V~dv~W~psGeflLs 378 (764)
T KOG1063|consen 349 -------------------------------------TFWTQ-------------EPVISGHVDGVKDVDWDPSGEFLLS 378 (764)
T ss_pred -------------------------------------cceee-------------ccccccccccceeeeecCCCCEEEE
Confidence 01110 1112458899999999999999999
Q ss_pred eeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeC-CeEEEEECC-
Q 001178 785 LWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG-GKVSLFNMM- 862 (1131)
Q Consensus 785 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d-g~i~vwd~~- 862 (1131)
.+.|.+-|+|---. +. .-|. ...-+.-|...+.|++|-+....+++|.| ..+|+|+..
T Consensus 379 vs~DQTTRlFa~wg-------~q------~~wH-------EiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk 438 (764)
T KOG1063|consen 379 VSLDQTTRLFARWG-------RQ------QEWH-------EIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPK 438 (764)
T ss_pred eccccceeeecccc-------cc------ccee-------eecccccccccceeeehccCCceeeecccceeeeeecCcH
Confidence 99999999875321 00 0011 11112258888999999885556666664 568888764
Q ss_pred ------------------------------------------Cce---------------------------------eE
Q 001178 863 ------------------------------------------NFK---------------------------------VM 867 (1131)
Q Consensus 863 ------------------------------------------~~~---------------------------------~~ 867 (1131)
+|. .+
T Consensus 439 ~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv 518 (764)
T KOG1063|consen 439 SFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEV 518 (764)
T ss_pred HHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhh
Confidence 000 01
Q ss_pred EEEeCCCCCeeEEEEeCCCCcEEEEEeCCC-----cEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEE
Q 001178 868 TTFMSPPPASTFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLI 942 (1131)
Q Consensus 868 ~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-----~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~ 942 (1131)
.++-+|...|.+++.+| +++++|+++... .|++|+..+...+..+.+|+-.|+.|+|||||++|++++.|+++.
T Consensus 519 ~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred HHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence 12236777899999999 999999998664 499999999888889999999999999999999999999999999
Q ss_pred EEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCc--ccceeeecCCCCCCCeEEEEEcc
Q 001178 943 FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKM--ECIRQWVPQDVLSSPISSAAYSC 1019 (1131)
Q Consensus 943 lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~--~~~~~~~~~~~~~~~v~~i~~s~ 1019 (1131)
+|+........... .. ...|..-|....|+|++.+++++ .|..|.+|..... +.+..+.. ..++.+|+++++.|
T Consensus 598 l~~~~~~~~~e~~f-a~-~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~-~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRF-AC-LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC-LKFSLAVTAVAYLP 674 (764)
T ss_pred eeeeecccchhhhh-cc-ccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch-hccCCceeeEEeec
Confidence 99986543322221 11 22233567888999999988886 4999999999987 55555322 23478999999987
Q ss_pred -----CCCEEEEEecCCcEEEEECCCCceeeEecCCccccC--CCCCCCCccccEEEEEcCC---------CCCeEEEEe
Q 001178 1020 -----NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQ--ASPNSSQTVFPLVVTSHPQ---------EPNQLAVGL 1083 (1131)
Q Consensus 1020 -----dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~v~~~p~---------~~~~l~s~~ 1083 (1131)
.+..+++|-+.|.|.+|....-........+..... ....+...|+ .++|.|. +...|++|+
T Consensus 675 ~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~--rl~w~p~~~~~~~~~~~~l~la~~g 752 (764)
T KOG1063|consen 675 VDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVN--RLLWRPTCSDDWVEDKEWLNLAVGG 752 (764)
T ss_pred cccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhh--eeEeccccccccccccceeEEeeec
Confidence 223778888999999999652111111111111100 1112344455 4667664 223679999
Q ss_pred cCCcEEEEecC
Q 001178 1084 TDGSVKVIEPS 1094 (1131)
Q Consensus 1084 ~Dg~v~iW~~~ 1094 (1131)
+|.+++++++.
T Consensus 753 ~D~~vri~nv~ 763 (764)
T KOG1063|consen 753 DDESVRIFNVD 763 (764)
T ss_pred ccceeEEeecc
Confidence 99999999875
No 17
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.7e-38 Score=334.43 Aligned_cols=639 Identities=15% Similarity=0.164 Sum_probs=404.3
Q ss_pred cccCCCCCcccccCCCcccceeeec-cCCCcEEEEEEecCCC--cEEEEEcCCCeEEEEECCCCcccccccceeeccccc
Q 001178 320 ATYPVPSQQATWSLDDLPRAVACTM-HQGSSVVSMDFHPFHH--TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNC 396 (1131)
Q Consensus 320 ~~~s~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~fspdg~--~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 396 (1131)
++|.....+++|.+... ..+.++ +|..+|+|+.|-|+.+ ..+++|+.||.|++|.+........
T Consensus 28 vafGa~~~Iav~dp~k~--~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i----------- 94 (764)
T KOG1063|consen 28 VAFGAGPAIAVADPEKI--LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI----------- 94 (764)
T ss_pred EEecCCceEEEeCcccc--eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE-----------
Confidence 56666666777766654 444455 5999999999999876 1388999999999999983332221
Q ss_pred ccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeec--CcCCeeEEEEecCCCceEEEEE
Q 001178 397 SMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDA--HVGGVNDLAFSYPNKQLCIVTC 474 (1131)
Q Consensus 397 ~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~--h~~~V~~l~~s~d~~~~~l~s~ 474 (1131)
..+.+|. +.+++++.......+...|+++.+||.+..+. .....+.- -..--.|+++.++.+..+++.|
T Consensus 95 ------~~~~g~~--~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~-~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~G 165 (764)
T KOG1063|consen 95 ------YTIQGHC--KECVCVVARSSVMTCKAADGTVSVWDKQQDEV-FLLAVLRFEIKEAIPLCLAALKNNKTFLLACG 165 (764)
T ss_pred ------EeecCcc--eeEEEEEeeeeEEEeeccCceEEEeecCCCce-eeehheehhhhhHhhHHHhhhccCCcEEEEec
Confidence 1344554 44555554444444447899999999965541 11111211 1222356777775555577788
Q ss_pred cCCCcEEEEe-CCC--ceeEEecCCccCeEEEeecccCC-ccEEEEEecCCeEEEEeCCCCc------------------
Q 001178 475 GDDKLIRVWD-LSG--RKLFQFEGHEAPVYSVCPHQKEN-IHFIFSTAVDGKIKAWLYDNVG------------------ 532 (1131)
Q Consensus 475 s~d~~i~iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~------------------ 532 (1131)
+.+..|.++. ..+ +.+..+.||.+.|.+++|..... .-+|+++|.|..||+|.+....
T Consensus 166 gs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~ 245 (764)
T KOG1063|consen 166 GSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLP 245 (764)
T ss_pred CcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCc
Confidence 8888888887 433 45678899999999999975544 4688899999999999764322
Q ss_pred ---ee---E-------EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC--eeeEEEe----cccCCceEE
Q 001178 533 ---SR---V-------DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG--ALKRTYI----GFRKKSAGV 593 (1131)
Q Consensus 533 ---~~---~-------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~----~~~~~~v~~ 593 (1131)
.. . .+.+|..+|.++.|.|.+..|++++. |.++.+|...+. -.+.... ++.......
T Consensus 246 ~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g 321 (764)
T KOG1063|consen 246 VFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWG 321 (764)
T ss_pred eeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceee
Confidence 00 0 12478899999999999999999887 889999986543 3332222 222335777
Q ss_pred EEEeCCCCEEEEEEcCCcEEEEEcCC-CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhh
Q 001178 594 VQFDTTRNRILAAGEDNQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIE 672 (1131)
Q Consensus 594 ~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1131)
.-|+|+++.+++-+..|..++|.... ..........+|...|.+++|+|.|.++++.+.|.+-|++..-..+...+.+.
T Consensus 322 ~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia 401 (764)
T KOG1063|consen 322 GLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA 401 (764)
T ss_pred EEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeec
Confidence 88999999999999999999998332 33344444456777999999999999999999999999986542211111111
Q ss_pred ccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCC
Q 001178 673 TRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDP 752 (1131)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~ 752 (1131)
+ ++..+..+.+++-- .....+++|...+.+|+|+......
T Consensus 402 -------R-----PQiHGyDl~c~~~v---------------------------n~~~~FVSgAdEKVlRvF~aPk~fv- 441 (764)
T KOG1063|consen 402 -------R-----PQIHGYDLTCLSFV---------------------------NEDLQFVSGADEKVLRVFEAPKSFV- 441 (764)
T ss_pred -------c-----cccccccceeeehc---------------------------cCCceeeecccceeeeeecCcHHHH-
Confidence 0 00111110011100 0012233444444444444332100
Q ss_pred ceeEEEEcCCCCCCccceEE-----EEeecCCceEEEeeecceeeE-EeecCCCCCCCCc--cceeeeceeecCCCC-cc
Q 001178 753 LQCRVVAMPESTDSASKVAR-----LLYTNSGIGILALWSNGVQKL-WKWNRTEQNPSGK--ATAAVAPQHWQPSNG-LL 823 (1131)
Q Consensus 753 ~~~~~~~~~~~~~~~~~i~~-----l~~s~~g~~l~~~~~dg~i~i-w~~~~~~~~~~~~--~~~~~~~~~w~~~~~-~~ 823 (1131)
. .-..+.. ..-.|+|-.+-+.+-...-.. -+.+.+.....-. ..+.....+..+... .+
T Consensus 442 ---~---------~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqL 509 (764)
T KOG1063|consen 442 ---K---------SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQL 509 (764)
T ss_pred ---H---------HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHH
Confidence 0 0001111 001111211111111000000 0000000000000 000000011111111 01
Q ss_pred ----cccCCCC--CCCCCeeEEEecCCCCEEEEEe-C-----CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEE
Q 001178 824 ----MTNDVPE--NAEDVVPCVALSKNDSYVMSAG-G-----GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIA 891 (1131)
Q Consensus 824 ----~~~~~~~--~~~~~i~~l~~s~dg~~la~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la 891 (1131)
+..+..+ +|...|.+++.+|+|+++|++. . ..|++|+..+...++.+..|.-.|+.++||| |+++|+
T Consensus 510 q~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LL 588 (764)
T KOG1063|consen 510 QQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLL 588 (764)
T ss_pred HHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEE
Confidence 1111111 7999999999999999999987 2 2499999999999999999999999999999 999999
Q ss_pred EEeCCCcEEEEEeeccee----EEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCC
Q 001178 892 IGMEDSTIQIYNVRVDEV----KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVG 967 (1131)
Q Consensus 892 ~g~~dg~I~iwd~~~~~~----~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 967 (1131)
+.+.|.++.+|....... ....+.|+.-|.+..|+|++.++||+|+|++|++|........... +.........
T Consensus 589 svsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~--~~a~~~~~~a 666 (764)
T KOG1063|consen 589 SVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYIS--RFACLKFSLA 666 (764)
T ss_pred EeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhh--hhchhccCCc
Confidence 999999999999864321 2337889999999999999999999999999999998876311111 1122233478
Q ss_pred ceEEEEcCC-----CcEEEEE-eCCeEEEEeCC---------CcccceeeecCCCCCCCeEEEEEccC----------CC
Q 001178 968 ETRVQFHSD-----QVRLLVN-HETQLAIYDGS---------KMECIRQWVPQDVLSSPISSAAYSCN----------SQ 1022 (1131)
Q Consensus 968 v~~v~~s~d-----~~~l~~~-~d~~i~vwd~~---------~~~~~~~~~~~~~~~~~v~~i~~s~d----------g~ 1022 (1131)
++.+++.|- +..+++| ..|.|.+|... +......+..+.++...|+.++|+|- ..
T Consensus 667 VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l 746 (764)
T KOG1063|consen 667 VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWL 746 (764)
T ss_pred eeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecccccccccccccee
Confidence 888888763 2255666 47999999855 12222333444556889999999974 23
Q ss_pred EEEEEecCCcEEEEECC
Q 001178 1023 LIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 1023 ~l~s~~~dg~i~vwd~~ 1039 (1131)
.|++|++|..++++++.
T Consensus 747 ~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 747 NLAVGGDDESVRIFNVD 763 (764)
T ss_pred EEeeecccceeEEeecc
Confidence 57999999999999864
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-39 Score=305.59 Aligned_cols=294 Identities=23% Similarity=0.297 Sum_probs=255.0
Q ss_pred ecc-CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 343 TMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 343 ~~~-h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
+++ |++.|+.++..+.+..++.+++.|.++.+|++.......-. ....++||+..|..++.++||
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~dg 75 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSSDG 75 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEccCC
Confidence 454 99999999999998889999999999999999765332211 122588999999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCC--ccC
Q 001178 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH--EAP 499 (1131)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h--~~~ 499 (1131)
++.++++.|+++++||+.+++..+ .|.||...|.+++|++|.+ .++||+.|++|++||.-|.+..++..+ .+.
T Consensus 76 ~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREW 150 (315)
T ss_pred ceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccEEEEEecCCCcCc
Confidence 999999999999999999986443 6899999999999999999 699999999999999888888777654 789
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee
Q 001178 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 579 (1131)
|.|++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||..+++++. +|.+.+||+..++.
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNEGKN 226 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccCCce
Confidence 99999999987899999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCC-------CCCcceEEEcCCCCEEEEEEC
Q 001178 580 KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG-------LPSLPRLRFNKEGNLLVVTTA 652 (1131)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~i~~v~~sp~~~~l~~~~~ 652 (1131)
+..+.. ...|.+++|+|+.-.|+. ..+..|+|||+.++..+..+..... .....+++|++||..|+.|..
T Consensus 227 lysl~a--~~~v~sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 227 LYSLEA--FDIVNSLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred eEeccC--CCeEeeEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence 877764 348999999998655444 4556699999999988877655422 223457899999999999999
Q ss_pred CCcEEEEecC
Q 001178 653 DQGIKILANA 662 (1131)
Q Consensus 653 dg~i~iw~~~ 662 (1131)
|+.|++|.+.
T Consensus 304 d~~irv~qv~ 313 (315)
T KOG0279|consen 304 DNVIRVWQVA 313 (315)
T ss_pred CCcEEEEEee
Confidence 9999999864
No 19
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.2e-40 Score=331.99 Aligned_cols=283 Identities=17% Similarity=0.260 Sum_probs=263.5
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC--C
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD--G 421 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd--g 421 (1131)
++.+.+|..+.||+|++ +||||+-+|.++||+..+...+. ++.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence 45778999999999998 69999999999999999886554 68899999999999996 6
Q ss_pred CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCe
Q 001178 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPV 500 (1131)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v 500 (1131)
..||+|+.||++++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++|| .++..+...+||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876554 6899999999999999999 899999999999999 8888888899999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
.+++|++ ||..++||+.|..-+|||++++.++..+.+|..+|.++.|+|+|-.||+|+. |++++|||++..+.+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999965 6689999999999999999999999999999999999999999999999986 999999999999999
Q ss_pred EEEecccCCceEEEEEeC-CCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001178 581 RTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw 659 (1131)
.++.+|.+ .|+.++|+| .|.+|++++.|+++++|...+..+++.+.+|.. .|.++.+++|+..+++++.|.++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeec
Confidence 99999877 899999998 678999999999999999999999999987765 89999999999999999999999999
Q ss_pred e
Q 001178 660 A 660 (1131)
Q Consensus 660 ~ 660 (1131)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.3e-38 Score=300.96 Aligned_cols=289 Identities=18% Similarity=0.251 Sum_probs=262.1
Q ss_pred eecc-CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 342 CTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 342 ~~~~-h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
++|+ |...|.++.|++|.++ +++++.||.+.|||.-+...... +.-...+|..+||+|.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sPS 108 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSPS 108 (343)
T ss_pred EEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECCC
Confidence 5564 9999999999999985 99999999999999988776652 4455789999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCC--C-ccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCC
Q 001178 421 GNFIGVAFTKHLIHLYTYQGS--N-DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1131)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~--~-~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h 496 (1131)
|+++|+|+-|+...||++.+. + ......++.+|++.+.|+.|.+|+. |+|+|.|.++.+|| .+|+.+..|.+|
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCC
Confidence 999999999999999999864 2 2344457899999999999999776 99999999999999 999999999999
Q ss_pred ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|+++.|.|+|.-+++++. |+..++||++.
T Consensus 186 ~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlRa 260 (343)
T KOG0286|consen 186 TGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLRA 260 (343)
T ss_pred cccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeecC
Confidence 999999999875 6789999999999999999999999999999999999999999999999986 99999999999
Q ss_pred CeeeEEEeccc-CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCc
Q 001178 577 GALKRTYIGFR-KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1131)
Q Consensus 577 ~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~ 655 (1131)
.+.+..|.... ..+|++++|+..|++|++|..|.++.+||.-.++.+..+..|.+ .|.++..+|||..+++|+.|..
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhHh
Confidence 99888887432 23789999999999999999999999999999999999987766 8999999999999999999999
Q ss_pred EEEEe
Q 001178 656 IKILA 660 (1131)
Q Consensus 656 i~iw~ 660 (1131)
++||.
T Consensus 339 lriW~ 343 (343)
T KOG0286|consen 339 LRIWA 343 (343)
T ss_pred eeecC
Confidence 99994
No 21
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-37 Score=328.84 Aligned_cols=598 Identities=13% Similarity=0.167 Sum_probs=384.7
Q ss_pred cccCCCCCcccccCCCcccceeeecc-CCCcEEEEEEecCCCcEEEEEc--CCCeEEEEECCCCcccccccceeeccccc
Q 001178 320 ATYPVPSQQATWSLDDLPRAVACTMH-QGSSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNC 396 (1131)
Q Consensus 320 ~~~s~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~fspdg~~llasg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 396 (1131)
++++++..++.+.++.-++. +.+. |...++|+||||+|+| +|+|- ..-.++||++..-..+.
T Consensus 52 ~aYpAGCvVVlfn~~~~tQ~--hlvnssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVA------------ 116 (1080)
T KOG1408|consen 52 CAYPAGCVVVLFNVDSCTQS--HLVNSSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVA------------ 116 (1080)
T ss_pred eeeccCcEEEEEcccccchh--heecccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchh------------
Confidence 56666666777777764432 3333 7779999999999995 89885 45579999998766554
Q ss_pred ccceeceeccCCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEE
Q 001178 397 SMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT--KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC 474 (1131)
Q Consensus 397 ~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~ 474 (1131)
-+..|.-.|+|++|+|.++|+++.+. |-.|.+||.+...... -..-...|..++|+.||. +++|.
T Consensus 117 -------EfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~ 183 (1080)
T KOG1408|consen 117 -------EFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTS 183 (1080)
T ss_pred -------hhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeee
Confidence 26689999999999999999998765 5578889876543221 122345799999999999 78887
Q ss_pred cCCCcEEEEeCCCce-eEE---ecCCccCeEEEeecc-----cCCc---cEEEEEecCCeEEEEeCCCCceeEEe-cCCC
Q 001178 475 GDDKLIRVWDLSGRK-LFQ---FEGHEAPVYSVCPHQ-----KENI---HFIFSTAVDGKIKAWLYDNVGSRVDY-DAPG 541 (1131)
Q Consensus 475 s~d~~i~iwd~~~~~-~~~---~~~h~~~v~~~~~~~-----~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~ 541 (1131)
+ ...|++|.+.+.. ... +.+...-.-.+.++. -+.| .--++.+..|.+.-+.-+ ..+-++ ....
T Consensus 184 g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsR--RLLDKWVqcRT 260 (1080)
T KOG1408|consen 184 G-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSR--RLLDKWVQCRT 260 (1080)
T ss_pred e-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechh--hhhhhhhhhhc
Confidence 7 4689999943322 111 111111111111100 0000 001111222333222111 110000 1112
Q ss_pred ceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc--------------------C---CceEEEEEeC
Q 001178 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR--------------------K---KSAGVVQFDT 598 (1131)
Q Consensus 542 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--------------------~---~~v~~~~~s~ 598 (1131)
....+++++ .+++++++. +|.|++++..+-....++...+ . ...-++.|++
T Consensus 261 TnAnCIcVs--~r~I~cgCa----~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fde 334 (1080)
T KOG1408|consen 261 TNANCICVS--SRLIACGCA----KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDE 334 (1080)
T ss_pred cccceeeee--cceEEEeec----cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecC
Confidence 223455554 568888887 9999999987654433322110 0 0123467898
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCeEEEEE-eccCCCCCcceEEEcCC-----------CCEEEEEECCCcEEEEecCCCch
Q 001178 599 TRNRILAAGEDNQIKFWDMDNVNMLTST-EAEGGLPSLPRLRFNKE-----------GNLLVVTTADQGIKILANADGLR 666 (1131)
Q Consensus 599 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~i~~v~~sp~-----------~~~l~~~~~dg~i~iw~~~~~~~ 666 (1131)
....+.+...|..|+|||++.-+.+... ..-.|...|..+.--|. ...+++++.|++|++|++.....
T Consensus 335 t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn 414 (1080)
T KOG1408|consen 335 TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN 414 (1080)
T ss_pred CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc
Confidence 8899999999999999999874432211 11111112333322220 23588999999999999876311
Q ss_pred hhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceee
Q 001178 667 ALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWEL 746 (1131)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~ 746 (1131)
-..+..+. ++.++... -......+++- |...-+++-
T Consensus 415 -n~vyrRNi--------------------ls~~l~ki-----~y~d~~~q~~~------------------d~~~~~fdk 450 (1080)
T KOG1408|consen 415 -NQVYRRNI--------------------LSANLSKI-----PYEDSTQQIMH------------------DASAGIFDK 450 (1080)
T ss_pred -cceeeccc--------------------chhhhhcC-----ccccCchhhhh------------------hccCCcccc
Confidence 00000000 00000000 00000000000 000001111
Q ss_pred ecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCccccc
Q 001178 747 TEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN 826 (1131)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 826 (1131)
.. .........+.+++++|+|++|++|..-|++++|++..-+..
T Consensus 451 a~------------~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~------------------------ 494 (1080)
T KOG1408|consen 451 AL------------VSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT------------------------ 494 (1080)
T ss_pred cc------------hhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh------------------------
Confidence 00 000124567899999999999999999999999987542111
Q ss_pred CCCCCCCCCeeEEEecC---CCCEEEEEe-CCeEEEEECCC-ceeEEEEeCCCCCeeEEEEeCCC-CcEEEEEeCCCcEE
Q 001178 827 DVPENAEDVVPCVALSK---NDSYVMSAG-GGKVSLFNMMN-FKVMTTFMSPPPASTFLAFHPQD-NNIIAIGMEDSTIQ 900 (1131)
Q Consensus 827 ~~~~~~~~~i~~l~~s~---dg~~la~~~-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~-~~~la~g~~dg~I~ 900 (1131)
...+.|..+|.|+.||. ..++||+++ |.-|.|||+.. ..+++++.+|...|+++.|.-.+ +..+++++.|..|.
T Consensus 495 ~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim 574 (1080)
T KOG1408|consen 495 CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM 574 (1080)
T ss_pred hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh
Confidence 12236999999999985 357899999 78899999864 56778899999999999998733 26677888898875
Q ss_pred EEEeecceeEEeeccc-----ccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcC
Q 001178 901 IYNVRVDEVKTKLKGH-----QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1131)
Q Consensus 901 iwd~~~~~~~~~~~~h-----~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 975 (1131)
+--.....-...+..| ...+..++..|..+++++++.|+.|+||++++++..+.... ...+.+....+...|
T Consensus 575 Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg---s~~~eG~lIKv~lDP 651 (1080)
T KOG1408|consen 575 FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG---SRDHEGDLIKVILDP 651 (1080)
T ss_pred eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc---cccCCCceEEEEECC
Confidence 4332211111122212 24688999999999999999999999999999886544322 223336778899999
Q ss_pred CCcEEEEE-eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 001178 976 DQVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 976 d~~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
.|.|++++ +|.++.++|..+|+++.+..+| +..|+.+.|++|.+.|++.+.||.|+||.+..
T Consensus 652 SgiY~atScsdktl~~~Df~sgEcvA~m~GH---sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 652 SGIYLATSCSDKTLCFVDFVSGECVAQMTGH---SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CccEEEEeecCCceEEEEeccchhhhhhcCc---chheeeeeecccchhheeecCCceEEEEECch
Confidence 99999985 7999999999999999999888 89999999999999999999999999999874
No 22
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.4e-38 Score=341.58 Aligned_cols=278 Identities=20% Similarity=0.310 Sum_probs=240.5
Q ss_pred ccccCCCcccceeeecc-CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccc---ccee---------ecccc
Q 001178 329 ATWSLDDLPRAVACTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSK---PFKI---------WDMSN 395 (1131)
Q Consensus 329 ~~~~~~~~~~~~~~~~~-h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~---~~~~---------~~~~~ 395 (1131)
+..+.+..|..++.++. -...++|+.||+|++ +||.|..|..|++|.+...+....+ .+.- -++..
T Consensus 359 ~~l~~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D 437 (707)
T KOG0263|consen 359 VKLGRNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLD 437 (707)
T ss_pred hhcCCCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhcc
Confidence 34456777888888876 567999999999998 7999999999999999854321110 0000 11111
Q ss_pred cccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc
Q 001178 396 CSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG 475 (1131)
Q Consensus 396 ~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s 475 (1131)
.........+.||.++|..+.|+|+.++|++++.|++|++|.+.+..++. .+.||..+|+++.|+|-|- ++||+|
T Consensus 438 ~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas 512 (707)
T KOG0263|consen 438 DDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATAS 512 (707)
T ss_pred ccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecC
Confidence 22222334588999999999999999999999999999999999976553 6789999999999999998 899999
Q ss_pred CCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCC
Q 001178 476 DDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS 554 (1131)
Q Consensus 476 ~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~ 554 (1131)
.|++.++|. ....+++.+.+|.+.|.|+.|+|+. .++++||.|.+||+||+.++.....+.+|..+|.+++|+|+|+
T Consensus 513 ~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 513 HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR 590 (707)
T ss_pred CCceeeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc
Confidence 999999999 8888999999999999999998755 7999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 555 RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
+|++++. ++.|.+||+.++.++..+.+|. +.+.++.|+.+|..|++|+.|.+|++||+..
T Consensus 591 ~LaSg~e----d~~I~iWDl~~~~~v~~l~~Ht-~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 591 YLASGDE----DGLIKIWDLANGSLVKQLKGHT-GTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eEeeccc----CCcEEEEEcCCCcchhhhhccc-CceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999987 9999999999999999999984 4999999999999999999999999999865
No 23
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.9e-39 Score=321.61 Aligned_cols=284 Identities=20% Similarity=0.306 Sum_probs=256.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-C
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L 485 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 485 (1131)
|.+.+|..+.||+|++.||+|+.+|.++||+..+...+ .+|.||...|.++.|+|......++||+.||++++|+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~---~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL---QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee---EEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 56789999999999999999999999999999887543 4799999999999999984223799999999999999 4
Q ss_pred CCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCC
Q 001178 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
+..++..+.+|...|..++|+|+ |++|.|++.|.+-++||+++........+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPs--G~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPS--GKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecCC--CceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 55889999999999999999764 589999999999999999999999999999999999999999999999997
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC-CC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EG 644 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp-~~ 644 (1131)
|..-+|||+++|+.+..+.+|.. .|..+.|+|+|-.+++|+.|++++|||++....+.++..|.. -|+.+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 88889999999999999999766 899999999999999999999999999999999988887766 799999999 78
Q ss_pred CEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCcc
Q 001178 645 NLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSA 724 (1131)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~ 724 (1131)
.+|++++.|++++||...+. .+++.+
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksL----------------------------------------------------- 426 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSL----------------------------------------------------- 426 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhh-----------------------------------------------------
Confidence 99999999999999987655 233322
Q ss_pred ccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEe
Q 001178 725 ARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1131)
Q Consensus 725 ~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1131)
.+|.+.|.++.+++++..+++++.|.++++|.
T Consensus 427 ---------------------------------------aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 ---------------------------------------AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ---------------------------------------cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 34888999999999999999999999999984
No 24
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=322.85 Aligned_cols=565 Identities=12% Similarity=0.174 Sum_probs=413.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
+.+.|+|++=+.+- +.+++ ...|.+|.- |+.+. +++.+|...|.-+. |=|.++.
T Consensus 75 lp~~I~alas~~~~---vy~A~-g~~i~~~~r--gk~i~------------------~~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDY---VYVAS-GNKIYAYAR--GKHIR------------------HTTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCce---EEEec-CcEEEEEEc--cceEE------------------EEeccccceEEEEe--eecceEE
Confidence 78899999876553 33332 346777753 33322 24667777777654 4578999
Q ss_pred EEeCCCeEEEEEecCC-Cccceeeeee-cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEE
Q 001178 426 VAFTKHLIHLYTYQGS-NDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~-~~~~~~~~~~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 502 (1131)
++..++.+.||+..++ +......++. .-.+.|+++. +|..---.++.|+.+|.+++|+ .+++.++++.++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999884 2211111222 2222366654 4443222689999999999999 999999999999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEE
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 582 (1131)
+.-+|. -+.++.|..+|+|.+++++..+.+..+....+.|++++|..||+.+++.+. ..|.+.+||++..+++..
T Consensus 208 ieqsPa--LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 208 IEQSPA--LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLINV 282 (910)
T ss_pred eccCCc--ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeeee
Confidence 976554 468999999999999999999999999887789999999999998877664 268999999999988888
Q ss_pred EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC--CeEEEEEeccCCCCCcceEEEc-CCCCEEEEEECCCcEEEE
Q 001178 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN--VNMLTSTEAEGGLPSLPRLRFN-KEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~i~~v~~s-p~~~~l~~~~~dg~i~iw 659 (1131)
....+.+.+....|.|....+++++.|+.+++|=.++ |.+.......+|..+..++.|. .+|..+.+++.|++++.+
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 8766666888899999999999999999999885554 3222222223555588999998 689999999999999988
Q ss_pred ecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCC
Q 001178 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISD 739 (1131)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~ 739 (1131)
++.........-+.|...- .+..+ .+++ -....++...++..........+.+...-.+.
T Consensus 363 s~~~e~~~~~l~~~~~~~~------~kk~~-----~~~~---------~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~ 422 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKR------AKKVN-----VFST---------EKLKLPPIVEFAFENAREKEWDNVITAHKGKR 422 (910)
T ss_pred hhhHHHHhHhhcccccccc------ccccc-----ccch---------hhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence 8654311111111110000 00000 0000 01112223334444444455566666666677
Q ss_pred CCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCC
Q 001178 740 KTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPS 819 (1131)
Q Consensus 740 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 819 (1131)
..+.|+..+........ .-.........+.+++.++.|...+.|.+.|.|.+|+++.+-.
T Consensus 423 ~~~tW~~~n~~~G~~~L--~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~------------------ 482 (910)
T KOG1539|consen 423 SAYTWNFRNKTSGRHVL--DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH------------------ 482 (910)
T ss_pred eEEEEeccCcccccEEe--cCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee------------------
Confidence 88889887644321111 0000112457889999999999999999999999888755321
Q ss_pred CCcccccCC-CCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC
Q 001178 820 NGLLMTNDV-PENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS 897 (1131)
Q Consensus 820 ~~~~~~~~~-~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg 897 (1131)
....- ...|..+|+.++...-++.+++++ +|.+++||..+...+..+.. ...+.++.++. ...++|.+..|-
T Consensus 483 ----r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr-~s~l~a~~~ddf 556 (910)
T KOG1539|consen 483 ----RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHR-VSDLLAIALDDF 556 (910)
T ss_pred ----ecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeee-hhhhhhhhcCce
Confidence 11100 125899999999999888898888 99999999999888887764 45688888888 788999999999
Q ss_pred cEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCC
Q 001178 898 TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1131)
Q Consensus 898 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 977 (1131)
.|+++|..+.+.+..+.||.+.|++++|||||++|++++.|++|++||+.++......... .+...+.|+|.|
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-------~~~~sls~SPng 629 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-------SPCTSLSFSPNG 629 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-------CcceeeEECCCC
Confidence 9999999999999999999999999999999999999999999999999998865554433 788999999999
Q ss_pred cEEEEEe--CCeEEEEeCCC
Q 001178 978 VRLLVNH--ETQLAIYDGSK 995 (1131)
Q Consensus 978 ~~l~~~~--d~~i~vwd~~~ 995 (1131)
.+||+.+ ...|++|.-.+
T Consensus 630 D~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 630 DFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CEEEEEEecCceEEEEEchh
Confidence 9999976 36799997543
No 25
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-36 Score=315.72 Aligned_cols=474 Identities=16% Similarity=0.256 Sum_probs=354.4
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.+++.|-|+.|+|...+ +.++-.+|.|.|||.++...++. +.-..-+|.+..|-+-.+++
T Consensus 11 ~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWi 70 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWI 70 (794)
T ss_pred ccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceE
Confidence 38899999999999986 56677899999999999887763 33345689999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~~ 502 (1131)
++|++|..|+||+..+++.+. .+.+|...|.+++.+|... +++|+|+|-+|++|| ..-.+.++|.||+.-|.+
T Consensus 71 v~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq 145 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ 145 (794)
T ss_pred EEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEE
Confidence 999999999999999987554 7899999999999999998 899999999999999 445677899999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCC--CEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG--SRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
++|+|.+ .+.+++++-|++|++|.+....+..++.+|...|+++.|-+-| .+|++++. |..+++||.++..++
T Consensus 146 v~fnPkD-~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 146 VAFNPKD-PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCV 220 (794)
T ss_pred EEecCCC-ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHH
Confidence 9999854 4799999999999999999999999999999999999998755 68999986 899999999999999
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
+++.||.+ .|..++|+|.-..+++|++||+++||+..+-+...++..... .+.+++-.+.++.+++|.++|.+.+ .
T Consensus 221 ~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~Deg~i~v-~ 296 (794)
T KOG0276|consen 221 QTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDEGSVTV-K 296 (794)
T ss_pred HHhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccCCcEEE-E
Confidence 99999887 899999999999999999999999999999888777765544 7999999998899999998888765 2
Q ss_pred cCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCC
Q 001178 661 NADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDK 740 (1131)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~ 740 (1131)
+..+. +.++-+..|
T Consensus 297 lgree-----------------------------------------------------------------P~vsMd~~g- 310 (794)
T KOG0276|consen 297 LGREE-----------------------------------------------------------------PAVSMDSNG- 310 (794)
T ss_pred ccCCC-----------------------------------------------------------------CceeecCCc-
Confidence 21110 001111111
Q ss_pred CcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCC
Q 001178 741 TKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSN 820 (1131)
Q Consensus 741 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~ 820 (1131)
--+|...+ .|..+-. -+.+..+ ....
T Consensus 311 KIiwa~~~--------------------ei~~~~~-------ks~~~~~---------------------------ev~D 336 (794)
T KOG0276|consen 311 KIIWAVHS--------------------EIQAVNL-------KSVGAQK---------------------------EVTD 336 (794)
T ss_pred cEEEEcCc--------------------eeeeeec-------eeccCcc---------------------------cccC
Confidence 01222111 1111000 0000000 1112
Q ss_pred CcccccCCCC--CCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCc
Q 001178 821 GLLMTNDVPE--NAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDST 898 (1131)
Q Consensus 821 ~~~~~~~~~~--~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~ 898 (1131)
|+.+...+.+ .-.-....++-||+|+++++++||.-.||..-..+. ...+.-....|++ +....|+-..++.
T Consensus 337 gErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~ 410 (794)
T KOG0276|consen 337 GERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGN 410 (794)
T ss_pred CccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCc
Confidence 2211111111 112223457889999999999999999987432211 2345567788999 7777788888899
Q ss_pred EEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCc
Q 001178 899 IQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 899 I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 978 (1131)
|+++ ++.+....++..-. +..+ -.|.+|... .++.+++||.++++...... .....+.|+.+|.
T Consensus 411 vki~--knfke~ksi~~~~~---~e~i-~gg~Llg~~-ss~~~~fydW~~~~lVrrI~---------v~~k~v~w~d~g~ 474 (794)
T KOG0276|consen 411 VKIF--KNFKEHKSIRPDMS---AEGI-FGGPLLGVR-SSDFLCFYDWESGELVRRIE---------VTSKHVYWSDNGE 474 (794)
T ss_pred eEEE--ecceeccccccccc---eeee-cCCceEEEE-eCCeEEEEEcccceEEEEEe---------eccceeEEecCCC
Confidence 9998 56665555542211 1111 134455554 45579999999987655443 3456789999999
Q ss_pred EEEEEeCCeEEEEeCC
Q 001178 979 RLLVNHETQLAIYDGS 994 (1131)
Q Consensus 979 ~l~~~~d~~i~vwd~~ 994 (1131)
+++.+.|...+++...
T Consensus 475 lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 475 LVAIAGDDSFYILKFN 490 (794)
T ss_pred EEEEEecCceeEEEec
Confidence 9999988887776554
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-35 Score=307.19 Aligned_cols=464 Identities=17% Similarity=0.238 Sum_probs=352.2
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+..++..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+--+ ++++|++|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 44588999999999999999999999999999999977665 5666778999999998877 899999999999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc-eeEEecCCCceEEEEEEcc-CCCEEEEEee
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSA-DGSRLFSCGT 561 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~ 561 (1131)
.+++.+..|..|.+-|.+++.||.. .+++++|+|-+|++||++..- +...+.+|.+.|.+++|+| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 9999999999999999999999876 699999999999999998764 4568999999999999999 6678999987
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCC--CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEE
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR--NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1131)
|++|++|.+.+..+..++.+|.. .|+++.+-+.| +++++|++|.+|+|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 99999999999999999999877 89999998755 6999999999999999999999999998876 799999
Q ss_pred EcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcccccc
Q 001178 640 FNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719 (1131)
Q Consensus 640 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~ 719 (1131)
|+|.-.++++|+.||+++||+..+- +....+.
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn----------------------------------------------- 266 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN----------------------------------------------- 266 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhh-----------------------------------------------
Confidence 9999999999999999999987654 2111110
Q ss_pred CCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCC
Q 001178 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRT 799 (1131)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 799 (1131)
-...++.+++..+.+..++.|.+.|.+.+= +
T Consensus 267 ---------------------------------------------~gleRvW~I~~~k~~~~i~vG~Deg~i~v~-l--- 297 (794)
T KOG0276|consen 267 ---------------------------------------------YGLERVWCIAAHKGDGKIAVGFDEGSVTVK-L--- 297 (794)
T ss_pred ---------------------------------------------cCCceEEEEeecCCCCeEEEeccCCcEEEE-c---
Confidence 023456666666777777888777776541 1
Q ss_pred CCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeC--CeEEEE------ECCCceeEEE--
Q 001178 800 EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG--GKVSLF------NMMNFKVMTT-- 869 (1131)
Q Consensus 800 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d--g~i~vw------d~~~~~~~~~-- 869 (1131)
+... ..+.+++.|+.+-+... -.+.+- ++.+|+.+..
T Consensus 298 -------------------------------gree--P~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~Lsv 344 (794)
T KOG0276|consen 298 -------------------------------GREE--PAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSV 344 (794)
T ss_pred -------------------------------cCCC--CceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchh
Confidence 1122 23455566655544332 112222 2333333211
Q ss_pred --EeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001178 870 --FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 870 --~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
+-.-.-....++-+| +|++++++ .||.-.||..-..+ ..+.+.-....|++|.+..++--.++.|+++ +
T Consensus 345 KeLgs~eiyPq~L~hsP-NGrfV~Vc-gdGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--k 415 (794)
T KOG0276|consen 345 KELGSVEIYPQTLAHSP-NGRFVVVC-GDGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--K 415 (794)
T ss_pred hhccccccchHHhccCC-CCcEEEEe-cCccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--e
Confidence 111112245678899 88887755 57888888743222 1244566778899998888888888889988 4
Q ss_pred CCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEE
Q 001178 948 TWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYAT 1027 (1131)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~ 1027 (1131)
..+........ ..+.+--.|.+|.+.+++.+++||..++..++.+... ...+.|+.+|.+++.+
T Consensus 416 nfke~ksi~~~----------~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~------~k~v~w~d~g~lVai~ 479 (794)
T KOG0276|consen 416 NFKEHKSIRPD----------MSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVT------SKHVYWSDNGELVAIA 479 (794)
T ss_pred cceeccccccc----------cceeeecCCceEEEEeCCeEEEEEcccceEEEEEeec------cceeEEecCCCEEEEE
Confidence 43332222111 1122233466777788999999999999999988654 4577999999999988
Q ss_pred ecCCcEEEEEC
Q 001178 1028 FTDGSIGVFDA 1038 (1131)
Q Consensus 1028 ~~dg~i~vwd~ 1038 (1131)
+.| +.+++.+
T Consensus 480 ~d~-Sfyil~~ 489 (794)
T KOG0276|consen 480 GDD-SFYILKF 489 (794)
T ss_pred ecC-ceeEEEe
Confidence 844 4455543
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.9e-36 Score=287.52 Aligned_cols=286 Identities=17% Similarity=0.239 Sum_probs=256.4
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
+++||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ +++.|+-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 688999999999999999999999999999999998866443 4555678999999999999 89999999999999
Q ss_pred eCC-C------ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc-CCCE
Q 001178 484 DLS-G------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSR 555 (1131)
Q Consensus 484 d~~-~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~ 555 (1131)
+++ . +..+.+.+|++.+.+..|.. | ..|+++|.|.+..+||+++++....+.+|...|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 933 2 23467889999999999854 3 5799999999999999999999999999999999999999 9999
Q ss_pred EEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCc
Q 001178 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i 635 (1131)
+++++. |...++||++.+..+++|.+|.. .|++++|.|+|.-+++|++|++.++||++..+.+..+....-...|
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 999998 89999999999999999999876 8999999999999999999999999999999999998877777789
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcc
Q 001178 636 PRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPS 715 (1131)
Q Consensus 636 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~ 715 (1131)
++++||..|++|+.|..|.++.+||.-.+.+ ...
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~-vg~--------------------------------------------- 310 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGER-VGV--------------------------------------------- 310 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccce-EEE---------------------------------------------
Confidence 9999999999999999999999999755410 000
Q ss_pred ccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEe
Q 001178 716 TILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1131)
Q Consensus 716 ~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1131)
+ .+|.++|.++..+|||..+++++.|..++||.
T Consensus 311 --------------------------------------------L---~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 311 --------------------------------------------L---AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --------------------------------------------e---eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 0 23999999999999999999999999999983
No 28
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-34 Score=309.51 Aligned_cols=555 Identities=17% Similarity=0.240 Sum_probs=384.6
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
.+..|-.++|+|...+ +.++-..|.|++||..-+.++.. +..|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 5678999999999985 77888999999999999888763 779999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVC 504 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~ 504 (1131)
+|++|..|+||+.++.+|+. ++.||-..|..+.|++.-. +++|+|+|.+|+||+ .+++++..++||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987664 7899999999999999888 899999999999999 99999999999999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCc-----------------------------eeEEecCCCceEEEEEEccCCCE
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVG-----------------------------SRVDYDAPGLWCTTMLYSADGSR 555 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----------------------------~~~~~~~~~~~v~~~~~s~~g~~ 555 (1131)
|+|.. ..++++|-|.+||+||+.... ....+.+|...|+-++|.|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99877 489999999999999975311 11246778889999999999999
Q ss_pred EEEEeecCCCCceEEEEeCCCCe--eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCC
Q 001178 556 LFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLP 633 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1131)
+++|+. |..|++|.+..-+ .+-+..+|.+ .|.++-|+|..+.+++.++|++|+|||+.....++++.....
T Consensus 221 iVSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend-- 293 (1202)
T KOG0292|consen 221 IVSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND-- 293 (1202)
T ss_pred EEecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--
Confidence 999986 8899999876544 3456778777 899999999999999999999999999999999988865544
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCC
Q 001178 634 SLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPAR 713 (1131)
Q Consensus 634 ~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~ 713 (1131)
....++.+|..++++.| .|+-+.+|.++.. +... ++
T Consensus 294 RFW~laahP~lNLfAAg-HDsGm~VFkleRE-rpa~-------------------------~v----------------- 329 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAG-HDSGMIVFKLERE-RPAY-------------------------AV----------------- 329 (1202)
T ss_pred eEEEEEecCCcceeeee-cCCceEEEEEccc-CceE-------------------------EE-----------------
Confidence 78999999999987766 5555567766532 1100 00
Q ss_pred ccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeee--ccee
Q 001178 714 PSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS--NGVQ 791 (1131)
Q Consensus 714 ~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~--dg~i 791 (1131)
.++.++..- +..++.+++....... ...+........+..++.|+|....++.+++ +|..
T Consensus 330 --------------~~n~LfYvk-d~~i~~~d~~t~~d~~---v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y 391 (1202)
T KOG0292|consen 330 --------------NGNGLFYVK-DRFIRSYDLRTQKDTA---VASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEY 391 (1202)
T ss_pred --------------cCCEEEEEc-cceEEeeeccccccce---eEeccCCCcccCCcceeeeccccCeEEEEeccCCCeE
Confidence 112222222 5677777776633221 2222222224567889999998776666643 4555
Q ss_pred eEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEe
Q 001178 792 KLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFM 871 (1131)
Q Consensus 792 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~ 871 (1131)
.++.+......... + .... .......+-...++-.+..-++..+.+-++.+ +..+.+.
T Consensus 392 ~L~~ipk~~~~~~~---------------~----~~~~--k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~ 449 (1202)
T KOG0292|consen 392 ELVQIPKDSDGVSD---------------G----KDVK--KGTGEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLL 449 (1202)
T ss_pred EEEEecCcccccCC---------------c----hhhh--cCCCCceEEEEecceEEEEecCcceEEecccc-hhhhccc
Confidence 55554332110000 0 0000 11112222222222111111234455555443 2222222
Q ss_pred CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 001178 872 SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEK 951 (1131)
Q Consensus 872 ~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~ 951 (1131)
.. ..+..+-+.- .|.+|.. ....|.+||++..+.+..++ ...|.-+.||+|..+++--+.. +|.|.+.+-.-
T Consensus 450 ~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~Kh-~i~i~~kkL~l- 521 (1202)
T KOG0292|consen 450 LP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLSKH-TITIADKKLEL- 521 (1202)
T ss_pred Cc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhcccc-eEEEEecchhh-
Confidence 21 2334444444 5665543 34579999999888777775 4578899999999888776654 68888755310
Q ss_pred eeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001178 952 RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG 1031 (1131)
Q Consensus 952 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg 1031 (1131)
. ...+....|.+-+|..+|.++.+..+.--+-..-.....++++ ..+|+-.+. .|+.+++-..|+
T Consensus 522 ----~---~sihEtiriksgawde~gVfiYtT~nHikYal~~GD~GIikTL------d~~iyitkv--~gn~V~cl~rd~ 586 (1202)
T KOG0292|consen 522 ----L---CSIHETIRIKSGAWDEDGVFIYTTLNHIKYALENGDSGIIKTL------DKPIYITKV--KGNKVFCLNRDG 586 (1202)
T ss_pred ----e---ecchheeEeeeceeccCceEEEEehhhhhhhhccCCcceEEec------ccceEEEEe--eCCEEEEEecCC
Confidence 0 1112225677889999998888754321111111112223333 234444444 477888888999
Q ss_pred cEEEEECCCC
Q 001178 1032 SIGVFDADSL 1041 (1131)
Q Consensus 1032 ~i~vwd~~~~ 1041 (1131)
.+.+.+++.-
T Consensus 587 ~~~~~~IDpt 596 (1202)
T KOG0292|consen 587 EIECLTIDPT 596 (1202)
T ss_pred CeEEEeechH
Confidence 9999888754
No 29
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=4.8e-33 Score=285.72 Aligned_cols=526 Identities=17% Similarity=0.241 Sum_probs=382.4
Q ss_pred EEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCC
Q 001178 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK 430 (1131)
Q Consensus 351 ~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d 430 (1131)
..+-+-|.|..+..++ +.+.+++++...+. .+.+|+..|.|++.+||.-.+|+|-..
T Consensus 69 ~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr--------------------~y~GH~ddikc~~vHPdri~vatGQ~a 125 (626)
T KOG2106|consen 69 NNLYLLPTGELVYFVA---AVGVLYNWEERSQR--------------------HYLGHNDDIKCMAVHPDRIRVATGQGA 125 (626)
T ss_pred ceeEEccCccEEEEec---cEEEEEeehhhhcc--------------------cccCCCCceEEEeecCCceeeccCccc
Confidence 3455667675333332 35677777543222 367999999999999999999987444
Q ss_pred C--------eEEEEEecCCCccceeeeeecCcCCeeEEEEecCC--CceEEEEEcCCCcEEEEe-CCCceeEEecCCccC
Q 001178 431 H--------LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPN--KQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP 499 (1131)
Q Consensus 431 ~--------~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~--~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~ 499 (1131)
| .+++||..+-. ..+.+..-...|.|++|++-. ..+..+--+.+..+.+|| ..+......+..+..
T Consensus 126 g~~g~~~~phvriWdsv~L~---TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~ 202 (626)
T KOG2106|consen 126 GTSGRPLQPHVRIWDSVTLS---TLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEV 202 (626)
T ss_pred ccCCCcCCCeeeecccccce---eeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccce
Confidence 4 59999976643 334555667789999999843 322333356677899999 777777777777788
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE---ecC-CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD---YDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~---~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
|....|+|... +++++ ...+.+.+|+++.+..... +.. ....|.+++|.++|..+ ++- .+|.|.||+..
T Consensus 203 v~~a~FHPtd~-nliit-~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi-TgD----S~G~i~Iw~~~ 275 (626)
T KOG2106|consen 203 VFLATFHPTDP-NLIIT-CGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI-TGD----SGGNILIWSKG 275 (626)
T ss_pred EEEEEeccCCC-cEEEE-eCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE-eec----CCceEEEEeCC
Confidence 89999998764 44444 4568999999887654432 222 22579999999999865 443 38999999998
Q ss_pred CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCc
Q 001178 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~ 655 (1131)
+.+..+....| ++.|.+++.-.+|. |++|+.|+.|..|| ..-+.++..+.+...+.|..++-...+ +++|...+.
T Consensus 276 ~~~~~k~~~aH-~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~ 350 (626)
T KOG2106|consen 276 TNRISKQVHAH-DGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNF 350 (626)
T ss_pred CceEEeEeeec-CCceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccce
Confidence 88888777754 45899999998876 55599999999999 445555555555555577777644323 777776666
Q ss_pred EEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceecc
Q 001178 656 IKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLE 735 (1131)
Q Consensus 656 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 735 (1131)
|..=.++++. ++.
T Consensus 351 iL~Gt~~~~f-------------------------------~~~------------------------------------ 363 (626)
T KOG2106|consen 351 ILQGTLENGF-------------------------------TLT------------------------------------ 363 (626)
T ss_pred EEEeeecCCc-------------------------------eEE------------------------------------
Confidence 6544443331 000
Q ss_pred ccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeecee
Q 001178 736 DISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQH 815 (1131)
Q Consensus 736 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 815 (1131)
. .+|......++..|+...+++++.|+.+++|+-.. .+
T Consensus 364 ------------------------v---~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~ 401 (626)
T KOG2106|consen 364 ------------------------V---QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LE 401 (626)
T ss_pred ------------------------E---EecccceeeEEcCCChhheeeccCcceEEEccCCc---------------ee
Confidence 0 22666778899999999999999999999997111 23
Q ss_pred ecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEe
Q 001178 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894 (1131)
Q Consensus 816 w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~ 894 (1131)
|.. ....++.|+.|.|.| .+|.|. .|...+.|.++...+..-.. ..++++++|+| +|.+||+|+
T Consensus 402 wt~------------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs 466 (626)
T KOG2106|consen 402 WTK------------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGS 466 (626)
T ss_pred EEE------------EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEec
Confidence 332 247788999999999 888888 89999999999665554444 88999999999 999999999
Q ss_pred CCCcEEEEEeecceeE-Ee-ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee------------eeeecC
Q 001178 895 EDSTIQIYNVRVDEVK-TK-LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS------------IAIQLP 960 (1131)
Q Consensus 895 ~dg~I~iwd~~~~~~~-~~-~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~------------~~~~~~ 960 (1131)
.|+.|+||.+...... .. -+-|..+|+.+.||+|+++|.+.+.|-.|..|.....+.... .-+...
T Consensus 467 ~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~ 546 (626)
T KOG2106|consen 467 HDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVF 546 (626)
T ss_pred CCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEe
Confidence 9999999999754322 22 223348999999999999999999999999994433221111 111222
Q ss_pred CCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 001178 961 AGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 961 ~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
.+.+...+..++-+...++++++. .|.|++|...-.+....+....+|++.|++++|+.+...|.+.+.|.+|..|++
T Consensus 547 g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 547 GGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 233445566667777888888886 589999998766655555555566999999999999999999999999999986
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.7e-35 Score=272.96 Aligned_cols=284 Identities=17% Similarity=0.273 Sum_probs=239.0
Q ss_pred cEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecC
Q 001178 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG 440 (1131)
Q Consensus 361 ~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~ 440 (1131)
-+|++++.|.+|++|...+|.+.+ ++....+.|+.+...||++.||+++. ..|++||+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~r-------------------Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S 70 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSR-------------------TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNS 70 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEE-------------------EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccC
Confidence 489999999999999999999987 34456788999999999999999876 4799999999
Q ss_pred CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecC
Q 001178 441 SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD 520 (1131)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d 520 (1131)
++.. +..++.+|++.|+++.|..||+ +++|||+||+++|||...........|..+|+++..+|.. ..|++|..+
T Consensus 71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQ--teLis~dqs 145 (311)
T KOG0315|consen 71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQ--TELISGDQS 145 (311)
T ss_pred CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCc--ceEEeecCC
Confidence 8754 5668999999999999999999 8999999999999994444445555688999999998755 689999999
Q ss_pred CeEEEEeCCCCceeEEecC-CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC------eeeEEEecccCCceEE
Q 001178 521 GKIKAWLYDNVGSRVDYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG------ALKRTYIGFRKKSAGV 593 (1131)
Q Consensus 521 g~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~------~~~~~~~~~~~~~v~~ 593 (1131)
|.|++||+.+......+.. ....|.++.+.|||.+++.+.. .|+.++|++-++ +++.+++.|.. -+..
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il~ 220 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG-HILR 220 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-eEEE
Confidence 9999999988766554433 3458999999999999999875 899999998654 34566777665 6777
Q ss_pred EEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhc
Q 001178 594 VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIET 673 (1131)
Q Consensus 594 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1131)
+.+||++++|++++.|.+++||+.++. ....+...++...+..++||.||.+|++++.|+.+++|++..+ +.++...+
T Consensus 221 C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~qy~g 298 (311)
T KOG0315|consen 221 CLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQYQG 298 (311)
T ss_pred EEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC-ceeeecCC
Confidence 889999999999999999999999988 3334444455568999999999999999999999999999988 55555555
Q ss_pred ccc
Q 001178 674 RAY 676 (1131)
Q Consensus 674 ~~~ 676 (1131)
|..
T Consensus 299 h~K 301 (311)
T KOG0315|consen 299 HHK 301 (311)
T ss_pred ccc
Confidence 543
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-35 Score=290.72 Aligned_cols=289 Identities=21% Similarity=0.343 Sum_probs=264.5
Q ss_pred eeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 340 ~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
..+..+|..+|+.+-|+|+-. ++++++.|++|++||..+|+... .++||...|..++|+.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~~a 160 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISFDA 160 (406)
T ss_pred hhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEEec
Confidence 344556999999999999986 79999999999999999999865 4889999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
.|++||+++.|-.+++||.++. ..+...+.+|...|.+++|-|.|. +++|++.|.+|+.|+ .+|-++.++.+|..
T Consensus 161 ~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~e 236 (406)
T KOG0295|consen 161 SGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSE 236 (406)
T ss_pred CccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchH
Confidence 9999999999999999999763 344456889999999999999998 899999999999999 99999999999999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccC---------------CCEEEEEeecC
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD---------------GSRLFSCGTSK 563 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~---------------g~~l~~~~~~~ 563 (1131)
.|..+.. ..||.++++++.|.++++|-+.++.+...+..|..+|.+++|.|. +.++.+++.
T Consensus 237 wvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr-- 312 (406)
T KOG0295|consen 237 WVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR-- 312 (406)
T ss_pred hEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc--
Confidence 9999987 578899999999999999999999999999999999999999774 246777765
Q ss_pred CCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
|++|++||+.+|.++.++.+|.+ .|..++|+|.|+||+++.+|+++++||+.++++...+..|.+ -++++.|+.+
T Consensus 313 --DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh~~ 387 (406)
T KOG0295|consen 313 --DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFHKT 387 (406)
T ss_pred --cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecCCC
Confidence 99999999999999999999877 899999999999999999999999999999999999998877 6899999999
Q ss_pred CCEEEEEECCCcEEEEec
Q 001178 644 GNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~ 661 (1131)
..++++|+-|.++++|..
T Consensus 388 ~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 388 APYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CceEEeccccceeeeeec
Confidence 999999999999999974
No 32
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=3.1e-32 Score=279.75 Aligned_cols=524 Identities=16% Similarity=0.199 Sum_probs=375.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC--------cEEEEe-
Q 001178 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--------LIRVWD- 484 (1131)
Q Consensus 414 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~--------~i~iwd- 484 (1131)
.+-+-|.|..+.... +.+.+|+.+...+. -+.+|+..|.|++.+||.- .+++|-.-+ .++|||
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 456777777654432 35667777653211 3679999999999999976 567654333 599999
Q ss_pred CCCceeEEecCCccCeEEEeecccCCccEEEEE--ecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCC-EEEEEee
Q 001178 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST--AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS-RLFSCGT 561 (1131)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~ 561 (1131)
.+-..+..+......|++++|++...|..+..- +.+..+.+||+..+............|....|.|.+. .+++++
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 888888888878889999999998888777665 4566789999998887777777778899999999654 555665
Q ss_pred cCCCCceEEEEeCCCCeeeE---EEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 562 SKEGDSHLVEWNESEGALKR---TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
.+.++.|+.+.+.+.+ .|..+....|.|++|.++|. +++|..+|.|.||+..+.+..+....| ...|.++
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~~L 293 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAH--DGGVFSL 293 (626)
T ss_pred ----CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeec--CCceEEE
Confidence 8899999999886654 35555556799999999876 789999999999999887776666644 4489999
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccc
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l 718 (1131)
+.-.+|.+|- |+.|..|..||- ..+..+..+.
T Consensus 294 ~~lr~GtllS-GgKDRki~~Wd~--~y~k~r~~el--------------------------------------------- 325 (626)
T KOG2106|consen 294 CMLRDGTLLS-GGKDRKIILWDD--NYRKLRETEL--------------------------------------------- 325 (626)
T ss_pred EEecCccEee-cCccceEEeccc--cccccccccC---------------------------------------------
Confidence 9999987655 999999999992 2122111111
Q ss_pred cCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecC
Q 001178 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNR 798 (1131)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 798 (1131)
|+ ..+.|..++-...+ ++++...+.|..=.+
T Consensus 326 ------------------------------------------Pe---~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~-- 356 (626)
T KOG2106|consen 326 ------------------------------------------PE---QFGPIRTVAEGKGD--ILVGTTRNFILQGTL-- 356 (626)
T ss_pred ------------------------------------------ch---hcCCeeEEecCCCc--EEEeeccceEEEeee--
Confidence 11 12222222221111 444444333321111
Q ss_pred CCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCe
Q 001178 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPAS 877 (1131)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i 877 (1131)
+++..+. ..+|......++..|+...+++++ |+.+++|+ ..+++.+.. -..++
T Consensus 357 --------------------~~~f~~~---v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~ 410 (626)
T KOG2106|consen 357 --------------------ENGFTLT---VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPA 410 (626)
T ss_pred --------------------cCCceEE---EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCce
Confidence 1111000 015888999999999999999888 99999999 445544433 35678
Q ss_pred eEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001178 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAI 957 (1131)
Q Consensus 878 ~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~ 957 (1131)
.|+.|+| .| .+|.|+..|...+.|.++...+..-.. ..++++++|+|+|.+||.|+.|+.|++|.++..........
T Consensus 411 ~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~ 487 (626)
T KOG2106|consen 411 ECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG 487 (626)
T ss_pred eEeeccC-cc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence 9999999 77 999999999999999999766655454 88999999999999999999999999999988654443332
Q ss_pred ecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCccccee--------------eec-CCCCCCCeEEEEEccCC
Q 001178 958 QLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQ--------------WVP-QDVLSSPISSAAYSCNS 1021 (1131)
Q Consensus 958 ~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~~~~~~--------------~~~-~~~~~~~v~~i~~s~dg 1021 (1131)
. .+..+++.+.||+|++++.+. .|..|..|....-+.+.. +.. ...++..|..++-+.+.
T Consensus 488 k----~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~ 563 (626)
T KOG2106|consen 488 K----CSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCE 563 (626)
T ss_pred e----ecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhh
Confidence 2 222789999999999999985 488899994432222111 111 12346678888888999
Q ss_pred CEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEec
Q 001178 1022 QLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1022 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~ 1093 (1131)
+++|+|.+.|.|++|.+.--+..+.. +.. ..|++.+. +|+|.-.+ ..|.+.+.|.+|+.|++
T Consensus 564 ~~lA~gdd~g~v~lf~yPc~s~rA~~---he~----~ghs~~vt--~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 564 KLLASGDDFGKVHLFSYPCSSPRAPS---HEY----GGHSSHVT--NVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhccccCceEEEEccccCCCcccc---eee----ccccceeE--EEEEeeCC-ceEEecCCCceEEEEEe
Confidence 99999999999999998755443221 111 22444444 68887755 56666669999999987
No 33
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.9e-34 Score=291.93 Aligned_cols=335 Identities=16% Similarity=0.293 Sum_probs=279.3
Q ss_pred CCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEecC--CCc-----cceeeeeec----CcCCeeEEEEecCCCceEEEEE
Q 001178 407 DSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQG--SND-----LCQSLEIDA----HVGGVNDLAFSYPNKQLCIVTC 474 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~-~las~~~d~~i~vwd~~~--~~~-----~~~~~~~~~----h~~~V~~l~~s~d~~~~~l~s~ 474 (1131)
.|..+|.+++|+|-.. .||+|+.|-+.++|++.. ..+ ++......+ .+..|++++|+.+|. .||+|
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~--~LatG 253 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT--LLATG 253 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC--eEEEe
Confidence 3999999999999666 999999999999999974 111 111111112 235799999999999 89999
Q ss_pred cCCCcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCC
Q 001178 475 GDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS 554 (1131)
Q Consensus 475 s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~ 554 (1131)
+.||.++||+..|..+.++..|.++|.++.|+ ..|.+|++++.||++.+||.-++.....+..+..+-..+.|-.+..
T Consensus 254 ~~~G~~riw~~~G~l~~tl~~HkgPI~slKWn--k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 254 SEDGEARIWNKDGNLISTLGQHKGPIFSLKWN--KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE 331 (524)
T ss_pred ecCcEEEEEecCchhhhhhhccCCceEEEEEc--CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence 99999999999999999999999999999995 5668999999999999999999999988888887766677765554
Q ss_pred EEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCC
Q 001178 555 RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS 634 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1131)
+++++. ++.|+++.+....++.++.+|++ .|.++.|.|.+..|+++++|++++||++........+..|.. .
T Consensus 332 -F~ts~t----d~~i~V~kv~~~~P~~t~~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk--e 403 (524)
T KOG0273|consen 332 -FATSST----DGCIHVCKVGEDRPVKTFIGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK--E 403 (524)
T ss_pred -EeecCC----CceEEEEEecCCCcceeeecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc--c
Confidence 556554 99999999999999999999777 999999999999999999999999999877666666555443 5
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCc
Q 001178 635 LPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARP 714 (1131)
Q Consensus 635 i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~ 714 (1131)
|..+.|+|.|.. .|+.
T Consensus 404 i~t~~wsp~g~v-----------~~n~----------------------------------------------------- 419 (524)
T KOG0273|consen 404 IYTIKWSPTGPV-----------TSNP----------------------------------------------------- 419 (524)
T ss_pred eeeEeecCCCCc-----------cCCC-----------------------------------------------------
Confidence 666666665421 0000
Q ss_pred cccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEE
Q 001178 715 STILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLW 794 (1131)
Q Consensus 715 ~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw 794 (1131)
T Consensus 420 -------------------------------------------------------------------------------- 419 (524)
T KOG0273|consen 420 -------------------------------------------------------------------------------- 419 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCC
Q 001178 795 KWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSP 873 (1131)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~ 873 (1131)
-++..+++++ |++|++||+..+.++.+|..|
T Consensus 420 ------------------------------------------------~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH 451 (524)
T KOG0273|consen 420 ------------------------------------------------NMNLMLASASFDSTVKLWDVESGVPIHTLMKH 451 (524)
T ss_pred ------------------------------------------------cCCceEEEeecCCeEEEEEccCCceeEeeccC
Confidence 0223345555 899999999999999999999
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001178 874 PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 874 ~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
..+|.+++|+| +++++|+|+.||.|.+|+.++++..+...+. +.|..|+|+.+|..|..+-.|+.+++-|+.
T Consensus 452 ~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 452 QEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999 9999999999999999999999999888855 559999999999999999999999998874
No 34
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-34 Score=270.35 Aligned_cols=249 Identities=21% Similarity=0.285 Sum_probs=214.6
Q ss_pred eeccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCCc--cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCc
Q 001178 403 AIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSND--LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479 (1131)
Q Consensus 403 ~~~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~~~--~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~ 479 (1131)
.++++|.+.|+.++..+. ...|.+++.|.++.+|++..... -...+.+.||...|..++.++||+ +.++++.|++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~--~alS~swD~~ 86 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN--FALSASWDGT 86 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--eEEeccccce
Confidence 378999999999999996 56889999999999999976432 123446899999999999999999 8999999999
Q ss_pred EEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC-CceEEEEEEccC--CCE
Q 001178 480 IRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-GLWCTTMLYSAD--GSR 555 (1131)
Q Consensus 480 i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~--g~~ 555 (1131)
+++|| .+|+..+.|.+|...|.+++|++ |...+++|+.|++|++|+.-........... ..+|.++.|+|+ ..+
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~--dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFST--DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecC--CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 99999 88899999999999999999965 4589999999999999998754444333333 779999999998 677
Q ss_pred EEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCc
Q 001178 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i 635 (1131)
+++++. |+.+++||+++.+....+.+|.. .++.++++|||...++|+.||.+.+||++.++.+..+.. ...|
T Consensus 165 Ivs~s~----DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a---~~~v 236 (315)
T KOG0279|consen 165 IVSASW----DKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA---FDIV 236 (315)
T ss_pred EEEccC----CceEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC---CCeE
Confidence 888887 99999999999999999999766 899999999999999999999999999999999887754 3479
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 636 PRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 636 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.+++|+|+...|+.+. +..|+|||+.++
T Consensus 237 ~sl~fspnrywL~~at-~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAAT-ATSIKIWDLESK 264 (315)
T ss_pred eeEEecCCceeEeecc-CCceEEEeccch
Confidence 9999999876665554 556999999877
No 35
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=264.62 Aligned_cols=295 Identities=15% Similarity=0.241 Sum_probs=251.3
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe--eeEEEecccCC
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKK 589 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~ 589 (1131)
-+|++++.|.+||+|...++.+..++......|+.+.+.|+++.|++++ ...|++||++++. ++.+|.+|.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 5889999999999999999999999999999999999999999999997 6789999998765 5889999876
Q ss_pred ceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhh
Q 001178 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALR 669 (1131)
Q Consensus 590 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1131)
.|.++.|..+|+++++|++||+++|||++...+.+.+... .+|+++..+|+...|++|..+|.|++||+.+.. ...
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~-c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENS-CTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCc-ccc
Confidence 7999999999999999999999999999986655555433 489999999999999999999999999987651 111
Q ss_pred hhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecc
Q 001178 670 AIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEI 749 (1131)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~ 749 (1131)
. .
T Consensus 161 ~-------------------------l----------------------------------------------------- 162 (311)
T KOG0315|consen 161 E-------------------------L----------------------------------------------------- 162 (311)
T ss_pred c-------------------------c-----------------------------------------------------
Confidence 0 0
Q ss_pred cCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCC
Q 001178 750 VDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVP 829 (1131)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 829 (1131)
+ ++....|.++.+.|||+.++++.+.|...+|++........ +.-..-.
T Consensus 163 ----------i---Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~------------------l~P~~k~ 211 (311)
T KOG0315|consen 163 ----------I---PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE------------------LEPVHKF 211 (311)
T ss_pred ----------C---CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc------------------ceEhhhe
Confidence 1 11456788999999999999999999999999865221110 0000011
Q ss_pred CCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCc-eeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc
Q 001178 830 ENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1131)
Q Consensus 830 ~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~ 907 (1131)
..|...+..+.+|||+++||+++ |.+++||+.++. +....+.+|...+...+||. |+++|++|+.|+.+++|++..+
T Consensus 212 ~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred ecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccC
Confidence 25889999999999999999998 899999999998 66667889999999999999 9999999999999999999999
Q ss_pred eeEEeecccccCeeEEEEc
Q 001178 908 EVKTKLKGHQKHITGLAFS 926 (1131)
Q Consensus 908 ~~~~~~~~h~~~V~~l~~s 926 (1131)
+.+....+|..+..|++..
T Consensus 291 k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 291 KEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ceeeecCCcccccEEEEee
Confidence 9999999999988888764
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.5e-33 Score=275.61 Aligned_cols=338 Identities=17% Similarity=0.257 Sum_probs=284.8
Q ss_pred eeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEe
Q 001178 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWL 527 (1131)
Q Consensus 449 ~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd 527 (1131)
.|..|++.|.+++.+|+.+ +++|||.|....+|+ .+|..+..+.+|...|+++.|+ .+|.+|+||..+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc--cCceEEEecCCCccEEEEE
Confidence 6889999999999999777 899999999999999 8889999999999999999995 5678999999999999999
Q ss_pred CCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE
Q 001178 528 YDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 607 (1131)
..++.....+......+.-+.|+|.+..|+.++. ||.+++|.+.++...+.+.+|.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999988777778999999999999999986 99999999999888899999655 899999999999999999
Q ss_pred cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccc
Q 001178 608 EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKV 687 (1131)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1131)
.||+|++||..++.++..+....+ ....++.++..+..++.|+.++.+.+-+..+++ .+...
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~---------------- 271 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCN---------------- 271 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccce-EEEec----------------
Confidence 999999999999999988875543 257889999999999999999998887655441 00000
Q ss_pred cCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCc
Q 001178 688 PGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSA 767 (1131)
Q Consensus 688 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 767 (1131)
.
T Consensus 272 ---------n---------------------------------------------------------------------- 272 (399)
T KOG0296|consen 272 ---------N---------------------------------------------------------------------- 272 (399)
T ss_pred ---------C----------------------------------------------------------------------
Confidence 0
Q ss_pred cceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCE
Q 001178 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1131)
+.+..+-. -.......|.++.++..-.+
T Consensus 273 ---------~~~~~l~~-------------------------------------------~~e~~~esve~~~~ss~lpL 300 (399)
T KOG0296|consen 273 ---------GTVPELKP-------------------------------------------SQEELDESVESIPSSSKLPL 300 (399)
T ss_pred ---------CCCccccc-------------------------------------------cchhhhhhhhhcccccccch
Confidence 00000000 00012334455566667778
Q ss_pred EEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEc
Q 001178 848 VMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFS 926 (1131)
Q Consensus 848 la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 926 (1131)
.|+|+ ||+|.|||+...+....+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.||..+|.+++++
T Consensus 301 ~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls 377 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS 377 (399)
T ss_pred hhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEc
Confidence 88998 9999999999876665554 677799999986 4688899999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcC
Q 001178 927 TNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 927 ~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
|+.++++|+|.|++.++++..
T Consensus 378 ~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 378 PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999864
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.7e-32 Score=293.76 Aligned_cols=556 Identities=16% Similarity=0.249 Sum_probs=376.1
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+...+..|..++|+|..-+++++-..|.|++||.+-+.++. .+..|.++|..++|+|++. +++|||+|-.|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34557789999999999999999999999999999887665 6889999999999999999 999999999999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
.+.+++.++.||-+.|..+.||..- .+|+++|+|.+|+||++.+.+++..+.+|.+.|.|..|.|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 8899999999999999999998644 79999999999999999999999999999999999999999999999997
Q ss_pred CCCceEEEEeCCCCe-----------------------------eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEE
Q 001178 564 EGDSHLVEWNESEGA-----------------------------LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF 614 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 614 (1131)
|.+|++||+..-+ ....+.||.. .|+.++|+|.-..+++|++|+.|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 8999999985211 1123456544 8999999999999999999999999
Q ss_pred EEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCcccee
Q 001178 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVT 694 (1131)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1131)
|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||+... ..++.+...... .-+.
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrendR-------------FW~l 298 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRRENDR-------------FWIL 298 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeeccCCe-------------EEEE
Confidence 99987665544445566669999999999999999999999999999776 333333221111 1111
Q ss_pred cccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEE
Q 001178 695 TITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLL 774 (1131)
Q Consensus 695 ~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 774 (1131)
+..|. --++.++.|+-+.+|.+... .+ +.+
T Consensus 299 aahP~------------------------------lNLfAAgHDsGm~VFkleRE------------------rp--a~~ 328 (1202)
T KOG0292|consen 299 AAHPE------------------------------LNLFAAGHDSGMIVFKLERE------------------RP--AYA 328 (1202)
T ss_pred EecCC------------------------------cceeeeecCCceEEEEEccc------------------Cc--eEE
Confidence 22222 12344455555666665421 11 112
Q ss_pred eecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--
Q 001178 775 YTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-- 852 (1131)
Q Consensus 775 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-- 852 (1131)
. ++..|...- +..|+.+|+.+....+ ......++..-.++.++.++|....+..++
T Consensus 329 v--~~n~LfYvk-d~~i~~~d~~t~~d~~-------------------v~~lr~~g~~~~~~~smsYNpae~~vlics~~ 386 (1202)
T KOG0292|consen 329 V--NGNGLFYVK-DRFIRSYDLRTQKDTA-------------------VASLRRPGTLWQPPRSLSYNPAENAVLICSNL 386 (1202)
T ss_pred E--cCCEEEEEc-cceEEeeeccccccce-------------------eEeccCCCcccCCcceeeeccccCeEEEEecc
Confidence 2 233333333 6666666665421110 000011112346788999999877666664
Q ss_pred -CCeEEEEECCCceeEEEE-e--CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccC
Q 001178 853 -GGKVSLFNMMNFKVMTTF-M--SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN 928 (1131)
Q Consensus 853 -dg~i~vwd~~~~~~~~~~-~--~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 928 (1131)
.++-.++.+.....-..- . .......++-... +++.+.--.+..+.+=++.+.. ...+.-. ..+..+-+.-+
T Consensus 387 ~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvar--Nrfavl~k~~~~v~ik~l~N~v-tkkl~~~-~~~~~IF~ag~ 462 (1202)
T KOG0292|consen 387 DNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVAR--NRFAVLDKSNEQVVIKNLKNKV-TKKLLLP-ESTDDIFYAGT 462 (1202)
T ss_pred CCCeEEEEEecCcccccCCchhhhcCCCCceEEEEe--cceEEEEecCcceEEecccchh-hhcccCc-ccccceeeccC
Confidence 355556655432111000 0 0011122222222 2222222224445554444322 2222211 23445556666
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCC
Q 001178 929 LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL 1008 (1131)
Q Consensus 929 g~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 1008 (1131)
|.+|+.. ...|.++|++..+....... ..+.-+.||+|..+++.-+...|.|++.+ .+.+..+..
T Consensus 463 g~lll~~--~~~v~lfdvQq~~~~~si~~--------s~vkyvvws~dm~~vAll~Kh~i~i~~kk-L~l~~sihE---- 527 (1202)
T KOG0292|consen 463 GNLLLRS--PDSVTLFDVQQKKKVGSIKV--------SKVKYVVWSNDMSRVALLSKHTITIADKK-LELLCSIHE---- 527 (1202)
T ss_pred ccEEEEc--CCeEEEEEeecceEEEEEec--------CceeEEEEcCccchhhhcccceEEEEecc-hhheecchh----
Confidence 6666543 34699999998665444333 67889999999999998888889998865 333333221
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc--eeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCC
Q 001178 1009 SSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR--LRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG 1086 (1131)
Q Consensus 1009 ~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg 1086 (1131)
.-.|.+-+|..+|-+|.+... .|+ |-+.+|. .+.++. .+++.+.+ .++.+..-..|+
T Consensus 528 tiriksgawde~gVfiYtT~n--Hik-Yal~~GD~GIikTLd-------------~~iyitkv-----~gn~V~cl~rd~ 586 (1202)
T KOG0292|consen 528 TIRIKSGAWDEDGVFIYTTLN--HIK-YALENGDSGIIKTLD-------------KPIYITKV-----KGNKVFCLNRDG 586 (1202)
T ss_pred eeEeeeceeccCceEEEEehh--hhh-hhhccCCcceEEecc-------------cceEEEEe-----eCCEEEEEecCC
Confidence 457888899988888888763 222 3333332 222222 23444444 467888888899
Q ss_pred cEEEEecCCCcc
Q 001178 1087 SVKVIEPSETER 1098 (1131)
Q Consensus 1087 ~v~iW~~~~~~~ 1098 (1131)
.+....+.-.|-
T Consensus 587 ~~~~~~IDptEy 598 (1202)
T KOG0292|consen 587 EIECLTIDPTEY 598 (1202)
T ss_pred CeEEEeechHHH
Confidence 998888765553
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.1e-35 Score=293.00 Aligned_cols=282 Identities=20% Similarity=0.295 Sum_probs=248.0
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
-+..|..|.|.|+|++ |++|+..|.+.+|+..+-... .++..|..+|.++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~fnFE-------------------tilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSFNFE-------------------TILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCceeeHH-------------------HHhhhhcccceeEEEccCCCEEE
Confidence 4568999999999997 889999999999997432111 15779999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCc-CCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
+|+.+|.|++|+..-.. ++ .+.+|. ..|++++|+|.+. .+++|++|++|+||| ...+.-..+.+|...|.++
T Consensus 155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 99999999999986543 22 345554 8999999999888 799999999999999 7777778889999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
+|+|.. ..|+++|.|..|++||.+++.++..+..|...|..+.|++++++|++++. |..++++|+++.+.++.+
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHh
Confidence 999876 58999999999999999999999999999999999999999999999987 889999999998999999
Q ss_pred ecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 584 IGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
++|.. .+.++.|+|-. ..|.+|+.||.|..|.+...+++..+. ..+...|.+++|+|-|.+|++|+.|.++++|.-
T Consensus 303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99887 89999999965 577789999999999998666655543 345568999999999999999999999999974
No 39
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=272.35 Aligned_cols=329 Identities=16% Similarity=0.194 Sum_probs=279.7
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+..|+++|.+++.+|+.+++|+|+.|....+|++.+|... ..+.+|...|+++.|+.||. +|+||+.+|.|+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~---~eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA---GELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF 133 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce---eEecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence 57799999999999999999999999999999999999844 47899999999999999999 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
. .++.....+...-..+.-+.|||. +.+|++|+.||.+-+|.+.+......+.+|..++++=.|.|+|++++++..
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~- 210 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD- 210 (399)
T ss_pred EcccCceEEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-
Confidence 9 888888888766677888999874 479999999999999999998888889999999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc---------CCCC
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE---------GGLP 633 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~ 633 (1131)
+++|++|+..+++++..+.+.......++.++..+..++.|+.++.+++-+..+|+.+...... ....
T Consensus 211 ---dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 211 ---DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred ---CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 9999999999999999988777777888999999999999999999999999999887776521 1111
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCC
Q 001178 634 SLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPAR 713 (1131)
Q Consensus 634 ~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~ 713 (1131)
.|.++.++..-++.|+|+-||+|.|||+.... ++.
T Consensus 288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R~------------------------------------------- 322 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVDGTIAIYDLAAST--LRH------------------------------------------- 322 (399)
T ss_pred hhhhcccccccchhhcccccceEEEEecccch--hhe-------------------------------------------
Confidence 23344444455667777777777777764320 000
Q ss_pred ccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeE
Q 001178 714 PSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKL 793 (1131)
Q Consensus 714 ~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 793 (1131)
T Consensus 323 -------------------------------------------------------------------------------- 322 (399)
T KOG0296|consen 323 -------------------------------------------------------------------------------- 322 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeC
Q 001178 794 WKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMS 872 (1131)
Q Consensus 794 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~ 872 (1131)
.. .|...|..+.|-+ ..+|++++ +|+|+.||..+|+++.++.+
T Consensus 323 ---------------------------------~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 323 ---------------------------------IC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred ---------------------------------ec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence 00 3677788888888 55666666 99999999999999999999
Q ss_pred CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEee
Q 001178 873 PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR 905 (1131)
Q Consensus 873 ~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~ 905 (1131)
|...|.+++++| +.+++++++.|++.+||+..
T Consensus 367 H~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999 89999999999999999864
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=277.74 Aligned_cols=292 Identities=18% Similarity=0.292 Sum_probs=258.0
Q ss_pred cceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 338 RAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 338 ~~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
-.+.+.+ +|.+.|.|+++.|-+. .+++|+.|++|.|||+.+|+... ++.||-..|..++
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkl-------------------tltGhi~~vr~va 200 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKL-------------------TLTGHIETVRGVA 200 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEE-------------------eecchhheeeeee
Confidence 3445555 4999999999999987 59999999999999999998765 5889999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecC
Q 001178 417 WSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG 495 (1131)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~ 495 (1131)
+|+--.||.+++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|++|+.|.++|||| .+...+..+.|
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecC
Confidence 99999999999999999999999987666 6789999999999999888 899999999999999 78888999999
Q ss_pred CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
|..+|.++.+.+.+ ..+++||.|++|++||+..++....+..|...+.+++.+|....+++++ ...|.-|++.
T Consensus 276 H~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-----~dnik~w~~p 348 (460)
T KOG0285|consen 276 HTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-----PDNIKQWKLP 348 (460)
T ss_pred CCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-----CccceeccCC
Confidence 99999999986544 5799999999999999999999999999999999999999999999987 4579999999
Q ss_pred CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec---c---CCCCCcceEEEcCCCCEEEE
Q 001178 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA---E---GGLPSLPRLRFNKEGNLLVV 649 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~~~i~~v~~sp~~~~l~~ 649 (1131)
.|..+..+.+|.. .+++++...|+ ++++|+++|.+.+||.++|...+.... . .....|.+.+|...|..|++
T Consensus 349 ~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit 426 (460)
T KOG0285|consen 349 EGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLIT 426 (460)
T ss_pred ccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEe
Confidence 9999999888766 89999888664 889999999999999999865554421 1 12235889999999999999
Q ss_pred EECCCcEEEEecCC
Q 001178 650 TTADQGIKILANAD 663 (1131)
Q Consensus 650 ~~~dg~i~iw~~~~ 663 (1131)
|..|.+|++|.-..
T Consensus 427 ~eadKtIk~~keDe 440 (460)
T KOG0285|consen 427 GEADKTIKMYKEDE 440 (460)
T ss_pred ccCCcceEEEeccc
Confidence 99999999997543
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=261.71 Aligned_cols=285 Identities=20% Similarity=0.326 Sum_probs=234.8
Q ss_pred cCCCcEEEEEEecC-CCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 345 HQGSSVVSMDFHPF-HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 345 ~h~~~V~~~~fspd-g~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
+|++.|+.++|+|- |. +||+|+.|..|+||+...+....- ...+-.+|+..|.++||+|.|++
T Consensus 12 gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~g~~ 75 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPHGRY 75 (312)
T ss_pred CCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCCCcE
Confidence 49999999999998 76 899999999999999985332110 11234589999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CC---CceeEEecCCccC
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LS---GRKLFQFEGHEAP 499 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~---~~~~~~~~~h~~~ 499 (1131)
||+|+.|.++.||.-..++ +....++.||...|.+++|+++|. +||+|+.|+.|-||. .. -.++..+.+|...
T Consensus 76 La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred EEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 9999999999999987654 556678999999999999999999 899999999999999 32 2467789999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEeCCC---CceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
|..+.|+|+. .+|+++|.|++|++|+-.. -.....+.+|...|.+++|++.|..|++++. ++++.||-..+
T Consensus 153 VK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~Iw~~~~ 226 (312)
T KOG0645|consen 153 VKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVSIWRLYT 226 (312)
T ss_pred ccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceEeeeecc
Confidence 9999999887 5999999999999997663 2346688888889999999999999999986 99999998552
Q ss_pred CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe------EEEEEeccCCCCCcceEEEcCC-CCEEEE
Q 001178 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN------MLTSTEAEGGLPSLPRLRFNKE-GNLLVV 649 (1131)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~i~~v~~sp~-~~~l~~ 649 (1131)
.+...+...+..+.|. ...|++++.|+.|++|.-...- .+.. ..+.|...|+++.|+|. .++|++
T Consensus 227 -----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p~~~~~L~s 298 (312)
T KOG0645|consen 227 -----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNPKVSNRLAS 298 (312)
T ss_pred -----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcCCCCCceee
Confidence 3344455578889997 5689999999999999765421 1111 12234448999999994 788999
Q ss_pred EECCCcEEEEecC
Q 001178 650 TTADQGIKILANA 662 (1131)
Q Consensus 650 ~~~dg~i~iw~~~ 662 (1131)
++.||.+++|.+.
T Consensus 299 ~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 299 GGDDGIVNFWELE 311 (312)
T ss_pred cCCCceEEEEEec
Confidence 9999999999864
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4e-33 Score=268.85 Aligned_cols=285 Identities=19% Similarity=0.253 Sum_probs=245.5
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
..+|+++|+.+.|+|+|. ++|+|+.|..|.+|++.....-. .++++|++.|..+.|.+|+.
T Consensus 43 l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~s 103 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDGS 103 (338)
T ss_pred cCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCCC
Confidence 346999999999999998 69999999999999976433221 15779999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeE
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~ 501 (1131)
.|++++.|++|+.||+++|++.+ .+.+|..-|++++-+.-|.. ++.|++.|+++++|| .+...++++. ....++
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqlt 178 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLT 178 (338)
T ss_pred EEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEE
Confidence 99999999999999999998765 57899999999996666666 789999999999999 5566666654 456789
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC----C
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE----G 577 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~----~ 577 (1131)
++.|. ..+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+. +.++++||.+. .
T Consensus 179 Av~f~--d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 179 AVGFK--DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQ 252 (338)
T ss_pred EEEec--ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCC
Confidence 99885 45578999999999999999999999999999999999999999999999887 99999999874 3
Q ss_pred eeeEEEecccCC---ceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCC
Q 001178 578 ALKRTYIGFRKK---SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1131)
Q Consensus 578 ~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg 654 (1131)
+++..+.++... ....++|+|++..+-+|+.|..+++||......+..+++|.. .|+++.|+|...++.+++.|.
T Consensus 253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCc
Confidence 457777765321 234578999999999999999999999999888888876655 899999999999999999999
Q ss_pred cEEEE
Q 001178 655 GIKIL 659 (1131)
Q Consensus 655 ~i~iw 659 (1131)
+|.+=
T Consensus 331 ~i~lg 335 (338)
T KOG0265|consen 331 TIYLG 335 (338)
T ss_pred eeEee
Confidence 98864
No 43
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-29 Score=271.40 Aligned_cols=550 Identities=14% Similarity=0.146 Sum_probs=385.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCc-CCeeEEEEecCCCceEEEEEcCCCcEEEEe-C
Q 001178 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L 485 (1131)
Q Consensus 408 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 485 (1131)
-...|.+||||.+.+.||.+-.||.|.+|++..+=... ..+.++. ..|.+++|++.++ |+|.+.+|.|.-|| .
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence 35689999999999999999999999999999864333 3566654 5899999996665 89999999999999 9
Q ss_pred CCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE--EecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV--DYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
+++.+..+....+.|++++.+|.. ..++.|+.||.+..++...+.... .+....+.+.++.|+|++..++.|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999998765 689999999977777776655444 33445578999999999999999987
Q ss_pred CCCceEEEEeCCCCeeeEEEe-------cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcc
Q 001178 564 EGDSHLVEWNESEGALKRTYI-------GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 636 (1131)
||.|++||...+..+.... ......|.++.|-.+ ..+++|...|+|.+||...+.+++....+.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 9999999999988766221 112224677777754 5799999999999999999999988887765 799
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccc
Q 001178 637 RLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPST 716 (1131)
Q Consensus 637 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~ 716 (1131)
+++..+++.++++++.|+.+..|...+....
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------------------------------------------- 280 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------------------------------------------- 280 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc-------------------------------------------------
Confidence 9999999999999999999988876554210
Q ss_pred cccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEee
Q 001178 717 ILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKW 796 (1131)
Q Consensus 717 ~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 796 (1131)
|-... ....|...+.++++.++ .+++++.|.++.+-..
T Consensus 281 ---------------------------wv~~~-------------~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 281 ---------------------------WVINS-------------RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred ---------------------------eeeec-------------cccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 11100 00237778888888877 7888999988866432
Q ss_pred cCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCce---------eE
Q 001178 797 NRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFK---------VM 867 (1131)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~---------~~ 867 (1131)
.... ..+ .. +...+ .... -+...+..++++.-....+.+|.+.+.. +.
T Consensus 319 ~~~~--------------~~~---h~-~~~~~---p~~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Ll 375 (691)
T KOG2048|consen 319 REFK--------------NMD---HR-QKNLF---PASD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLL 375 (691)
T ss_pred cccC--------------chh---hh-ccccc---cccc--eeecCccceEEEEeccccccceeccCcccccccChhhhe
Confidence 2100 000 00 00000 0111 1233445555555557778888876541 12
Q ss_pred EEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeE-----EeecccccCeeEEEEccCCCEEEEEe-CCCcE
Q 001178 868 TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK-----TKLKGHQKHITGLAFSTNLNILVSSG-SDAQL 941 (1131)
Q Consensus 868 ~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~-----~~~~~h~~~V~~l~~s~dg~~l~s~~-~Dg~v 941 (1131)
+........|.|.+.|| +|++||.++- ..++||.+...-.+ .....-.-..+.+.|+-|++.++.++ .+..+
T Consensus 376 kl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~l 453 (691)
T KOG2048|consen 376 KLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSL 453 (691)
T ss_pred eeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEeccccee
Confidence 22223456799999999 9999998764 46788887642222 12233344678899999999888888 67888
Q ss_pred EEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEcc-
Q 001178 942 IFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC- 1019 (1131)
Q Consensus 942 ~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~- 1019 (1131)
...++++........++.. .....++.++.||+|+++++. ..+.|.+|++.+++........ ...|++++|+|
T Consensus 454 e~~el~~ps~kel~~~~~~--~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl---n~~vTa~~~~~~ 528 (691)
T KOG2048|consen 454 EEFELETPSFKELKSIQSQ--AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL---NIDVTAAAFSPF 528 (691)
T ss_pred EEEEecCcchhhhhccccc--cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc---Ccceeeeecccc
Confidence 8888887554333222222 223789999999999999984 6899999999987765544333 57899999995
Q ss_pred CCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1020 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
+-..|+.+..|+.++-||++..++ .+.........++.-.+-.-....+.|+|.++..+++-+ .+-+.+.|..
T Consensus 529 ~~~~lvvats~nQv~efdi~~~~l-~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~-a~w~~~id~~ 601 (691)
T KOG2048|consen 529 VRNRLVVATSNNQVFEFDIEARNL-TRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYD-AHWSCLIDFS 601 (691)
T ss_pred ccCcEEEEecCCeEEEEecchhhh-hhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEc-CcEEEEEecC
Confidence 556888888999999999954331 111111100000000011111235778887766666554 3345565654
No 44
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.5e-33 Score=256.58 Aligned_cols=287 Identities=16% Similarity=0.242 Sum_probs=247.8
Q ss_pred ccceeeecc-CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEE
Q 001178 337 PRAVACTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRV 415 (1131)
Q Consensus 337 ~~~~~~~~~-h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 415 (1131)
|....+++. |.++|.++.|+-||+| ..+++.|.+|++|+...|.+++ ++.+|...|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~lik-------------------tYsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIK-------------------TYSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceee-------------------eecCCCceeeec
Confidence 444455554 8999999999999997 6667789999999999999887 588999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe---CCCceeEE
Q 001178 416 AWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD---LSGRKLFQ 492 (1131)
Q Consensus 416 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd---~~~~~~~~ 492 (1131)
+.+.|...+++|+.|+.|.+||+.+|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++|| .+-++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999998766 6899999999999999998 899999999999999 45678888
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEE
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 572 (1131)
+......|.++.+.. ..|++|+.||+++.||++.++..... -+.+|+++.|++|++..+.++. ++.+++.
T Consensus 141 ldea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLL 210 (307)
T ss_pred hhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeec
Confidence 988889999998743 67999999999999999987766544 3457999999999999999887 8999999
Q ss_pred eCCCCeeeEEEecccCCceE-EEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEE
Q 001178 573 NESEGALKRTYIGFRKKSAG-VVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT 651 (1131)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~ 651 (1131)
|-.+|++++.+.+|.+.... .++++....++++|++||.+++||+.....+..+..++.. .+.+++++|.-..++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v-~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV-IVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce-eEEeeecccCccceeEec
Confidence 99999999999999875443 3667777789999999999999999999999888877652 478999999877777775
Q ss_pred CCCcEEEEe
Q 001178 652 ADQGIKILA 660 (1131)
Q Consensus 652 ~dg~i~iw~ 660 (1131)
.. .+..|.
T Consensus 290 ~~-~~~~~~ 297 (307)
T KOG0316|consen 290 GH-GDLFWY 297 (307)
T ss_pred CC-ceecee
Confidence 44 455554
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=270.56 Aligned_cols=245 Identities=19% Similarity=0.312 Sum_probs=224.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
++.+|.++|.|+++.|-..++++|+.|++|+|||+.+|+.. .++.||-..|..+++|+-.. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk---ltltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK---LTLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE---EeecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 68899999999999999999999999999999999998743 37899999999999999888 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
| ...+.++.+.||-..|.|++.+|.- +.|++|+.|.++++||+++......+.+|..+|.++.+.|-...+++++.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 9 8888999999999999999998876 58999999999999999999999999999999999999998899999987
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
|++|++||+..|+...++..|.. .+.+++.+|....+++++.|. |+-|++..|..+..+..+.. .|++++.+.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~--iintl~~ns 370 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNA--IINTLSVNS 370 (460)
T ss_pred ---CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccc--eeeeeeecc
Confidence 99999999999999888887665 899999999999999988874 89999999999888765544 688999888
Q ss_pred CCCEEEEEECCCcEEEEecCCC
Q 001178 643 EGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
|+ ++++|+++|.+.+||..++
T Consensus 371 D~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcC
Confidence 76 7888999999999999888
No 46
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-32 Score=271.31 Aligned_cols=300 Identities=15% Similarity=0.314 Sum_probs=267.0
Q ss_pred eeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEe
Q 001178 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWL 527 (1131)
Q Consensus 449 ~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd 527 (1131)
.+.+|..+|+.+-|.|+-. ++++++.|.+|++|| .+|+....++||...|..+.|+ ..|+++++++.|-.+++||
T Consensus 103 ~l~g~r~~vt~v~~hp~~~--~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~--a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEA--LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFD--ASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred hhhccccceeeeeeccCce--EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEe--cCccEEEecCCccchhhee
Confidence 4678999999999999988 899999999999999 9999999999999999999985 4568999999999999999
Q ss_pred CCC-CceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEE
Q 001178 528 YDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA 606 (1131)
Q Consensus 528 ~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 606 (1131)
.++ ..++....+|...|.++.|-|.|.++++++. |.+|+.|+..+|.++.+|.+|.. .+..+..+.||..++++
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr----D~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR----DNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGTIIASC 253 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeeccc----ccceeEEecccceeEEeccCchH-hEEEEEecCCeeEEEec
Confidence 987 4555677788899999999999999999997 89999999999999999999887 89999999999999999
Q ss_pred EcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhcccccccccccccc
Q 001178 607 GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMK 686 (1131)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1131)
+.|.+|++|-+.++++...+..|.+ +|.+++|.|... +.. +.+
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~--~~~-------i~~-------------------------- 296 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEH--PVECIAWAPESS--YPS-------ISE-------------------------- 296 (406)
T ss_pred CCCceEEEEEeccchhhhhhhcccc--ceEEEEeccccc--Ccc-------hhh--------------------------
Confidence 9999999999999988888887777 788998887532 000 000
Q ss_pred ccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCC
Q 001178 687 VPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDS 766 (1131)
Q Consensus 687 ~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 766 (1131)
T Consensus 297 -------------------------------------------------------------------------------- 296 (406)
T KOG0295|consen 297 -------------------------------------------------------------------------------- 296 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCC
Q 001178 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1131)
++ +... .+.
T Consensus 297 ----------------at----------------------------------------------~~~~---------~~~ 305 (406)
T KOG0295|consen 297 ----------------AT----------------------------------------------GSTN---------GGQ 305 (406)
T ss_pred ----------------cc----------------------------------------------CCCC---------Ccc
Confidence 00 0000 456
Q ss_pred EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEE
Q 001178 847 YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAF 925 (1131)
Q Consensus 847 ~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 925 (1131)
++.+++ |++|++||+.++.++.++.+|.+.|..++|+| +|++|+++.+|+++++||+.++++...+..|..-|+++.|
T Consensus 306 ~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 306 VLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF 384 (406)
T ss_pred EEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence 788888 89999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEc
Q 001178 926 STNLNILVSSGSDAQLIFWNT 946 (1131)
Q Consensus 926 s~dg~~l~s~~~Dg~v~lwd~ 946 (1131)
..+..+++||+-|.++++|.-
T Consensus 385 h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCCceEEeccccceeeeeec
Confidence 999999999999999999963
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.5e-32 Score=307.40 Aligned_cols=284 Identities=23% Similarity=0.374 Sum_probs=249.0
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCc--ccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRE--RLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
+...|.|+.|||+|+. +++++.|+.+++|+..+++ ... .+.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 5889999999999995 9999999999999997666 322 35799999999999999999
Q ss_pred EEEEeCCCeEEEEEec-CCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeE
Q 001178 424 IGVAFTKHLIHLYTYQ-GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 424 las~~~d~~i~vwd~~-~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~ 501 (1131)
+++++.|++|+|||+. .+.++ +++.+|...|++++|+|+|+ ++++|+.|++|+||| .+++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~---~~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNL---KTLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEE---EEecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 9999999999999994 33433 47889999999999999997 899999999999999 77899999999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCce--eEEecCCCc--eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGL--WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1131)
+++|. +++.+|++++.|+.|++||+.++.. ...+..+.. .++++.|+|++.++++++. ++.+++||+..+
T Consensus 293 ~~~f~--~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFS--PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEEC--CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 99995 5668999999999999999999883 344444433 5999999999999999986 889999999999
Q ss_pred eeeEEEecccCC--ceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEE--CC
Q 001178 578 ALKRTYIGFRKK--SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT--AD 653 (1131)
Q Consensus 578 ~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~--~d 653 (1131)
..+..+.+|... .+.....++.+.++++|+.|+.|++||..++..+..+..|. ...+..+.++|..+++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999998875 34445567789999999999999999999999888888774 44789999999999999998 68
Q ss_pred CcEEEEec
Q 001178 654 QGIKILAN 661 (1131)
Q Consensus 654 g~i~iw~~ 661 (1131)
+.+++|..
T Consensus 446 ~~~~~w~~ 453 (456)
T KOG0266|consen 446 GLIRLWKY 453 (456)
T ss_pred ceEEEecC
Confidence 99999975
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.7e-33 Score=270.68 Aligned_cols=274 Identities=23% Similarity=0.314 Sum_probs=233.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
..+.|+|+.+..+ .+++|..|++|+|||.++.++++ ++.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeecc--ceEEE
Confidence 5678999998643 48999999999999999988876 588999999999984 56999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCc---eeEEecCCccCeE
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR---KLFQFEGHEAPVY 501 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~---~~~~~~~h~~~v~ 501 (1131)
+|+.|.+|+|||+++|+++. ++.+|...|..+.|+.. +++|++.|.++.+|| .+.. +...+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999876 67899999999999843 799999999999999 3332 2345779999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeE
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 581 (1131)
.+.|. .+++++++.|.+|++|++.+.+....+.+|...|.++.+ .|+++++|+. |.+|++||+..|.+++
T Consensus 325 vVdfd----~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDFD----DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eeccc----cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 99873 269999999999999999999999999999999988877 4788888886 9999999999999999
Q ss_pred EEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEE-------EeccCCCCCcceEEEcCCCCEEEEEECCC
Q 001178 582 TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTS-------TEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1131)
Q Consensus 582 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg 654 (1131)
.+.||.. -|.++.| +.+.+++|+.||+|++||+..+..... ...-.+.+.|..+.|. ...+++++.|.
T Consensus 395 vLeGHEe-LvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCC
Confidence 9999877 8999999 567899999999999999987643211 1112334467888885 56789999999
Q ss_pred cEEEEecCCCc
Q 001178 655 GIKILANADGL 665 (1131)
Q Consensus 655 ~i~iw~~~~~~ 665 (1131)
+|.|||+.++.
T Consensus 470 tILiWdFl~~~ 480 (499)
T KOG0281|consen 470 TILIWDFLNGP 480 (499)
T ss_pred eEEEEEcCCCC
Confidence 99999998773
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.3e-31 Score=254.26 Aligned_cols=249 Identities=18% Similarity=0.323 Sum_probs=216.5
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+.+|.++|..+.|.+|+. .++++|.|++++.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 577999999999999999999999999999999976543 23446889999999999999999 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
| .+|++++++++|..-|++++.. .-+..++.+++.|+++++||++.......+. ....++++.|..++..+.+++-
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI- 194 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI- 194 (338)
T ss_pred ecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc-
Confidence 9 9999999999999999999743 2233577789999999999999877766553 3456999999999999999998
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC----eEEEEEeccCCCC--Ccc
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV----NMLTSTEAEGGLP--SLP 636 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~--~i~ 636 (1131)
|+.|++||++.......+.+|.+ +|+.+..+++|.++.+-+.|.++++||++.. .++..+..+.+.- ...
T Consensus 195 ---dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 195 ---DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred ---cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 88999999999999999999887 9999999999999999999999999998753 3466666554432 345
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEecCC
Q 001178 637 RLRFNKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 637 ~v~~sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
.++|+|++..+..|+.|..+++||...
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred eeeccCCCCccccccccceEEEeeccc
Confidence 789999999999999999999999654
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.2e-30 Score=244.39 Aligned_cols=242 Identities=16% Similarity=0.290 Sum_probs=206.5
Q ss_pred eccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCCccceeeee-ecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 404 IVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSNDLCQSLEI-DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~-~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
.+.+|.+.|..++|+|- |..||+|+.|+.|++|+..++........+ .+|+..|++++|+|.|+ +|+++|.|.++.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEE
Confidence 57899999999999998 999999999999999999864444333333 47999999999999999 899999999999
Q ss_pred EEe-C--CCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc---eeEEecCCCceEEEEEEccCCCE
Q 001178 482 VWD-L--SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG---SRVDYDAPGLWCTTMLYSADGSR 555 (1131)
Q Consensus 482 iwd-~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~g~~ 555 (1131)
||. . +-+++.++.||...|.+++|+ .+|.+|++++.|+.|-+|.++... ....+..|...|..+.|+|...+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws--~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWS--ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEc--CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 998 3 346788999999999999995 566899999999999999987543 44578889999999999999999
Q ss_pred EEEEeecCCCCceEEEEeCC---CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCC
Q 001178 556 LFSCGTSKEGDSHLVEWNES---EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1131)
|++++. |.+|++|.-. .-.+++++.+|++ .+.+++|++.|..|+++++|++++||...+. + ...+.
T Consensus 165 L~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~-~~~~s 233 (312)
T KOG0645|consen 165 LFSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----L-SGMHS 233 (312)
T ss_pred eEEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC-----c-chhcc
Confidence 999998 9999999866 2357889999877 8999999999999999999999999986532 1 12233
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 633 PSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 633 ~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
..++.++|. ...+++++.|+.|++|.-.
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEec
Confidence 478889998 4579999999999999754
No 51
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5.5e-31 Score=264.00 Aligned_cols=291 Identities=18% Similarity=0.285 Sum_probs=230.0
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
++..|.+.|..+.||++|+|||+++.|.+..+|++.....++..+++.+|..+|..+.||||++ ++++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 6889999999999999999999999999999999988777777889999999999999999999 79999999999999
Q ss_pred e-CCCceeEEec-CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEee
Q 001178 484 D-LSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 484 d-~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
| .+|.....+. +|...+.+++|.| ||..+++|+.|+++..||++
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlD-------------------------------- 342 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLD-------------------------------- 342 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCC--------------------------------
Confidence 9 7777665553 2334555555533 33445555555555555442
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1131)
|.......+.....|..+++++||+++++.+.|..|++++..+......+..+. +|++.+.|
T Consensus 343 ---------------gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its~~iS 404 (519)
T KOG0293|consen 343 ---------------GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITSFSIS 404 (519)
T ss_pred ---------------cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeEEEEc
Confidence 223333333344468889999999999999999999999998876665554433 79999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCC
Q 001178 642 KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGA 721 (1131)
Q Consensus 642 p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~ 721 (1131)
.+++++++.-.+..+++||++.. ..++.+.||...
T Consensus 405 ~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~-------------------------------------------- 439 (519)
T KOG0293|consen 405 KDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQG-------------------------------------------- 439 (519)
T ss_pred CCCcEEEEEcccCeeEEeecchh-hHHHHhhccccc--------------------------------------------
Confidence 99999999999999999999855 555554443211
Q ss_pred CccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCC
Q 001178 722 DSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ 801 (1131)
Q Consensus 722 ~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 801 (1131)
.+++
T Consensus 440 ----------------------------------------------------------~fiI------------------ 443 (519)
T KOG0293|consen 440 ----------------------------------------------------------HFII------------------ 443 (519)
T ss_pred ----------------------------------------------------------ceEE------------------
Confidence 1111
Q ss_pred CCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEec-CCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeE
Q 001178 802 NPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS-KNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTF 879 (1131)
Q Consensus 802 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s-~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 879 (1131)
.-||- .+.+++++|+ |++|+||+..+++++..+.+|...|.|
T Consensus 444 ------------------------------------rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNc 487 (519)
T KOG0293|consen 444 ------------------------------------RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNC 487 (519)
T ss_pred ------------------------------------EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeE
Confidence 11221 2457899999 899999999999999999999999999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEEee
Q 001178 880 LAFHPQDNNIIAIGMEDSTIQIYNVR 905 (1131)
Q Consensus 880 l~~s~~~~~~la~g~~dg~I~iwd~~ 905 (1131)
++|+|.+..++|+|++||+|+||...
T Consensus 488 VswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 488 VSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred EecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999999999999999999865
No 52
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=1.7e-31 Score=291.50 Aligned_cols=245 Identities=19% Similarity=0.362 Sum_probs=225.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCC--------cc--------------------ceeeeeecCcCCeeEE
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN--------DL--------------------CQSLEIDAHVGGVNDL 460 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~--------~~--------------------~~~~~~~~h~~~V~~l 460 (1131)
...++|..||+|+..||.|..|..|++|.+...+ .+ ....++.||.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 4579999999999999999999999999987421 00 1224588999999999
Q ss_pred EEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC
Q 001178 461 AFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539 (1131)
Q Consensus 461 ~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 539 (1131)
.|+|+.+ +|++||.|+++|+|. .+..++..++||..||+.+.|+| .|-+++|+|.|++-++|..+.......+.+
T Consensus 458 sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 458 SFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhhhcc
Confidence 9999999 899999999999999 88889999999999999999974 568999999999999999999999999999
Q ss_pred CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 540 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
|-..|.|+.|+|+..|+++++. |.++++||..+|..++.|.||+. +|.+++|+|+|.+|++|++||.|.+||+.+
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred cccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 9999999999999999999987 99999999999999999999877 999999999999999999999999999999
Q ss_pred CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++++..+..|. ..|.++.|+.+|..||+|+.|.+|++||+...
T Consensus 609 ~~~v~~l~~Ht--~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 609 GSLVKQLKGHT--GTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred Ccchhhhhccc--CceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999988774 48999999999999999999999999998654
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=4.6e-32 Score=278.38 Aligned_cols=291 Identities=17% Similarity=0.260 Sum_probs=245.8
Q ss_pred ccceeeec-cCCCcEEEEEEec-CCCcEEEEEcCCCeEEEEECCC-CcccccccceeecccccccceeceeccCCCCCEE
Q 001178 337 PRAVACTM-HQGSSVVSMDFHP-FHHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS 413 (1131)
Q Consensus 337 ~~~~~~~~-~h~~~V~~~~fsp-dg~~llasg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 413 (1131)
|...++++ +|+..|+++.|.| .+ .||++|+.|+.|+||++.. +++++ ++.||..+|.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~-hLlLS~gmD~~vklW~vy~~~~~lr-------------------tf~gH~k~Vr 262 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYDDRRCLR-------------------TFKGHRKPVR 262 (503)
T ss_pred cHhheeeccCCccccchhhhcccee-eEEEecCCCceEEEEEEecCcceeh-------------------hhhcchhhhh
Confidence 55566666 4999999999999 56 5899999999999999987 66665 5889999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEE
Q 001178 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQ 492 (1131)
Q Consensus 414 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 492 (1131)
.++|+++|..+.+++.|+.|++||+++|+++.. +. ....++|+.|.||+.. .+++|+.|+.|+.|| .+++.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 999999999999999999999999999987652 21 2446899999999955 899999999999999 89999999
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE-ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
+..|-+.|..+.|. +++..+++.++|+.+++|+.+..-.+.. .........++..+|++.+++.-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 99999999999985 5668999999999999999987665542 2333446789999999999998876 889999
Q ss_pred EeCCCC---eeeEEEecccCCce-EEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC-CCE
Q 001178 572 WNESEG---ALKRTYIGFRKKSA-GVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE-GNL 646 (1131)
Q Consensus 572 wd~~~~---~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~-~~~ 646 (1131)
+.+... ...+.|.+|..... ..+.|||||.+|++|..||.+.+||.++-+.+..++.|.. .+..+.|+|. ...
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 986542 23345677654433 3489999999999999999999999999999999887744 7899999994 567
Q ss_pred EEEEECCCcEEEEe
Q 001178 647 LVVTTADQGIKILA 660 (1131)
Q Consensus 647 l~~~~~dg~i~iw~ 660 (1131)
+|+++.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 89999999999996
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=4.4e-30 Score=293.30 Aligned_cols=291 Identities=27% Similarity=0.416 Sum_probs=246.8
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
+...|.++.|+++|..+++++.++.+++|+...... .+.. .+ .+|...|.+++|+||+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------~~~~-~l-~~h~~~v~~~~fs~d~ 215 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------NLLR-EL-SGHTRGVSDVAFSPDG 215 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------hhhc-cc-cccccceeeeEECCCC
Confidence 467889999999999999999999999998633211 0111 11 3699999999999999
Q ss_pred CEEEEEe-CCeEEEEEC-CCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEE
Q 001178 846 SYVMSAG-GGKVSLFNM-MNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGL 923 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 923 (1131)
+++++++ |++|+|||+ ..+.+++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|+++
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~ 294 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGL 294 (456)
T ss_pred cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEE
Confidence 9999999 899999999 66699999999999999999999 67999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCC-CceEEEEcCCCcEEEEEe-CCeEEEEeCCCccccee
Q 001178 924 AFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPV-GETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQ 1001 (1131)
Q Consensus 924 ~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~-~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~ 1001 (1131)
+|++|+++|++++.|+.|++||+.++... +.......... .+..++|+|++.+++++. |+.+++||+..+..+..
T Consensus 295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred EECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 99999999999999999999999998754 22233333323 789999999999999976 67999999999999999
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEE
Q 001178 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAV 1081 (1131)
Q Consensus 1002 ~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s 1081 (1131)
+.+|......+.+..++++++++++|+.|+.|++|++.++..+..+.++. . -....+.++| .++++++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~---------~--~~~~~~~~~~-~~~~~~s 439 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS---------K--AAVSDLSSHP-TENLIAS 439 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC---------C--CceeccccCC-CcCeeee
Confidence 98885322366677778899999999999999999999999999888763 0 1123577888 5679999
Q ss_pred Ee--cCCcEEEEecC
Q 001178 1082 GL--TDGSVKVIEPS 1094 (1131)
Q Consensus 1082 ~~--~Dg~v~iW~~~ 1094 (1131)
++ .|+.+++|...
T Consensus 440 ~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 440 SSFEGDGLIRLWKYD 454 (456)
T ss_pred cCcCCCceEEEecCC
Confidence 98 79999999864
No 55
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=3.1e-27 Score=252.80 Aligned_cols=498 Identities=14% Similarity=0.160 Sum_probs=350.9
Q ss_pred cCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCce-eEEecCC-ccCeEEEeecccCCccEEEEEecCCeEEEEeCCC
Q 001178 454 VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK-LFQFEGH-EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN 530 (1131)
Q Consensus 454 ~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~-~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~ 530 (1131)
..+|.++||+.+.+ .||.+-.||.|-||+ ..+-. ...+.++ ...|.+++|. ++..|++.+.+|.|.-||+-+
T Consensus 25 Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEeccc
Confidence 45699999999999 689999999999999 43332 2345554 4679999997 346899999999999999999
Q ss_pred CceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEe-cccCCceEEEEEeCCCCEEEEEEcC
Q 001178 531 VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI-GFRKKSAGVVQFDTTRNRILAAGED 609 (1131)
Q Consensus 531 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d 609 (1131)
.+.+..+...++.|.+++.+|.+..++.++. +|.++.++...++...... ....+.+.++.|+|++..+++|+.|
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 9999999999999999999999999999986 7888888887777654322 2233589999999999999999999
Q ss_pred CcEEEEEcCCCeEEEEEecc-----C-CCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccc
Q 001178 610 NQIKFWDMDNVNMLTSTEAE-----G-GLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRAST 683 (1131)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~-----~-~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1131)
|.|++||...+..+...... . ...-|.++.|-.++ .+++|...|+|.+||...+ .+.+.+
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-TLiqS~------------ 241 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-TLIQSH------------ 241 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-chhhhh------------
Confidence 99999999998877632211 1 22235666666554 6889999999999998777 222211
Q ss_pred cccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCC
Q 001178 684 EMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPES 763 (1131)
Q Consensus 684 ~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~ 763 (1131)
T Consensus 242 -------------------------------------------------------------------------------- 241 (691)
T KOG2048|consen 242 -------------------------------------------------------------------------------- 241 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC
Q 001178 764 TDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK 843 (1131)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~ 843 (1131)
..|...|.+++..++++++++++-|+.+..|...+.... |- .......|...+++++..+
T Consensus 242 ~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------wv-------~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 242 SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------WV-------INSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------ee-------eeccccCCcccceeeeeec
Confidence 126778889999999999999999999887765542110 11 1112236889999999988
Q ss_pred CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeE-EEEeCCCCcEEEEEeCCCcEEEEEeecce---------eEEe
Q 001178 844 NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTF-LAFHPQDNNIIAIGMEDSTIQIYNVRVDE---------VKTK 912 (1131)
Q Consensus 844 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~-l~~s~~~~~~la~g~~dg~I~iwd~~~~~---------~~~~ 912 (1131)
+ .+++|+ |.++.+-.....+...-......+-.+ +...| .++|..--.+..+.+|.+-+.. +.+.
T Consensus 302 ~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl 377 (691)
T KOG2048|consen 302 N--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKL 377 (691)
T ss_pred c--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccChhhheee
Confidence 7 677777 777777655432111111000001111 22233 3344444456677888775541 1122
Q ss_pred ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE--eCCeEEE
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAI 990 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~--~d~~i~v 990 (1131)
.......|.+.+.||||++++.+.-. .+++|.++............... ..-.+..+.|+-|+..++.. ....+.+
T Consensus 378 ~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~-~~~~a~~i~ftid~~k~~~~s~~~~~le~ 455 (691)
T KOG2048|consen 378 FTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPL-ALLDASAISFTIDKNKLFLVSKNIFSLEE 455 (691)
T ss_pred ecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchh-hhccceeeEEEecCceEEEEecccceeEE
Confidence 22234569999999999999987643 57888887633222222111111 11367788899888877664 4677888
Q ss_pred EeCCCc--ccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEE
Q 001178 991 YDGSKM--ECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLV 1068 (1131)
Q Consensus 991 wd~~~~--~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1068 (1131)
+++.+. +....+... .....|+.+..|+||+|||+.+.+|.|.+|++++++......... .....
T Consensus 456 ~el~~ps~kel~~~~~~-~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln------------~~vTa 522 (691)
T KOG2048|consen 456 FELETPSFKELKSIQSQ-AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLN------------IDVTA 522 (691)
T ss_pred EEecCcchhhhhccccc-cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccC------------cceee
Confidence 877653 333333222 225789999999999999999999999999999988665543222 23346
Q ss_pred EEEcCCCCCeEEEEecCCcEEEEec
Q 001178 1069 VTSHPQEPNQLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1069 v~~~p~~~~~l~s~~~Dg~v~iW~~ 1093 (1131)
..|+|..-+.|+.+..|+.+.-||+
T Consensus 523 ~~~~~~~~~~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 523 AAFSPFVRNRLVVATSNNQVFEFDI 547 (691)
T ss_pred eeccccccCcEEEEecCCeEEEEec
Confidence 7888777789999999999999999
No 56
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=1.1e-29 Score=267.02 Aligned_cols=638 Identities=17% Similarity=0.232 Sum_probs=350.9
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.|++.|+.+.|||-...|||+|+.|..|+||.+..|-... .......+.+..-.|-|+.|+|...-|
T Consensus 77 ~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fHpTaDgi 143 (1012)
T KOG1445|consen 77 AHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFHPTADGI 143 (1012)
T ss_pred cccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecccCcCce
Confidence 4999999999999877799999999999999997432111 001122455666788999999977666
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccC-eE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAP-VY 501 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~-v~ 501 (1131)
...+..|+++|||+.+++.+ .++.+|...|.+..|+.||+ ++++++.|+.|+||| ..++.++...+|.+. -.
T Consensus 144 l~s~a~g~v~i~D~stqk~~---~el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~~~rds 218 (1012)
T KOG1445|consen 144 LASGAHGSVYITDISTQKTA---VELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDS 218 (1012)
T ss_pred EEeccCceEEEEEcccCcee---ecccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccccccchhh
Confidence 66667899999999998754 47899999999999999999 899999999999999 788899998999764 23
Q ss_pred EEeecccCCccEEEEEecC----CeEEEEeCCCCceeE---EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC
Q 001178 502 SVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGSRV---DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
.+.|. ++-..|++.+.+ ..|++||.+...... ++... ..|.--.|.||.++|+.++. ++.+++.+.+
T Consensus 219 Rv~w~--Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~s-tGvLiPl~DpDt~llfLaGK---G~~~l~~lE~ 292 (1012)
T KOG1445|consen 219 RVLWA--GNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSS-TGVLIPLYDPDTRLLFLAGK---GTNKLFMLEM 292 (1012)
T ss_pred eeeec--cchhhhhhcccchhhheeeeeeeccccCCcceeEEeecc-cceEeeeecCCCceEEEecC---CcceEEEEEe
Confidence 34443 332456665544 578999987654432 33322 24666678999999998875 4778888877
Q ss_pred CCCeeeE--EEecccCCceEEEEEeCCCCEEEEEEc-CCcEE--------------------------------------
Q 001178 575 SEGALKR--TYIGFRKKSAGVVQFDTTRNRILAAGE-DNQIK-------------------------------------- 613 (1131)
Q Consensus 575 ~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~-------------------------------------- 613 (1131)
...+... .+...-.......++-|....-+..++ +..+.
T Consensus 293 ~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~a 372 (1012)
T KOG1445|consen 293 QDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTA 372 (1012)
T ss_pred cCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCc
Confidence 6543211 111000000011111111110000000 00000
Q ss_pred -EEEcCCCeEEEEEe------ccCCC----------------CCcceEEEcCCCCEEEEEECCCcEEE---EecCCCchh
Q 001178 614 -FWDMDNVNMLTSTE------AEGGL----------------PSLPRLRFNKEGNLLVVTTADQGIKI---LANADGLRA 667 (1131)
Q Consensus 614 -iwd~~~~~~~~~~~------~~~~~----------------~~i~~v~~sp~~~~l~~~~~dg~i~i---w~~~~~~~~ 667 (1131)
-|=-.+.+.+.... .|+.. .++......|...--.....|..-.+ =.+.++ ..
T Consensus 373 geWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~-~e 451 (1012)
T KOG1445|consen 373 GEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKK-EE 451 (1012)
T ss_pred cceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcc-hh
Confidence 01000111111110 00000 00000000000000000000000000 000000 01
Q ss_pred hhhhhccccccccc------cccc--cccCccceeccccccccccc---------c----------cCCCCCCccccccC
Q 001178 668 LRAIETRAYETSRA------STEM--KVPGSAVVTTITPVLSKAER---------V----------DRSSPARPSTILNG 720 (1131)
Q Consensus 668 ~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~sp~~~~~~~---------~----------~~~~~~~~~~~l~~ 720 (1131)
.+.+.....+.... .... ....... .++|..-.... . .+..+.++..-+.
T Consensus 452 ~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s--~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g- 528 (1012)
T KOG1445|consen 452 VRELDYRPYEKENGVHTPNADADSTQGNSSPIS--TISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFG- 528 (1012)
T ss_pred hhhhcccccccccCccCCCcccccccCCCCCcc--ccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccC-
Confidence 11110000000000 0000 0000000 00000000000 0 0000000000000
Q ss_pred CCccccCCCCceecccc------CCCCcceeeecccCCceeEE-EEcCC-CCCCccceEEEEeecCCceEE--Eeeecce
Q 001178 721 ADSAARGIEKPRNLEDI------SDKTKPWELTEIVDPLQCRV-VAMPE-STDSASKVARLLYTNSGIGIL--ALWSNGV 790 (1131)
Q Consensus 721 ~~~~~~~~~~~~~~~~~------d~~v~~w~~~~~~~~~~~~~-~~~~~-~~~~~~~i~~l~~s~~g~~l~--~~~~dg~ 790 (1131)
...+.......+.+. -|.+.-|.-.......+... ..+.+ ...-.+....+ ..+...++ ..+..|.
T Consensus 529 --~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGf--can~~rvAVPL~g~gG~ 604 (1012)
T KOG1445|consen 529 --KPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGF--CANNKRVAVPLAGSGGV 604 (1012)
T ss_pred --CCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCce--eeccceEEEEecCCCce
Confidence 000000000000000 01111111100000000000 00000 00011111222 22333333 3456799
Q ss_pred eeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC-CCCEEEEEe-CCeEEEEECCCc----
Q 001178 791 QKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK-NDSYVMSAG-GGKVSLFNMMNF---- 864 (1131)
Q Consensus 791 i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~-dg~~la~~~-dg~i~vwd~~~~---- 864 (1131)
|.||+++.....|++....- .....|+.+.|.| |...||++. ||.|++|.+..+
T Consensus 605 iai~el~~PGrLPDgv~p~l--------------------~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 605 IAIYELNEPGRLPDGVMPGL--------------------FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred EEEEEcCCCCCCCccccccc--------------------ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence 99999988777776642211 2466788999988 667888888 799999998754
Q ss_pred ---eeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcE
Q 001178 865 ---KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQL 941 (1131)
Q Consensus 865 ---~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v 941 (1131)
+....+..|...|+++.|+|-...+||+++.|.+|++||+.+++....+.+|++.|.+++|||||+.+|+.+.||+|
T Consensus 665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL 744 (1012)
T ss_pred ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceE
Confidence 34456778999999999999778899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-----eCCeEEEEeCCCcc--cceeeecCCCCCCCeEE
Q 001178 942 IFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-----HETQLAIYDGSKME--CIRQWVPQDVLSSPISS 1014 (1131)
Q Consensus 942 ~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-----~d~~i~vwd~~~~~--~~~~~~~~~~~~~~v~~ 1014 (1131)
++|+..+++. .+....+..+.....+.|.-||+++++. +...|.+||..+.. .+......- .-.+.-
T Consensus 745 rVy~Prs~e~----pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv--aps~Lv 818 (1012)
T KOG1445|consen 745 RVYEPRSREQ----PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV--APSPLV 818 (1012)
T ss_pred EEeCCCCCCC----ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc--cCcccc
Confidence 9999988653 2333333333566788999999998873 35679999987643 222211110 112222
Q ss_pred EEEccCCC-EEEEEecCCcEEEEECCC
Q 001178 1015 AAYSCNSQ-LIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 1015 i~~s~dg~-~l~s~~~dg~i~vwd~~~ 1040 (1131)
-.+.+|.. ++++|-.|..|++|.+--
T Consensus 819 P~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 819 PHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred ccccCCCceEEEecCCCceEEEEEecC
Confidence 23455666 455666889999998754
No 57
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.3e-31 Score=268.68 Aligned_cols=284 Identities=15% Similarity=0.243 Sum_probs=247.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCc
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR 488 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 488 (1131)
...|..+.|.|+|+.|++|+..|.+.+|+..+-. -...+++|..+|+++.|+++|. +++||..+|.|++|+..-.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn---FEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN---FETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee---HHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccchh
Confidence 4579999999999999999999999999985422 1123678999999999999999 8999999999999997767
Q ss_pred eeEEecCCc-cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCc
Q 001178 489 KLFQFEGHE-APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1131)
Q Consensus 489 ~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 567 (1131)
.+..+.+|. ..|++++|+|. ...++++++||+|+|||....+....+.+|+-.|.++.|+|.-..+++++. |.
T Consensus 171 nVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk----Dn 244 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK----DN 244 (464)
T ss_pred hhHHhhHhhhhhhheeccCCC--CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----Cc
Confidence 777776665 89999999873 368999999999999999999888889999999999999999999999986 77
Q ss_pred eEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC-CCCE
Q 001178 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNL 646 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~ 646 (1131)
.|++||.++|.++.++.+|.+ .|..+.|++++++|++++.|..++++|+++.+.+.....|.. .++++.|+| ...+
T Consensus 245 lVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESL 321 (464)
T ss_pred eeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeeccccccccc
Confidence 999999999999999999877 899999999999999999999999999998888888776654 799999999 6678
Q ss_pred EEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCcccc
Q 001178 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAAR 726 (1131)
Q Consensus 647 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 726 (1131)
|.+|+.||.|..|.+.... .+..
T Consensus 322 ftsgg~Dgsvvh~~v~~~~-p~~~-------------------------------------------------------- 344 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVGLEE-PLGE-------------------------------------------------------- 344 (464)
T ss_pred eeeccCCCceEEEeccccc-cccC--------------------------------------------------------
Confidence 8999999999999875220 0000
Q ss_pred CCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecC
Q 001178 727 GIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNR 798 (1131)
Q Consensus 727 ~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 798 (1131)
. ..+|...|.+++|.|-|..|++++.|.++++|.-..
T Consensus 345 ----------------------------------i-~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 345 ----------------------------------I-PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ----------------------------------C-CcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 0 034889999999999999999999999999997544
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2e-29 Score=276.57 Aligned_cols=282 Identities=26% Similarity=0.422 Sum_probs=248.3
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+|.++|++++|+|+++ ++++|+.||.|++|++.+++... .+..|...+.++.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence 4999999999999998 58889999999999998876443 356888999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
++++.|+.|++||+.+++... .+..|...|.++.|+++++ ++++++.|+.+++|| .+++.+..+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999865443 5678998999999999977 788888899999999 6688888888999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
+|++. +.++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+.+||..+++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 99765 578888888999999999988888788888889999999999999999875 889999999998888888
Q ss_pred ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
..+.. .+.++.|++++.++++++.||.|++|++.+++....+..+. ..+.+++|+|+++++++++.||.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 66555 89999999998888888889999999999988888877443 3799999999999999999999999996
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=9.4e-31 Score=268.77 Aligned_cols=287 Identities=18% Similarity=0.282 Sum_probs=243.1
Q ss_pred CCCccceEEEEeec-CCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEec
Q 001178 764 TDSASKVARLLYTN-SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS 842 (1131)
Q Consensus 764 ~~~~~~i~~l~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s 842 (1131)
.+|...|.++.|.| .+..+++++.|+.|++|++ |+ .+.+++... +|..+|..++|+
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~v-------------------y~--~~~~lrtf~--gH~k~Vrd~~~s 267 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNV-------------------YD--DRRCLRTFK--GHRKPVRDASFN 267 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEE-------------------ec--Ccceehhhh--cchhhhhhhhcc
Confidence 45999999999999 8899999999999999974 33 344444333 799999999999
Q ss_pred CCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCee
Q 001178 843 KNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT 921 (1131)
Q Consensus 843 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~ 921 (1131)
.+|..+.+++ |+.|++||+++|+++..+.. ...++|+.|.|++.+.+++|+.|+.|+.||+++++.++.+..|-+.|.
T Consensus 268 ~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~ 346 (503)
T KOG0282|consen 268 NCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL 346 (503)
T ss_pred ccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee
Confidence 9999999999 99999999999999999974 567899999996668999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCC---cc
Q 001178 922 GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSK---ME 997 (1131)
Q Consensus 922 ~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~---~~ 997 (1131)
.+.|-++|+++++.+.|++++||+....-..... .........++..+|.+.++++- -|..|.+|.+.. ..
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i-----~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI-----ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcCCCccchhh-----cchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence 9999999999999999999999999875432221 11122456789999999999984 599999998764 33
Q ss_pred cceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCC
Q 001178 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPN 1077 (1131)
Q Consensus 998 ~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~ 1077 (1131)
..+.+.+|.. .+.-..+.|||||++|++|+.||.+.+||..+-++++.+..+. -.++.+.|+|..+.
T Consensus 422 kkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~------------~~ci~v~wHP~e~S 488 (503)
T KOG0282|consen 422 KKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD------------QPCIGVDWHPVEPS 488 (503)
T ss_pred Hhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC------------cceEEEEecCCCcc
Confidence 4445556543 5566789999999999999999999999999999998887543 23457999999999
Q ss_pred eEEEEecCCcEEEEe
Q 001178 1078 QLAVGLTDGSVKVIE 1092 (1131)
Q Consensus 1078 ~l~s~~~Dg~v~iW~ 1092 (1131)
.+|++|.||.|++|+
T Consensus 489 kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 489 KVATCGWDGLIKIWD 503 (503)
T ss_pred eeEecccCceeEecC
Confidence 999999999999996
No 60
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=244.73 Aligned_cols=284 Identities=19% Similarity=0.245 Sum_probs=250.1
Q ss_pred ccCCCcEEEEEEec---CCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 344 MHQGSSVVSMDFHP---FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 344 ~~h~~~V~~~~fsp---dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
-+|+.+|..++||| +| ++|++++.||.--+-+=++|.-+. ++.||.+.|.+..+..|
T Consensus 11 ~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwig-------------------tfeghkgavw~~~l~~n 70 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIG-------------------TFEGHKGAVWSATLNKN 70 (334)
T ss_pred cCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEE-------------------eeeccCcceeeeecCch
Confidence 46999999999995 67 689999999998888888888776 58899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCcc
Q 001178 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEA 498 (1131)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~ 498 (1131)
..+.|+++.|-+.+|||.-+|..+. . ..|..-|.+++|+.|.. +|++|+.++.+||+| ....+...+.+|.+
T Consensus 71 a~~aasaaadftakvw~a~tgdelh---s-f~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ghtg 144 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTGDELH---S-FEHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGHTG 144 (334)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhh---h-hhhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCCCC
Confidence 9999999999999999999998775 3 35888999999999999 799999999999999 44456788999999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
.|..+-|.... +.|++.+.|++||+||.+++.....+... .+|+++.++++|++|.++- .+.|..||..+..
T Consensus 145 ~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 145 GIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFG 216 (334)
T ss_pred cceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEecccccc
Confidence 99999997544 68889899999999999999888877644 4699999999999988774 6689999999999
Q ss_pred eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001178 579 LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658 (1131)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~i 658 (1131)
+++.+.... .|.+...+|+...+++|++|+.++.||..+++.+... ..++..+|.|+.|+|+|...++|+.||+|++
T Consensus 217 ~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 217 LLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred ceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 999888644 5888999999999999999999999999999988875 2344558999999999999999999999999
Q ss_pred EecCCC
Q 001178 659 LANADG 664 (1131)
Q Consensus 659 w~~~~~ 664 (1131)
|....+
T Consensus 294 WQt~~~ 299 (334)
T KOG0278|consen 294 WQTTPG 299 (334)
T ss_pred EEecCC
Confidence 998665
No 61
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=253.14 Aligned_cols=293 Identities=19% Similarity=0.278 Sum_probs=243.8
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
....+.+..|||||.++++++-||.|.+|+..++....+-+..+. ...+ -+...|.|+.||.|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~fM-------Mmd~aVlci~FSRDs 275 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DNFM-------MMDDAVLCISFSRDS 275 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------ccee-------ecccceEEEeecccH
Confidence 345677899999999999999999999999887765544332221 1111 268899999999999
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEEe-CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEE
Q 001178 846 SYVMSAG-GGKVSLFNMMNFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGL 923 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 923 (1131)
..+|+|+ ||+|++|.+.+|.|++.|. .|...|+|+.||. |+..+.+++.|.++++--+.+|+++..++||++-|+..
T Consensus 276 EMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 276 EMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA 354 (508)
T ss_pred HHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccce
Confidence 9999999 9999999999999999998 8999999999999 77888899999999999999999999999999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCC--cEEEEEeCCeEEEEeCCCccccee
Q 001178 924 AFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ--VRLLVNHETQLAIYDGSKMECIRQ 1001 (1131)
Q Consensus 924 ~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~--~~l~~~~d~~i~vwd~~~~~~~~~ 1001 (1131)
.|++||.++++++.||+|++|+.++.++...... ....-++..+..-|.+ .++++...++++|.++. |+.++.
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~----~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrs 429 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP----LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRS 429 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchhhhhhccC----CCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEee
Confidence 9999999999999999999999999887554322 1123566666666643 35556678899998876 777777
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEE
Q 001178 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAV 1081 (1131)
Q Consensus 1002 ~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s 1081 (1131)
+....-..+...+.+.||.|.++.+.++|+.++.|.+.+|++...+..+. ..++.+..+| ..++|++
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE------------kdvIGl~HHP-HqNllAs 496 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE------------KDVIGLTHHP-HQNLLAS 496 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc------------ccccccccCc-ccchhhh
Confidence 76655456777888999999999999999999999999999888877544 3345688888 5689999
Q ss_pred EecCCcEEEEec
Q 001178 1082 GLTDGSVKVIEP 1093 (1131)
Q Consensus 1082 ~~~Dg~v~iW~~ 1093 (1131)
-++||.+++|..
T Consensus 497 YsEDgllKLWkp 508 (508)
T KOG0275|consen 497 YSEDGLLKLWKP 508 (508)
T ss_pred hcccchhhhcCC
Confidence 999999999963
No 62
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.2e-28 Score=224.26 Aligned_cols=311 Identities=18% Similarity=0.231 Sum_probs=242.4
Q ss_pred ceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 339 ~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
+.+.+++.+..|.+++|+|.|. +.|+|+...+.+|-....-..++.. -......+....+-.+.|.+.|.|.+||
T Consensus 24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEec
Confidence 4566788899999999999998 7999999999998865432222100 0000011122233467899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecC--CCccceeeeeecCcCCeeEEEEecCCC--ceEEEEEc-CCCcEEEEe-CCCceeEE
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQG--SNDLCQSLEIDAHVGGVNDLAFSYPNK--QLCIVTCG-DDKLIRVWD-LSGRKLFQ 492 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~--~~~~~~~~~~~~h~~~V~~l~~s~d~~--~~~l~s~s-~d~~i~iwd-~~~~~~~~ 492 (1131)
|+|.+||+|+.|++|++.-... ........++.-|.+.|..++|..+.. ..+|++++ .|..|++-| ..|+....
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 9999999999999999976544 333344456888999999999976521 12666655 588888889 99999999
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC-------CCceEEEEEEccCCCEEEEEeecCCC
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-------PGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
+.+|++-|.++- +-++.++++|+.|.+|++||++-......+.. ....|.++++.|.|++|+++..
T Consensus 179 ~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~---- 251 (350)
T KOG0641|consen 179 LSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA---- 251 (350)
T ss_pred ecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC----
Confidence 999999998875 23457999999999999999988776664432 2247999999999999999976
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC--eEEEEEeccCCCCCcceEEEcCC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
|....+||++.++.++.|..|.. .|.++.|+|...++++++.|..|++-|+... ..+..+-...+...+..+.|+|.
T Consensus 252 dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 252 DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc
Confidence 88899999999999999998766 8999999999999999999999999998642 11222222234447788999999
Q ss_pred CCEEEEEECCCcEEEEecC
Q 001178 644 GNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~ 662 (1131)
.-.+++.+.|.++.+|.+.
T Consensus 331 d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 DFSFISSSADKTATLWALN 349 (350)
T ss_pred cceeeeccCcceEEEeccC
Confidence 9899999999999999763
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.9e-28 Score=302.89 Aligned_cols=291 Identities=14% Similarity=0.185 Sum_probs=234.7
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~ 423 (1131)
.|...|++++|+|+|+ ++|+|+.|++|+|||+.+...... .. ......+ .+...|.+++|+| ++.+
T Consensus 481 ~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~~----------~~~~~~~-~~~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 481 NSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-DI----------HYPVVEL-ASRSKLSGICWNSYIKSQ 547 (793)
T ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-cc----------ccceEEe-cccCceeeEEeccCCCCE
Confidence 4899999999999998 599999999999999864211100 00 0000012 2346899999988 5789
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEec-CCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~ 501 (1131)
||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++|| .++..+..+..+ ..|.
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 9999999999999999876443 6789999999999997 667 899999999999999 778888888754 6788
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCc-eeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC----
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE---- 576 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~---- 576 (1131)
++.|.+ +++.++++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 622 ~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 622 CVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISG 695 (793)
T ss_pred EEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCccc
Confidence 998854 457899999999999999998765 355677888899999997 7888999886 89999999874
Q ss_pred --CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEe-----------ccCCCCCcceEEEcCC
Q 001178 577 --GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE-----------AEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 577 --~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~i~~v~~sp~ 643 (1131)
...+..+.+|.. .+.+++|++++++|++|+.|+.|++|+......+.... ...+...|.+++|+|+
T Consensus 696 ~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 696 INETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred cCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 356778888765 78899999999999999999999999987654443221 1222335899999999
Q ss_pred CCEEEEEECCCcEEEEec
Q 001178 644 GNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~ 661 (1131)
+..|++|+.+|.|+||++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999986
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.1e-29 Score=254.89 Aligned_cols=281 Identities=21% Similarity=0.299 Sum_probs=237.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
..+.|++++|||...+=+|+.+ .-.+.||+..+....+ .+......|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeEEE
Confidence 5578999999996654344443 3489999998877665 2445577899999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCC-ceeEEecCCccCeEEEe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG-RKLFQFEGHEAPVYSVC 504 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~h~~~v~~~~ 504 (1131)
+|...|.|+|+|+++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||.++ .....+.+|++.|.|.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977644444 57899999999999998876 899999999999999444 44458899999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC-eeeEEE
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTY 583 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~ 583 (1131)
|+|.. +.+++|||.||.|++||.+.......--.|+.+|..+.+-|.|..+++++ ...+++||+.+| +.+..+
T Consensus 161 ~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 98754 47999999999999999998865554456888999999999999999997 678999999855 455555
Q ss_pred ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
..|+. .|+|+++..++..|++++-|+.+++||+.+-+.+..+...+ +|.+++.+|++..++.|..||.+.+-+
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeeh
Confidence 55555 99999999999999999999999999999989988887665 799999999999999999999987764
No 65
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.3e-29 Score=232.06 Aligned_cols=247 Identities=20% Similarity=0.275 Sum_probs=218.6
Q ss_pred ceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 402 ~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
..++..|+++|.++.|+-||+|.++++.|++|++|+...|.+++ ++.+|...|.+++.+.|+. .+++|+.|+.+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence 34688999999999999999999999999999999999988665 7899999999999999998 699999999999
Q ss_pred EEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc--eeEEecCCCceEEEEEEccCCCEEEE
Q 001178 482 VWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG--SRVDYDAPGLWCTTMLYSADGSRLFS 558 (1131)
Q Consensus 482 iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~ 558 (1131)
+|| .+|+.++.+.+|.+.|+.+.|+ ++...+++|+.|..+++||-+... ++..+......|.++.++ +..+++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence 999 9999999999999999999995 455799999999999999987643 444566666678887775 567888
Q ss_pred EeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 559 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
++. ||+++.||++.|++...+.++ +|++++|+++++..++++.|+++++.|-.+|+++....+|....--..+
T Consensus 161 GS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 161 GSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred ecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 876 999999999999887777664 8999999999999999999999999999999999999888765445667
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+++.....+++|++||.+.+||+.+.
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccc
Confidence 78888889999999999999999776
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.1e-28 Score=245.80 Aligned_cols=288 Identities=19% Similarity=0.344 Sum_probs=240.2
Q ss_pred ccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 337 PRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 337 ~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
+++....+-|.+.|.++... ++ .+.+|+.||.++|||... +... ++.||.++|.+++
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~G-k~~~-------------------~~~Ght~~ik~v~ 151 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKG-KSIK-------------------TIVGHTGPIKSVA 151 (423)
T ss_pred CCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCC-ceEE-------------------EEecCCcceeeeE
Confidence 34455667799999999998 44 489999999999999874 4333 4779999999888
Q ss_pred EcCCC---CEEEEEeCCCeEEEEEecCCCcc-ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CC-----
Q 001178 417 WSPDG---NFIGVAFTKHLIHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LS----- 486 (1131)
Q Consensus 417 ~spdg---~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~----- 486 (1131)
|.-.. ..+++++.|.++++|..+.++.. .......||...|.++...++|. .+++|+.|.+++||+ ..
T Consensus 152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcccc
Confidence 86433 36999999999999999877642 22223459999999999999999 899999999999999 21
Q ss_pred --------------------CceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEE
Q 001178 487 --------------------GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTT 546 (1131)
Q Consensus 487 --------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 546 (1131)
+.++.++.||..+|.++.|.+ ...+++++.|.+|+.||+.+++....+... ..+.+
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~ 305 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNC 305 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cceeE
Confidence 234677889999999999965 358999999999999999999888776654 35899
Q ss_pred EEEccCCCEEEEEeecCCCCceEEEEeCCCCe---eeEEEecccCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCCCe-
Q 001178 547 MLYSADGSRLFSCGTSKEGDSHLVEWNESEGA---LKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVN- 621 (1131)
Q Consensus 547 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~- 621 (1131)
+.++|..++|++++. +..|++||.+++. ....|.+|.+ .|.++.|+|... .|++|+.|+++++||+++-+
T Consensus 306 i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ 380 (423)
T KOG0313|consen 306 ISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA 380 (423)
T ss_pred eecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCCC
Confidence 999999999999987 8999999998753 4567888877 999999999875 67789999999999999876
Q ss_pred EEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 622 MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
++..+..|.. .|.++.|+. +..+++|+.|.+|+|+.-
T Consensus 381 plydI~~h~D--Kvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 381 PLYDIAGHND--KVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred cceeeccCCc--eEEEEeccC-CceEEeccCcceEEEecc
Confidence 8888876644 899999986 668999999999999864
No 67
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=7.3e-30 Score=249.95 Aligned_cols=230 Identities=20% Similarity=0.316 Sum_probs=202.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG 487 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 487 (1131)
...|.|+.+ |...+++|..|++|+|||..+-.+++ .+.||++.|.|+.|. .+ ++++|+.|.+|+||| .+|
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccCC
Confidence 457999988 55689999999999999999876665 689999999999995 44 899999999999999 999
Q ss_pred ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE---EecCCCceEEEEEEccCCCEEEEEeecCC
Q 001178 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGLWCTTMLYSADGSRLFSCGTSKE 564 (1131)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 564 (1131)
+++.++.+|...|..+.|+. .++++++.|.++.+||+....... .+.+|...|+.+.|+ .+++++++.
T Consensus 268 e~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg--- 338 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG--- 338 (499)
T ss_pred chhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC---
Confidence 99999999999999999843 589999999999999998766432 567888899999886 459999875
Q ss_pred CCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCC
Q 001178 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~ 644 (1131)
|.+|++|+..+++.++++.+|.. .|.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.|. .
T Consensus 339 -DRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd--~ 410 (499)
T KOG0281|consen 339 -DRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD--N 410 (499)
T ss_pred -CceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec--C
Confidence 99999999999999999999877 7877777 578999999999999999999999999987765 79999996 5
Q ss_pred CEEEEEECCCcEEEEecCCC
Q 001178 645 NLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+.+++|+.||+|++||+..+
T Consensus 411 krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ceeeeccccceEEEEecccc
Confidence 67999999999999999776
No 68
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.5e-28 Score=237.39 Aligned_cols=295 Identities=18% Similarity=0.328 Sum_probs=233.4
Q ss_pred cccccccccCCCCCCCccccccCCCCCCCCcccccCCCCchHHHHHhhccccCccccccCCCCCcccccCCCcc-cceee
Q 001178 264 IQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYPSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLP-RAVAC 342 (1131)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~ 342 (1131)
+-||...|+++.|.+.. | .+.++.+.+..+.+.+.. +... --+++
T Consensus 121 s~DG~lvATGsaD~SIK--i------------------ldvermlaks~~~em~~~--------------~~qa~hPvIR 166 (430)
T KOG0640|consen 121 SPDGSLVATGSADASIK--I------------------LDVERMLAKSKPKEMISG--------------DTQARHPVIR 166 (430)
T ss_pred CCCCcEEEccCCcceEE--E------------------eehhhhhhhcchhhhccC--------------CcccCCceEe
Confidence 56799999999998883 3 345555544433221000 1111 13566
Q ss_pred ec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 343 TM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 343 ~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
++ .|.++|+++.|+|... +|++|+.|++|+++|.......+ .+|++ ....+|.++.|+|.|
T Consensus 167 TlYDH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKr--A~K~~---------------qd~~~vrsiSfHPsG 228 (430)
T KOG0640|consen 167 TLYDHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKR--AFKVF---------------QDTEPVRSISFHPSG 228 (430)
T ss_pred ehhhccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHH--HHHHh---------------hccceeeeEeecCCC
Confidence 66 5999999999999987 89999999999999987544332 23321 234689999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEec-CCcc-
Q 001178 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE-GHEA- 498 (1131)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~-~h~~- 498 (1131)
.+|+.|..-.++++||+++-+|......-.+|++.|+++.+++.++ +.++++.||.|+||| .+++++.++. .|.+
T Consensus 229 efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~--lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs 306 (430)
T KOG0640|consen 229 EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS--LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS 306 (430)
T ss_pred ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc--EEEEeccCCcEEeeccccHHHHHHHHhhcCCc
Confidence 9999999999999999999887655545578999999999999999 899999999999999 9999999886 5654
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCc-----eEEEEEEccCCCEEEEEeecCCCCceEEEEe
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-----WCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 573 (1131)
.|++..| ..+++++++.+.|..+++|.+.++..+..+.+.+. .-+...|+....+++.--. ..+.++-||
T Consensus 307 evcSa~F--tkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE---as~slcsWd 381 (430)
T KOG0640|consen 307 EVCSAVF--TKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE---ASNSLCSWD 381 (430)
T ss_pred eeeeEEE--ccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc---ccCceeecc
Confidence 5777777 56789999999999999999999999887766522 2345567777888776532 367899999
Q ss_pred CCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEc
Q 001178 574 ESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1131)
.+++..+..+...+++.+..+..+|.+.-+++++.|..+++|--
T Consensus 382 aRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 382 ARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 99998887777667779999999999999999999999999954
No 69
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.7e-27 Score=261.19 Aligned_cols=247 Identities=24% Similarity=0.405 Sum_probs=217.0
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|.++|.+++|+|++++|++++.||.|++|++.+++.. ..+.+|...+..+.|+++++ .+++++.|+.|++|
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~ 78 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL---RTLKGHTGPVRDVAASADGT--YLASGSSDKTIRLW 78 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE---EEEecCCcceeEEEECCCCC--EEEEEcCCCeEEEE
Confidence 46689999999999999999999999999999999987633 35678999999999999997 79999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
| ..++.+..+..|...+.++.|.+. +.++++++.||.|++||+++.+....+..+...+.++.|+|++.++++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 155 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ- 155 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-
Confidence 9 666788888899999999999765 568888888999999999988888888878888999999999999888864
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
++.|.+||.++++.+..+..+.. .+.++.|+|+++.+++++.++.|++||+..++.+..+..+.. .+.++.|+|
T Consensus 156 ---~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~ 229 (289)
T cd00200 156 ---DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSP 229 (289)
T ss_pred ---CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcC
Confidence 88999999998988888886554 799999999999999999999999999998888777754433 799999999
Q ss_pred CCCEEEEEECCCcEEEEecCCC
Q 001178 643 EGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++.++++++.+|.+++|+..++
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCc
Confidence 9888888888999999998654
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.5e-28 Score=276.46 Aligned_cols=305 Identities=18% Similarity=0.271 Sum_probs=247.3
Q ss_pred CCCcEEEEEEecCCCcEEEEEc--CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
++..|.+++.+|||.. +|||+ .||.++||+.+.--.. ...++.. .+...-.+..|.+.|+|+.|+|||++
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 5668999999999985 99999 8999999997531100 0111111 11222357799999999999999999
Q ss_pred EEEEeCCCeEEEEEecC----C-----------CccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC
Q 001178 424 IGVAFTKHLIHLYTYQG----S-----------NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG 487 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~----~-----------~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 487 (1131)
||+|++|+.|.||+... . +..+....+.+|...|.+++|+|++. +++++|.|++|.||| .+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999883 0 11234557899999999999999999 899999999999999 888
Q ss_pred ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC------CceEEEEEEccCCCEEEEEee
Q 001178 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------GLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
+.+..+.+|.+.|..+.|.| -|+++++-+.|++|++|+....+....+..+ ......+.|||||.+|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 99999999999999999955 5589999999999999997664444433332 235789999999999999876
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCC-----CC------------EEEEEEcCCcEEEEEcCCCeEEE
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT-----RN------------RILAAGEDNQIKFWDMDNVNMLT 624 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~~~~~dg~i~iwd~~~~~~~~ 624 (1131)
-..+...+.|.+..+-+.-..+.||+. ++.++.|+|. .+ .+++|+.|++|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 556677899999888888889999888 9999999883 11 56779999999999998887776
Q ss_pred EEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 625 STEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 625 ~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.+..-.. ..|.+++|+|||..|++++.||+|.++.++..
T Consensus 319 vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 6543332 27999999999999999999999999998654
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=3.2e-29 Score=252.11 Aligned_cols=291 Identities=16% Similarity=0.243 Sum_probs=247.4
Q ss_pred cccceeeecc-CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEE
Q 001178 336 LPRAVACTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR 414 (1131)
Q Consensus 336 ~~~~~~~~~~-h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 414 (1131)
+|......++ |.++|..+.|-++..+ |++|+.|..|.+|++..++.... .++.|..+.|+.
T Consensus 163 lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~it~ 224 (459)
T KOG0288|consen 163 LPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNITS 224 (459)
T ss_pred cchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCcce
Confidence 3444555555 9999999999999664 99999999999999987763221 157788899999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe
Q 001178 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF 493 (1131)
Q Consensus 415 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~ 493 (1131)
+.|.++++++++++.|+.+++|++....... ++.||++.|+++.|..... .+++|+.|.+|++|| ..+.+..++
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheeccc
Confidence 9999999999999999999999999876544 7899999999999998776 599999999999999 667777665
Q ss_pred cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEe
Q 001178 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573 (1131)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 573 (1131)
.. ...+..++.. ...+++|-.|+.|++||.+..........++ .|+++..+++|..+++++. |.++.+.|
T Consensus 300 l~-~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~viD 369 (459)
T KOG0288|consen 300 LP-GSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKVID 369 (459)
T ss_pred cc-cccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceeeee
Confidence 42 3344555443 2578899999999999999999888887776 7999999999999999986 88999999
Q ss_pred CCCCeeeEEEeccc---CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001178 574 ESEGALKRTYIGFR---KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1131)
Q Consensus 574 ~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~ 650 (1131)
.++......+.... ....+.+.|||++.|+++|+.||.|+||++.++++...+........|++++|+|.|..++++
T Consensus 370 lRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 370 LRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred cccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 99998888776432 224677999999999999999999999999999999998887765579999999999999999
Q ss_pred ECCCcEEEE
Q 001178 651 TADQGIKIL 659 (1131)
Q Consensus 651 ~~dg~i~iw 659 (1131)
+.++.+.+|
T Consensus 450 dk~~~v~lW 458 (459)
T KOG0288|consen 450 DKQKAVTLW 458 (459)
T ss_pred cCCcceEec
Confidence 999999999
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=3.1e-29 Score=234.96 Aligned_cols=300 Identities=16% Similarity=0.249 Sum_probs=253.6
Q ss_pred CCCccceEEEEeec---CCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEE
Q 001178 764 TDSASKVARLLYTN---SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVA 840 (1131)
Q Consensus 764 ~~~~~~i~~l~~s~---~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~ 840 (1131)
.+|..+|..++||| +|-.|++++.|+.-.+- +-.+|..+-. ..+|.+.|++.+
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr----------------------~g~tgdwigt--feghkgavw~~~ 66 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLR----------------------NGDTGDWIGT--FEGHKGAVWSAT 66 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhc----------------------cCCCCCcEEe--eeccCcceeeee
Confidence 55899999999985 89999999998764332 2334444332 237999999999
Q ss_pred ecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc-eeEEeeccccc
Q 001178 841 LSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-EVKTKLKGHQK 918 (1131)
Q Consensus 841 ~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~-~~~~~~~~h~~ 918 (1131)
+..+....|+++ |-+-+|||.-+|..+..|. |...|.+++|+. |.+.|++|+.+..++|||++.. .+...+.+|.+
T Consensus 67 l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg 144 (334)
T KOG0278|consen 67 LNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG 144 (334)
T ss_pred cCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCC
Confidence 999998889888 8899999999999998886 778899999999 8999999999999999999865 45667899999
Q ss_pred CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCccc
Q 001178 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMEC 998 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~ 998 (1131)
.|..+.|....+.++|+..|++|++||..++......... .++.++-.++||++|.++..+.|.+||..+...
T Consensus 145 ~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-------s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~ 217 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-------SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGL 217 (334)
T ss_pred cceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC-------CCCcceeeccCCCEEEEecCceeEEeccccccc
Confidence 9999999999999999999999999999998876665543 789999999999999999999999999999999
Q ss_pred ceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCe
Q 001178 999 IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQ 1078 (1131)
Q Consensus 999 ~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~ 1078 (1131)
++.+..+ ..|.+..++|+...+++|++|..++.||+.+|+.+...... |.++|. +|.|+| ++..
T Consensus 218 lKs~k~P----~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg---------h~gpVh--cVrFSP-dGE~ 281 (334)
T KOG0278|consen 218 LKSYKMP----CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG---------HFGPVH--CVRFSP-DGEL 281 (334)
T ss_pred eeeccCc----cccccccccCCCceEEecCcceEEEEEeccCCceeeecccC---------CCCceE--EEEECC-CCce
Confidence 9888765 58999999999999999999999999999999988775322 233343 799999 7789
Q ss_pred EEEEecCCcEEEEecCCCc--cccccccCCCCCCCC
Q 001178 1079 LAVGLTDGSVKVIEPSETE--RKWGVAVPVDNGTDN 1112 (1131)
Q Consensus 1079 l~s~~~Dg~v~iW~~~~~~--~~w~~~~p~~~~~~~ 1112 (1131)
.++|++||+|+||.....+ +.|....|...|.-+
T Consensus 282 yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~eev 317 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEEV 317 (334)
T ss_pred eeccCCCceEEEEEecCCCchhhccccChhhhcccc
Confidence 9999999999999986443 358888887766543
No 73
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.1e-27 Score=292.13 Aligned_cols=270 Identities=16% Similarity=0.230 Sum_probs=214.1
Q ss_pred CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCC----Ccc
Q 001178 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS----NDL 444 (1131)
Q Consensus 369 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~----~~~ 444 (1131)
+|.+++|+..+.+..... ...-+..|.+.|.+++|+|+|++||+|+.|++|+|||.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 667888887754432210 00124468999999999999999999999999999998542 111
Q ss_pred c-eeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCe
Q 001178 445 C-QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGK 522 (1131)
Q Consensus 445 ~-~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~ 522 (1131)
. ....+. +...|.+++|++.... +|++++.|++|++|| .+++.+..+.+|.+.|++++|++. ++.+|++|+.||.
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 4567999999986433 799999999999999 778888999999999999999753 4579999999999
Q ss_pred EEEEeCCCCceeEEecCCCceEEEEEEc-cCCCEEEEEeecCCCCceEEEEeCCCCe-eeEEEecccCCceEEEEEeCCC
Q 001178 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYS-ADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTR 600 (1131)
Q Consensus 523 i~~wd~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~ 600 (1131)
|++||+++......+..+ ..+.++.|+ ++|.++++++. ++.|++||+++++ .+..+.+|.. .|.++.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988777666644 568899995 57999999986 8999999998765 4566777655 89999997 67
Q ss_pred CEEEEEEcCCcEEEEEcCCC------eEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 601 NRILAAGEDNQIKFWDMDNV------NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.++++++.|++|++||+..+ ..+..+..|. ..+.+++|+|++.++++|+.|+.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 4556665544 36889999999999999999999999997544
No 74
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=224.60 Aligned_cols=274 Identities=15% Similarity=0.207 Sum_probs=234.4
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~ 423 (1131)
+|...|.+|+|+-+|.+ ||+|+.|+++.+|+++..+..... ...+|.+.|-.++|+| ....
T Consensus 18 ~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred hhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCCCCcc
Confidence 48899999999999996 999999999999999987554321 4679999999999998 5679
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 502 (1131)
+|+++.|++|++||+..+++.... . ..+.=.-+.|+|+|+ +++.++.|..|.+.| .+.+.+... .....+.-
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne 152 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNE 152 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehh-cccceeee
Confidence 999999999999999999876532 2 233445689999999 799999999999999 444444333 35566788
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEE
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 582 (1131)
++|+.+ +++++.....|.|.|..+...+....+..|...+.++.|+|+|+++|+|+. |..+.+||+..--+++.
T Consensus 153 ~~w~~~--nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~ 226 (313)
T KOG1407|consen 153 ISWNNS--NDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERC 226 (313)
T ss_pred eeecCC--CCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhhee
Confidence 888743 356777777899999999999999999999999999999999999999997 99999999999888888
Q ss_pred EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC
Q 001178 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
+..+. -+|..+.|+.+|++|++|++|..|-|-++.+|..+..++..+ +...++|+|...+||.++.|
T Consensus 227 isRld-wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 227 ISRLD-WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ecccc-CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 88754 499999999999999999999999999999999999998765 57999999999999988765
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-27 Score=227.16 Aligned_cols=285 Identities=13% Similarity=0.143 Sum_probs=235.5
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
..+|..+++-+.|+.+|. ||.+++.|.++.||-..+|+.+. ++.||++.|.|+..+-+.+
T Consensus 6 l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlG-------------------ty~GHtGavW~~Did~~s~ 65 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLG-------------------TYDGHTGAVWCCDIDWDSK 65 (327)
T ss_pred cccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceee-------------------eecCCCceEEEEEecCCcc
Confidence 446999999999999998 89999999999999999999887 5889999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEE-----cCCCcEEEEe-C-------CCce
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC-----GDDKLIRVWD-L-------SGRK 489 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~-----s~d~~i~iwd-~-------~~~~ 489 (1131)
++++|+.|.++++||+++|+++.. + .-..+|..+.|+++|.. ++.+ +..+.|.++| . ...+
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred eeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 999999999999999999987753 2 24668999999999993 4433 3456788998 3 3445
Q ss_pred eEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE-EecCCCceEEEEEEccCCCEEEEEeecCCCCce
Q 001178 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 568 (1131)
...+..+...++.+-|.+.. ++|++|..||.|..||++++.... .-..|...|+.+.+++|..++++++. |.+
T Consensus 140 ~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dtt 213 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTT 213 (327)
T ss_pred eEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Ccc
Confidence 77788888999999997654 799999999999999999986665 44668889999999999999999987 889
Q ss_pred EEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCc--EEEEEcCCC------------eEEEEEeccCCCCC
Q 001178 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ--IKFWDMDNV------------NMLTSTEAEGGLPS 634 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~iwd~~~~------------~~~~~~~~~~~~~~ 634 (1131)
-.+||..+-+.++++.. ..++++.+++|...+++.|+.-.. |.--+.+.| +.+...+ +|.++
T Consensus 214 akl~D~~tl~v~Kty~t--e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GHFGP 289 (327)
T KOG0643|consen 214 AKLVDVRTLEVLKTYTT--ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GHFGP 289 (327)
T ss_pred ceeeeccceeeEEEeee--cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--ccccC
Confidence 99999999999999984 448999999999888888664322 221222222 2233344 45569
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEecCC
Q 001178 635 LPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 635 i~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
|++++|+|+|+..++|+.||.|++.-...
T Consensus 290 INsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 290 INSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cceeEECCCCcccccCCCCceEEEEEecc
Confidence 99999999999999999999999986654
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.1e-26 Score=224.61 Aligned_cols=273 Identities=18% Similarity=0.270 Sum_probs=221.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCC-cccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR-ERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
..+.|.+++|||....+++.||-||+||+|++... .... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 46799999999966668889999999999999873 3332 1356899999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
++|+.|+.+++||+.+++.. .+..|.++|..+.|-+...+..|+|||.|++|+.|| ....++.++. -..++.++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998533 477899999999999877655899999999999999 7777777765 45667777
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecC--CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC--ee
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG--AL 579 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~ 579 (1131)
..- ..+++.+..++.|.+|++++......... -.-.+++++.-+|....+.|+. +|++.+..+..+ +.
T Consensus 163 Dv~----~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVL----YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hcc----CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 542 25788999999999999987665543222 2336889999998888888887 888888887765 44
Q ss_pred eEEEecccC--------CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEE
Q 001178 580 KRTYIGFRK--------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT 651 (1131)
Q Consensus 580 ~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~ 651 (1131)
-..|+.|.. ..|+.++|+|.-..|++++.||++.+||-.....+...+.+.. +|++++|+.+|.+++.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEe
Confidence 456666652 2467799999999999999999999999988777776665544 899999999999988664
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1e-26 Score=256.99 Aligned_cols=299 Identities=18% Similarity=0.200 Sum_probs=215.3
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC---CC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP---DG 421 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp---dg 421 (1131)
.|.+.|+++.||+||+| ||+|+.||.|+||.+...+...... ........ .+.. .+.+..+.-++ .+
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~------~~~~~~~~--~~~~-~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAE------GDSSCMYF--EYNA-NSQIEPSTSSEEKISS 334 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccc------cccchhhh--hhhh-ccccCccccccccccc
Confidence 49999999999999995 9999999999999997744422100 00000000 0000 00011111111 00
Q ss_pred C--EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 422 N--FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 422 ~--~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
+ ..-.+.....+.+-+..-.-.-.++..+.||.+.|.++.||.++ +|+|+|.|++||+|+ ....+++.|. |..
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 1 11112222222111111111113445789999999999999876 699999999999999 7788888886 999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
.|+|++|+|.+| +++++|+-||.||+|++...+...-...+ .-|++++|.|||++.++|+. +|..++|+....+
T Consensus 411 fVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 411 FVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLK 484 (712)
T ss_pred eeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEe----ccEEEEEEccCCe
Confidence 999999999766 89999999999999999766555443333 67999999999999999998 9999999998877
Q ss_pred eeEEEecc-------cCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001178 579 LKRTYIGF-------RKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1131)
Q Consensus 579 ~~~~~~~~-------~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~ 650 (1131)
.+..+.-+ ....|+.+.|.|.. ..+++.+.|..|+|+|.++..++..+++......-....|+.||++++++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 76554321 12269999998754 46888999999999999888888888766554455678899999999999
Q ss_pred ECCCcEEEEecCC
Q 001178 651 TADQGIKILANAD 663 (1131)
Q Consensus 651 ~~dg~i~iw~~~~ 663 (1131)
++|..|++|+...
T Consensus 565 seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 565 SEDSWVYIWKNDS 577 (712)
T ss_pred ecCceEEEEeCCC
Confidence 9999999999743
No 78
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=3.8e-26 Score=216.80 Aligned_cols=236 Identities=13% Similarity=0.225 Sum_probs=203.0
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.||+.+++.+.|+.+|.+|.+|+.|.+..||-..+|+.+. ++.||++.|+|++...+.+ ++++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 578999999999999999999999999999999998888665 7899999999999999999 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEec-----CCeEEEEeCC-------CCceeEEecCCCceEEEEEEc
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-----DGKIKAWLYD-------NVGSRVDYDAPGLWCTTMLYS 550 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~s 550 (1131)
| .+|+++..+. ...+|..+.|++. |++++...+ .+.|.++|++ ..++...+..+...++.+.|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~--gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFG--GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccC--CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9 9999998886 5678999998654 455555543 4678999988 344566777788899999999
Q ss_pred cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC
Q 001178 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG 630 (1131)
Q Consensus 551 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1131)
|-+++|++|.. +|.|..||+++|+....-...+...|+.++++++..++++++.|.+-++||..+.+.+++.....
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~ 232 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER 232 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc
Confidence 99999999986 99999999999865554433445589999999999999999999999999999999988887654
Q ss_pred CCCCcceEEEcCCCCEEEEEECCC
Q 001178 631 GLPSLPRLRFNKEGNLLVVTTADQ 654 (1131)
Q Consensus 631 ~~~~i~~v~~sp~~~~l~~~~~dg 654 (1131)
+|++.+++|....++.|+...
T Consensus 233 ---PvN~aaisP~~d~VilgGGqe 253 (327)
T KOG0643|consen 233 ---PVNTAAISPLLDHVILGGGQE 253 (327)
T ss_pred ---cccceecccccceEEecCCce
Confidence 799999999877777776543
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.2e-26 Score=262.25 Aligned_cols=278 Identities=18% Similarity=0.300 Sum_probs=244.5
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.+...|.|..|+ ++ .+++|+.|++|.+||..++..+.. -+.||.+.|.+++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 467899999999 44 488999999999999999887752 277999999999999888899
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
++|+.|.+++|||+.+|+|.. .+.+|...|.++...+. ++++|+.|.+|++|+ .++..+..+.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999998776 78899999999988654 689999999999999 7799999999999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC-eeeEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRT 582 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 582 (1131)
..+ +.++++|+.|++|++||+.+.+....+.+|...|.++.+.+. ..+++++. |+.|++||+.++ +++..
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 874 479999999999999999999999999999999999988776 88999987 899999999999 89999
Q ss_pred EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
+.+|.. .+..+.+ .++++++++.|++|++||..+++++..+... +...|..+++. ...+++++.||.+.+||+.
T Consensus 409 l~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 409 LQGHTS-LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred hcCCcc-ccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence 998766 5544433 5789999999999999999999999999875 33367777765 4678999999999999999
Q ss_pred CCc
Q 001178 663 DGL 665 (1131)
Q Consensus 663 ~~~ 665 (1131)
++.
T Consensus 483 ~~~ 485 (537)
T KOG0274|consen 483 SGT 485 (537)
T ss_pred cCc
Confidence 884
No 80
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=9.6e-26 Score=255.32 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=222.1
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFI 424 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~l 424 (1131)
+-..|....+++|+.. +++++.+..+..|+...+..+. +.-..+........+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 3456777788888764 6677778888899876654321 11111111111235789999999999999 89999
Q ss_pred EEEeCCCeEEEEEecCCCc----cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccC
Q 001178 425 GVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP 499 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~ 499 (1131)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+||| .+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999976532 1234468899999999999998644 799999999999999 778888899999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCce-EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW-CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
|.+++|++ ++.+|++++.|+.|++||++++.....+..|... +..+.|.+++..+++++.+...++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999975 5689999999999999999998888777777653 45778999998998887655568999999998754
Q ss_pred -eeEEEecccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCC
Q 001178 579 -LKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1131)
Q Consensus 579 -~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~ 644 (1131)
.+.....+....+....|+++++++++++ .|+.|++||+.+++.+...... ...++..++|.|.-
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKW 315 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEecccc
Confidence 33333333333566678999999999887 5999999999999877765443 23367888888853
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1e-26 Score=263.51 Aligned_cols=304 Identities=18% Similarity=0.271 Sum_probs=243.2
Q ss_pred CccceEEEEeecCCceEEEee--ecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC
Q 001178 766 SASKVARLLYTNSGIGILALW--SNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK 843 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~ 843 (1131)
+...|.++..+|+|..+++++ .|+.+++|+.+.-.... ..++..-.+.+. ....|.+.|.|+.|++
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~----------~~~~~~l~k~l~--~m~~h~~sv~CVR~S~ 79 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK----------EEKNENLPKHLC--TMDDHDGSVNCVRFSP 79 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchh----------hhhhcccchhhe--eeccccCceeEEEECC
Confidence 455689999999999999999 79999999875421110 112221011111 1126899999999999
Q ss_pred CCCEEEEEe-CCeEEEEECCC------------------ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEe
Q 001178 844 NDSYVMSAG-GGKVSLFNMMN------------------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV 904 (1131)
Q Consensus 844 dg~~la~~~-dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~ 904 (1131)
||++||+|+ |+.|.||.... ++++..+.+|...|..++|+| ++.+||+++.|++|.||+.
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcc
Confidence 999999999 57799998762 346788899999999999999 9999999999999999999
Q ss_pred ecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-
Q 001178 905 RVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN- 983 (1131)
Q Consensus 905 ~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~- 983 (1131)
.+.+.+..+++|.+.|-.+.|.|-|++|||-+.|++|++|++..+...+...-..........+..+.|||||.+|++.
T Consensus 159 ~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 159 KTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999999999999999999999999999988866555544333333334678899999999999984
Q ss_pred ----eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEcc-----CCC------------EEEEEecCCcEEEEECCCCc
Q 001178 984 ----HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC-----NSQ------------LIYATFTDGSIGVFDADSLR 1042 (1131)
Q Consensus 984 ----~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~-----dg~------------~l~s~~~dg~i~vwd~~~~~ 1042 (1131)
.-..+.|.+-.+.+.-..+.+| .+++.+++|+| ..+ .+|+|+.|++|.||.....+
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH---~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGH---SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecC---CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 2456889998888888888888 78999999998 111 68999999999999987666
Q ss_pred eeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1043 LRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
.+..+.... .. ..++++|+| ||..|+.+|.||+|.+..+.+.|
T Consensus 316 Pl~vi~~lf---------~~--SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 316 PLFVIHNLF---------NK--SIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred chhhhhhhh---------cC--ceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 655443211 11 235799999 78999999999999999997554
No 82
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=3.7e-26 Score=227.78 Aligned_cols=284 Identities=19% Similarity=0.299 Sum_probs=235.5
Q ss_pred ecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEeecccC-CccEEEEEecCCeEEEEeCC
Q 001178 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKE-NIHFIFSTAVDGKIKAWLYD 529 (1131)
Q Consensus 451 ~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~dg~i~~wd~~ 529 (1131)
.-|...|.++... ++ .++||+.||.+++||..|+.+..+.||.++|.++++.... ....+++++.|.++++|.++
T Consensus 102 ~~hdDWVSsv~~~--~~--~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SK--WILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred ccchhhhhhhccc--Cc--eEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 3588999999888 55 7999999999999999999999999999999988876433 23469999999999999988
Q ss_pred CCceeE----EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC-------------------------CCeee
Q 001178 530 NVGSRV----DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-------------------------EGALK 580 (1131)
Q Consensus 530 ~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-------------------------~~~~~ 580 (1131)
.+.... ...+|...|.++...++|.++++++. |..|.+|+.. ++.++
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 765443 33488899999999999999999998 9999999921 12345
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
..+.+|.. .|.++.|++ ...+++++.|.+|+.||+.++.....+.... .++++..+|..++|++|+.|..+++||
T Consensus 254 vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 254 VTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecC
Confidence 56778776 899999987 6789999999999999999999888876544 689999999999999999999999999
Q ss_pred cCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCC
Q 001178 661 NADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDK 740 (1131)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~ 740 (1131)
..++.
T Consensus 329 PR~~~--------------------------------------------------------------------------- 333 (423)
T KOG0313|consen 329 PRTGD--------------------------------------------------------------------------- 333 (423)
T ss_pred CCCCC---------------------------------------------------------------------------
Confidence 76651
Q ss_pred CcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCC
Q 001178 741 TKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSN 820 (1131)
Q Consensus 741 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~ 820 (1131)
+.+....|
T Consensus 334 ---------------------------gs~v~~s~--------------------------------------------- 341 (423)
T KOG0313|consen 334 ---------------------------GSVVSQSL--------------------------------------------- 341 (423)
T ss_pred ---------------------------CceeEEee---------------------------------------------
Confidence 00000000
Q ss_pred CcccccCCCCCCCCCeeEEEecCCCCE-EEEEe-CCeEEEEECCCce-eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC
Q 001178 821 GLLMTNDVPENAEDVVPCVALSKNDSY-VMSAG-GGKVSLFNMMNFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS 897 (1131)
Q Consensus 821 ~~~~~~~~~~~~~~~i~~l~~s~dg~~-la~~~-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg 897 (1131)
.+|...|.++.++|...+ |++++ |+++++||+.+.+ .+..+.+|...|.++.|.. +.+|++|+.|.
T Consensus 342 ---------~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~ 410 (423)
T KOG0313|consen 342 ---------IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADN 410 (423)
T ss_pred ---------ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceEEeccCcc
Confidence 058888999999997765 55666 9999999999877 8999999999999999984 67899999999
Q ss_pred cEEEEEee
Q 001178 898 TIQIYNVR 905 (1131)
Q Consensus 898 ~I~iwd~~ 905 (1131)
+|+|+...
T Consensus 411 ~l~i~~~~ 418 (423)
T KOG0313|consen 411 KLRIFKGS 418 (423)
T ss_pred eEEEeccc
Confidence 99998643
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.7e-26 Score=223.17 Aligned_cols=304 Identities=16% Similarity=0.227 Sum_probs=236.4
Q ss_pred eeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeeccccc----ccceeceeccCCCCCEEEEEE
Q 001178 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNC----SMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 342 ~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
..-.|++++.+.+|||||. ++|+|+.|..|+|.|++.. +... +.-++... .+++. .++-.|.+.|+++.|
T Consensus 107 ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildverm--laks--~~~em~~~~~qa~hPvI-RTlYDH~devn~l~F 180 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERM--LAKS--KPKEMISGDTQARHPVI-RTLYDHVDEVNDLDF 180 (430)
T ss_pred EEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhh--hhhc--chhhhccCCcccCCceE-eehhhccCcccceee
Confidence 3445999999999999998 8999999999999998721 0000 00011111 11222 257899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe---
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF--- 493 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~--- 493 (1131)
+|....|++|+.|++|+++|.......+..+ ......+|.++.|+|.|. +++.|.+..++++|| .+-++...-
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K-~~qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFK-VFQDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHH-HhhccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcc
Confidence 9999999999999999999997644333222 233566899999999999 899999999999999 555554332
Q ss_pred cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec-CC-CceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-AP-GLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
..|.+.|+++.++ +.+++.++++.||.|++||--..+++..+. .| +..|.+..|..+|+++++.+. |..+++
T Consensus 258 ~qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkL 331 (430)
T KOG0640|consen 258 DQHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKL 331 (430)
T ss_pred cccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeee
Confidence 3689999999885 556899999999999999987777766543 34 347999999999999999987 899999
Q ss_pred EeCCCCeeeEEEecccCC----ceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCE
Q 001178 572 WNESEGALKRTYIGFRKK----SAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646 (1131)
Q Consensus 572 wd~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~ 646 (1131)
|.+.+++.+..+.|.... --+...|+....+++.-. ..+.+.-||.++...+..+.. +|...+..+.-+|.+.-
T Consensus 332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPA 410 (430)
T ss_pred eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCc
Confidence 999999999999865210 122245777777877754 367899999999877666543 55668999999999999
Q ss_pred EEEEECCCcEEEEec
Q 001178 647 LVVTTADQGIKILAN 661 (1131)
Q Consensus 647 l~~~~~dg~i~iw~~ 661 (1131)
+++++.|...++|--
T Consensus 411 FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 411 FMTCSDDFRARFWYR 425 (430)
T ss_pred eeeecccceeeeeee
Confidence 999999999999963
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.9e-26 Score=217.29 Aligned_cols=283 Identities=16% Similarity=0.241 Sum_probs=223.6
Q ss_pred EEEEEec--CCCcEEEEEc-----CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC-CC
Q 001178 351 VSMDFHP--FHHTLLVVGC-----GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GN 422 (1131)
Q Consensus 351 ~~~~fsp--dg~~llasg~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g~ 422 (1131)
.++.||| +++..+|++. ..|.+.|-++..++.+. .+.-+ .-.+.+..++|+++ ..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~--e~~s~---------------d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQ--ECQSY---------------DTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeE--EEEee---------------ecccceeEeeecCCCcc
Confidence 5778888 3443344432 25789999987544433 11111 23567999999996 45
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeE
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~ 501 (1131)
.+++++.||++++||+.-. -.++..++.|...|.++.|++-.++ .++++|.|++|++|+ ..++.+.++.+|...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 7888999999999995433 3455578899999999999997776 678889999999999 88889999999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccC-CCEEEEEeecCCCCceEEEEeCCCC-ee
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD-GSRLFSCGTSKEGDSHLVEWNESEG-AL 579 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~~~~~~i~iwd~~~~-~~ 579 (1131)
...|+|.. .+.++++|.|+++++||++.......+..|...+.++.|+.- .+.+++++. |+.|+.||++.- .+
T Consensus 152 ~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPHI-PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCCC-CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 99999864 479999999999999999998888889999999999999974 556667665 999999999874 45
Q ss_pred eEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCe-EEEEEeccCCCCCcceEEEcC-CCCEEEEEECCCcE
Q 001178 580 KRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVN-MLTSTEAEGGLPSLPRLRFNK-EGNLLVVTTADQGI 656 (1131)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~v~~sp-~~~~l~~~~~dg~i 656 (1131)
+..+.+|.- .|..+.|||.. ..|++++.|-+++|||...+. .+.+...|.. -+..+.|++ ++.++|+.+.|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccce
Confidence 667766544 89999999976 588899999999999988543 3444444433 577888887 67899999999999
Q ss_pred EEEec
Q 001178 657 KILAN 661 (1131)
Q Consensus 657 ~iw~~ 661 (1131)
.||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.1e-25 Score=215.38 Aligned_cols=281 Identities=15% Similarity=0.222 Sum_probs=227.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
-.+.|+++.|+++|.. +++++.|.+++|||..+|++++ ++..+.-.|..++|-.....+.
T Consensus 13 ~~~~i~sl~fs~~G~~-litss~dDsl~LYd~~~g~~~~-------------------ti~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLL-LITSSEDDSLRLYDSLSGKQVK-------------------TINSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCCE-EEEecCCCeEEEEEcCCCceee-------------------EeecccccccEEEEecCCceEE
Confidence 4679999999999985 7778889999999999999876 3455666788899988877777
Q ss_pred EEeC--CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEE
Q 001178 426 VAFT--KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 426 s~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 502 (1131)
.++. |.+|+.-++.+.+.++ -+.||...|++++.+|-+. .++|++.|++|++|| ...++...+.....++.
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~- 146 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIA- 146 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcce-
Confidence 7766 8899999999988665 6899999999999999988 799999999999999 55666665554444444
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCc--eeEEec---CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVG--SRVDYD---APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1131)
+| ++.|-++|++...+.|++||++... +-..+. ......+.+.|+|||++++.+.. .+.+++.|.-+|
T Consensus 147 -Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 147 -AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred -eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 44 5666788888887899999998752 222332 23457899999999999999875 889999999999
Q ss_pred eeeEEEecccCCc--eEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCc
Q 001178 578 ALKRTYIGFRKKS--AGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1131)
Q Consensus 578 ~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~ 655 (1131)
..+.++..+.+.. -...+|+||++++++|+.||+|.+|+++++..+..+... +..++.++.|+|.-.+++++ +..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa--~s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSA--SSN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeec--Cce
Confidence 9999998776532 245789999999999999999999999999999998875 34478999999976666654 557
Q ss_pred EEEEecC
Q 001178 656 IKILANA 662 (1131)
Q Consensus 656 i~iw~~~ 662 (1131)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7888654
No 86
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=3.5e-24 Score=225.93 Aligned_cols=625 Identities=15% Similarity=0.188 Sum_probs=344.6
Q ss_pred ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEE-------ecCCccCeEEEeecccCCccEEEEE
Q 001178 445 CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-------FEGHEAPVYSVCPHQKENIHFIFST 517 (1131)
Q Consensus 445 ~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-------~~~h~~~v~~~~~~~~~~~~~l~s~ 517 (1131)
+....+.+|...|+++.|+|=... +|++||.|..|+||.+....-.. +.+..-.|.++.|++..|| |+..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~-LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg--il~s 146 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADE-LLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG--ILAS 146 (1012)
T ss_pred cccceeecccceeeccCccccchh-hhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc--eEEe
Confidence 344457899999999999995544 79999999999999943222222 2234457889999998875 4455
Q ss_pred ecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC-CeeeEEEecccCCceEEEEE
Q 001178 518 AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKSAGVVQF 596 (1131)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~ 596 (1131)
+..|.+++||+.+.+....+.+|...|.++.|+.||..|++.+. +.+|+|||.+. ++.++...+|.+..-..+.|
T Consensus 147 ~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscK----dkqirifDPRa~~~piQ~te~H~~~rdsRv~w 222 (1012)
T KOG1445|consen 147 GAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCK----DKQIRIFDPRASMEPIQTTEGHGGMRDSRVLW 222 (1012)
T ss_pred ccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecC----CcceEEeCCccCCCccccccccccchhheeee
Confidence 56799999999999999999999999999999999999999976 88999999875 67778888877655555778
Q ss_pred eCCCCEEEEEEcC----CcEEEEEcCC-CeEEEEEeccCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEecCCCchhhhh
Q 001178 597 DTTRNRILAAGED----NQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT-ADQGIKILANADGLRALRA 670 (1131)
Q Consensus 597 s~~~~~l~~~~~d----g~i~iwd~~~-~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~~~~~~ 670 (1131)
..+-.+|++.+.+ ..+++||... +..++++...... .|.---|.||.++|+.++ .+.++..+.+.+....+..
T Consensus 223 ~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~ 301 (1012)
T KOG1445|consen 223 AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSH 301 (1012)
T ss_pred ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhh
Confidence 7665678776654 5689999876 4456666554332 355556889888776655 4677888877654322111
Q ss_pred hhccccccc-c-----ccccccccC----------------------ccceecccccccccccccCCCCCCccccccCCC
Q 001178 671 IETRAYETS-R-----ASTEMKVPG----------------------SAVVTTITPVLSKAERVDRSSPARPSTILNGAD 722 (1131)
Q Consensus 671 ~~~~~~~~~-~-----~~~~~~~~~----------------------~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~ 722 (1131)
...+..+.. . ....+..++ .-....|..|+--...+ .......+..++|..
T Consensus 302 v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G-~~p~~~ageWlnG~N 380 (1012)
T KOG1445|consen 302 VFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRG-AEPGCTAGEWLNGTN 380 (1012)
T ss_pred hhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccC-CccCcCccceecCcc
Confidence 110000000 0 000000000 00000011000000000 000000000110000
Q ss_pred cc--------------------------------ccCCCCceeccccCCCCc----ceeeecccCC---cee-----EEE
Q 001178 723 SA--------------------------------ARGIEKPRNLEDISDKTK----PWELTEIVDP---LQC-----RVV 758 (1131)
Q Consensus 723 ~~--------------------------------~~~~~~~~~~~~~d~~v~----~w~~~~~~~~---~~~-----~~~ 758 (1131)
.. .....-..+-+...+.-. +=+....... ... +..
T Consensus 381 q~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~ 460 (1012)
T KOG1445|consen 381 QVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPY 460 (1012)
T ss_pred ccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhccccc
Confidence 00 000000000000000000 0000000000 000 000
Q ss_pred EcCC-----------CCCCccceEEEEeecCCceEEEee----ec--ceeeEEee----cCCCCCCCC--c-cceee---
Q 001178 759 AMPE-----------STDSASKVARLLYTNSGIGILALW----SN--GVQKLWKW----NRTEQNPSG--K-ATAAV--- 811 (1131)
Q Consensus 759 ~~~~-----------~~~~~~~i~~l~~s~~g~~l~~~~----~d--g~i~iw~~----~~~~~~~~~--~-~~~~~--- 811 (1131)
..+. ..+....+..+. |....++--. .+ .+..+-.. ...++.+.+ . +.+..
T Consensus 461 E~~~g~~~~~~dad~~~g~sS~~s~~~--~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~ 538 (1012)
T KOG1445|consen 461 EKENGVHTPNADADSTQGNSSPISTIS--PEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVP 538 (1012)
T ss_pred ccccCccCCCcccccccCCCCCccccC--CCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCcccccccc
Confidence 0000 000000000000 0000000000 00 00000000 000000000 0 00000
Q ss_pred -------------eceeecCCCCccccc-----CCCC-CCCCCeeEEEecCCCCEEEE---EeCCeEEEEECCCc-eeE-
Q 001178 812 -------------APQHWQPSNGLLMTN-----DVPE-NAEDVVPCVALSKNDSYVMS---AGGGKVSLFNMMNF-KVM- 867 (1131)
Q Consensus 812 -------------~~~~w~~~~~~~~~~-----~~~~-~~~~~i~~l~~s~dg~~la~---~~dg~i~vwd~~~~-~~~- 867 (1131)
.+.-+.-..|..... .+.+ ...-+-.|=-|..+.+++|+ |+.|.|.||++..- ++.
T Consensus 539 ~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPD 618 (1012)
T KOG1445|consen 539 LSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPD 618 (1012)
T ss_pred ccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCc
Confidence 000011111110000 0000 00111112234445566664 34789999998642 221
Q ss_pred ---EEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc-------eeEEeecccccCeeEEEEccC-CCEEEEEe
Q 001178 868 ---TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-------EVKTKLKGHQKHITGLAFSTN-LNILVSSG 936 (1131)
Q Consensus 868 ---~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~l~~s~d-g~~l~s~~ 936 (1131)
-.+. ....|+.+.|.|-|...||++++||.|++|.+..+ ..-..+.+|...|+++.|+|- ...|++++
T Consensus 619 gv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as 697 (1012)
T KOG1445|consen 619 GVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS 697 (1012)
T ss_pred ccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh
Confidence 1111 34569999999999999999999999999999754 344678899999999999995 46899999
Q ss_pred CCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE-EeCCeEEEEeCCCcccceeeecCCCCCCCeEEE
Q 001178 937 SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSA 1015 (1131)
Q Consensus 937 ~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i 1015 (1131)
.|.+|++||+.+.+.... ..+ |...|..++|||||+.+++ +.||.++||+.++++....- +.......--.|
T Consensus 698 yd~Ti~lWDl~~~~~~~~-----l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E-g~gpvgtRgARi 770 (1012)
T KOG1445|consen 698 YDSTIELWDLANAKLYSR-----LVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE-GKGPVGTRGARI 770 (1012)
T ss_pred ccceeeeeehhhhhhhhe-----ecc-CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc-CCCCccCcceeE
Confidence 999999999998654222 222 3388999999999999997 78999999999876543221 111113444567
Q ss_pred EEccCCCEEEEEecC----CcEEEEECCCCce--eeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEE
Q 001178 1016 AYSCNSQLIYATFTD----GSIGVFDADSLRL--RCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVK 1089 (1131)
Q Consensus 1016 ~~s~dg~~l~s~~~d----g~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~ 1089 (1131)
.|.-||+++++.+.| ..|.+||.++... +.....-. ..+ ++--.+.++.+-+|++|-.|..|.
T Consensus 771 ~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv--------aps---~LvP~YD~Ds~~lfltGKGD~~v~ 839 (1012)
T KOG1445|consen 771 LWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV--------APS---PLVPHYDYDSNVLFLTGKGDRFVN 839 (1012)
T ss_pred EEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc--------cCc---cccccccCCCceEEEecCCCceEE
Confidence 888999999988866 4699999876542 21111000 000 111234455566889999999999
Q ss_pred EEecCCCccc
Q 001178 1090 VIEPSETERK 1099 (1131)
Q Consensus 1090 iW~~~~~~~~ 1099 (1131)
+|.+..+++.
T Consensus 840 ~yEv~~esPy 849 (1012)
T KOG1445|consen 840 MYEVIYESPY 849 (1012)
T ss_pred EEEecCCCce
Confidence 9999887764
No 87
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=2e-26 Score=237.85 Aligned_cols=293 Identities=19% Similarity=0.263 Sum_probs=227.0
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+|+..|+++++.|.|.+ +++|+.|.+|++||......... .|+. +.......|.++.||+.|..|
T Consensus 165 hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr~-------------l~P~E~h~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFRQ-------------LQPCETHQINSLQYSVTGDQI 229 (641)
T ss_pred CCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhhc-------------cCcccccccceeeecCCCCeE
Confidence 57889999999999996 99999999999999976443321 1332 223445689999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccc---------eeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-C-CCceeEEe
Q 001178 425 GVAFTKHLIHLYTYQGSNDLC---------QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L-SGRKLFQF 493 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~---------~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-~~~~~~~~ 493 (1131)
++.+.....+|+|-.+-..+. -...-.||...++|.+|.|+.+. .++||+.|+++|||| . ..+.+..+
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecCCchhheeEE
Confidence 988888899999976643221 12234799999999999999988 799999999999999 2 22333333
Q ss_pred c-----CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE---EecCCCc--eEEEEEEccCCCEEEEEeecC
Q 001178 494 E-----GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGL--WCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 494 ~-----~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~--~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
. +..-+++.++|+ ++++.|++|+.||.|.+|+........ .-..|.. .|+++.||+||++|++-+.
T Consensus 309 k~k~~~g~Rv~~tsC~~n--rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~-- 384 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWN--RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF-- 384 (641)
T ss_pred eeccCCCcccCceeeecC--CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC--
Confidence 2 334467788884 567899999999999999986544332 2344544 8999999999999999876
Q ss_pred CCCceEEEEeCCCCe-eeEEEecccC-CceEEEEEeCCCCEEEEEE------cCCcEEEEEcCCCeEEEEEeccCCCCCc
Q 001178 564 EGDSHLVEWNESEGA-LKRTYIGFRK-KSAGVVQFDTTRNRILAAG------EDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~-~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~i 635 (1131)
|..+++||++..+ ++....+... ..-+.++|||+.+.|++|. ..|.+++||..+.+.++.+..... .|
T Consensus 385 --D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a--Sv 460 (641)
T KOG0772|consen 385 --DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA--SV 460 (641)
T ss_pred --CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc--eE
Confidence 9999999998753 4444433222 1345589999999999976 357899999999999988876643 78
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 636 PRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 636 ~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
..+.|+|.-+.+++|+.||.+++|--
T Consensus 461 v~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 461 VRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred EEEeecchhhheeeecCCCceEEEEC
Confidence 89999999999999999999999754
No 88
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.3e-26 Score=246.40 Aligned_cols=273 Identities=19% Similarity=0.328 Sum_probs=231.9
Q ss_pred CccccccCCCCCcccccCCCcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccc
Q 001178 316 SVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSN 395 (1131)
Q Consensus 316 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 395 (1131)
..+.+++.-+..+..|+........+..++ ...|+++.|+++|+ .||+|..+|.|.|||..+.+.+.
T Consensus 187 s~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~----------- 253 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTR----------- 253 (484)
T ss_pred cCCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhhccccc-----------
Confidence 334455555556778877776655555555 89999999999998 59999999999999998887765
Q ss_pred cccceeceeccC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEE
Q 001178 396 CSMMLQAAIVKD-SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC 474 (1131)
Q Consensus 396 ~~~~~~~~~~~~-h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~ 474 (1131)
.+.+ |...|.+++|+ +..+.+|+.|+.|..+|+...+.... .+.+|...|..+.|++|+. ++++|
T Consensus 254 --------~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASG 319 (484)
T KOG0305|consen 254 --------TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASG 319 (484)
T ss_pred --------cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccC
Confidence 2455 99999999998 77899999999999999998775543 3789999999999999999 89999
Q ss_pred cCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEE--ecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc
Q 001178 475 GDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST--AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA 551 (1131)
Q Consensus 475 s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 551 (1131)
+.|+.+.||| ....++..+..|.+.|.+++|+|... .+||+| +.|+.|++||..++..+.... .+..|.++.|++
T Consensus 320 gnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk 397 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSK 397 (484)
T ss_pred CCccceEeccCCCccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcC
Confidence 9999999999 67888899999999999999999766 578887 479999999998776665543 456799999999
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC
Q 001178 552 DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620 (1131)
Q Consensus 552 ~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1131)
..+-|+++. +..+..|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 398 ~~kEi~sth--G~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 398 KYKELLSTH--GYSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCEEEEec--CCCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 998777764 23467999999999999999999887 7999999999999999999999999998764
No 89
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3e-26 Score=215.92 Aligned_cols=267 Identities=15% Similarity=0.256 Sum_probs=215.7
Q ss_pred cCCCCCcccccCC-CcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccce
Q 001178 322 YPVPSQQATWSLD-DLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMML 400 (1131)
Q Consensus 322 ~s~~~~~~~~~~~-~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1131)
+...|++.+..++ .......+.+.-.+.+..|+||++....+++++.||+++|||+..... +
T Consensus 34 l~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~----P------------- 96 (311)
T KOG0277|consen 34 LAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK----P------------- 96 (311)
T ss_pred cccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc----c-------------
Confidence 3445566666664 333445566778899999999999877899999999999999543221 1
Q ss_pred eceeccCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCc
Q 001178 401 QAAIVKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479 (1131)
Q Consensus 401 ~~~~~~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~ 479 (1131)
...++.|...|.++.|++ +++.+++++.|++|++|+..-++.+. ++.||...|...+|+|.... +++++|.|++
T Consensus 97 -i~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~ 171 (311)
T KOG0277|consen 97 -IHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGT 171 (311)
T ss_pred -hhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCce
Confidence 125789999999999999 56678888999999999998776554 78999999999999998776 8999999999
Q ss_pred EEEEe--CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc-eeEEecCCCceEEEEEEccCC-CE
Q 001178 480 IRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSADG-SR 555 (1131)
Q Consensus 480 i~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g-~~ 555 (1131)
+++|| ..|+.+. +..|...+.++.|+... ...++||+.|+.|+.||+++.+ .+..+.+|+-.|..+.|||.. ..
T Consensus 172 l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~-~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMS-IEAHNSEILCCDWSKYN-HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred EEEEEecCCCceeE-EEeccceeEeecccccC-CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence 99999 5666666 88999999999998644 4799999999999999998865 455788899999999999965 56
Q ss_pred EEEEeecCCCCceEEEEeCCCCe-eeEEEecccCCceEEEEEeCC-CCEEEEEEcCCcEEEEEc
Q 001178 556 LFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTT-RNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~ 617 (1131)
|++++. |-++++||...+. .+.++. ++...+..+.|++- +.++++++-|+.++||+.
T Consensus 250 LaSasY----DmT~riw~~~~~ds~~e~~~-~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 250 LASASY----DMTVRIWDPERQDSAIETVD-HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccc----cceEEecccccchhhhhhhh-ccceEEeccccccccCceeeecccccceeeecc
Confidence 778877 8999999988554 444444 44447777888874 468999999999999984
No 90
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=9.9e-26 Score=232.81 Aligned_cols=296 Identities=17% Similarity=0.252 Sum_probs=226.1
Q ss_pred CCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCC
Q 001178 765 DSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN 844 (1131)
Q Consensus 765 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d 844 (1131)
.|...|.++++.|.|.++++|+-|.++++||+......... ...+.......|.++.||+.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-------------------fr~l~P~E~h~i~sl~ys~T 225 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-------------------FRQLQPCETHQINSLQYSVT 225 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchh-------------------hhccCcccccccceeeecCC
Confidence 37888999999999999999999999999998753222110 00122235678899999999
Q ss_pred CCEEEEEe-CCeEEEEECCCceeEEEE------------eCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce-eE
Q 001178 845 DSYVMSAG-GGKVSLFNMMNFKVMTTF------------MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE-VK 910 (1131)
Q Consensus 845 g~~la~~~-dg~i~vwd~~~~~~~~~~------------~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~-~~ 910 (1131)
|..|++.+ ....+|+|....+..... ++|...++|.+|+|.+...+.+++.||+++||++...+ .+
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 99888887 678999998876554433 47888999999999888899999999999999998543 22
Q ss_pred Eeec-----ccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE-Ee
Q 001178 911 TKLK-----GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NH 984 (1131)
Q Consensus 911 ~~~~-----~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~~ 984 (1131)
.+++ +..-+++.++|++||+++|.|..||.|.+|+..+........+.- .+.....+++|.||+||++|++ |.
T Consensus 306 qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~-AH~~g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD-AHLPGQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred eEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeee-ccCCCCceeEEEeccccchhhhccC
Confidence 3332 344578999999999999999999999999986654433333221 1222258999999999999998 77
Q ss_pred CCeEEEEeCCCcc-cceeeecCCCCCCCeEEEEEccCCCEEEEEe------cCCcEEEEECCCCceeeEecCCccccCCC
Q 001178 985 ETQLAIYDGSKME-CIRQWVPQDVLSSPISSAAYSCNSQLIYATF------TDGSIGVFDADSLRLRCRIAPSAYMSQAS 1057 (1131)
Q Consensus 985 d~~i~vwd~~~~~-~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1057 (1131)
|+.+++||+++.+ ++..+.+.. ...+-+.++||||.++|++|. ..|.+++||..+...+.++....
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~------ 457 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST------ 457 (641)
T ss_pred CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC------
Confidence 9999999999754 333333321 145678899999999999998 35789999999999988887542
Q ss_pred CCCCCccccEEEEEcCCCCCeEEEEecCCcEEE-EecC
Q 001178 1058 PNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV-IEPS 1094 (1131)
Q Consensus 1058 ~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~i-W~~~ 1094 (1131)
..++.+.|||.- +.++.|+.||++++ ||..
T Consensus 458 ------aSvv~~~WhpkL-NQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 458 ------ASVVRCLWHPKL-NQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred ------ceEEEEeecchh-hheeeecCCCceEEEECcc
Confidence 335579999954 67888888998876 5554
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-24 Score=211.94 Aligned_cols=290 Identities=13% Similarity=0.181 Sum_probs=231.6
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
....|.++.|+++|..+++++.|.++++||...+.+. .. + ..+...+..++|....
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~----------------------~t-i-~skkyG~~~~~Fth~~ 68 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV----------------------KT-I-NSKKYGVDLACFTHHS 68 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee----------------------eE-e-ecccccccEEEEecCC
Confidence 5688999999999999999999999999986553322 11 0 1345678888887777
Q ss_pred CEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeE
Q 001178 846 SYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITG 922 (1131)
Q Consensus 846 ~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 922 (1131)
..++.++ |.+|+..++.+++.++.|.+|...|..++.+| .+..+++++.|++|++||++..++...+..- .-..
T Consensus 69 ~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi 145 (311)
T KOG1446|consen 69 NTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPI 145 (311)
T ss_pred ceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecC--CCcc
Confidence 7666665 68899999999999999999999999999999 6788999999999999999988777666533 3345
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCccccee
Q 001178 923 LAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQ 1001 (1131)
Q Consensus 923 l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~ 1001 (1131)
.||.|+|-++|++.....|++||++.-.......+.... ........+.|||||++++.++ .+.+++.|.-+|..+..
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~-~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t 224 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD-NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST 224 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC-CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee
Confidence 789999999999988889999999986544443333332 2237889999999999988865 67799999999999988
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEE
Q 001178 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAV 1081 (1131)
Q Consensus 1002 ~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s 1081 (1131)
+..+.....---+.+|+||++++++|+.||+|.+|++++|.....+.+....+ + .++.|.| .+..-
T Consensus 225 fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~---------~--~~~~fnP---~~~mf 290 (311)
T KOG1446|consen 225 FSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGP---------V--SCVRFNP---RYAMF 290 (311)
T ss_pred EeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCC---------c--cccccCC---ceeee
Confidence 88775434333678999999999999999999999999999999988753211 2 2577888 45666
Q ss_pred EecCCcEEEEecCCCc
Q 001178 1082 GLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1082 ~~~Dg~v~iW~~~~~~ 1097 (1131)
.+.+..+.+|=+...+
T Consensus 291 ~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 291 VSASSNLVFWLPDEDA 306 (311)
T ss_pred eecCceEEEEeccccc
Confidence 6677889999887555
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.2e-24 Score=199.00 Aligned_cols=307 Identities=15% Similarity=0.166 Sum_probs=228.3
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
....|.+++|.|.|...+++++..++++-....-.....+...+...+ .+...-.+.|.+.|.|.+|||+|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp---------~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPP---------SVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCC---------eEEeeeccccCccEEEEEecCcc
Confidence 678899999999999999999998888754322111000100000000 00111123689999999999999
Q ss_pred CEEEEEe-CCeEEEEECCCcee-----EEEEeCCCCCeeEEEEeCC---CCcEEEEEe-CCCcEEEEEeecceeEEeecc
Q 001178 846 SYVMSAG-GGKVSLFNMMNFKV-----MTTFMSPPPASTFLAFHPQ---DNNIIAIGM-EDSTIQIYNVRVDEVKTKLKG 915 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~---~~~~la~g~-~dg~I~iwd~~~~~~~~~~~~ 915 (1131)
++|++|+ |.+|++..+....+ -.++.-|.+.|..++|..+ ++.+|++++ .|..|++-|..+|+....+.+
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG 181 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence 9999999 78888876553322 2356678999999999752 466777765 467788888889999999999
Q ss_pred cccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC-CCCCceEEEEcCCCcEEEEEe-CCeEEEEeC
Q 001178 916 HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGK-LPVGETRVQFHSDQVRLLVNH-ETQLAIYDG 993 (1131)
Q Consensus 916 h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~ 993 (1131)
|.+.|.++- +=+|-.+++|+.|.+|++||+.-..+....-.....+. ..+.|.+++..|.|++|++|. |....+||+
T Consensus 182 htghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 182 HTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 999998873 33588999999999999999987655444332222222 236899999999999999986 888999999
Q ss_pred CCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcC
Q 001178 994 SKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHP 1073 (1131)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p 1073 (1131)
+.++.++.+.+| +..|.++.|||...||++++.|..|++-|++. .+...+..-. .. .+.-..+.+.|+|
T Consensus 261 rg~r~iq~f~ph---sadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~~v-v~------ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 261 RGGRMIQRFHPH---SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPIMV-VA------EHKDKAIQCRWHP 329 (350)
T ss_pred eCCceeeeeCCC---ccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCceEE-EE------eccCceEEEEecC
Confidence 999999999888 89999999999999999999999999999863 3333222111 11 1123456799999
Q ss_pred CCCCeEEEEecCCcEEEEecC
Q 001178 1074 QEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1074 ~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
++ --+++.+.|.++-+|-++
T Consensus 330 ~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 330 QD-FSFISSSADKTATLWALN 349 (350)
T ss_pred cc-ceeeeccCcceEEEeccC
Confidence 75 578899999999999764
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=4.4e-25 Score=209.07 Aligned_cols=247 Identities=16% Similarity=0.220 Sum_probs=209.3
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+.+|...|.+++|+.+|..||+|+.|+++.||+++..+.. ......+|.+.|..++|.|.... .+++++.|++|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-KELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-hhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 5689999999999999999999999999999999987533 33457899999999999998776 799999999999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
.+++++.......+.+.. .| +++|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~i-~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINI-TW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceEE-EE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence 999999888765555553 44 46678999999999999999987666554332 23477788887777666553
Q ss_pred CCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
+.|.|.|.....-+++..+..|.. ...|+.|+|+|+++++|+.|-.+.+||+...-+++.+....- +|..++|+-|
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS~d 242 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFSHD 242 (313)
T ss_pred -CCceEEEEeccccccccccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEeccC
Confidence 278999999999999999999875 677899999999999999999999999999888888776655 8999999999
Q ss_pred CCEEEEEECCCcEEEEecCCC
Q 001178 644 GNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
|++||++++|..|-|=++.+|
T Consensus 243 g~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cceeeccCccceEEeEecccC
Confidence 999999999999998888777
No 94
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.7e-25 Score=240.20 Aligned_cols=278 Identities=16% Similarity=0.268 Sum_probs=235.2
Q ss_pred EEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeC
Q 001178 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT 429 (1131)
Q Consensus 350 V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~ 429 (1131)
.+-++||..+ +||+|. ...|++|+..+++... ...-+...|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~-------------------l~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTE-------------------LCSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEE-------------------eEecCCCceEEEEECCCCCEEEEeec
Confidence 3456778555 578775 4589999999988543 12233789999999999999999999
Q ss_pred CCeEEEEEecCCCccceeeeeec-CcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCcee-EEecCCccCeEEEeec
Q 001178 430 KHLIHLYTYQGSNDLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL-FQFEGHEAPVYSVCPH 506 (1131)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~~-h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~-~~~~~h~~~v~~~~~~ 506 (1131)
+|.|.|||....+.++ .+.+ |...|-+++|. +. .+.+|+.|+.|..+| ...+.. ..+.+|...|+.+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999998876554 5667 99999999998 34 689999999999999 444443 3488999999999995
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc-CCCEEEEEeecCCCCceEEEEeCCCCeeeEEEec
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 585 (1131)
.++.++++|+.|+.+.|||.........+..|...|.+++|+| ....||+|+ +..|++|++||..+|+.+....
T Consensus 311 --~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG--Gs~D~~i~fwn~~~g~~i~~vd- 385 (484)
T KOG0305|consen 311 --PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG--GSADRCIKFWNTNTGARIDSVD- 385 (484)
T ss_pred --CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC--CCcccEEEEEEcCCCcEecccc-
Confidence 5668999999999999999988899999999999999999999 456677764 4569999999999999998877
Q ss_pred ccCCceEEEEEeCCCCEEEE--EEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCC
Q 001178 586 FRKKSAGVVQFDTTRNRILA--AGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
.+..|..+.|++..+-|++ |..++.|.||++.+.+.+..+..|.. .|..++++|||..+++|+.|.++++|++-+
T Consensus 386 -tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 386 -TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred -cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 3447999999999876766 55678999999999999888887765 799999999999999999999999999866
Q ss_pred C
Q 001178 664 G 664 (1131)
Q Consensus 664 ~ 664 (1131)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
No 95
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=247.22 Aligned_cols=274 Identities=18% Similarity=0.233 Sum_probs=212.9
Q ss_pred CCccceEEEEeecCCceEEEeeecceeeEEeecCCCCC-----------------------------CCCcccee-----
Q 001178 765 DSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQN-----------------------------PSGKATAA----- 810 (1131)
Q Consensus 765 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-----------------------------~~~~~~~~----- 810 (1131)
.|.+.|.++.||+||++|+++|.|+.|+||.+...+.. ..+.....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 59999999999999999999999999999998762110 00000000
Q ss_pred eeceeecCCCCcccccCC--CCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCC
Q 001178 811 VAPQHWQPSNGLLMTNDV--PENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDN 887 (1131)
Q Consensus 811 ~~~~~w~~~~~~~~~~~~--~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 887 (1131)
....+.......+...++ ..+|...|..+.||.++- |++++ |.+|+||++...+|++.|. |...|+|++|+|.|.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~f-LLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNF-LLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCe-eEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 000111111111111111 127999999999998765 55555 9999999999999999997 889999999999999
Q ss_pred cEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC--CC
Q 001178 888 NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGK--LP 965 (1131)
Q Consensus 888 ~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~--~~ 965 (1131)
+++++|+-||.|+||++...+.+.-..-+ .-|++++|+|||++.+.|+.+|.+++|+....+......+...... ..
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999988766554444 7899999999999999999999999999998776665555443322 12
Q ss_pred CCceEEEEcCCCc--EEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 001178 966 VGETRVQFHSDQV--RLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR 1042 (1131)
Q Consensus 966 ~~v~~v~~s~d~~--~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1042 (1131)
..|+.++|.|... .|+++.|..|||||..+..++..+.+.....+. ....|+.||++|+++++|..|++|+++...
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ-~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ-ISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcc-eeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 3699999987655 888889999999999999999999987664444 466899999999999999999999985443
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.3e-25 Score=226.82 Aligned_cols=296 Identities=15% Similarity=0.200 Sum_probs=233.4
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeeccc----ccccceeceeccCCCCCEEEEEEcC
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMS----NCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
..|.-+|+||+++||+++ .++++.+|+|.=|++.+|+.... +|.-. .-..+.+..- ++|...|.+++.|+
T Consensus 139 ~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~ 212 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSS 212 (479)
T ss_pred ccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcC
Confidence 358999999999999996 89999999999999999986521 11110 0111111111 48999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
||+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+ .....+.++.+|++
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence 99999999999999999999987655 6899999999999987666 689999999999999 66777888999999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
.|.++... .-.+.+-+|+.|+++++|++. ......+.++...+.+++|-.+. .+++|+. +|.|.+|++...+
T Consensus 288 ~v~~IdaL--~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~~KKk 359 (479)
T KOG0299|consen 288 GVLGIDAL--SRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSLLKKK 359 (479)
T ss_pred ceeeechh--cccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeeecccC
Confidence 99999764 333566667799999999994 45555677788889999998655 5677775 9999999999988
Q ss_pred eeEEEecccC-----------CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC----eEEEEEeccCCCCCcceEEEcCC
Q 001178 579 LKRTYIGFRK-----------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV----NMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 579 ~~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
++.+....|+ ..|++++..|..+++++|+.+|.|++|-+..+ .++..+...+ -|++++|+++
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~G---fVNsl~f~~s 436 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVG---FVNSLAFSNS 436 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccccc---EEEEEEEccC
Confidence 8877653322 16788999999999999999999999998877 3445555433 6899999999
Q ss_pred CCEEEEE-ECCCcEEEEec
Q 001178 644 GNLLVVT-TADQGIKILAN 661 (1131)
Q Consensus 644 ~~~l~~~-~~dg~i~iw~~ 661 (1131)
|+.+++| +....+--|-.
T Consensus 437 gk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 437 GKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred CCEEEEecccccccceeeE
Confidence 9966655 44444444543
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=230.80 Aligned_cols=286 Identities=15% Similarity=0.245 Sum_probs=232.4
Q ss_pred CCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC
Q 001178 764 TDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK 843 (1131)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~ 843 (1131)
....+.|.+++|+|...+=++....-.+.+|+....... .. + ......+.++.|-.
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~----------------------k~-~-srFk~~v~s~~fR~ 78 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVR----------------------KT-F-SRFKDVVYSVDFRS 78 (487)
T ss_pred ccccCcceeEecCCCCCCceEEecccEEEEEecchhhhh----------------------hh-H-HhhccceeEEEeec
Confidence 336688999999998776666666667777764331111 00 0 13577899999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeE
Q 001178 844 NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITG 922 (1131)
Q Consensus 844 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 922 (1131)
||+++|+|+ .|.|+|||+.+...++.+.+|..++..+.|+|+++.++++|++|+.+++||+.+......+.+|++.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999999 7999999988888889999999999999999999999999999999999999999887789999999999
Q ss_pred EEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcc-cce
Q 001178 923 LAFSTN-LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKME-CIR 1000 (1131)
Q Consensus 923 l~~s~d-g~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~-~~~ 1000 (1131)
.+|+|- +..++|||-||.|++||+..... ..... .++.+|..+.+-|.|..++++....++|||+.+|. .+.
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~~----~v~el--nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLTS----RVVEL--NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLT 232 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCCc----eeEEe--cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehh
Confidence 999996 45899999999999999988431 11222 23378999999999999999999999999999554 444
Q ss_pred eeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEE
Q 001178 1001 QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLA 1080 (1131)
Q Consensus 1001 ~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~ 1080 (1131)
....| ...|+|+++..++..|++|+-|+.|++||+.+.+.+..+.. .++|. ++.-+| ++..++
T Consensus 233 ~~~~H---~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-----------~~pvL--siavs~-dd~t~v 295 (487)
T KOG0310|consen 233 SMFNH---NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-----------PGPVL--SIAVSP-DDQTVV 295 (487)
T ss_pred hhhcc---cceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-----------cccee--eEEecC-CCceEE
Confidence 44434 88999999999999999999999999999998888887764 23454 455566 668999
Q ss_pred EEecCCcEEEEecCCC
Q 001178 1081 VGLTDGSVKVIEPSET 1096 (1131)
Q Consensus 1081 s~~~Dg~v~iW~~~~~ 1096 (1131)
.|..||.+.+=+....
T Consensus 296 iGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 296 IGMSNGLVSIRRREVK 311 (487)
T ss_pred Eecccceeeeehhhcc
Confidence 9999998877655433
No 98
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=210.66 Aligned_cols=253 Identities=17% Similarity=0.232 Sum_probs=193.5
Q ss_pred ceEEEEeecCCceEEEeee-cceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCE
Q 001178 769 KVARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1131)
Q Consensus 769 ~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1131)
..+.++|+||-+.+++... ...+++|.+...+. |...-. ..-|| ...+.+.|.-.+-.+-....+++
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~--~v~~D-------~~~f~~kh~v~~i~iGiA~~~k~ 201 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHH--FVHID-------NLEFERKHQVDIINIGIAGNAKY 201 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCcc--ccccc-------ccccchhcccceEEEeecCCceE
Confidence 3457788888776665554 56788887654322 211100 01122 11234457777888888899999
Q ss_pred EEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEee---cc-----eeEEeeccccc
Q 001178 848 VMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR---VD-----EVKTKLKGHQK 918 (1131)
Q Consensus 848 la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~---~~-----~~~~~~~~h~~ 918 (1131)
|++++ |.+|.+|++. |+.+..+......-...+.|| +|++||+++.--.|++|..- .| +.+..++||..
T Consensus 202 imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s 279 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS 279 (420)
T ss_pred EEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh
Confidence 99999 7889999998 899999887777788899999 99999999999999999874 22 34567899999
Q ss_pred CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee-----eecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeC
Q 001178 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA-----IQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDG 993 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~-----~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~ 993 (1131)
.|.+++||++...++|++.||++++||++-.-.....+ ...+..........+.++|.|+.|+++....+.+|..
T Consensus 280 aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~s 359 (420)
T KOG2096|consen 280 AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFAS 359 (420)
T ss_pred heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEc
Confidence 99999999999999999999999999987522111111 1122222335566999999999999999999999999
Q ss_pred CCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 001178 994 SKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
++|+....+... |...|++++|++||+++++++ |..++++.-
T Consensus 360 e~g~~~~~~e~~--h~~~Is~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 360 EDGKDYPELEDI--HSTTISSISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred ccCccchhHHHh--hcCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence 999888777644 489999999999999999998 889998863
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-25 Score=237.83 Aligned_cols=292 Identities=21% Similarity=0.285 Sum_probs=235.5
Q ss_pred CCCcEE---EEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 346 QGSSVV---SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 346 h~~~V~---~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
|...|. ++..+..+.++|.+|+.||.|++|+...-......+ -...+..|.++|+.++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-------------~~asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-------------YIASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc-------------hhhhhhhhHhHHhhHHhhcCCC
Confidence 444455 455554444469999999999999987543321111 0124778999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEE-ecCCCceEEEEEcCCCcEEEEe-CCC--cee--------
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF-SYPNKQLCIVTCGDDKLIRVWD-LSG--RKL-------- 490 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~-s~d~~~~~l~s~s~d~~i~iwd-~~~--~~~-------- 490 (1131)
.|++++.|-+|++|+...+. .....++..|...|.|+++ .++.. ++||||-|+.|.+|| .+| +.+
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998874 1223367889999999999 66666 899999999999999 444 222
Q ss_pred EEec-CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceE
Q 001178 491 FQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1131)
Q Consensus 491 ~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 569 (1131)
..+. |+..+|.+++.+ +.|..|++|+..+.+++||.++...+..+.+|...|..+..++||+.+++++. |++|
T Consensus 164 ~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtI 237 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTI 237 (735)
T ss_pred ccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceE
Confidence 2233 788899999875 45579999999999999999999999999999999999999999999999987 9999
Q ss_pred EEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEE
Q 001178 570 VEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649 (1131)
Q Consensus 570 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~ 649 (1131)
++||+...+++.++..|.. .+.++..+|+-.++++|+.||.|+.-|+.+......+-.+.+ +|..+..+.+.+-+-+
T Consensus 238 rlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~~Wv 314 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNSVWV 314 (735)
T ss_pred EeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCCcee
Confidence 9999999999999999888 599999999999999999999999999988543333333333 6777777765555677
Q ss_pred EECCCcEEEEecC
Q 001178 650 TTADQGIKILANA 662 (1131)
Q Consensus 650 ~~~dg~i~iw~~~ 662 (1131)
++.|+.|+-|...
T Consensus 315 tTtds~I~rW~~~ 327 (735)
T KOG0308|consen 315 TTTDSSIKRWKLE 327 (735)
T ss_pred eeccccceecCCc
Confidence 8889999999754
No 100
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3e-24 Score=209.15 Aligned_cols=241 Identities=20% Similarity=0.263 Sum_probs=204.5
Q ss_pred CCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCc--EEEEEeCCCcEEEEEeecc
Q 001178 831 NAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNN--IIAIGMEDSTIQIYNVRVD 907 (1131)
Q Consensus 831 ~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~la~g~~dg~I~iwd~~~~ 907 (1131)
.|...++++|. +|.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ +.. .|.+|+.||.|.+|+....
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence 69999999998 679999999 89999999999999999999999999999998 543 7889999999999999999
Q ss_pred eeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCe
Q 001178 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQ 987 (1131)
Q Consensus 908 ~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~ 987 (1131)
+++..+++|.+.|+.++.+|.|++-++.+.|+.+++||+-.|+......+. ...+.+.|+|.|.+++++....
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-------~~at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-------NKATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-------CcceeeEEcCCCCEEEEEeccE
Confidence 999999999999999999999999999999999999999998754333322 3345699999999999999999
Q ss_pred EEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccE
Q 001178 988 LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPL 1067 (1131)
Q Consensus 988 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1067 (1131)
|-+|.+.+......+... ..+.++.|. ++.+|++|+.|+.|.+||-+++...+.+.. |...|..+
T Consensus 191 i~i~q~d~A~v~~~i~~~----~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A----------H~~RVK~i 255 (362)
T KOG0294|consen 191 IDIYQLDNASVFREIENP----KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA----------HENRVKDI 255 (362)
T ss_pred EEEEecccHhHhhhhhcc----ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeec----------chhheeee
Confidence 999999988777666543 457777775 677899999999999999998777776654 34445544
Q ss_pred EEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1068 VVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1068 ~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
..--.| +..+|+|+|.||.|++||+....
T Consensus 256 ~~~~~~-~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 256 ASYTNP-EHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred EEEecC-CceEEEEeccCceEEEEEccccc
Confidence 433344 66899999999999999998663
No 101
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=6.9e-24 Score=240.50 Aligned_cols=255 Identities=12% Similarity=0.114 Sum_probs=192.2
Q ss_pred EcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCCc-
Q 001178 366 GCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSND- 443 (1131)
Q Consensus 366 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~~~- 443 (1131)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4556777888765433221 47799999999999996 78999999999999999986432
Q ss_pred c----ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEe
Q 001178 444 L----CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA 518 (1131)
Q Consensus 444 ~----~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 518 (1131)
. .....+.+|...|.+++|+|++.. ++++++.|++|+||| .+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122357899999999999999874 568999999999999 6777776665 667899999965 568999999
Q ss_pred cCCeEEEEeCCCCceeEEecCCCceEEE-----EEEccCCCEEEEEeecCCCCceEEEEeCCC-CeeeEEEecccCC-ce
Q 001178 519 VDGKIKAWLYDNVGSRVDYDAPGLWCTT-----MLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKK-SA 591 (1131)
Q Consensus 519 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~-----~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~-~v 591 (1131)
.|+.|++||++++.....+..|.+.+.. ..|++++.++++++.++..++.|++||++. ++++..+...... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999999888888888764432 345689999999887444456899999985 5566555432221 22
Q ss_pred EEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCC
Q 001178 592 GVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1131)
Q Consensus 592 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~ 644 (1131)
......+++.++++|+.|+.|++|++..+. +..+.......++..++|.|+.
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 223334557888999999999999998764 3334333344577889999864
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=239.18 Aligned_cols=236 Identities=17% Similarity=0.251 Sum_probs=204.0
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCcc---ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC--ceeEE
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQGSNDL---CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG--RKLFQ 492 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~---~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~--~~~~~ 492 (1131)
|++++|.+|+.||.|++|+....... .....+..|...|++++..-+++ .|+|+|.|-+|++|+ ..+ -++.+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCcchhHhh
Confidence 46778999999999999998654321 11346788999999999999998 699999999999999 444 57788
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE----------Eec-CCCceEEEEEEccCCCEEEEEee
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV----------DYD-APGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----------~~~-~~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
+..|...|.|+++. ..+...+++|+-|+.|.+||+.++.... .+. ++...|.+++.++.|..+++|+.
T Consensus 113 ir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred hhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence 99999999999974 3455799999999999999999763311 122 56668999999999999999887
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1131)
.+.|++||.++++.+..+.+|.. .|.++..++||..+++++.||+|++||+...+++.++..|.. .|.++..+
T Consensus 192 ----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~ 264 (735)
T KOG0308|consen 192 ----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSS 264 (735)
T ss_pred ----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeC
Confidence 88999999999999999999887 899999999999999999999999999999999999888766 69999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCC
Q 001178 642 KEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 642 p~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
|+-..+++|+.||.|..=|+.+.
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CCcceEEecCCCCcEEecccCCc
Confidence 99999999999999998887764
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=8e-25 Score=224.03 Aligned_cols=252 Identities=20% Similarity=0.256 Sum_probs=213.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCcccee-------------eee--ecCcCCeeEEEEecCCCc
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQS-------------LEI--DAHVGGVNDLAFSYPNKQ 468 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~-------------~~~--~~h~~~V~~l~~s~d~~~ 468 (1131)
....|.-+|.||+++||+++..+++.+++|.=|++.+++..+-. ... .+|...+.+++.++||+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk- 215 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK- 215 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence 46689999999999999999999999999999999888743100 011 37889999999999999
Q ss_pred eEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEE
Q 001178 469 LCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTM 547 (1131)
Q Consensus 469 ~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1131)
+|++|+.|+.|.||| .+.+.++.+.+|.+.|.+++|-... ..+++++.|+.|++|+++......++-+|...|.++
T Consensus 216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 899999999999999 9999999999999999999996544 579999999999999999988888899999999999
Q ss_pred EEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEe
Q 001178 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1131)
Q Consensus 548 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1131)
....-++.+-+++. |.++++|++.. .....|.++.. .+.|++|-. ..++++|+++|.|.+|++...+++.+..
T Consensus 293 daL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 293 DALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred chhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEee
Confidence 99888887777766 99999999943 34445666544 789999875 4689999999999999999998887654
Q ss_pred ccCC----------CCCcceEEEcCCCCEEEEEECCCcEEEEecCCCch
Q 001178 628 AEGG----------LPSLPRLRFNKEGNLLVVTTADQGIKILANADGLR 666 (1131)
Q Consensus 628 ~~~~----------~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~ 666 (1131)
...+ ...|++++..|...++++|+.+|.|++|.+.++.+
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 3211 11578999999999999999999999999988744
No 104
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.5e-23 Score=228.80 Aligned_cols=504 Identities=15% Similarity=0.209 Sum_probs=316.4
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCc-eEEEEEcCCCcEEEEe-CCCcee
Q 001178 413 SRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQ-LCIVTCGDDKLIRVWD-LSGRKL 490 (1131)
Q Consensus 413 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~-~~l~s~s~d~~i~iwd-~~~~~~ 490 (1131)
..-.||+|+++++.... ..|.||...+|.++. .+.+|..++..+.+.|.... .++++++.||.|++|| ..+..+
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 34569999999987764 589999999998876 68999999999999987663 3788999999999999 788887
Q ss_pred EEecCCccCeEEEeecc------------cCCccEEEEEecC--CeEEEEeCCCCcee-EEecCCCceEEEEEEccCCCE
Q 001178 491 FQFEGHEAPVYSVCPHQ------------KENIHFIFSTAVD--GKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSADGSR 555 (1131)
Q Consensus 491 ~~~~~h~~~v~~~~~~~------------~~~~~~l~s~s~d--g~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~ 555 (1131)
.++..+. ++..+.+.+ ..+-..+.+.+.+ +.++-+.+.+.... ..+......-.++.+++.|.+
T Consensus 96 kt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 96 KTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 7776432 233322211 1111111111111 11111111110000 000001111357888888888
Q ss_pred EEEEeecCCCCceEEEEeCCCCeee---EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC--CeEEEEEeccC
Q 001178 556 LFSCGTSKEGDSHLVEWNESEGALK---RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN--VNMLTSTEAEG 630 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~ 630 (1131)
.+.+. +..+.+|+...+... +....+|...+++.+++|++++++++..||.|.+|.--. +........|-
T Consensus 175 ~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 175 KGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred EEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 77765 667899988775411 112233433578999999999999999999999996443 33333333445
Q ss_pred CCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCC
Q 001178 631 GLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSS 710 (1131)
Q Consensus 631 ~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~ 710 (1131)
|...|.+++|+++|.+|++|+..|.+.+|.+.++.+. |-|.
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq----------------------------fLPR----------- 290 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ----------------------------FLPR----------- 290 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcc----------------------------cccc-----------
Confidence 5558999999999999999999999999998776210 1111
Q ss_pred CCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecce
Q 001178 711 PARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGV 790 (1131)
Q Consensus 711 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 790 (1131)
T Consensus 291 -------------------------------------------------------------------------------- 290 (792)
T KOG1963|consen 291 -------------------------------------------------------------------------------- 290 (792)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEE
Q 001178 791 QKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTT 869 (1131)
Q Consensus 791 i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~ 869 (1131)
-..+|..+.+|||+.+.+... |+.|.+....+.+...+
T Consensus 291 -----------------------------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 291 -----------------------------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred -----------------------------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 233444455555555444443 55555554444333333
Q ss_pred EeC-----------CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec-----------ccccCeeEEEEcc
Q 001178 870 FMS-----------PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-----------GHQKHITGLAFST 927 (1131)
Q Consensus 870 ~~~-----------~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~-----------~h~~~V~~l~~s~ 927 (1131)
+.+ ..+-.+.++++| ..+.++..+..|.|++||+-+.+.+..+. .+.-.|++++.+-
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~ 408 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR 408 (792)
T ss_pred ccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc
Confidence 221 123466788888 66777888899999999998876665543 2334588899999
Q ss_pred CCCEEEEEeC--------CC--cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCc-EEE-EEeCCeEEEEeCCC
Q 001178 928 NLNILVSSGS--------DA--QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV-RLL-VNHETQLAIYDGSK 995 (1131)
Q Consensus 928 dg~~l~s~~~--------Dg--~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~-~l~-~~~d~~i~vwd~~~ 995 (1131)
.|.+++|.-. || .+++|-.............+...|....+..+.+++... .++ ++.||.++||-...
T Consensus 409 ~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~ 488 (792)
T KOG1963|consen 409 FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD 488 (792)
T ss_pred cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEec
Confidence 9999998743 33 578998877655444433333333333444444444333 444 45799999998843
Q ss_pred ccccee-------eecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC-CceeeEecCCccccCCCCCCCCccccE
Q 001178 996 MECIRQ-------WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS-LRLRCRIAPSAYMSQASPNSSQTVFPL 1067 (1131)
Q Consensus 996 ~~~~~~-------~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1067 (1131)
.+.+.. ...+..|..++++.+||.||..|+++. |++|.+||..+ ..+.+... ....+. .+
T Consensus 489 ~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~-~~~Itiwd~~~~~~l~~~~~-~~~~~~-----~~----- 556 (792)
T KOG1963|consen 489 DSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF-DDTITIWDYDTKNELLCTEG-SRNWPI-----AE----- 556 (792)
T ss_pred ccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEec-CCEEEEecCCChhhhhcccc-ccccch-----Hh-----
Confidence 222111 111223588999999999998777665 89999999998 44443332 221111 11
Q ss_pred EEEEcCCC-CCeEEEEecCCcEEEEecCCCcccc
Q 001178 1068 VVTSHPQE-PNQLAVGLTDGSVKVIEPSETERKW 1100 (1131)
Q Consensus 1068 ~v~~~p~~-~~~l~s~~~Dg~v~iW~~~~~~~~w 1100 (1131)
.+|..+. ....+....-+++.+|++....-.|
T Consensus 557 -~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 557 -LLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred -HhhhcccccccceeeccCceEehHhhhhhheec
Confidence 1221111 1234445557789999999999889
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.1e-24 Score=233.74 Aligned_cols=281 Identities=16% Similarity=0.305 Sum_probs=237.3
Q ss_pred eeeecc-CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEE-EEE
Q 001178 340 VACTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR-VAW 417 (1131)
Q Consensus 340 ~~~~~~-h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~ 417 (1131)
+.+.++ |.+.|..+++.+.. .+++||.||++++|+-..++.+.. +.+.+|.+.|.+ ++|
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y 66 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICY 66 (745)
T ss_pred eEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeecccee
Confidence 344554 99999999998877 488999999999999876665532 246688888888 888
Q ss_pred cC-CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCC
Q 001178 418 SP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH 496 (1131)
Q Consensus 418 sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h 496 (1131)
-+ |+-+|++|+.|.+|.+|...+...+. .+.+|...|.++....++. ++|||.|.++++|- .+++...+.+|
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~-~~~l~~~l~gH 139 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR-IGELVYSLQGH 139 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec-chhhhcccCCc
Confidence 86 55579999999999999999877554 7899999999999888876 89999999999997 45566679999
Q ss_pred ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
+..|++++..+.. .++|||.|++|++|.- ++....+.+|...|+.+++-+++. +++|+. ||.|+.|++ +
T Consensus 140 ~asVWAv~~l~e~---~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsN----Dg~Ir~w~~-~ 208 (745)
T KOG0301|consen 140 TASVWAVASLPEN---TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN----DGSIRLWDL-D 208 (745)
T ss_pred chheeeeeecCCC---cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecC----CceEEEEec-c
Confidence 9999999876543 8999999999999964 567778899999999999998876 456665 999999998 7
Q ss_pred CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001178 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1131)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i 656 (1131)
|..+..+.+|.+ -+.++....++..++++++|++++||+.. ++.+.+..++. .|.++.+-++|. +++|+.||.|
T Consensus 209 ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~V 282 (745)
T KOG0301|consen 209 GEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGRV 282 (745)
T ss_pred Cceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCceE
Confidence 889999999877 78899988888999999999999999976 77777777654 688898888886 6789999999
Q ss_pred EEEecCC
Q 001178 657 KILANAD 663 (1131)
Q Consensus 657 ~iw~~~~ 663 (1131)
+||....
T Consensus 283 rVfT~~k 289 (745)
T KOG0301|consen 283 RVFTVDK 289 (745)
T ss_pred EEEEecc
Confidence 9998763
No 106
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=3.6e-24 Score=242.57 Aligned_cols=249 Identities=16% Similarity=0.228 Sum_probs=199.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCcc----------ceeeeeecCcCCeeEEEEec-CCCceEEEEEcC
Q 001178 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL----------CQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGD 476 (1131)
Q Consensus 408 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~----------~~~~~~~~h~~~V~~l~~s~-d~~~~~l~s~s~ 476 (1131)
|-..|.....++|+..+++++.+.....|+..++..+ .....+.+|.+.|++++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3455667777788777777777777777876544321 11224789999999999999 777 7999999
Q ss_pred CCcEEEEe-CCC-------ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEE
Q 001178 477 DKLIRVWD-LSG-------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTML 548 (1131)
Q Consensus 477 d~~i~iwd-~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1131)
|++|++|| .++ ..+..+.+|...|.+++|+|.. ..+|++++.|++|++||++++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 99999999 433 3567889999999999998754 36899999999999999999888888888999999999
Q ss_pred EccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE----cCCcEEEEEcCCCe-EE
Q 001178 549 YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDNVN-ML 623 (1131)
Q Consensus 549 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 623 (1131)
|+|+|.+|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. .+
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999986 999999999999999898887765556678888888887755 47899999998754 33
Q ss_pred EEEeccCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEecCCC
Q 001178 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTT-ADQGIKILANADG 664 (1131)
Q Consensus 624 ~~~~~~~~~~~i~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~ 664 (1131)
.....+ ....+....|+++++++++++ .|+.|++||+.++
T Consensus 252 ~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 252 STVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred eEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 333322 222455677899999999887 5999999999876
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=3.3e-24 Score=217.29 Aligned_cols=284 Identities=17% Similarity=0.200 Sum_probs=243.1
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 426 (1131)
...|+++...|... .+.+|+.|.++.++|..+++.+. +++||...|+.+.|+|+...+++
T Consensus 219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~-------------------~~~Gh~kki~~v~~~~~~~~v~~ 278 (506)
T KOG0289|consen 219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILA-------------------TLKGHTKKITSVKFHKDLDTVIT 278 (506)
T ss_pred CCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhh-------------------hccCcceEEEEEEeccchhheee
Confidence 34788888888743 68999999999999999988876 68899999999999999999999
Q ss_pred EeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecC--CccCeEEE
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG--HEAPVYSV 503 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~--h~~~v~~~ 503 (1131)
++.|..|+||......+.. ....|..+|+.+...|.|. ||++++.|++..+.| .+|..+..... ..-.+++.
T Consensus 279 aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~ 353 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA 353 (506)
T ss_pred cCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence 9999999999998766433 4678999999999999999 899999999999999 88888776653 23457888
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
+||| ||.++.+|+.||.|++||+.+......|.+|.++|..+.|+.+|-+|++++. |+.|++||++..+..+++
T Consensus 354 ~fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 354 AFHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred eEcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhccccee
Confidence 8875 6689999999999999999999999999999999999999999999999986 888999999998888888
Q ss_pred ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
.......+.++.|.+.|.+++.++.|=.|++++-.+.+.......+.+.+..+.+.|....+++++++.|..++++.+
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 876666799999999999999998877777777555443333333344446789999999999999999999888754
No 108
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4e-24 Score=207.88 Aligned_cols=202 Identities=19% Similarity=0.294 Sum_probs=157.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCC-----ccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN-----DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~-----~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 478 (1131)
++++|.+.|++++||.||++||+++.|++|++|+++.-. +++...++ +.-+.++|+||-+. .++++-...
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~----dhpT~V~FapDc~s-~vv~~~~g~ 155 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY----DHPTRVVFAPDCKS-VVVSVKRGN 155 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC----CCceEEEECCCcce-EEEEEccCC
Confidence 689999999999999999999999999999999997622 22222221 23688999999986 677777778
Q ss_pred cEEEEeC----CCceeEE---------ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEE
Q 001178 479 LIRVWDL----SGRKLFQ---------FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCT 545 (1131)
Q Consensus 479 ~i~iwd~----~~~~~~~---------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1131)
++++|.. +|..... -+.|...+..+-+ .+++.+|++++.|..|.+|+++ ++.+..+......-+
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY 232 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence 8999972 2332211 1245556665554 4677899999999999999998 667767776666677
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCC---CC-----eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEc
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNES---EG-----ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~---~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1131)
..+.||+|+++++++. ..-+.+|.+- .| ..+..+.+|.. .|...+|+++...+++.+.||++++||.
T Consensus 233 ~aavSP~GRFia~~gF----TpDVkVwE~~f~kdG~fqev~rvf~LkGH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGF----TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ceeeCCCCcEEEEecC----CCCceEEEEEeccCcchhhhhhhheeccchh-heeeeeeCCCcceeEEEecCCcEEEeec
Confidence 8899999999999987 5568999852 22 23456778766 8999999999999999999999999997
Q ss_pred C
Q 001178 618 D 618 (1131)
Q Consensus 618 ~ 618 (1131)
+
T Consensus 308 d 308 (420)
T KOG2096|consen 308 D 308 (420)
T ss_pred c
Confidence 5
No 109
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=7.3e-25 Score=247.77 Aligned_cols=259 Identities=20% Similarity=0.327 Sum_probs=219.3
Q ss_pred cccccCCCcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccC
Q 001178 328 QATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407 (1131)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1131)
+..|+............+|.+.|++++|..-+ .+|++|+.|.+++|||+.+|++.. ++.+
T Consensus 230 l~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C~~-------------------~l~g 289 (537)
T KOG0274|consen 230 LHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGECTH-------------------SLQG 289 (537)
T ss_pred eEEeecccceEEEeeccCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcEEE-------------------EecC
Confidence 44555544333333345799999999999844 479999999999999999999987 5789
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CC
Q 001178 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LS 486 (1131)
Q Consensus 408 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~ 486 (1131)
|...|.++..- +.++++|+.|.+|++|++.++.++. .+.+|.++|.++... +. ++++|+.|++|++|| .+
T Consensus 290 h~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~---l~~~h~~~V~~v~~~--~~--~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 290 HTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLN---LLRGHTGPVNCVQLD--EP--LLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred CCceEEEEEcc--CceEeeccCCceEEEEeccCcceEE---EeccccccEEEEEec--CC--EEEEEecCceEEEEEhhh
Confidence 99999998875 4578889999999999999988775 566799999999998 55 899999999999999 99
Q ss_pred CceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC-ceeEEecCCCceEEEEEEccCCCEEEEEeecCCC
Q 001178 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
++++..+.+|...|.++.+... ..+++|+.|++|++||+++. ++...+..|..-+..+. ..+++|++++.
T Consensus 361 ~~cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~a---- 431 (537)
T KOG0274|consen 361 GKCLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSA---- 431 (537)
T ss_pred ceeeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccc----
Confidence 9999999999999999976432 68999999999999999999 88888888888775444 45788999887
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEE
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST 626 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1131)
|+.|++||..++++++.+.+.+...+.++++. ...+++++.||.+++||+.++.....+
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 89999999999999999998543477777765 478999999999999999999887765
No 110
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=9.5e-26 Score=223.21 Aligned_cols=282 Identities=13% Similarity=0.194 Sum_probs=228.3
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+|.+.|.|++=+|..-..+|+|+.||.|+|||+.+.++.. .+..|.+.|..+++.. ..+
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------~f~AH~G~V~Gi~v~~--~~~ 122 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------TFKAHEGLVRGICVTQ--TSF 122 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------eeecccCceeeEEecc--cce
Confidence 5999999999999874469999999999999999888776 5789999999999987 678
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
++++.|++|+.|.++.. ...++.+ ...+..+.-+..+. .++|||. .|-||| ....++..+.--...|.++
T Consensus 123 ~tvgdDKtvK~wk~~~~----p~~tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~sv 193 (433)
T KOG0268|consen 123 FTVGDDKTVKQWKIDGP----PLHTILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSV 193 (433)
T ss_pred EEecCCcceeeeeccCC----cceeeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeEE
Confidence 89999999999998873 2223433 34567777776666 7899986 589999 7788888888778889999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC-eeeEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRT 582 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 582 (1131)
.|+|... .+|++++.|+.|.+||++....+..... ...-+.++|+|.+-.++++.. |..++.+|++.- .++..
T Consensus 194 kfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E----D~nlY~~DmR~l~~p~~v 267 (433)
T KOG0268|consen 194 KFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE----DHNLYTYDMRNLSRPLNV 267 (433)
T ss_pred ecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc----cccceehhhhhhcccchh
Confidence 9998765 6888888999999999998877765432 234578999996666666654 999999999864 45566
Q ss_pred EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
+.+|-. .|..+.|+|.|+-+++|+.|.+|+||..+.+........ .....|.++.|+-|.+++++|++|+.|++|...
T Consensus 268 ~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 268 HKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 666554 889999999999999999999999999987754333221 122368999999999999999999999999875
Q ss_pred CC
Q 001178 663 DG 664 (1131)
Q Consensus 663 ~~ 664 (1131)
..
T Consensus 346 As 347 (433)
T KOG0268|consen 346 AS 347 (433)
T ss_pred hh
Confidence 43
No 111
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.8e-24 Score=207.16 Aligned_cols=250 Identities=16% Similarity=0.190 Sum_probs=195.0
Q ss_pred ccCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 405 VKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 405 ~~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
-....+.|.+++||| ...++++++.|++||+|+++....+.. .....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 446788999999999 555677899999999999987432322 34677999999999999998 79999999999999
Q ss_pred eCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 484 DLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 484 d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
|+....+..+..|.++|.++.|.+......|++||.|++|++||.+.......+..... +.++..- ..+++++..
T Consensus 100 DL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv~--~pm~vVata-- 174 (347)
T KOG0647|consen 100 DLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADVL--YPMAVVATA-- 174 (347)
T ss_pred EccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhcc--CceeEEEec--
Confidence 94444777888899999999998877777999999999999999998888877765543 4444333 234444443
Q ss_pred CCCceEEEEeCCCCeee-EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC--eEEEEEeccCC-------CC
Q 001178 564 EGDSHLVEWNESEGALK-RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTEAEGG-------LP 633 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~ 633 (1131)
+..|.+|+++++... +.....-...+.+++..++....+.|+-+|.+-|..++.+ +.-..++.|.. .-
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 788999999776433 2233333346888998899888899999999999998876 33334444432 23
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 634 SLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 634 ~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.|++++|+|.-..|++++.||++.+||-...
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh
Confidence 5788999999999999999999999996544
No 112
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=1.2e-25 Score=226.45 Aligned_cols=247 Identities=19% Similarity=0.283 Sum_probs=209.0
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|..++|+++.|.++++ .+++.+.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence 366899999999999999999999999999999998876 334447888889999999999999 79999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
+ -+.+...++.+|++.|+++.|.... ..+++|+.|.+|+.||+....+..... ....+..++.+ ...++++..
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~- 320 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF- 320 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc-
Confidence 9 7888899999999999999986544 349999999999999998865554332 33345556555 445556554
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCC--CCCcceEEE
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG--LPSLPRLRF 640 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~i~~v~~ 640 (1131)
|++|+.||.+++.+......+. .|+++..++++..+++.+.|.++.+.|+.+.+....+...+. ....+.+.|
T Consensus 321 ---DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 321 ---DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ---ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 8889999999999998888643 799999999999999999999999999999988888765532 225788999
Q ss_pred cCCCCEEEEEECCCcEEEEecCCC
Q 001178 641 NKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 641 sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
||++.|+++|+.||.|+||++.++
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCc
Confidence 999999999999999999999877
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=5e-24 Score=215.99 Aligned_cols=240 Identities=17% Similarity=0.298 Sum_probs=198.4
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
|...|+.+.++++...+++++.|..|++|......... ....|..+|+.+...|.|
T Consensus 260 h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~------------------------~~~~h~~~V~~ls~h~tg 315 (506)
T KOG0289|consen 260 HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT------------------------SSRPHEEPVTGLSLHPTG 315 (506)
T ss_pred cceEEEEEEeccchhheeecCCcceEEeeccccccCcc------------------------ccccccccceeeeeccCC
Confidence 67778889999999999999999999999865532111 112589999999999999
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEEeC--CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeE
Q 001178 846 SYVMSAG-GGKVSLFNMMNFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITG 922 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 922 (1131)
+||++++ |+++.+.|+.++.++..... ..-.+++.+|+| ||.++++|+.||.|+|||+.++..+..|.+|.++|..
T Consensus 316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKA 394 (506)
T ss_pred cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeE
Confidence 9999999 79999999999998877654 334589999999 9999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCC--Ccccc
Q 001178 923 LAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGS--KMECI 999 (1131)
Q Consensus 923 l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~--~~~~~ 999 (1131)
++|+.+|-+||++..|+.|++||+...+......+. .. .++.++.|.+.|.+|+.+ .+=.|++++-. +..++
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~--~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD--EK---KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhcccceeecc--cc---ccceeEEEcCCCCeEEeecceeEEEEEecccccceee
Confidence 999999999999999999999999986643333322 11 368999999999999986 23344444422 45555
Q ss_pred eeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 001178 1000 RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 1000 ~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
..+..+ .+..+.+.|..+.+++++++.|..++++.+
T Consensus 470 ~~~~~~---sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 470 KELADH---SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ehhhhc---ccccceeeecccceEEeeccchhheEEeec
Confidence 555554 778999999999999999999999888764
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=210.03 Aligned_cols=296 Identities=13% Similarity=0.187 Sum_probs=240.6
Q ss_pred cceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 338 RAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 338 ~~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
-++++.+ +|.+.|+.++...... ++.+++.|.+.+||.+++|+++. .+.||.+.|+|++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~-------------------~Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLA-------------------TYTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeecccccee-------------------eecccccceeeEE
Confidence 3445555 5999999999877655 89999999999999999999987 4789999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEe------cC--------C-----------------------CccceeeeeecCcCCeeE
Q 001178 417 WSPDGNFIGVAFTKHLIHLYTY------QG--------S-----------------------NDLCQSLEIDAHVGGVND 459 (1131)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~------~~--------~-----------------------~~~~~~~~~~~h~~~V~~ 459 (1131)
|++.+.++++++.|++..||.. .. + ..-.+...+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999962 11 0 001123568899999999
Q ss_pred EEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc-eeEEe
Q 001178 460 LAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDY 537 (1131)
Q Consensus 460 l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~ 537 (1131)
..|...|+ .+++++.|++..+|| .+|..+..+.||....+.++-+|.. +++++.+.|.+.++||++..- ....|
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence 99999999 699999999999999 9999999999999999999887655 789999999999999998543 34478
Q ss_pred cCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe-eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 001178 538 DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616 (1131)
Q Consensus 538 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 616 (1131)
.+|...|+++.|..+.+ +++++. |.+|++||+++.+ ++.++. .+.+++.++++..++.++.--++..|++||
T Consensus 354 QGHtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeee--cCCccceeEeecCCceEEeccCCceEEEEe
Confidence 99999999999998765 566664 8999999998754 555665 344788899998888888888999999999
Q ss_pred cCCCeEEEEE--eccCCCCCcceEEEcCCC--CEEEEEECCCcEEEEecCCC
Q 001178 617 MDNVNMLTST--EAEGGLPSLPRLRFNKEG--NLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 617 ~~~~~~~~~~--~~~~~~~~i~~v~~sp~~--~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++........ ...+|..-|+|++|..+. .-|++++.|..+.-|.+...
T Consensus 427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9765433222 233455578999997653 34788899999999988654
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.4e-23 Score=204.43 Aligned_cols=268 Identities=18% Similarity=0.277 Sum_probs=213.6
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
..+.|++|.|+|.+.. |++++-||++++||+...+... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 4679999999999886 5556799999999998875442 225789999999997 45788
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCC-ceeEEecCCccCeEEEe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG-RKLFQFEGHEAPVYSVC 504 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~h~~~v~~~~ 504 (1131)
+|+.||.|+.+|+.++... .+..|..+|.|+.+++-.. .+++||.|++|++||..+ .....+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 9999999999999998755 3678999999999998776 799999999999999433 3333333 344788886
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCceeEEecC--CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC----e
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG----A 578 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~----~ 578 (1131)
. .++.|+.|+.|..|.+||+++......... -.-.+.++++-|++.-.++++. +|+|.+=..... .
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQS 214 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhh
Confidence 4 346899999999999999998776653322 2337899999998887888776 888877655544 3
Q ss_pred eeEEEecccC--------CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001178 579 LKRTYIGFRK--------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1131)
Q Consensus 579 ~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~ 650 (1131)
....|+.|.. .+|++++|+|--+.|++|+.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||++
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEE
Confidence 3445665543 26889999999899999999999999999999888877654 3379999999999999998
Q ss_pred EC
Q 001178 651 TA 652 (1131)
Q Consensus 651 ~~ 652 (1131)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 75
No 116
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.1e-25 Score=218.76 Aligned_cols=241 Identities=16% Similarity=0.262 Sum_probs=197.0
Q ss_pred ccCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 405 VKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg-~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
+.||.+.|.|++=+|.. ..+|+|+.||.|++||+....+.. .+.+|.+.|..|++.. . .++++|+|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--c--ceEEecCCcceeee
Confidence 57999999999999987 789999999999999999877665 7899999999999987 3 58999999999999
Q ss_pred eCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 484 DLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 484 d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
-..+..+.++.+. ..+..+.-+ ..+..++|++. .|.|||.....++..+......|.++.|+|....++.++.
T Consensus 135 k~~~~p~~tilg~-s~~~gIdh~--~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 135 KIDGPPLHTILGK-SVYLGIDHH--RKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA-- 207 (433)
T ss_pred eccCCcceeeecc-ccccccccc--cccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--
Confidence 9888777776543 334455432 22356777764 5899999988888888888888999999998776655442
Q ss_pred CCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe-EEEEEeccCCCCCcceEEEcC
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN-MLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~v~~sp 642 (1131)
.|+.|.+||++++.+++.+... ..-+.++|+|.+-.+++|++|..++.||++..+ ++..... +...|.++.|+|
T Consensus 208 -sDrsIvLyD~R~~~Pl~KVi~~--mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d--hvsAV~dVdfsp 282 (433)
T KOG0268|consen 208 -SDRSIVLYDLRQASPLKKVILT--MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD--HVSAVMDVDFSP 282 (433)
T ss_pred -cCCceEEEecccCCccceeeee--ccccceecCccccceeeccccccceehhhhhhcccchhhcc--cceeEEEeccCC
Confidence 2899999999999988776532 246679999977788889999999999998743 4444444 444899999999
Q ss_pred CCCEEEEEECCCcEEEEecCCC
Q 001178 643 EGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.|+-+++|+.|.+|+||....+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred CcchhccccccceEEEeecCCC
Confidence 9999999999999999998765
No 117
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.6e-24 Score=222.75 Aligned_cols=292 Identities=15% Similarity=0.218 Sum_probs=233.3
Q ss_pred ceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 339 ~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
+.++++.|+.-|.++++|...++ +.||+ .|-|+|||+....-.. ++. +.. .-....-|.++.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trh-VyTgG-kgcVKVWdis~pg~k~--Pvs-----------qLd-cl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISQPGNKS--PVS-----------QLD-CLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcce-eEecC-CCeEEEeeccCCCCCC--ccc-----------ccc-ccCcccceeeeEec
Confidence 45667889999999999999985 88887 5789999997542211 110 111 11235679999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCc
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE 497 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~ 497 (1131)
|||+.|++|+.-.++.|||+..... +...++..-.-...+++.+||.+ +.++|..||.|.||| .+...+..|.||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987542 22223443344678899999999 899999999999999 6677789999999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1131)
+.+.|+.+ +.+|..|.+|+-|++||.||++++........ ...|.++.++|++.+++++-. ++.+.+......
T Consensus 552 DGascIdi--s~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~skp 624 (705)
T KOG0639|consen 552 DGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTSKP 624 (705)
T ss_pred CCceeEEe--cCCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecCCc
Confidence 99999998 46778999999999999999998877765443 346999999999999999976 677777765432
Q ss_pred eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001178 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1131)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~ 657 (1131)
....+.. +...|.++.|.+.|+++++.+.|+.+..|...-|..+...+.. ..|.++.++.|.+++++|+.|....
T Consensus 625 -~kyqlhl-heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 625 -EKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred -cceeecc-cccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceE
Confidence 3333333 4448999999999999999999999999999988877666543 3799999999999999999999888
Q ss_pred EEec
Q 001178 658 ILAN 661 (1131)
Q Consensus 658 iw~~ 661 (1131)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8865
No 118
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.7e-20 Score=206.84 Aligned_cols=277 Identities=17% Similarity=0.218 Sum_probs=222.8
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.|...-+.++|.|+|. +|.+++.||.|++|+...-.... .++.-++..|.+++.. +.+|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P------------------~ti~~~g~~v~~ia~~--s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEP------------------ETIDISGELVSSIACY--SNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCC------------------chhhccCceeEEEeec--ccce
Confidence 4888899999999998 68899999999999987653111 0222367778777764 4599
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
++|+.+++|.+|...+++.-.. +..-+-++++++|+-+|+ +++.||.|-.|++-+ .++.....+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~i---L~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDTI---LARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccce---eeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 9999999999999988764321 333456799999999999 899999999999999 8888889999999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecC-------C-CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-------P-GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
.++| ++.+|++.+.||.|++|+++++.....+.. . ...+..++|+|+|..++..+. ++.|.+|+..
T Consensus 145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 9965 558999999999999999998766554332 2 346788999999777777665 8999999999
Q ss_pred CCeeeEEEecccCC-ceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCC
Q 001178 576 EGALKRTYIGFRKK-SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg 654 (1131)
+......+...... .+..+.|+|.|.|||+++.||.|.|||.++.+. |.....|.+++|.|+.+-+-.-...|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 98888877654433 388899999999999999999999999998322 33344799999999988776666666
Q ss_pred cEEEE
Q 001178 655 GIKIL 659 (1131)
Q Consensus 655 ~i~iw 659 (1131)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 55554
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.6e-23 Score=202.66 Aligned_cols=243 Identities=19% Similarity=0.256 Sum_probs=203.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+..|.++|+++|.+ |.++|+|+.|-+|+|||+.....+. .+..|.+.|+++.|.++-..-.|++|+.||.|.+|
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 467899999999985 8999999999999999999876554 57789999999999998743359999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
+ ..-.++..+++|.+.|+.++++|++ ++.++.+.|+.+++||+-.++.-........ -+.+.|+|.|.+++..+
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-- 187 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-- 187 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe--
Confidence 9 7788999999999999999998865 7888999999999999988877665554333 34599999999888886
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEE--
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF-- 640 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~-- 640 (1131)
...|-+|.+.+......+... ..+.++.|. ++..+++|++|+.|.+||.+...+...+..|.. .|.++.+
T Consensus 188 ---~~~i~i~q~d~A~v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~ 259 (362)
T KOG0294|consen 188 ---RNKIDIYQLDNASVFREIENP--KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYT 259 (362)
T ss_pred ---ccEEEEEecccHhHhhhhhcc--ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEe
Confidence 567999998887766655432 246666665 567899999999999999999888888877765 7888874
Q ss_pred cCCCCEEEEEECCCcEEEEecCCC
Q 001178 641 NKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 641 sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.|++.+|++++.||.|++||+...
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 567889999999999999998765
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.7e-24 Score=203.01 Aligned_cols=252 Identities=20% Similarity=0.303 Sum_probs=208.2
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEec--CCCceEEEEEcCCCcEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY--PNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~--d~~~~~l~s~s~d~~i~ 481 (1131)
+...|.+.|..+...--|++||+|+.|++|+|+.+++........+|.||.++|+.++|.. -|. +|++|+.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 5678999999999999999999999999999999998776667778999999999999987 677 899999999999
Q ss_pred EEe-CCCc--eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc---eeEEecCCCceEEEEEEccC---
Q 001178 482 VWD-LSGR--KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG---SRVDYDAPGLWCTTMLYSAD--- 552 (1131)
Q Consensus 482 iwd-~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~--- 552 (1131)
||. ..|+ .......|...|++++|.|..-|-.|++++.||.|.+.+++... .......|...|++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999 5443 34556789999999999999999999999999999999988762 22345667788999999986
Q ss_pred C-----------CEEEEEeecCCCCceEEEEeCCCCe--eeEEEecccCCceEEEEEeCCC----CEEEEEEcCCcEEEE
Q 001178 553 G-----------SRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKKSAGVVQFDTTR----NRILAAGEDNQIKFW 615 (1131)
Q Consensus 553 g-----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~iw 615 (1131)
| +.|++++. |..|.+|+..++. ..+++.+|.+ .|+.++|.|.- .++++++.||++.||
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 4 56899987 9999999988764 3345777776 89999999975 489999999999999
Q ss_pred EcCCC-eEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 616 DMDNV-NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 616 d~~~~-~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
..... +.-.....+.....+..+.|+..|++|++++.|+.+.+|.-.
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 87632 221111122233468999999999999999999999999743
No 121
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=204.26 Aligned_cols=322 Identities=16% Similarity=0.272 Sum_probs=239.1
Q ss_pred eeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEe
Q 001178 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWL 527 (1131)
Q Consensus 449 ~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd 527 (1131)
.+.||...|+.++-..... .+.+++.|.+.+||. .+|+|+.++.||.+.|+++.|+++. .++++++.|++-+||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~--~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG--LLLLTASGDETAHIWK 218 (481)
T ss_pred hhcccccceeeehhhcCCc--ceeecccccceeEEeeccccceeeecccccceeeEEecccc--ceEEEccCCcchHHHH
Confidence 5789999999999876655 899999999999999 9999999999999999999998754 7999999999999996
Q ss_pred CCCCceeEEe---cCCCceEEEEEEc-cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEE
Q 001178 528 YDNVGSRVDY---DAPGLWCTTMLYS-ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI 603 (1131)
Q Consensus 528 ~~~~~~~~~~---~~~~~~v~~~~~s-~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 603 (1131)
..-.-..... ..|... ..+.-+ .+.. ...++...| ..+| ..++..+.+|.. .|.+..|-..|+.+
T Consensus 219 ~av~~~vP~~~a~~~hSsE-eE~e~sDe~~~-d~d~~~~sD-~~ti-------RvPl~~ltgH~~-vV~a~dWL~gg~Q~ 287 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSE-EEEEHSDEHNR-DTDSSEKSD-GHTI-------RVPLMRLTGHRA-VVSACDWLAGGQQM 287 (481)
T ss_pred HhhcCcCCCCCCCCCCCch-hhhhccccccc-ccccccccC-Ccee-------eeeeeeeecccc-ceEehhhhcCccee
Confidence 3211111000 001000 000000 0110 000000000 1122 235567788666 88888899999999
Q ss_pred EEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccc
Q 001178 604 LAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRAST 683 (1131)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1131)
++++.|.+..+||+++++.+..+.+|.+ ..+.++-+|..+++++.+.|.+.++||+.....
T Consensus 288 vTaSWDRTAnlwDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~----------------- 348 (481)
T KOG0300|consen 288 VTASWDRTANLWDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ----------------- 348 (481)
T ss_pred eeeeccccceeeeeccCceeccccCcch--hccccccCCcceEEEEeccCceeEeccchhhcc-----------------
Confidence 9999999999999999999999988776 789999999999999999999999999753210
Q ss_pred cccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCC
Q 001178 684 EMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPES 763 (1131)
Q Consensus 684 ~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~ 763 (1131)
T Consensus 349 -------------------------------------------------------------------------------- 348 (481)
T KOG0300|consen 349 -------------------------------------------------------------------------------- 348 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC
Q 001178 764 TDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK 843 (1131)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~ 843 (1131)
+ +.+ ..+|...|+++.|..
T Consensus 349 --------s------------------V~V-----------------------------------FQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 349 --------S------------------VAV-----------------------------------FQGHTDTVTSVVFNT 367 (481)
T ss_pred --------e------------------eee-----------------------------------ecccccceeEEEEec
Confidence 0 000 115778888888887
Q ss_pred CCCEEEEEe-CCeEEEEECCCce-eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeE----Eeecccc
Q 001178 844 NDSYVMSAG-GGKVSLFNMMNFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK----TKLKGHQ 917 (1131)
Q Consensus 844 dg~~la~~~-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~----~~~~~h~ 917 (1131)
|.+ +++|+ |.+|+|||+.+.. .+.++. ...++..++.+. ++.+||.--++..|++||+...++- ..-++|.
T Consensus 368 dd~-vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHr 444 (481)
T KOG0300|consen 368 DDR-VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHR 444 (481)
T ss_pred CCc-eeecCCCceEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccc
Confidence 765 44555 7889999988754 455555 357789999998 8889999999999999999755432 2346899
Q ss_pred cCeeEEEEccCC--CEEEEEeCCCcEEEEEcCC
Q 001178 918 KHITGLAFSTNL--NILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 918 ~~V~~l~~s~dg--~~l~s~~~Dg~v~lwd~~~ 948 (1131)
.-|+|++|..+. .-|+++|.|..+.-|.+..
T Consensus 445 RMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 445 RMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred eeeeeeeccccCcccccccccccceeeeeEecc
Confidence 999999998764 3488999999999999876
No 122
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.5e-23 Score=201.23 Aligned_cols=298 Identities=13% Similarity=0.177 Sum_probs=222.4
Q ss_pred CcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEE
Q 001178 335 DLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR 414 (1131)
Q Consensus 335 ~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 414 (1131)
+.|.++.+++++.. -.|+.||+.|. +||+|+.||.|.|||+.|...-+ ++.+|..+|+|
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhh-------------------hhhccccceeE
Confidence 45666777888776 89999999997 69999999999999999876443 68899999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec
Q 001178 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE 494 (1131)
Q Consensus 415 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 494 (1131)
++||+||+.|++++.|..|++||+..|.++++. ....+|+.+.|.|..++. ++.+-.+..-.+-+.+...-..+.
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~-~va~~~~~sp~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNK-CVATIMEESPVVIDFSDPKHSVLP 145 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCe-EEEEEecCCcEEEEecCCceeecc
Confidence 999999999999999999999999999876533 246789999999977763 344333334444442221111111
Q ss_pred C-CccCeEEE--eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC-ceEEEEEEccCCCEEEEEeecCCCCceEE
Q 001178 495 G-HEAPVYSV--CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG-LWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1131)
Q Consensus 495 ~-h~~~v~~~--~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 570 (1131)
. ..+..... +-..+..|+++++|...|.+.++|.++.+....+.... ..|..+.++..|++++.-+. |..|+
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR 221 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIR 221 (405)
T ss_pred CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceEE
Confidence 1 11111111 11235667999999999999999999998887766555 68999999999999999876 99999
Q ss_pred EEeCCCC-------eee--EEEec-ccCCceEEEEEeCCCCEEEEEEc-CCcEEEEEcCCCeEEEEEeccCCCCCcceEE
Q 001178 571 EWNESEG-------ALK--RTYIG-FRKKSAGVVQFDTTRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1131)
Q Consensus 571 iwd~~~~-------~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1131)
.|+++.- ++. +++.. .......+++|+.+|.++++++. -..++||....|.+++.+.+..+. ....+.
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~ 300 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVN 300 (405)
T ss_pred EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeecc
Confidence 9997631 111 11110 01124567899999999888764 467999999999999998776543 578899
Q ss_pred EcCCCCEEEEEECCCcEEEEecCCC
Q 001178 640 FNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 640 ~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
|+|-...+++- ..|.+++|.....
T Consensus 301 whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 301 WHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccceeeeeec-cCCceEEEEeecc
Confidence 99988777766 7899999987543
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.1e-24 Score=199.85 Aligned_cols=253 Identities=19% Similarity=0.294 Sum_probs=204.5
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC--CCC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~ 422 (1131)
.|.+-|..+...--|++ |||++.|++|+|+.+..+.... ....+.||.++|..++|.. -|.
T Consensus 9 ~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCc
Confidence 38889999988888985 9999999999999998766422 1236889999999999987 899
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCce--eEEecCCcc
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRK--LFQFEGHEA 498 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~--~~~~~~h~~ 498 (1131)
+||+++.||.|+||.-++|. ..+..+...|...|++++|.|.+..+.|++++.||.|.|.+ .+|.- ......|.-
T Consensus 72 iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred EeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 99999999999999999884 55666788999999999999998888999999999999998 33222 233558999
Q ss_pred CeEEEeecccCC------------ccEEEEEecCCeEEEEeCCCCceeE--EecCCCceEEEEEEccCC----CEEEEEe
Q 001178 499 PVYSVCPHQKEN------------IHFIFSTAVDGKIKAWLYDNVGSRV--DYDAPGLWCTTMLYSADG----SRLFSCG 560 (1131)
Q Consensus 499 ~v~~~~~~~~~~------------~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~g----~~l~~~~ 560 (1131)
.|++++|.|..- -+.|++|+.|+.|++|+.++..-.. .+..|...|+.++|.|.- .++++++
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 999999987522 1569999999999999998763322 478899999999999964 5688887
Q ss_pred ecCCCCceEEEEeCCC--CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 561 TSKEGDSHLVEWNESE--GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 561 ~~~~~~~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
. |+++.||.... +....++.......+..+.|+..|+.|++++.|+.+.+|.-..
T Consensus 231 q----Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 231 Q----DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred C----CCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 6 99999997652 1222222222233788999999999999999999999997543
No 124
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.4e-23 Score=215.51 Aligned_cols=264 Identities=16% Similarity=0.248 Sum_probs=211.1
Q ss_pred eeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 340 ~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
....+.|.++|+.+.+-|....++|+++..+.|.|||..+-.-.... .+...+...+.||...=..++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeeccccccccccc
Confidence 44456799999999999999989999999999999998754332210 001123336889999888899999
Q ss_pred CCC-EEEEEeCCCeEEEEEecCCCc----cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-C--CCceeE
Q 001178 420 DGN-FIGVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L--SGRKLF 491 (1131)
Q Consensus 420 dg~-~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~--~~~~~~ 491 (1131)
... +|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.||| . +.++..
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 644 889999999999999976443 5556678999999999999998777 799999999999999 5 455667
Q ss_pred EecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce-eEEecCCCceEEEEEEccCCCE-EEEEeecCCCCceE
Q 001178 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSADGSR-LFSCGTSKEGDSHL 569 (1131)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~~i 569 (1131)
...+|.++|.|++|+|.. +.+|++||.|++|.+||+++... ...+..|...|..+.|+|.... |++.+. |+.+
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl 341 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRL 341 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcE
Confidence 778999999999999865 58999999999999999998765 4488899999999999997655 555554 9999
Q ss_pred EEEeCCCC--------------eeeEEEecccCCceEEEEEeCCCCE-EEEEEcCCcEEEEEcCC
Q 001178 570 VEWNESEG--------------ALKRTYIGFRKKSAGVVQFDTTRNR-ILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 570 ~iwd~~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~ 619 (1131)
.+||+..- +++..-.||.. .|..+.|+|...+ ++++++|+.+.||.+..
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99998531 12334445544 7888999999875 55688999999999863
No 125
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.6e-22 Score=229.51 Aligned_cols=227 Identities=15% Similarity=0.222 Sum_probs=180.4
Q ss_pred EeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC-CCceEEEEEcCCCcEEEEe-CCCc--------eeEEecCC
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP-NKQLCIVTCGDDKLIRVWD-LSGR--------KLFQFEGH 496 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d-~~~~~l~s~s~d~~i~iwd-~~~~--------~~~~~~~h 496 (1131)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|+||+.|++|+||| .++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5678899999986643 34468899999999999997 56 899999999999999 4332 34567899
Q ss_pred ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
...|.+++|+|... .++++++.|++|++||++++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999987542 456799999999999999888766665 4567999999999999998876 88999999999
Q ss_pred CeeeEEEecccCCc----eEEEEEeCCCCEEEEEEcCC----cEEEEEcCC-CeEEEEEeccCCCCCcceEEEcCCCCEE
Q 001178 577 GALKRTYIGFRKKS----AGVVQFDTTRNRILAAGEDN----QIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLL 647 (1131)
Q Consensus 577 ~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~i~~v~~sp~~~~l 647 (1131)
++.+..+.+|.+.. +....|+++++++++++.|+ .|++||++. ++++.....+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999887632 12234568889999988774 799999985 5666666555543333344445568899
Q ss_pred EEEECCCcEEEEecCCC
Q 001178 648 VVTTADQGIKILANADG 664 (1131)
Q Consensus 648 ~~~~~dg~i~iw~~~~~ 664 (1131)
++|+.|+.|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999765
No 126
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.1e-22 Score=195.24 Aligned_cols=243 Identities=16% Similarity=0.107 Sum_probs=189.5
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeC
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL 485 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 485 (1131)
......|++|.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.+ +++|+-||.|+.+|.
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDL 82 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEe
Confidence 3557889999999999999999999999999998864332 235899999999998765 899999999999997
Q ss_pred CCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCC
Q 001178 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
.......+-.|..+|.|+...+.. ..+++|+.|++|++||.+.......+.... .|.++..+ |+.|++++.
T Consensus 83 n~~~~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~--g~~LvVg~~---- 153 (323)
T KOG1036|consen 83 NTGNEDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVS--GNRLVVGTS---- 153 (323)
T ss_pred cCCcceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEecc--CCEEEEeec----
Confidence 666677777899999999987544 589999999999999998744444444333 67666554 667887765
Q ss_pred CceEEEEeCCCCeeeE-EEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC----eEEEEEeccCC-------CC
Q 001178 566 DSHLVEWNESEGALKR-TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV----NMLTSTEAEGG-------LP 633 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 633 (1131)
+..+.+||+++..... .....-.-.+.++++-|++.-+++++-||.|.+=.++.. +....++.|.. .-
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 8899999998754432 112222236889999998888999999999988666554 33333433321 12
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 634 SLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 634 ~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|++++|+|-...+++|+.||.|.+||..+.
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcch
Confidence 6899999999899999999999999998776
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.8e-19 Score=200.37 Aligned_cols=247 Identities=14% Similarity=0.198 Sum_probs=209.4
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD- 484 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd- 484 (1131)
..|...-+.++|.|+|.+|.+++.||.|++|+..+..... ..+.-|...|.+++.. +. +|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P--~ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP--ETIDISGELVSSIACY--SN--HFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC--chhhccCceeEEEeec--cc--ceEEeeccceEEEeeC
Confidence 3788889999999999999999999999999987763211 1233377778877765 44 699999999999999
Q ss_pred CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCC
Q 001178 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKE 564 (1131)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 564 (1131)
-++..-..+...+-++.++++ +.+|.+++.||.|-.|++-+.........+.+|..+|.++.|+|++.+||+.+.
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~--- 158 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC--- 158 (933)
T ss_pred CCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec---
Confidence 555544445555678889988 467789999999999999999999999999999999999999999999999987
Q ss_pred CCceEEEEeCCCCeeeEEEeccc-------CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcce
Q 001178 565 GDSHLVEWNESEGALKRTYIGFR-------KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPR 637 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~ 637 (1131)
+|.|++||++++.+..++.+.. ...+..++|+|++..+++.+.|+.|++|+..+.+....+........+.+
T Consensus 159 -dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 159 -DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred -CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence 9999999999988776665332 22456699999999999999999999999999999988887766666999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 638 LRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 638 v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+.|+|+|.+||+++.+|.|.|||..+.
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEecccc
Confidence 999999999999999999999999863
No 128
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-20 Score=208.69 Aligned_cols=507 Identities=14% Similarity=0.147 Sum_probs=319.1
Q ss_pred EEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC---EEEEEeC
Q 001178 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN---FIGVAFT 429 (1131)
Q Consensus 353 ~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~---~las~~~ 429 (1131)
-.||+|+++++.+ .+..|.||...+|+++. .+.+|..++..+.+.|... ++.+++.
T Consensus 22 avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~~~~~sl 80 (792)
T KOG1963|consen 22 AVFSNDAKFLFLC--TGNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANYLIVCSL 80 (792)
T ss_pred cccccCCcEEEEe--eCCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceEEEEEec
Confidence 4789999965443 36699999999999986 5889999999999998554 6779999
Q ss_pred CCeEEEEEecCCCccceeeeeecCcCCeeEEEEec----CCCceEEEEEcCCCcEEE---EeC--CC----------cee
Q 001178 430 KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY----PNKQLCIVTCGDDKLIRV---WDL--SG----------RKL 490 (1131)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~----d~~~~~l~s~s~d~~i~i---wd~--~~----------~~~ 490 (1131)
||+|++||...+..++ ++.. ..++.++.+.| ... .+..+..|..+.. -+. ++ ...
T Consensus 81 ~G~I~vwd~~~~~Llk---t~~~-~~~v~~~~~~~~~a~~s~--~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~ 154 (792)
T KOG1963|consen 81 DGTIRVWDWSDGELLK---TFDN-NLPVHALVYKPAQADISA--NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKG 154 (792)
T ss_pred CccEEEecCCCcEEEE---EEec-CCceeEEEechhHhCccc--eeEeecccceeeeecccccccceeeeEeeeccccch
Confidence 9999999999987654 2222 22344433322 111 1112222211111 010 00 111
Q ss_pred EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE----EecCCCceEEEEEEccCCCEEEEEeecCCCC
Q 001178 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV----DYDAPGLWCTTMLYSADGSRLFSCGTSKEGD 566 (1131)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 566 (1131)
..+.+|.. -.++.+++.. .+.....+..+.+|+........ .-..|...+++.+++|++++++++.. +
T Consensus 155 d~~~~~~~-~~~I~~~~~g---e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~----d 226 (792)
T KOG1963|consen 155 DFLKEHQE-PKSIVDNNSG---EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDS----D 226 (792)
T ss_pred hhhhhhcC-CccEEEcCCc---eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEecc----C
Confidence 11122322 2344443333 33444456678888877654211 11224445899999999999999965 8
Q ss_pred ceEEEEeCCC----CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 567 SHLVEWNESE----GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 567 ~~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
|+|.+|.--. ......+.-|++ .|.+++|+++|.+|++|+..|.+.+|.+.+++ .+.++.-+. +|..+.++|
T Consensus 227 GrI~vw~d~~~~~~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs--~I~~i~vS~ 302 (792)
T KOG1963|consen 227 GRILVWRDFGSSDDSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGS--PILHIVVSP 302 (792)
T ss_pred CcEEEEeccccccccccceEEEeccc-ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCC--eeEEEEEcC
Confidence 9999996432 123345555555 89999999999999999999999999999988 333333333 799999999
Q ss_pred CCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCC
Q 001178 643 EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGAD 722 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~ 722 (1131)
|+.+.++...|+.|.+....+. .....+.+-... .|+
T Consensus 303 ds~~~sl~~~DNqI~li~~~dl-~~k~tIsgi~~~-------------------~~~----------------------- 339 (792)
T KOG1963|consen 303 DSDLYSLVLEDNQIHLIKASDL-EIKSTISGIKPP-------------------TPS----------------------- 339 (792)
T ss_pred CCCeEEEEecCceEEEEeccch-hhhhhccCccCC-------------------Ccc-----------------------
Confidence 9999999999999999987665 333333321110 000
Q ss_pred ccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCC
Q 001178 723 SAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQN 802 (1131)
Q Consensus 723 ~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 802 (1131)
. .....+-.+.++++|.-..++..+..|.+++||+......
T Consensus 340 ----------------~-----------------------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 340 ----------------T-----------------------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred ----------------c-----------------------cccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 0 0112233456777776667777888899999988664332
Q ss_pred CCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe---------CCe--EEEEECCCc----eeE
Q 001178 803 PSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG---------GGK--VSLFNMMNF----KVM 867 (1131)
Q Consensus 803 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~---------dg~--i~vwd~~~~----~~~ 867 (1131)
. ...+...+...|.. .+.-.++.++.+..|.++++.. ||. +++|-.... .+.
T Consensus 381 ~------~~~v~~~n~~~~~~-------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~ 447 (792)
T KOG1963|consen 381 Y------KLQVCDENYSDGDV-------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILN 447 (792)
T ss_pred e------eEEEEeecccCCcc-------eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEE
Confidence 1 11112222222221 2355678888888999999873 333 888965543 333
Q ss_pred EEEe-CCCCCeeEEEEeCCCCc-EEEEEeCCCcEEEEEeecc----------eeEEeecccccCeeEEEEccCCCEEEEE
Q 001178 868 TTFM-SPPPASTFLAFHPQDNN-IIAIGMEDSTIQIYNVRVD----------EVKTKLKGHQKHITGLAFSTNLNILVSS 935 (1131)
Q Consensus 868 ~~~~-~~~~~i~~l~~s~~~~~-~la~g~~dg~I~iwd~~~~----------~~~~~~~~h~~~V~~l~~s~dg~~l~s~ 935 (1131)
..+. .|...+...++.+.-.. .+++++.||.++||-+... .|...-.-|..++++++|+.||..|+ +
T Consensus 448 T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~ 526 (792)
T KOG1963|consen 448 TKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-V 526 (792)
T ss_pred EEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-E
Confidence 3332 56666666665542333 8899999999999988432 23333334889999999999996555 5
Q ss_pred eCCCcEEEEEcCCC-ceeeeeeeecCCCCCCCCceEEEEc---CCCcEEEEEeCCeEEEEeCCCcccce
Q 001178 936 GSDAQLIFWNTDTW-EKRKSIAIQLPAGKLPVGETRVQFH---SDQVRLLVNHETQLAIYDGSKMECIR 1000 (1131)
Q Consensus 936 ~~Dg~v~lwd~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s---~d~~~l~~~~d~~i~vwd~~~~~~~~ 1000 (1131)
+.|++|.+||..+. +... ..+....++..+.|. +....+...+..++.+|++-+...+.
T Consensus 527 s~~~~Itiwd~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 527 SFDDTITIWDYDTKNELLC------TEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ecCCEEEEecCCChhhhhc------cccccccchHhHhhhcccccccceeeccCceEehHhhhhhheec
Confidence 66779999999883 2111 111111222233332 22223444678889999998777665
No 129
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=9.7e-23 Score=218.89 Aligned_cols=275 Identities=16% Similarity=0.250 Sum_probs=217.6
Q ss_pred CCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeE-EEec
Q 001178 764 TDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPC-VALS 842 (1131)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~-l~~s 842 (1131)
.+|...|..+++.+.. .++.++.||++++|+-.. +..+......++.+.|.. +++.
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~----------------------~~~l~~~~~~~~~g~i~~~i~y~ 67 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKG----------------------KQYLETHAFEGPKGFIANSICYA 67 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccC----------------------cccccceecccCcceeeccceec
Confidence 4588888888866554 688899999998886322 222221122245555555 7776
Q ss_pred C-CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCe
Q 001178 843 K-NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI 920 (1131)
Q Consensus 843 ~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V 920 (1131)
+ ++-.+++|+ |++|.+|...+..++.++.+|...|.++.... ++. +++|++|.++++|.. +++...+++|...|
T Consensus 68 e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asV 143 (745)
T KOG0301|consen 68 ESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASV 143 (745)
T ss_pred cccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchhe
Confidence 4 444577777 99999999999999999999999999999877 565 889999999999975 56677799999999
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccce
Q 001178 921 TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIR 1000 (1131)
Q Consensus 921 ~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~ 1000 (1131)
+++++-|++ .++|||.|++|++|.-.+ ..+...+| ...|+.+++-+++.+|.++.||.|+.|++ +|+++.
T Consensus 144 WAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gH-tD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~ 213 (745)
T KOG0301|consen 144 WAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGH-TDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLL 213 (745)
T ss_pred eeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccc-hhheeeeEEecCCCeEeecCCceEEEEec-cCceee
Confidence 999999987 899999999999998654 34445553 48999999999999999999999999999 788888
Q ss_pred eeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEE
Q 001178 1001 QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLA 1080 (1131)
Q Consensus 1001 ~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~ 1080 (1131)
.+.+| ..-|+++....++..++++++|+++++|+.. ++...+..+ +..++. +.+.++ .-++
T Consensus 214 ~~~gh---tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP----------ttsiWs--a~~L~N--gDIv 274 (745)
T KOG0301|consen 214 EMHGH---TNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP----------TTSIWS--AKVLLN--GDIV 274 (745)
T ss_pred eeecc---ceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC----------ccceEE--EEEeeC--CCEE
Confidence 88777 8899999999999999999999999999976 555444422 223443 333342 3588
Q ss_pred EEecCCcEEEEecC
Q 001178 1081 VGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1081 s~~~Dg~v~iW~~~ 1094 (1131)
+|+.||.||||...
T Consensus 275 vg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 275 VGGSDGRVRVFTVD 288 (745)
T ss_pred EeccCceEEEEEec
Confidence 99999999999976
No 130
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=7.5e-22 Score=209.65 Aligned_cols=273 Identities=13% Similarity=0.151 Sum_probs=204.7
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 428 (1131)
.|..++|-|||..+++.+ +..+.|||.+.|..+. ++++|.+.|.|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence 899999999998766554 4589999999999876 5889999999999999999999999
Q ss_pred CCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEeeccc
Q 001178 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQK 508 (1131)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~ 508 (1131)
.|+.|.+|+-+-...++ ..|...|.|+.|+|-.. .++||+-. ..-+|....+.+.+.+ ...++.+.+| .
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K~k-ss~R~~~CsW--t 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSKHK-SSSRIICCSW--T 141 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHhhh-hheeEEEeee--c
Confidence 99999999976543332 46999999999999988 68888753 4668885444443332 2345666666 6
Q ss_pred CCccEEEEEecCCeEEEEeCCCCceeEEecC---CCceEEEEEEccCCC-----EEEEEeecCCCCceEEEEeCCCCeee
Q 001178 509 ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA---PGLWCTTMLYSADGS-----RLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 509 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~g~-----~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
.||++++.|-.+|+|.+-+- +++....+.. ...+|.+++|+|... .+++... ..++..+.+. |+.+
T Consensus 142 nDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~I 215 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQI 215 (1081)
T ss_pred CCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-ceee
Confidence 78899999999999998754 3344443333 556899999999642 3444432 3445555443 4433
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
..-.. -+....|+.+.++|.+++.|+.|+.+.+|.. .|-.+.++....+ .|..++..|+++.++.|+.||+|.-|+
T Consensus 216 gk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 216 GKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred ccccc-CCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccce--eEEEEEEccCCceEEEEEccCeeehhh
Confidence 32221 1124567888999999999999999999975 4556666544333 799999999999999999999999998
Q ss_pred cCC
Q 001178 661 NAD 663 (1131)
Q Consensus 661 ~~~ 663 (1131)
+..
T Consensus 292 l~f 294 (1081)
T KOG1538|consen 292 LIF 294 (1081)
T ss_pred hHH
Confidence 743
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=8.4e-23 Score=210.17 Aligned_cols=281 Identities=15% Similarity=0.208 Sum_probs=226.4
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCC-CCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQN-PSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN 844 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d 844 (1131)
|..-|.++.+|...+.+++++. |.|++||+...... |.... | .. .....|+++.+.||
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqL---------d----------cl-~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQL---------D----------CL-NRDNYIRSCKLLPD 476 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccc---------c----------cc-CcccceeeeEecCC
Confidence 7778888999988888877664 68999998764211 11110 0 00 35778999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCceeEE--EEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCee
Q 001178 845 DSYVMSAG-GGKVSLFNMMNFKVMT--TFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT 921 (1131)
Q Consensus 845 g~~la~~~-dg~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~ 921 (1131)
|+.|++|+ -.++.|||+..-.... .+........+++.+| |.++.+++..||.|.|||+.+...+..|+||.+.+.
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 99999999 5789999998654433 3333345678899999 899999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccce
Q 001178 922 GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIR 1000 (1131)
Q Consensus 922 ~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~ 1000 (1131)
||..++||..|-|||-|.+|+-||+..+... ..+.+.+.|.++..+|.+.+|++|- ++.+.|......+..
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrql-------qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky- 627 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQL-------QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY- 627 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhh-------hhhhhhhhheecccCCCccceeeecccCcEEEEecCCccce-
Confidence 9999999999999999999999999986542 3334447899999999999999985 677888776644433
Q ss_pred eeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEE
Q 001178 1001 QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLA 1080 (1131)
Q Consensus 1001 ~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~ 1080 (1131)
.+..| .+.|.++.|++.|+++++.+.|+.+..|...-|..+.+... .++|.+.+|.+ +..+++
T Consensus 628 qlhlh---eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-----------~SsVlsCDIS~---ddkyIV 690 (705)
T KOG0639|consen 628 QLHLH---ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-----------SSSVLSCDISF---DDKYIV 690 (705)
T ss_pred eeccc---ccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-----------cCcceeeeecc---CceEEE
Confidence 33333 78999999999999999999999999999999988877663 44566556654 668999
Q ss_pred EEecCCcEEEEec
Q 001178 1081 VGLTDGSVKVIEP 1093 (1131)
Q Consensus 1081 s~~~Dg~v~iW~~ 1093 (1131)
||+.|..--+|.+
T Consensus 691 TGSGdkkATVYeV 703 (705)
T KOG0639|consen 691 TGSGDKKATVYEV 703 (705)
T ss_pred ecCCCcceEEEEE
Confidence 9999998888875
No 132
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5e-22 Score=203.45 Aligned_cols=290 Identities=16% Similarity=0.251 Sum_probs=228.2
Q ss_pred CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC--eEEEEEeccCCCCCcceEEEcCCCC-EEEEEECCCcEEEEecCCCc
Q 001178 589 KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTEAEGGLPSLPRLRFNKEGN-LLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 589 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~i~~v~~sp~~~-~l~~~~~dg~i~iw~~~~~~ 665 (1131)
+.|+++.|+|....+++++.||+++||.+... ..++.+..... +|.++.|.|+|. .+++++....++.||+.+.+
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~f--Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKF--PIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccC--ccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 37999999999999999999999999988654 35555554443 899999999999 88999999999999986651
Q ss_pred hhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCccee
Q 001178 666 RALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWE 745 (1131)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~ 745 (1131)
..+ ++|-
T Consensus 292 -~~k--------------------------~~~~---------------------------------------------- 298 (514)
T KOG2055|consen 292 -VTK--------------------------LKPP---------------------------------------------- 298 (514)
T ss_pred -ccc--------------------------ccCC----------------------------------------------
Confidence 000 0000
Q ss_pred eecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccc
Q 001178 746 LTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMT 825 (1131)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 825 (1131)
T Consensus 299 -------------------------------------------------------------------------------- 298 (514)
T KOG2055|consen 299 -------------------------------------------------------------------------------- 298 (514)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEe
Q 001178 826 NDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV 904 (1131)
Q Consensus 826 ~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~ 904 (1131)
.+.....+....+|+++++|+..+ .|.|.+....+++.+.+++. .+.|..++|+. +++.|.+.+.+|.|++||+
T Consensus 299 ---~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 299 ---YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSS-DSKELLASGGTGEVYVWNL 373 (514)
T ss_pred ---CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEec-CCcEEEEEcCCceEEEEec
Confidence 000123445677889999999888 79999999999999988874 57799999998 7888888889999999999
Q ss_pred ecceeEEeeccccc-CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee-eeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 905 RVDEVKTKLKGHQK-HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS-IAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 905 ~~~~~~~~~~~h~~-~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~-~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
....++..+....+ .-++++.|++|.+||+|+..|.|-|||.++...... .++... ......|++++|++|++.||.
T Consensus 374 ~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~-dNLtt~Itsl~Fn~d~qiLAi 452 (514)
T KOG2055|consen 374 RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV-DNLTTAITSLQFNHDAQILAI 452 (514)
T ss_pred CCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh-hhhheeeeeeeeCcchhhhhh
Confidence 99998888864322 236688889999999999999999999776221111 111111 112268999999999999997
Q ss_pred Ee---CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 983 NH---ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 983 ~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
++ ...+++-.+.+......|......-+.|+|++|||.|.+||.|.++|.+.+|.+.
T Consensus 453 aS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 453 ASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 54 6789999999999888888775556789999999999999999999999999863
No 133
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.5e-22 Score=205.38 Aligned_cols=223 Identities=16% Similarity=0.195 Sum_probs=191.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeC---
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL--- 485 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~--- 485 (1131)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 4679999999999999999999999999999998775 5689999999999999999 8999999999999972
Q ss_pred -------CCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEE
Q 001178 486 -------SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFS 558 (1131)
Q Consensus 486 -------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 558 (1131)
+-++++.|..|.-+|+.+.+.+.+-..+++|+|.|.++++||+..+..+..+... ..+.+++.+|.++.++.
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEe
Confidence 2356788999999999999887766689999999999999999988777766544 46999999999999999
Q ss_pred EeecCCCCceEEEEeCCC----------------CeeeEEEecccC-CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 559 CGTSKEGDSHLVEWNESE----------------GALKRTYIGFRK-KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 559 ~~~~~~~~~~i~iwd~~~----------------~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
|+. +|.|.+.++.. +..+..+.+|.+ ..|+|++++.||..|++|+.||.++|||+.+.+
T Consensus 235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 986 88888877532 223456777766 589999999999999999999999999999999
Q ss_pred EEEEEeccCCCCCcceEEEcCC
Q 001178 622 MLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
+++++... .++|+.+.+.|-
T Consensus 311 ~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 311 CIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHhhh--ccccceeEeecc
Confidence 88887632 237888888664
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.2e-21 Score=188.69 Aligned_cols=300 Identities=17% Similarity=0.240 Sum_probs=225.7
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~ 423 (1131)
.|.+.|+++.+.|...+++++|+.||.|.|||++.........+ + -...|....+ --.+|.-.|..+-|-| |.-.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i-~k~~c~v~~~--h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-I-AKHKCIVAKQ--HENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-e-eheeeecccc--CCccceeeeeeeEEeeecCce
Confidence 39999999999996545699999999999999986542221000 0 0011111111 2458999999999999 6668
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCC-ceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK-QLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~-~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~ 501 (1131)
+.+++.|.+++|||..+-+... .+. -.+.|.+-++||-.. ..++++|..|-.|++.| .+|..-+.+.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 8899999999999998854332 332 456688888988543 33788888999999999 99999999999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCC-ceeEE--------------ecCCCceEEEEEEccCCCEEEEEeecCCCC
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNV-GSRVD--------------YDAPGLWCTTMLYSADGSRLFSCGTSKEGD 566 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~--------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 566 (1131)
++.|+|..+ -.|++|+.||.|++||++.. .+... ...|.+.+..++|+.+|.++++++. +
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d 267 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----D 267 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----c
Confidence 999998665 68899999999999999864 22222 2345567999999999999999987 8
Q ss_pred ceEEEEeCCCCeeeEEEec---ccC---CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEE
Q 001178 567 SHLVEWNESEGALKRTYIG---FRK---KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1131)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~---~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1131)
..+++|+...|+....-.+ +.. ..+. +. +.+...++.--.++.+.++++-.++.+..+..|.. .|.+.++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k--~i~c~~~ 343 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK--RINCAAY 343 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccc--eeeEEee
Confidence 8999999988764221111 011 0111 22 23334455555679999999999999999988844 7999999
Q ss_pred cCCCCEEEEEECCCcEEEEec
Q 001178 641 NKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 641 sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
-|+-+...+|..|+.+..|-.
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999975
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.1e-22 Score=202.80 Aligned_cols=287 Identities=13% Similarity=0.203 Sum_probs=231.2
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC-EEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-FIG 425 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~-~la 425 (1131)
.+.|++|.|+|.-. +|.+++.||+++||.++........ .+.-...+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lq-----------------S~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQ-----------------SIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhe-----------------eeeeccCccceeeecCCCceEEE
Confidence 46999999999987 7999999999999999754332211 1222356899999999999 899
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCc-CCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
+++.......||+.+++.. +...+.++. ..+.....+++++ +|+..|..|.|.+.. .++..+..++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 9999999999999997743 334455655 4678889999999 899999999999999 8888887776 56789999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCc-eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC------
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE------ 576 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~------ 576 (1131)
+|+ .+++.|++++.+|.|.+||++.......+...+. .-++++.+++|.+||+|+. .|.|.|||..+
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 996 6678999999999999999999988877766544 4578888999999999986 89999999643
Q ss_pred CeeeEEEecccCCceEEEEEeCCCCEEEEEE--cCCcEEEEEcCCCeEEEEEecc-CCCCCcceEEEcCCCCEEEEEECC
Q 001178 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAE-GGLPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
.+++..+..-.. .|+.+.|+++.+.|+.++ .+..+++-.+.+.....-++.. .....++|++|+|.+.++|+|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 445555554333 788999999999988877 4678999998877665554433 334468999999999999999999
Q ss_pred CcEEEEecC
Q 001178 654 QGIKILANA 662 (1131)
Q Consensus 654 g~i~iw~~~ 662 (1131)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999864
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.5e-21 Score=200.66 Aligned_cols=293 Identities=15% Similarity=0.226 Sum_probs=219.6
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEE-EEeccCCCCCcceEEEcCC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLT-STEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~-~~~~~~~~~~i~~v~~sp~ 643 (1131)
...+.+||+++|.....|++.....-.++..- .+.+++++. ....|.+|.+....... .+..++ ++.+++-+|+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg---~v~al~s~n~ 92 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPG---PVHALASSNL 92 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhccccc---ceeeeecCCC
Confidence 55699999999999999887522122222211 235666655 44578999987665444 222222 6899999999
Q ss_pred CCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCc
Q 001178 644 GNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADS 723 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~ 723 (1131)
|.+|+.|+..|.|++|.+.+| ..+..+.
T Consensus 93 G~~l~ag~i~g~lYlWelssG-~LL~v~~--------------------------------------------------- 120 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSG-ILLNVLS--------------------------------------------------- 120 (476)
T ss_pred ceEEEeecccCcEEEEEeccc-cHHHHHH---------------------------------------------------
Confidence 999999989999999999998 4444332
Q ss_pred cccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCC
Q 001178 724 AARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNP 803 (1131)
Q Consensus 724 ~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 803 (1131)
.|...|+++.|+.||..+++++.||.|.+|.+..-....
T Consensus 121 -----------------------------------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 121 -----------------------------------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred -----------------------------------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 278899999999999999999999999999876421111
Q ss_pred CCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC--CEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEE
Q 001178 804 SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND--SYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFL 880 (1131)
Q Consensus 804 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg--~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l 880 (1131)
.. ...........|.-+|+++...+.| .+|++++ |.++++||+..+.++.++.- ...+.++
T Consensus 160 ~~---------------~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av 223 (476)
T KOG0646|consen 160 ND---------------HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAV 223 (476)
T ss_pred cC---------------CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeE
Confidence 10 0111111122688999999887664 4777877 99999999999999888764 5679999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEEeec----------------ceeEEeeccccc--CeeEEEEccCCCEEEEEeCCCcEE
Q 001178 881 AFHPQDNNIIAIGMEDSTIQIYNVRV----------------DEVKTKLKGHQK--HITGLAFSTNLNILVSSGSDAQLI 942 (1131)
Q Consensus 881 ~~s~~~~~~la~g~~dg~I~iwd~~~----------------~~~~~~~~~h~~--~V~~l~~s~dg~~l~s~~~Dg~v~ 942 (1131)
+.+| ..+.+.+|+.+|.|.+.++.. +..+..+.||.+ +|+|++.+-||..|++|+.||.|+
T Consensus 224 ~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 224 ALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred EEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence 9999 899999999999999987643 234566889999 999999999999999999999999
Q ss_pred EEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCc
Q 001178 943 FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 943 lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 978 (1131)
+||+.+.++...... ..++|+.+.+.|-.+
T Consensus 303 vWdi~S~Q~iRtl~~------~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 303 VWDIYSKQCIRTLQT------SKGPVTNLQINPLER 332 (476)
T ss_pred EEecchHHHHHHHhh------hccccceeEeecccc
Confidence 999999776544431 126788888765433
No 137
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.4e-21 Score=200.19 Aligned_cols=293 Identities=18% Similarity=0.253 Sum_probs=224.9
Q ss_pred CCCcEEEEEEecCCC-cEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCE
Q 001178 346 QGSSVVSMDFHPFHH-TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1131)
Q Consensus 346 h~~~V~~~~fspdg~-~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~ 423 (1131)
+..+|++++|+|... .++|+|..-|.|=+||+.+.+....+. ..+..|..+|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence 788999999999865 689999999999999997555443321 14789999999999999 4568
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~ 501 (1131)
+.+.+.||+|+.-|++++. ......+......+.++.|+.+.. .++.+..=|...+|| ..+.....+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchh-hHHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 8889999999999998854 233333443556788999999888 577777777999999 56666778888999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCcee----EEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC--
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR----VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-- 575 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-- 575 (1131)
+++++|... .+++|++.|++.+|||++..... .....|...|.+..|||.+-.|++.+. |..|+|||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999998655 79999999999999999875433 345568889999999999888998876 9999999973
Q ss_pred --CCeeeEEEecccC--C--ceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcce-EEEcCCCC-EE
Q 001178 576 --EGALKRTYIGFRK--K--SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPR-LRFNKEGN-LL 647 (1131)
Q Consensus 576 --~~~~~~~~~~~~~--~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~-v~~sp~~~-~l 647 (1131)
...+...+...+. . ...-..|.|+..++++|..-..|-|+|-..++.+..+...... .|.+ ..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 2233333331111 1 1223679999999999999999999999999877776544322 3443 57999777 55
Q ss_pred EEEECCCcEEEEecC
Q 001178 648 VVTTADQGIKILANA 662 (1131)
Q Consensus 648 ~~~~~dg~i~iw~~~ 662 (1131)
+.++..|.|+||...
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 555667888888643
No 138
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=2.7e-21 Score=186.30 Aligned_cols=247 Identities=16% Similarity=0.235 Sum_probs=186.2
Q ss_pred CCCccceEEEEeecCCceEEE-eeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEec
Q 001178 764 TDSASKVARLLYTNSGIGILA-LWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS 842 (1131)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s 842 (1131)
.+|...|..+.|-|-..-+++ ++-|.++++||.++...... + ...+.|.+-++|
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~-----------F--------------~me~~VYshamS 152 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD-----------F--------------KMEGKVYSHAMS 152 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEE-----------e--------------ecCceeehhhcC
Confidence 458888999998886555554 45599999999766321110 1 134556666666
Q ss_pred CCCC---EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc-eeEEe-----
Q 001178 843 KNDS---YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-EVKTK----- 912 (1131)
Q Consensus 843 ~dg~---~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~-~~~~~----- 912 (1131)
|=.. ++|+|. +-.|++.|+.+|.+-.++.+|...|.++.|+|...-.||+|+.||.|++||+... .+...
T Consensus 153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred hhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 6433 566666 5679999999999999999999999999999977778999999999999999753 22222
Q ss_pred ---------ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE
Q 001178 913 ---------LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1131)
Q Consensus 913 ---------~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 983 (1131)
-.+|.+.|.+++|+.|+.++++++.|..+++|+..+|+....................+..-..+.++..-
T Consensus 233 ~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p 312 (397)
T KOG4283|consen 233 TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFP 312 (397)
T ss_pred CccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEe
Confidence 23688999999999999999999999999999999887543332222211111222223322233444455
Q ss_pred eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 001178 984 HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 984 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
.++.+.++.+-++..++.+..| ...|.+.++-|+=+.+.+|+.|+.|..|-.
T Consensus 313 ~~~~lall~~~sgs~ir~l~~h---~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 313 NDGSLALLNLLEGSFVRRLSTH---LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCCeEEEEEccCceEEEeeecc---cceeeEEeecCchhhhhccccCCccccccc
Confidence 6799999999999999999888 789999999999999999999999999976
No 139
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=1.3e-21 Score=201.30 Aligned_cols=253 Identities=16% Similarity=0.260 Sum_probs=202.3
Q ss_pred ccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCCcc-------ceeeeeecCcCCeeEEEEecCCCceEEEEEcC
Q 001178 405 VKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSNDL-------CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD 476 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~~~~-------~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~ 476 (1131)
...|.+.|+.+.+-|. ...+|+.+..+.|.|||....... .....+.||.+.-.+++|++.... .+++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 4478999999999995 557777888999999999654322 223368999998899999998776 7999999
Q ss_pred CCcEEEEeCC--Cc------eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCC--CCceeEEecCCCceEEE
Q 001178 477 DKLIRVWDLS--GR------KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD--NVGSRVDYDAPGLWCTT 546 (1131)
Q Consensus 477 d~~i~iwd~~--~~------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~~~~~~~~~~v~~ 546 (1131)
|++|++||++ +. ....+.+|...|..++|++... ..+.+++.|+.+.|||++ +.+.......|...|.+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999932 22 2456789999999999998655 689999999999999999 45555677889999999
Q ss_pred EEEccCC-CEEEEEeecCCCCceEEEEeCCCC-eeeEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEE
Q 001178 547 MLYSADG-SRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNML 623 (1131)
Q Consensus 547 ~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~ 623 (1131)
++|+|-+ ..||+++. |++|.+||+++- +.+.++.+|.. .|..+.|+|.. ..|++++.|+.+.+||+..-...
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 9999955 55666665 999999999874 46778888776 89999999986 47788899999999998652211
Q ss_pred ------------EEEeccCCCCCcceEEEcCCCCE-EEEEECCCcEEEEecCCC
Q 001178 624 ------------TSTEAEGGLPSLPRLRFNKEGNL-LVVTTADQGIKILANADG 664 (1131)
Q Consensus 624 ------------~~~~~~~~~~~i~~v~~sp~~~~-l~~~~~dg~i~iw~~~~~ 664 (1131)
-.+...+|...|..+.|+|+... +++.+.|+.+.||.....
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 12444467778999999997655 567788999999998643
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=9.7e-20 Score=201.16 Aligned_cols=206 Identities=16% Similarity=0.195 Sum_probs=154.3
Q ss_pred eEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC-cEEEEEeecceeEEee
Q 001178 837 PCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS-TIQIYNVRVDEVKTKL 913 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-~I~iwd~~~~~~~~~~ 913 (1131)
..++++|+++.+++++ ++.|++||+.+.+.+..+.. ...+.+++|+| ++.+++++..++ .+.+||..+++....+
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 3577888888776553 68899999999888777753 23468899999 888888888775 4677898888776554
Q ss_pred cccccCeeEEEEccCCCEEEE-EeCCCcEEEEEcCCCceeeeeeeecCCCC-CCCCceEEEEcCCCcEEEE--EeCCeEE
Q 001178 914 KGHQKHITGLAFSTNLNILVS-SGSDAQLIFWNTDTWEKRKSIAIQLPAGK-LPVGETRVQFHSDQVRLLV--NHETQLA 989 (1131)
Q Consensus 914 ~~h~~~V~~l~~s~dg~~l~s-~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~s~d~~~l~~--~~d~~i~ 989 (1131)
.. ...+.+++|+|+|++|+. +..++.|++||+.+++............. .......++|+|+++++++ +.++.+.
T Consensus 154 ~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 154 LV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred Ec-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 32 234678999999998854 45699999999998765443332211111 1123456889999998655 3567899
Q ss_pred EEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecC
Q 001178 990 IYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 990 vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
+||..+++.+..+.. ...+.+++|+|+|++|++++ .++.|.+||+.+++.+.++..
T Consensus 233 v~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 233 VVDAKTYEVLDYLLV----GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred EEECCCCcEEEEEEe----CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 999998887765432 34789999999999998874 689999999999998888863
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.7e-22 Score=217.78 Aligned_cols=235 Identities=18% Similarity=0.337 Sum_probs=210.3
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+ ..+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i---~S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI---TSLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh---heeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 3468888999988778899999999999999998765433 35899999999999999988 899999999999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
..++.++++.+|...+.++.|+|. +.+.++|+.|..+++||.+..++...+..|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~--~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPY--GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccc--eEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 889999999999999999999765 478899999999999999999999999999999999999999999999985
Q ss_pred CCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
|..+++||...|+....|..|.. .+.++.|+|..-.++.|+.|+++++||+++.+.+...... ...|.+.+|+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD 249 (825)
T ss_pred --cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence 89999999999999999998776 8888999998888999999999999999998888776655 347999999999
Q ss_pred CCEEEEEECC
Q 001178 644 GNLLVVTTAD 653 (1131)
Q Consensus 644 ~~~l~~~~~d 653 (1131)
+..+++|...
T Consensus 250 ~~~~~~G~q~ 259 (825)
T KOG0267|consen 250 GKIVLSGEQI 259 (825)
T ss_pred ceeeecCchh
Confidence 9998887654
No 142
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=4.4e-19 Score=195.92 Aligned_cols=291 Identities=12% Similarity=0.113 Sum_probs=211.9
Q ss_pred EEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEE-EEEecCCeEEEEeCCCCceeEEecCCCceEEEE
Q 001178 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFI-FSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTM 547 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1131)
++++++.|+.+++|| .+++.+..+..+.. +.+++|++ ++..+ ++++.++.|++||..+++....+..+. .+..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSK--DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECC--CCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEE
Confidence 688999999999999 77888888876544 56788864 45555 567789999999998877665554433 35678
Q ss_pred EEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCC-cEEEEEcCCCeEEEEE
Q 001178 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN-QIKFWDMDNVNMLTST 626 (1131)
Q Consensus 548 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 626 (1131)
+++|+++.+++++. .++.+++||+.+++.+..+... ..+..++|+|++.++++++.++ .+.+||..+++.....
T Consensus 79 ~~~~~g~~l~~~~~---~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 79 ALHPNGKILYIANE---DDNLVTVIDIETRKVLAEIPVG--VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred EECCCCCEEEEEcC---CCCeEEEEECCCCeEEeEeeCC--CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99999998876642 2679999999998877777532 2467799999999999888765 4677899888776655
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccccccc
Q 001178 627 EAEGGLPSLPRLRFNKEGNLLVVTT-ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAER 705 (1131)
Q Consensus 627 ~~~~~~~~i~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 705 (1131)
.... ....++|+|+++.+++++ .++.|++||+.++. ....+.
T Consensus 154 ~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~~~~~~--------------------------------- 196 (300)
T TIGR03866 154 LVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-VIKKIT--------------------------------- 196 (300)
T ss_pred EcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-eeeeee---------------------------------
Confidence 4322 457899999999886554 58999999987651 100000
Q ss_pred ccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEe
Q 001178 706 VDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILAL 785 (1131)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 785 (1131)
+...+
T Consensus 197 ---------------------------------------------------------------------~~~~~------ 201 (300)
T TIGR03866 197 ---------------------------------------------------------------------FEIPG------ 201 (300)
T ss_pred ---------------------------------------------------------------------ecccc------
Confidence 00000
Q ss_pred eecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCC
Q 001178 786 WSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMN 863 (1131)
Q Consensus 786 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~ 863 (1131)
.. ........++|+|++++++++. ++.+.+||+.+
T Consensus 202 ------------------------------------------~~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 202 ------------------------------------------VH-PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred ------------------------------------------cc-cccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 00 0011123578899999865543 67899999999
Q ss_pred ceeEEEEeCCCCCeeEEEEeCCCCcEEEEE-eCCCcEEEEEeecceeEEeecccccCeeEEEEcc
Q 001178 864 FKVMTTFMSPPPASTFLAFHPQDNNIIAIG-MEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFST 927 (1131)
Q Consensus 864 ~~~~~~~~~~~~~i~~l~~s~~~~~~la~g-~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 927 (1131)
++.+..+. +...+.+++|+| ++++|+++ ..+|.|.+||+.+++++..++.. ...+.++|+|
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 239 YEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 88876654 345789999999 78777776 56899999999999999988765 4558888875
No 143
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.1e-20 Score=182.09 Aligned_cols=252 Identities=12% Similarity=0.210 Sum_probs=190.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCcee
Q 001178 412 VSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL 490 (1131)
Q Consensus 412 V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~ 490 (1131)
-.|+.||+.|.+||+|..||.|.|||+.+-..- ..+.+|..+|++++||+||+ .|+|+|.|..|.+|| ..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia---r~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA---RMLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh---hhhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 789999999999999999999999999986533 36889999999999999999 899999999999999 899988
Q ss_pred EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCc----eEEEEEEccCCCEEEEEeecCCCC
Q 001178 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL----WCTTMLYSADGSRLFSCGTSKEGD 566 (1131)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~g~~l~~~~~~~~~~ 566 (1131)
+.++ ...+|+...|+|......+++-- +..-.+-++........-..... ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 8886 67899999999987755555443 33344445544222221111111 1233468999999999976 9
Q ss_pred ceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC-------eEE--EEEeccCCCCCcce
Q 001178 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV-------NML--TSTEAEGGLPSLPR 637 (1131)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~i~~ 637 (1131)
|.+.++|..+.+++..++-.....|..+-++..|.+++.-+.|+.|+.|++..- +.. +.++.--+...=.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 999999999999998887655447888999999999999999999999997631 111 11110001112357
Q ss_pred EEEcCCCCEEEEEEC-CCcEEEEecCCCchhhhhhhccc
Q 001178 638 LRFNKEGNLLVVTTA-DQGIKILANADGLRALRAIETRA 675 (1131)
Q Consensus 638 v~~sp~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~ 675 (1131)
++|+.+|.+++.++. ...++||.-..| .+++.+.|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 899999999987764 568999998877 5666655543
No 144
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=2.2e-19 Score=191.19 Aligned_cols=275 Identities=14% Similarity=0.220 Sum_probs=214.5
Q ss_pred eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeE
Q 001178 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM 622 (1131)
Q Consensus 543 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1131)
.|..++|-|||..|+.+. +..+.+||...|..+.++++|.+ .|.+++|+.+|+++++|+.|..+.+|+-.-...
T Consensus 14 ci~d~afkPDGsqL~lAA-----g~rlliyD~ndG~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----GSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-----CCEEEEEeCCCcccccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 688999999999998886 67899999999999999999888 899999999999999999999999998654333
Q ss_pred EEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccc
Q 001178 623 LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSK 702 (1131)
Q Consensus 623 ~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 702 (1131)
++- .|...|.|+.|+|-...+++++-. ..-+|..... .+..
T Consensus 88 LkY----SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK--~V~K-------------------------------- 128 (1081)
T KOG1538|consen 88 LKY----SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK--SVSK-------------------------------- 128 (1081)
T ss_pred eee----ccCCeeeEeecCchHHHhhhcchh-hccccChhhh--hHHh--------------------------------
Confidence 322 344589999999998888887654 3456654322 0000
Q ss_pred cccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceE
Q 001178 703 AERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGI 782 (1131)
Q Consensus 703 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 782 (1131)
.....++.+.+|..||.++
T Consensus 129 -------------------------------------------------------------~kss~R~~~CsWtnDGqyl 147 (1081)
T KOG1538|consen 129 -------------------------------------------------------------HKSSSRIICCSWTNDGQYL 147 (1081)
T ss_pred -------------------------------------------------------------hhhheeEEEeeecCCCcEE
Confidence 1134677889999999999
Q ss_pred EEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC-----CEEEEEe-CCeE
Q 001178 783 LALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND-----SYVMSAG-GGKV 856 (1131)
Q Consensus 783 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg-----~~la~~~-dg~i 856 (1131)
+.|-.+|+|.+-+-. ........-+++...+|.+++|+|.. ..+++.+ +.++
T Consensus 148 alG~~nGTIsiRNk~----------------------gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL 205 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNKN----------------------GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL 205 (1081)
T ss_pred EEeccCceEEeecCC----------------------CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence 999999999875321 11122223456788999999999864 3666666 6677
Q ss_pred EEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEe
Q 001178 857 SLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG 936 (1131)
Q Consensus 857 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~ 936 (1131)
.+|.+. |+.+..-+.-.-...|+.+.+ +|.++..|+.|+.+.+|. ..|-.+.++-.....|+.++..|++++++.|+
T Consensus 206 SFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GC 282 (1081)
T KOG1538|consen 206 SFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGC 282 (1081)
T ss_pred EEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEE
Confidence 777774 445543333345578899999 999999999999999997 45767777777788999999999999999999
Q ss_pred CCCcEEEEEcCC
Q 001178 937 SDAQLIFWNTDT 948 (1131)
Q Consensus 937 ~Dg~v~lwd~~~ 948 (1131)
.||+|--|++-.
T Consensus 283 qDGTiACyNl~f 294 (1081)
T KOG1538|consen 283 QDGTIACYNLIF 294 (1081)
T ss_pred ccCeeehhhhHH
Confidence 999999998754
No 145
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.8e-21 Score=210.31 Aligned_cols=244 Identities=14% Similarity=0.271 Sum_probs=194.6
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCC---CcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCEE
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGL---RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFI 424 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~l 424 (1131)
.+..|+|+..-..+|||++..|.|.+||+.. .+.+. .+..|+..|+++.|++ ...+|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~-------------------~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT-------------------VFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhh-------------------HhhhhccceeeeeeccCCccEE
Confidence 5566788865556899999999999999976 22222 5789999999999999 46689
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~~ 502 (1131)
++|+.||+|++||++..+... ++.+....|.+++|+|...+ .++++.+.|.+++|| ...++...+..|.++|.|
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 999999999999999876443 56677889999999997655 899999999999999 556777889999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC-CCceEEEEEEccCCCE-EEEEeecCCCCceEEEEeCCCCee-
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-PGLWCTTMLYSADGSR-LFSCGTSKEGDSHLVEWNESEGAL- 579 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~~~- 579 (1131)
+.|+| ++.+|+||+.|++|+|||+........... ...++..+.|-|+..+ |++++. -.+..|+|||++..-+
T Consensus 226 ~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 226 LNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIP 301 (839)
T ss_pred EeecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccc
Confidence 99987 668999999999999999986655443333 3458999999998766 455543 3478999999987654
Q ss_pred eEEEecccCCceEEEEEeC-CCCEEEEEEcCCcEEEEEcCCC
Q 001178 580 KRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNV 620 (1131)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 620 (1131)
..++..|.+ .++.++|.. |...+.+++.||+|..-..++.
T Consensus 302 ~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 456666655 888899965 3457888999998876655543
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4e-20 Score=195.18 Aligned_cols=293 Identities=14% Similarity=0.193 Sum_probs=218.8
Q ss_pred Ccccceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEE
Q 001178 335 DLPRAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS 413 (1131)
Q Consensus 335 ~~~~~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 413 (1131)
.+|..+...+ +|++.|.|+...|.|. .||+|+.||+|+||.+.+|.++..-. ..+.|.
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--------------------~d~~I~ 445 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--------------------FDSEIR 445 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------ecceeE
Confidence 3466666655 5999999999999998 59999999999999999999986321 234799
Q ss_pred EEEEcCCCC--EEEEEeCCCeEEEEEecCC---------------------------------Cccc-eeeeeecCcCCe
Q 001178 414 RVAWSPDGN--FIGVAFTKHLIHLYTYQGS---------------------------------NDLC-QSLEIDAHVGGV 457 (1131)
Q Consensus 414 ~~~~spdg~--~las~~~d~~i~vwd~~~~---------------------------------~~~~-~~~~~~~h~~~V 457 (1131)
|++|+|.++ .||++..+. +.|-+..-| .... .......|...|
T Consensus 446 ~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i 524 (733)
T KOG0650|consen 446 SVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSI 524 (733)
T ss_pred EEEecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcc
Confidence 999999776 455543333 333332111 1111 011234588899
Q ss_pred eEEEEecCCCceEEEEEcC---CCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce
Q 001178 458 NDLAFSYPNKQLCIVTCGD---DKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS 533 (1131)
Q Consensus 458 ~~l~~s~d~~~~~l~s~s~---d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~ 533 (1131)
..+.|+..|. +|++... ...|.|++ ...+...-|+...+.|.++.|+|.. .+++.++ ...|++||+.....
T Consensus 525 ~~vtWHrkGD--YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~--p~lfVaT-q~~vRiYdL~kqel 599 (733)
T KOG0650|consen 525 RQVTWHRKGD--YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK--PYLFVAT-QRSVRIYDLSKQEL 599 (733)
T ss_pred ceeeeecCCc--eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC--ceEEEEe-ccceEEEehhHHHH
Confidence 9999999999 6776544 35688888 4444445566677889999999876 4566555 47899999988766
Q ss_pred eEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC-eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcE
Q 001178 534 RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQI 612 (1131)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 612 (1131)
...+.....+|.+++++|.|..|+.++. ++.+..+|+.-+ ++.+++..|.. .++.++|++.-+++++|+.||++
T Consensus 600 vKkL~tg~kwiS~msihp~GDnli~gs~----d~k~~WfDldlsskPyk~lr~H~~-avr~Va~H~ryPLfas~sdDgtv 674 (733)
T KOG0650|consen 600 VKKLLTGSKWISSMSIHPNGDNLILGSY----DKKMCWFDLDLSSKPYKTLRLHEK-AVRSVAFHKRYPLFASGSDDGTV 674 (733)
T ss_pred HHHHhcCCeeeeeeeecCCCCeEEEecC----CCeeEEEEcccCcchhHHhhhhhh-hhhhhhhccccceeeeecCCCcE
Confidence 6677777779999999999999999987 899999998754 45566665554 89999999999999999999999
Q ss_pred EEEEcC------CC---eEEEEEeccCCC--CCcceEEEcCCCCEEEEEECCCcEEEE
Q 001178 613 KFWDMD------NV---NMLTSTEAEGGL--PSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 613 ~iwd~~------~~---~~~~~~~~~~~~--~~i~~v~~sp~~~~l~~~~~dg~i~iw 659 (1131)
.||.-. .. -++..+..|... ..|..+.|+|...+|++++.||+|++|
T Consensus 675 ~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 675 IVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 998532 11 233445444321 237788899999999999999999998
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=2.8e-20 Score=198.14 Aligned_cols=287 Identities=18% Similarity=0.248 Sum_probs=209.1
Q ss_pred EEEe--cCCCcEEEEEcCCCeEEEEECCCCccc-ccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeC
Q 001178 353 MDFH--PFHHTLLVVGCGDGEITLWDVGLRERL-VSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT 429 (1131)
Q Consensus 353 ~~fs--pdg~~llasg~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~ 429 (1131)
+.|+ |+.+.+||.+..||.|.++|....... ....|+ ....|...|..+.|-|....|++++.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk--------------~~~aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLK--------------KPLAHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhc--------------ccccccceeEeeccCCCceeEEEccC
Confidence 4454 345568999999999999998754332 111111 35589999999999996678999999
Q ss_pred CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCc-------------------
Q 001178 430 KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGR------------------- 488 (1131)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~------------------- 488 (1131)
|.++++||++++...... .+.||.+.|.++||.|++.. .|++|+.||.|.||| .++.
T Consensus 121 DsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred Cceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 999999999998766543 47899999999999999887 899999999999999 2220
Q ss_pred -------eeEEecCCccCeE----EEeecccCCccEEEEEec-CCeEEEEeCCCCceeEE--------ecCC---CceEE
Q 001178 489 -------KLFQFEGHEAPVY----SVCPHQKENIHFIFSTAV-DGKIKAWLYDNVGSRVD--------YDAP---GLWCT 545 (1131)
Q Consensus 489 -------~~~~~~~h~~~v~----~~~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~--------~~~~---~~~v~ 545 (1131)
.+.....+...|. .+.| .|...|++++. |+.|+|||++....... +..+ ...+.
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 0111123333343 3443 44578888887 99999999987554332 1222 23578
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCC--eeeEEEecccCCceE-EEEEeCCCCEEEEEEcCCcEEEEEcCCCeE
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEG--ALKRTYIGFRKKSAG-VVQFDTTRNRILAAGEDNQIKFWDMDNVNM 622 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1131)
++.....|.+|++.+. |+.|+.|++.+- .++..+.++....+. .-..+|++.++++|+.|...++|.+.+.+.
T Consensus 276 nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred EEEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 8888888899887776 999999998753 244555555443333 245789999999999999999999987653
Q ss_pred E-EEEeccCCCCCcceEEEcCC-CCEEEEEECCCcEEEEecCCC
Q 001178 623 L-TSTEAEGGLPSLPRLRFNKE-GNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 623 ~-~~~~~~~~~~~i~~v~~sp~-~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
- ..+. ++...|++++|.|. -.-++++++|..+++|++.++
T Consensus 352 ~~~~l~--Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 352 PPALLL--GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred Chhhhh--CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 3 2233 34447899999873 234666799999999999766
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4.9e-20 Score=194.50 Aligned_cols=324 Identities=10% Similarity=0.157 Sum_probs=231.6
Q ss_pred ceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 402 ~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
..++.||++.|.|+...|.|.+||+|+.||+|+||.+.+|.|++.. .+ .+.|.|++|+|.+...+|+.+-.+. +.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~-~~---d~~I~~vaw~P~~~~~vLAvA~~~~-~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV-QF---DSEIRSVAWNPLSDLCVLAVAVGEC-VL 467 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-ee---cceeEEEEecCCCCceeEEEEecCc-eE
Confidence 3478999999999999999999999999999999999999988743 23 4469999999998864555554444 76
Q ss_pred EEe-CCCceeEEecCCccCeEEEeecccCCccEEEEE----ecCCeEEEEeCCCCc----eeEEecCCCceEEEEEEccC
Q 001178 482 VWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST----AVDGKIKAWLYDNVG----SRVDYDAPGLWCTTMLYSAD 552 (1131)
Q Consensus 482 iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----s~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~ 552 (1131)
|-+ .-|..+..-. +. ..|+++ ..++.+..|.-.... .+.....+...|..+.|+..
T Consensus 468 ivnp~~G~~~e~~~--t~-------------ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGP--TK-------------ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred EeCccccchhhhcc--hh-------------hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 776 4442221110 00 111111 235567778644211 12244456778999999999
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCC
Q 001178 553 GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1131)
Q Consensus 553 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1131)
|.||++... .++...|.|.++.......-|....+ .+.++.|+|...+|++++. ..|+|||+..++.+..+... .
T Consensus 533 GDYlatV~~-~~~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg--~ 607 (733)
T KOG0650|consen 533 GDYLATVMP-DSGNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG--S 607 (733)
T ss_pred CceEEEecc-CCCcceEEEEecccccccCchhhcCC-ceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--C
Confidence 999999874 23467889999887766655654333 7889999999999988876 57999999987776665533 3
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCC
Q 001178 633 PSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPA 712 (1131)
Q Consensus 633 ~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~ 712 (1131)
..|..++.+|.|..|+.|+.|+.+..+|+.-.....+.+..
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~--------------------------------------- 648 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL--------------------------------------- 648 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh---------------------------------------
Confidence 37899999999999999999999999998766555555433
Q ss_pred CccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceee
Q 001178 713 RPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQK 792 (1131)
Q Consensus 713 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 792 (1131)
|...+++++|.+.-..+++++.||++.
T Consensus 649 -----------------------------------------------------H~~avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 649 -----------------------------------------------------HEKAVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred -----------------------------------------------------hhhhhhhhhhccccceeeeecCCCcEE
Confidence 556667777877778888888888887
Q ss_pred EEeecCCCCCCCCccceeeeceeec-CC-CCcccccCCCCCCCC----CeeEEEecCCCCEEEEEe-CCeEEEE
Q 001178 793 LWKWNRTEQNPSGKATAAVAPQHWQ-PS-NGLLMTNDVPENAED----VVPCVALSKNDSYVMSAG-GGKVSLF 859 (1131)
Q Consensus 793 iw~~~~~~~~~~~~~~~~~~~~~w~-~~-~~~~~~~~~~~~~~~----~i~~l~~s~dg~~la~~~-dg~i~vw 859 (1131)
+|--. +++ +. +-.++-.....+|.. .|....|+|..-+|.+++ ||+|++|
T Consensus 676 Vfhg~-----------------VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 676 VFHGM-----------------VYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEeee-----------------eehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 76421 111 11 111111111223443 488899999999999988 8999998
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=4.5e-20 Score=196.54 Aligned_cols=288 Identities=14% Similarity=0.148 Sum_probs=205.3
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEE
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVS 857 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~ 857 (1131)
...|+.+.++|.|.++|.....+.++.. ++ . ....|...|..+.|-|....|++++ |.+++
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~---------------~l-k--~~~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEER---------------QL-K--KPLAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhh---------------hh-c--ccccccceeEeeccCCCceeEEEccCCceee
Confidence 3456667779999999876543331111 00 0 1115899999999999666777777 88999
Q ss_pred EEECCCceeEEE--EeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce---------------------------
Q 001178 858 LFNMMNFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE--------------------------- 908 (1131)
Q Consensus 858 vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~--------------------------- 908 (1131)
+||+++.++... +.+|.+.|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999999999887 889999999999999899999999999999999986321
Q ss_pred eEEeecccccCeeE---EEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeee-e---ecCCC-CCCCCceEEEEcCCCcE
Q 001178 909 VKTKLKGHQKHITG---LAFSTNLNILVSSGS-DAQLIFWNTDTWEKRKSIA-I---QLPAG-KLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 909 ~~~~~~~h~~~V~~---l~~s~dg~~l~s~~~-Dg~v~lwd~~~~~~~~~~~-~---~~~~~-~~~~~v~~v~~s~d~~~ 979 (1131)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+.+........ . ..+.. .....+.++.....|.+
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 11223356666666 667778899999998 9999999999855322211 1 11111 11245677777888888
Q ss_pred EEE-EeCCeEEEEeCCCcc--cceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCC
Q 001178 980 LLV-NHETQLAIYDGSKME--CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQA 1056 (1131)
Q Consensus 980 l~~-~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1056 (1131)
|++ +.|+.|++|++.+.. .+..+.++......| .-..|||+.+|++|+.|...++|.+.+.+.--.+..
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~------- 357 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLL------- 357 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCcceeeeeecCccCChhhhh-------
Confidence 876 679999999998633 333333332212223 335799999999999999999999987654322211
Q ss_pred CCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCC
Q 001178 1057 SPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSET 1096 (1131)
Q Consensus 1057 ~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~ 1096 (1131)
++.+.+.+|+|.|..-.-++++++|-++++|++..+
T Consensus 358 ----Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 358 ----GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ----CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 222444577888876677899999999999999644
No 150
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=1.8e-19 Score=182.27 Aligned_cols=302 Identities=18% Similarity=0.226 Sum_probs=215.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
...+|.++.|.+++...+|||+.|..|+||.++.++.-... ....-...+..|...|+++.|+|+|..||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCcCeee
Confidence 45699999999988756999999999999999876543210 01112346889999999999999999999
Q ss_pred EEeCCCeEEEEEec--------C-----CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeE
Q 001178 426 VAFTKHLIHLYTYQ--------G-----SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF 491 (1131)
Q Consensus 426 s~~~d~~i~vwd~~--------~-----~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~ 491 (1131)
+|+++|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|+.+++|| ..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 2 111233456789999999999999999 899999999999999 8999999
Q ss_pred EecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec-------------------CCC----ceEEEEE
Q 001178 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-------------------APG----LWCTTML 548 (1131)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------------------~~~----~~v~~~~ 548 (1131)
.+.+|...|..++|.|.. +++++-+.|...+.+.+...+...... .|. .-...++
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 999999999999997644 788888888866666554332221110 011 1245678
Q ss_pred EccCCCEEEEEeecCCC-----CceEEEEeCCCC-eeeEEEecccCCceEEEEEeC------------------CCCEEE
Q 001178 549 YSADGSRLFSCGTSKEG-----DSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDT------------------TRNRIL 604 (1131)
Q Consensus 549 ~s~~g~~l~~~~~~~~~-----~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~------------------~~~~l~ 604 (1131)
|+|||.++++.+.--.- -+..++++...- ++...+.+... ....+.|+| .+-.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 99999999876421010 223455553321 22222322222 233333332 223344
Q ss_pred EEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 605 AAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.++ .+.+++||.++-.++.....- |...|+.++|++||..++..+.||...+..++..
T Consensus 317 iAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred Eee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 454 467999999988877665432 3348999999999999999999999888877655
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.4e-19 Score=185.05 Aligned_cols=254 Identities=13% Similarity=0.162 Sum_probs=192.3
Q ss_pred EEEEEEcC-------CCCEEEEEeCCCeEEEEEecCCCccceeee------------------eecCcCCeeEEEEecCC
Q 001178 412 VSRVAWSP-------DGNFIGVAFTKHLIHLYTYQGSNDLCQSLE------------------IDAHVGGVNDLAFSYPN 466 (1131)
Q Consensus 412 V~~~~~sp-------dg~~las~~~d~~i~vwd~~~~~~~~~~~~------------------~~~h~~~V~~l~~s~d~ 466 (1131)
-.|++|.. -|+++|.|+.|..|.|||+.--..+.+... -.+|+..|.+++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 367999999999999999854322222222 23799999999999988
Q ss_pred CceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEE
Q 001178 467 KQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCT 545 (1131)
Q Consensus 467 ~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1131)
+. .|+|||.|.+|++|| .+|++...+..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+........-.-.+.|.
T Consensus 256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 77 899999999999999 8999999999999999999999854 47999999999999999985332221112234588
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCC-eeeEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEE
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNML 623 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~ 623 (1131)
.++|.|.....+.++. .+|+++-+|++.. +++.++..|.+ .|.++++++.- .++++++.|+.+++|++......
T Consensus 334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 9999998777666654 3899999999874 89999998776 89999998765 47888999999999998764432
Q ss_pred EEEeccCCCCCcceEEEcCCC-CEEEEEECCCcEEEEecCCCchhhhhh
Q 001178 624 TSTEAEGGLPSLPRLRFNKEG-NLLVVTTADQGIKILANADGLRALRAI 671 (1131)
Q Consensus 624 ~~~~~~~~~~~i~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~ 671 (1131)
.............|.++.|+- ..++.|+..+.+++||+.+.....+.+
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence 222111122235666777754 466778888889999998875444433
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.2e-19 Score=172.90 Aligned_cols=264 Identities=13% Similarity=0.232 Sum_probs=194.4
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC--CCC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~ 422 (1131)
+|.+-|.|+.|.+-|++ +|+|+.|++|.|||.....-. |. .....+.|.+.|..+.|.+ -|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~-------W~--------~Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGT-------WS--------CTSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCc-------eE--------EeeeEEecCCcEEEEEecCccccc
Confidence 48899999999999997 899999999999997543321 11 1123668999999999976 599
Q ss_pred EEEEEeCCCeEEEEEecC------CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCce------
Q 001178 423 FIGVAFTKHLIHLYTYQG------SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK------ 489 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~------~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~------ 489 (1131)
.+|+++.|+++.||.-.. +..-....++......|+++.|.|....+.+++++.||.+|||+ ..--.
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 999999999999998632 11222334566677899999999988777999999999999999 33211
Q ss_pred eEEec-------CCccCeEEEeecccCCc-cEEEEEecC-----CeEEEEeCCCCce----eEEecCCCceEEEEEEccC
Q 001178 490 LFQFE-------GHEAPVYSVCPHQKENI-HFIFSTAVD-----GKIKAWLYDNVGS----RVDYDAPGLWCTTMLYSAD 552 (1131)
Q Consensus 490 ~~~~~-------~h~~~v~~~~~~~~~~~-~~l~s~s~d-----g~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~ 552 (1131)
...+. .+..+..|+.|+++.-. .+|+.|+.+ +.++||....... ..++..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 12222 46677889998865432 466666655 4889998766542 2356788899999999996
Q ss_pred C----CEEEEEeecCCCCceEEEEeCCCC--------------------eeeEEEecccCCceEEEEEeCCCCEEEEEEc
Q 001178 553 G----SRLFSCGTSKEGDSHLVEWNESEG--------------------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGE 608 (1131)
Q Consensus 553 g----~~l~~~~~~~~~~~~i~iwd~~~~--------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 608 (1131)
- ..||+++. || |+||.+... +.+..+..|.. .|..+.|+-.|..|.+.|.
T Consensus 235 ~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 235 IGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred cCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCC
Confidence 3 45777765 77 999988631 12334555544 8999999999999999999
Q ss_pred CCcEEEEEcCC---CeEEEEEeccC
Q 001178 609 DNQIKFWDMDN---VNMLTSTEAEG 630 (1131)
Q Consensus 609 dg~i~iwd~~~---~~~~~~~~~~~ 630 (1131)
||.|++|...- .++...+...+
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e~ 333 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAEG 333 (361)
T ss_pred CceeeehhhhhhhhheeeeEEeccC
Confidence 99999997653 23444444443
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.8e-19 Score=173.17 Aligned_cols=256 Identities=11% Similarity=0.166 Sum_probs=191.7
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCC-ccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN-DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 482 (1131)
+-.+|.+-|.++.|.+.|+++|+|+.|++|+|||.+... ........+.|.+.|..+.|.+..-...+++|+.|+++.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 345899999999999999999999999999999964433 3445556889999999999987532228999999999999
Q ss_pred EeC-C------C---ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE------Eec-------C
Q 001178 483 WDL-S------G---RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV------DYD-------A 539 (1131)
Q Consensus 483 wd~-~------~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~------~~~-------~ 539 (1131)
|.. . | ....++......|+.++|.|..-|-.+++++.||.+|||+.-...... ++. .
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 982 1 1 123556677889999999999999999999999999999865433222 111 2
Q ss_pred CCceEEEEEEccC---CCEEEEEeec-CCCCceEEEEeCCCC--e--eeEEEecccCCceEEEEEeCCC----CEEEEEE
Q 001178 540 PGLWCTTMLYSAD---GSRLFSCGTS-KEGDSHLVEWNESEG--A--LKRTYIGFRKKSAGVVQFDTTR----NRILAAG 607 (1131)
Q Consensus 540 ~~~~v~~~~~s~~---g~~l~~~~~~-~~~~~~i~iwd~~~~--~--~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~ 607 (1131)
+..+..|+.|+|. ..+|++++.+ ....+.++||....+ + .+..+.++.. +|+.++|.|+- ..|++++
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEee
Confidence 3446788999874 4567777632 112346777765433 2 3445666555 99999999974 4788999
Q ss_pred cCCcEEEEEcCCCe-----------------EEEEE-eccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 608 EDNQIKFWDMDNVN-----------------MLTST-EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 608 ~dg~i~iwd~~~~~-----------------~~~~~-~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
.|| |+||++.... .+..+ ....|...|..+.|+-.|..|++.+.||.|++|..
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 999 9999987311 12222 23455668999999999999999999999999975
No 154
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=4e-21 Score=207.32 Aligned_cols=233 Identities=11% Similarity=0.198 Sum_probs=207.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
|...|.|+..-..++ ++++|+.|..+-+|.+..-..+. .+.+|..+|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhhc
Confidence 888899998855665 79999999999999886543332 3679999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVC 504 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~ 504 (1131)
+|+.+|+|++||++.++.++ ++.||...+.+++|+|-+. ++++|+.|+.+++|| ....+.+.+.+|...|.++.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999987666 7899999999999999999 789999999999999 66889999999999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEe
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 584 (1131)
|. ++|.++++++.|..+++||+..++....|..|...+.++.|+|..-+++.|+. +..+++||+++.+.+....
T Consensus 162 ls--P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LS--PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ec--CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 95 56799999999999999999999999999999999999999999999999987 9999999999988887776
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCC
Q 001178 585 GFRKKSAGVVQFDTTRNRILAAGEDN 610 (1131)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg 610 (1131)
.... .|.+..|+|++..+++|....
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CccC-CceeeeecCCceeeecCchhh
Confidence 6544 799999999999888876543
No 155
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=8e-20 Score=199.10 Aligned_cols=297 Identities=13% Similarity=0.168 Sum_probs=222.0
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFI 424 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~l 424 (1131)
-.....++...++-..++..| ...+.||.+....... ++.+.+-. -..-.-.+..++|+. +.++|
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~--~~~~~~k~----------kqn~~~S~~DVkW~~~~~NlI 103 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSE--KCNHRFKT----------KQNKFYSAADVKWGQLYSNLI 103 (839)
T ss_pred cccccceEeecCCcceeEEec--ccceeeEeeCcccCCc--ceeeeccc----------ccceeeehhhcccccchhhhh
Confidence 345677777888876644444 3477788776543221 11111100 001112345678876 67899
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
|+++..|.|.+||+.....-+....+..|+..|++++|++-..+ +|+|||.||+|++|| ...+...++.+....|..+
T Consensus 104 AT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV 182 (839)
T KOG0269|consen 104 ATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV 182 (839)
T ss_pred eeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhce
Confidence 99999999999999773222333467899999999999998877 899999999999999 7777788888888999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCc-eeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 582 (1131)
.|+|.. +.+++++.+.|.+++||++... ....+..|.++|.++.|+|++.+||+||. |+.|+|||..+++....
T Consensus 183 ~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 183 KFSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPK 257 (839)
T ss_pred eeccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCccce
Confidence 999865 5899999999999999998754 44578899999999999999999999997 99999999987766555
Q ss_pred EecccCCceEEEEEeCCCC-EEEEEE--cCCcEEEEEcCCCe-EEEEEeccCCCCCcceEEEcC-CCCEEEEEECCCcEE
Q 001178 583 YIGFRKKSAGVVQFDTTRN-RILAAG--EDNQIKFWDMDNVN-MLTSTEAEGGLPSLPRLRFNK-EGNLLVVTTADQGIK 657 (1131)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~v~~sp-~~~~l~~~~~dg~i~ 657 (1131)
..-+...++..+.|-|... +|++++ .|-.|+|||++..- +..++..|.. .++.++|.. |...+.+++.||++.
T Consensus 258 ~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~--~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 258 HTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD--SVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc--cccceeccCCCceeeEeecCccHHH
Confidence 5555666899999999876 455544 58899999997643 3444554443 788899966 456778888888876
Q ss_pred EEecCCC
Q 001178 658 ILANADG 664 (1131)
Q Consensus 658 iw~~~~~ 664 (1131)
.-.+.+.
T Consensus 336 qh~~kna 342 (839)
T KOG0269|consen 336 QHLFKNA 342 (839)
T ss_pred Hhhhhcc
Confidence 5554444
No 156
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=6.5e-19 Score=176.12 Aligned_cols=250 Identities=18% Similarity=0.243 Sum_probs=188.2
Q ss_pred CCCCCeeEEEecCCCCEEEEEe---CCeEEEEECCC----------------ceeEEEEeCCCCCeeEEEEeCCCCcEEE
Q 001178 831 NAEDVVPCVALSKNDSYVMSAG---GGKVSLFNMMN----------------FKVMTTFMSPPPASTFLAFHPQDNNIIA 891 (1131)
Q Consensus 831 ~~~~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~----------------~~~~~~~~~~~~~i~~l~~s~~~~~~la 891 (1131)
.|.+.+..+..++-|+-.++++ .|.|.||++.. .+.+.++.+|...=.+++|||-..-.|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 4677777788777765555444 59999999852 3567788899988899999994344577
Q ss_pred EEeCCCcEEEEEeecceeE---EeecccccCeeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCC
Q 001178 892 IGMEDSTIQIYNVRVDEVK---TKLKGHQKHITGLAFSTN-LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVG 967 (1131)
Q Consensus 892 ~g~~dg~I~iwd~~~~~~~---~~~~~h~~~V~~l~~s~d-g~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 967 (1131)
+|.--+.|++|...++.-. ..+.+|...|-.|+|||. ...++|||-||+|+|||+..+........ ..+.+.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~----kAh~sD 304 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST----KAHNSD 304 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe----eccCCc
Confidence 8888899999999887432 346789999999999997 45799999999999999999754333333 223368
Q ss_pred ceEEEEcCCCcEEEEEe-CCeEEEEeCCC---cccceeeecCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECCCCc
Q 001178 968 ETRVQFHSDQVRLLVNH-ETQLAIYDGSK---MECIRQWVPQDVLSSPISSAAYSCN-SQLIYATFTDGSIGVFDADSLR 1042 (1131)
Q Consensus 968 v~~v~~s~d~~~l~~~~-d~~i~vwd~~~---~~~~~~~~~~~~~~~~v~~i~~s~d-g~~l~s~~~dg~i~vwd~~~~~ 1042 (1131)
|..|.|+..-.+||+|. ||.++|||+++ ++.+..+.-| ..+|+++.|+|. ...|++++.|..|.+||+..-.
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H---k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH---KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec---cCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 99999999988888874 89999999986 5566666666 899999999984 5688888899999999986432
Q ss_pred e-----------eeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEec
Q 001178 1043 L-----------RCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1043 ~-----------~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~ 1093 (1131)
- +..+.+.. +. .|.++...-.+.|+++-+.+|++.+.|| +.||..
T Consensus 382 D~ee~~~~a~~~L~dlPpQL-LF----VHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfkt 437 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQL-LF----VHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFKT 437 (440)
T ss_pred ChhhhccccccchhcCCcee-EE----EecchhHhhhheeccCCCCeEEEecccc-eeEEEe
Confidence 2 11111111 11 1233444446899999999999999999 777753
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.1e-19 Score=207.62 Aligned_cols=251 Identities=16% Similarity=0.254 Sum_probs=202.7
Q ss_pred CCCEEEEEEcCCCCE----EEEEeCCCeEEEEEecC---CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 409 SISVSRVAWSPDGNF----IGVAFTKHLIHLYTYQG---SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~----las~~~d~~i~vwd~~~---~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
....+.++|.+.|.. ||.|..||.|.+||... +.......+...|++.|..+.|++.... +|++|+.||.|.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~ 142 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEIL 142 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEE
Confidence 457889999998775 89999999999999866 3334444567889999999999998876 899999999999
Q ss_pred EEeC-CCceeEEec--CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCc--eEEEEEEccCCCEE
Q 001178 482 VWDL-SGRKLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL--WCTTMLYSADGSRL 556 (1131)
Q Consensus 482 iwd~-~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l 556 (1131)
|||. .-+.-..+. .....|.+++|+. ...++|++++.+|++.|||++..+.+..+..+.. .+..+.|+|++..-
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNr-kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNR-KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccch-hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 9993 322222331 2456899999975 3447899999999999999999988887766554 57899999987554
Q ss_pred EEEeecCCCCceEEEEeCCCC-eeeEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCC
Q 001178 557 FSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS 634 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1131)
+....+.+..-.|.+||++.. ..++.+.+|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+. .
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W 298 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--W 298 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--c
Confidence 444445677889999998764 45677777655 78899999877 7889999999999999999999999887554 7
Q ss_pred cceEEEcCCCC-EEEEEECCCcEEEEecCCC
Q 001178 635 LPRLRFNKEGN-LLVVTTADQGIKILANADG 664 (1131)
Q Consensus 635 i~~v~~sp~~~-~l~~~~~dg~i~iw~~~~~ 664 (1131)
+..+.|.|... .+++++-||.|.|+.+...
T Consensus 299 ~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 299 CFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred eeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 89999999665 8888999999999998765
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=5.9e-16 Score=181.41 Aligned_cols=371 Identities=23% Similarity=0.402 Sum_probs=278.7
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCc-CCeeEEEE-ecCCCceEEEE-EcCCCcEE
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAF-SYPNKQLCIVT-CGDDKLIR 481 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~l~~-s~d~~~~~l~s-~s~d~~i~ 481 (1131)
...|...|.++.|.+++..++.++.|+.+.+|+...+. .....+.++. ..+..+.+ ++++.. .++. +..|+.++
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcce-EEeccCCCCccEE
Confidence 55789999999999999999999999999999998875 1222455533 37777777 777763 3444 44599999
Q ss_pred EEeCC--CceeEEecCCccCeEEEeecccCCccEEEEEec-CCeEEEEeCCCCceeEEecCCCceEEEEEEccCCC-EEE
Q 001178 482 VWDLS--GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS-RLF 557 (1131)
Q Consensus 482 iwd~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~ 557 (1131)
+||.. ......+..|...|..++|++.. ..+++++. |+.+++|+.........+..|...+.++.|+|++. .++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 99944 58888899999999999997654 57888875 99999999998777778888889999999999998 444
Q ss_pred EEeecCCCCceEEEEeCCCCeeeE-EEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeE-EEEEeccCCCCCc
Q 001178 558 SCGTSKEGDSHLVEWNESEGALKR-TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM-LTSTEAEGGLPSL 635 (1131)
Q Consensus 558 ~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i 635 (1131)
+++. ++.|.+||...+.... .+.+|.. .. ...|++++..+++++.|+.+++|+...... +... ..+...+
T Consensus 216 ~~~~----d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v 287 (466)
T COG2319 216 SGSS----DGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSV 287 (466)
T ss_pred EecC----CCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccE
Confidence 4344 8899999988888877 5777665 33 338999998899999999999999987664 4444 3334589
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcc
Q 001178 636 PRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPS 715 (1131)
Q Consensus 636 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~ 715 (1131)
.++.|+|++..+++++.|+.+.+|+......... .
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----------------------------~---------------- 322 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS-----------------------------L---------------- 322 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE-----------------------------e----------------
Confidence 9999999888888888898899997654410000 0
Q ss_pred ccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEe
Q 001178 716 TILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1131)
Q Consensus 716 ~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1131)
. .
T Consensus 323 ----------------------------------------------------------~------------~-------- 324 (466)
T COG2319 323 ----------------------------------------------------------T------------L-------- 324 (466)
T ss_pred ----------------------------------------------------------e------------e--------
Confidence 0 0
Q ss_pred ecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEE-e-CCeEEEEECCCceeEEEEeCC
Q 001178 796 WNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA-G-GGKVSLFNMMNFKVMTTFMSP 873 (1131)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~~ 873 (1131)
..|...+..+.+.+++..++.+ . ++.+.+|++............
T Consensus 325 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 370 (466)
T COG2319 325 ----------------------------------KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370 (466)
T ss_pred ----------------------------------cccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC
Confidence 0123345555553232444444 3 677888888777633333222
Q ss_pred CCCeeEEEEeCCCCcEEEE-EeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001178 874 PPASTFLAFHPQDNNIIAI-GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 874 ~~~i~~l~~s~~~~~~la~-g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~ 948 (1131)
..+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..+++++.++.+++|+...
T Consensus 371 -~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 371 -SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred -ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 2288899998 6 55554 88999999999998887776665547899999999999999999999999999987
No 159
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=1.8e-18 Score=173.08 Aligned_cols=266 Identities=16% Similarity=0.241 Sum_probs=187.4
Q ss_pred ccceeeeccCCCcEEEEEEecCCC-cEEEEEcCCCeEEEEECCCCcccc-cccceeecccccccceeceeccCCCCCEEE
Q 001178 337 PRAVACTMHQGSSVVSMDFHPFHH-TLLVVGCGDGEITLWDVGLRERLV-SKPFKIWDMSNCSMMLQAAIVKDSSISVSR 414 (1131)
Q Consensus 337 ~~~~~~~~~h~~~V~~~~fspdg~-~llasg~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 414 (1131)
|......+.|.+.|+-+.-++-|+ .+.|+-+..|.|.|||+...-... .-.+.+-+ +...+..++.+|...=..
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 444455567888888888888753 356667888999999985421110 00000000 111223367899999999
Q ss_pred EEEcCCC-CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC---ce
Q 001178 415 VAWSPDG-NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG---RK 489 (1131)
Q Consensus 415 ~~~spdg-~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~---~~ 489 (1131)
++|||-. -.|++|..-+.|++|...+|.-..-...+.+|+..|..++|||..+. +|+|||.|++|+||| ..+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 9999932 25778888889999999987644334467889999999999998877 899999999999999 555 23
Q ss_pred eEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC---ceeEEecCCCceEEEEEEccCCCE-EEEEeecCCC
Q 001178 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV---GSRVDYDAPGLWCTTMLYSADGSR-LFSCGTSKEG 565 (1131)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~~~~~ 565 (1131)
+. .+.|.+.|+.+.|+... .+|++|+.||+++|||++.. +....+..|..+|+++.|+|.... +++++.
T Consensus 296 ~~-~kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~---- 368 (440)
T KOG0302|consen 296 VS-TKAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE---- 368 (440)
T ss_pred eE-eeccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC----
Confidence 33 37899999999996544 48999999999999999864 455688899999999999996544 444443
Q ss_pred CceEEEEeCCCCee----------------eEEEecc-cCCceEEEEEeCCC-CEEEEEEcCCcEEEE
Q 001178 566 DSHLVEWNESEGAL----------------KRTYIGF-RKKSAGVVQFDTTR-NRILAAGEDNQIKFW 615 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~----------------~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw 615 (1131)
|.+|.+||+....- .+.+..| -+..+.-+.|++.- .++++.+.|| +.||
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 89999999853111 0111112 11245567888765 4677777777 4444
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=1.2e-15 Score=178.92 Aligned_cols=289 Identities=27% Similarity=0.420 Sum_probs=219.2
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCc-ccccccceeecccccccceeceeccCCC-CCEEEEEE-cC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRE-RLVSKPFKIWDMSNCSMMLQAAIVKDSS-ISVSRVAW-SP 419 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~-sp 419 (1131)
...|...|.++.|.+.+. .++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ ++
T Consensus 61 ~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 120 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIK-------------------SLEGLHDSSVSKLALSSP 120 (466)
T ss_pred eeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEE-------------------EEeccCCCceeeEEEECC
Confidence 345899999999999998 57888889999999998876 222 122322 46777777 88
Q ss_pred CCC-EEEEEeC-CCeEEEEEecC-CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC-CCcEEEEe-CCCceeEEec
Q 001178 420 DGN-FIGVAFT-KHLIHLYTYQG-SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD-DKLIRVWD-LSGRKLFQFE 494 (1131)
Q Consensus 420 dg~-~las~~~-d~~i~vwd~~~-~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~-d~~i~iwd-~~~~~~~~~~ 494 (1131)
++. .++..+. |+.+.+|+... .. ....+..|...|.+++|+|++. .+++++. |+.+++|+ ..+..+..+.
T Consensus 121 ~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (466)
T COG2319 121 DGNSILLASSSLDGTVKLWDLSTPGK---LIRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLA 195 (466)
T ss_pred CcceEEeccCCCCccEEEEEecCCCe---EEEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeec
Confidence 888 5555444 99999999987 33 2335788999999999999999 6788875 99999999 6678888999
Q ss_pred CCccCeEEEeecccCCcc-EEEEEecCCeEEEEeCCCCceeE-EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEE
Q 001178 495 GHEAPVYSVCPHQKENIH-FIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 572 (1131)
+|...|.+++|. +++. .+++++.|+.|++||........ .+..+.... ...|++++.++++++. ++.+++|
T Consensus 196 ~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~~ 268 (466)
T COG2319 196 GHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRLW 268 (466)
T ss_pred cCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEEe
Confidence 999999999997 4444 55556999999999888666655 566666654 3389999988887765 8999999
Q ss_pred eCCCCee-eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEE-
Q 001178 573 NESEGAL-KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT- 650 (1131)
Q Consensus 573 d~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~- 650 (1131)
+...... ...+.+| ...+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++.+
T Consensus 269 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (466)
T COG2319 269 DLRSSSSLLRTLSGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347 (466)
T ss_pred eecCCCcEEEEEecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEee
Confidence 9987664 4444444 458999999998888888888999999999888766666522222257888883332455555
Q ss_pred ECCCcEEEEecCCC
Q 001178 651 TADQGIKILANADG 664 (1131)
Q Consensus 651 ~~dg~i~iw~~~~~ 664 (1131)
..|+.+.+|+....
T Consensus 348 ~~d~~~~~~~~~~~ 361 (466)
T COG2319 348 SDDGTIRLWDLRTG 361 (466)
T ss_pred cCCCcEEeeecCCC
Confidence 56777777776543
No 161
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.81 E-value=5.4e-18 Score=166.22 Aligned_cols=408 Identities=13% Similarity=0.141 Sum_probs=248.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEE
Q 001178 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQ 492 (1131)
Q Consensus 414 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 492 (1131)
-++|||+|+++|+++.- .+.|-|..+-+..+ +...-..|..+.|..|.-. .+.....|+.|.+|+ ..-+--.+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH----HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 47899999999999765 78888887754332 1122456888999998875 677778899999999 66666677
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEE
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 572 (1131)
+.....++.+++|+|++. .+|.+...|-+|.+|.+.+...... ......+..++|+|||++.+.++. .|-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeec-ccHHHHHHHH
Confidence 888888999999976432 5777888899999999987665442 334445789999999999998874 2222223333
Q ss_pred eCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEc--CCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001178 573 NESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGE--DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1131)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~ 650 (1131)
..+.-.+++.+..... ..+.+.|+|||+.+++-.. +-.|+.|... -.+..++|+|.++++++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEee
Confidence 2233334445544333 4667899999988776432 2223322221 147889999999999999
Q ss_pred ECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCC
Q 001178 651 TADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEK 730 (1131)
Q Consensus 651 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 730 (1131)
+.|+.+|+.+--+-. .+..+. |...+...... .+-...+++- .+
T Consensus 229 syD~~lrvlnh~tWk-~f~efl-hl~s~~dp~~~-----~~~ke~~~~~-----------------ql------------ 272 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTWK-PFGEFL-HLCSYHDPTLH-----LLEKETFSIV-----------------QL------------ 272 (447)
T ss_pred ccchhhhhhceeeee-ehhhhc-cchhccCchhh-----hhhhhhcchh-----------------hh------------
Confidence 999999986643321 111110 00000000000 0000000000 00
Q ss_pred ceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCcccee
Q 001178 731 PRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAA 810 (1131)
Q Consensus 731 ~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 810 (1131)
. . | ++.|.|..-..-. +.. .-.+|.....
T Consensus 273 --------------~-------~------------~-----cLsf~p~~~~a~~-~~~-se~~YE~~~~----------- 301 (447)
T KOG4497|consen 273 --------------L-------H------------H-----CLSFTPTDLEAHI-WEE-SETIYEQQMT----------- 301 (447)
T ss_pred --------------c-------c------------c-----ccccCCCccccCc-ccc-chhhhhhhhc-----------
Confidence 0 0 0 0111111000000 000 0000000000
Q ss_pred eeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeC---CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCC
Q 001178 811 VAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG---GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDN 887 (1131)
Q Consensus 811 ~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 887 (1131)
.+.+ ..-+.. .+.+ .....+.-++||+|..++++-.| +.+-+||++..+....+. ...+|.+..|.| +.
T Consensus 302 -pv~~---~~lkp~-tD~p-nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~ 373 (447)
T KOG4497|consen 302 -PVKV---HKLKPP-TDFP-NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GR 373 (447)
T ss_pred -ceee---ecccCC-CCCC-CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CC
Confidence 0000 000000 0111 23556778999999999999886 569999999877665554 356799999999 67
Q ss_pred cEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcE
Q 001178 888 NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQL 941 (1131)
Q Consensus 888 ~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v 941 (1131)
..|+.......+++|......++..-. ..-.|..+.|..+|..++-.+.|...
T Consensus 374 prL~vctg~srLY~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 374 PRLVVCTGKSRLYFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred ceEEEEcCCceEEEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCceE
Confidence 777777777789999977655554432 33679999999999999999999743
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=2.8e-18 Score=177.07 Aligned_cols=215 Identities=16% Similarity=0.290 Sum_probs=170.8
Q ss_pred EEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe
Q 001178 773 LLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG 852 (1131)
Q Consensus 773 l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 852 (1131)
++......++++++..+.++|||+.. +++.. ...+|...|+++.+.-...|||+++
T Consensus 85 v~~~s~S~y~~sgG~~~~Vkiwdl~~-----------------------kl~hr-~lkdh~stvt~v~YN~~DeyiAsvs 140 (673)
T KOG4378|consen 85 VACASQSLYEISGGQSGCVKIWDLRA-----------------------KLIHR-FLKDHQSTVTYVDYNNTDEYIASVS 140 (673)
T ss_pred HhhhhcceeeeccCcCceeeehhhHH-----------------------HHHhh-hccCCcceeEEEEecCCcceeEEec
Confidence 33333447889999999999888643 12221 3346899999999999999999999
Q ss_pred -CCeEEEEECCCceeEEEEeCCC-CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe-ecccccCeeEEEEccCC
Q 001178 853 -GGKVSLFNMMNFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFSTNL 929 (1131)
Q Consensus 853 -dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~s~dg 929 (1131)
.|.|.|-.+.++..-.+|.... ..|.-+.|+|....+|.+++.+|.|.+||+....++.. .+.|..+...++|+|..
T Consensus 141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn 220 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN 220 (673)
T ss_pred cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc
Confidence 6889999999998888887553 45669999996677888999999999999987766654 47899999999999964
Q ss_pred -CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcc-cceeeecCC
Q 001178 930 -NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKME-CIRQWVPQD 1006 (1131)
Q Consensus 930 -~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~-~~~~~~~~~ 1006 (1131)
.+|++.|.|+.|.+||+...+....... ..+...++|+++|.+|++|. .|.|..||++..+ .+..+..|
T Consensus 221 e~l~vsVG~Dkki~~yD~~s~~s~~~l~y-------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah- 292 (673)
T KOG4378|consen 221 EALLVSVGYDKKINIYDIRSQASTDRLTY-------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH- 292 (673)
T ss_pred cceEEEecccceEEEeecccccccceeee-------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec-
Confidence 5789999999999999987544333222 26789999999999999985 8999999999644 44555455
Q ss_pred CCCCCeEEEEEccCC
Q 001178 1007 VLSSPISSAAYSCNS 1021 (1131)
Q Consensus 1007 ~~~~~v~~i~~s~dg 1021 (1131)
...|++++|-+..
T Consensus 293 --~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 293 --DASVTRVAFQPSP 305 (673)
T ss_pred --ccceeEEEeeecc
Confidence 7789999998764
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=4.7e-18 Score=167.07 Aligned_cols=299 Identities=14% Similarity=0.202 Sum_probs=201.1
Q ss_pred CCccceEEEEeec----CCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEE
Q 001178 765 DSASKVARLLYTN----SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVA 840 (1131)
Q Consensus 765 ~~~~~i~~l~~s~----~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~ 840 (1131)
.|..+|..++|.+ +...+++......+.+|....+.. + +++.......+......++
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~-----------i--------r~lq~y~D~d~~Esfytcs 96 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGG-----------I--------RLLQSYADEDHDESFYTCS 96 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccc-----------e--------eeeeeccCCCCCcceEEEE
Confidence 4677888888874 334455555556777776544210 0 0111111123566666777
Q ss_pred ecCCC----CEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEee--
Q 001178 841 LSKND----SYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL-- 913 (1131)
Q Consensus 841 ~s~dg----~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~-- 913 (1131)
|+-|- -++|+++ -|.|+|.|+.++++...+.+|...|..+.+.|++.+++++++.|.+|++|++++..++..+
T Consensus 97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred EEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 76543 3666666 7999999999999999999999999999999988899999999999999999999998886
Q ss_pred -cccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee-------------eecCCCC---------CCCCceE
Q 001178 914 -KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA-------------IQLPAGK---------LPVGETR 970 (1131)
Q Consensus 914 -~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~-------------~~~~~~~---------~~~~v~~ 970 (1131)
.||.+.|.++.|+.+|.+++|+|.|.++++|++...+-..... +..+..+ |...|.+
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 6799999999999999999999999999999998532111100 0000000 1112222
Q ss_pred EEEcCCCcEEEE-EeCCeEEEEeCC-CcccceeeecC----------CCCCCCeEEEEEc--cCCCEEEEEecCCcEEEE
Q 001178 971 VQFHSDQVRLLV-NHETQLAIYDGS-KMECIRQWVPQ----------DVLSSPISSAAYS--CNSQLIYATFTDGSIGVF 1036 (1131)
Q Consensus 971 v~~s~d~~~l~~-~~d~~i~vwd~~-~~~~~~~~~~~----------~~~~~~v~~i~~s--~dg~~l~s~~~dg~i~vw 1036 (1131)
+.|- |.++++ +-++.|..|... -.+.+....+. ......|+-+.|+ +-+++||.|...|.|++|
T Consensus 257 vrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 257 VRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred HHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 2222 345555 457899999872 22222221111 1114456666555 557899999999999999
Q ss_pred ECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEec
Q 001178 1037 DADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1037 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~ 1093 (1131)
|++..+....-...+ +.+....-..+|+- |+.+|+..++|++|.=||.
T Consensus 335 dL~~~ep~~~ttl~~--------s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 335 DLDNNEPPKCTTLTH--------SKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ECCCCCCccCceEEe--------ccccceeeeeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 998776532111111 01112223566766 7889999999999999885
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=4e-18 Score=167.59 Aligned_cols=289 Identities=17% Similarity=0.254 Sum_probs=208.3
Q ss_pred cCCCcEEEEEEec----CCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 345 HQGSSVVSMDFHP----FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 345 ~h~~~V~~~~fsp----dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
.|..+|..++|.+ +...++|+.+ ...+.||......-+. .+|...-..|......++|+-|
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCSWSYD 100 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--------------eeeeccCCCCCcceEEEEEEec
Confidence 3889999999985 2223566665 3488899876533211 0122122357888889999875
Q ss_pred C----CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe--
Q 001178 421 G----NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-- 493 (1131)
Q Consensus 421 g----~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-- 493 (1131)
. -+||.|+.-|.|+|.|+.++++.. .+.+|...|+.+.|.|+..+ +++++|.|.+||+|| .+..++..|
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEecc
Confidence 3 388999999999999999987655 57899999999999999887 899999999999999 888888776
Q ss_pred -cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE----------------------------ecCCCceE
Q 001178 494 -EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD----------------------------YDAPGLWC 544 (1131)
Q Consensus 494 -~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~----------------------------~~~~~~~v 544 (1131)
.+|.+.|.++.|+. ++.+|++++.|..+++|++...+-... ...|...|
T Consensus 177 ~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 47999999999965 557999999999999999884321110 01122222
Q ss_pred EEEEEccCCCEEEEEeecCCCCceEEEEeC-CCCee-------------eEEEecccCCceEE--EEEeCCCCEEEEEEc
Q 001178 545 TTMLYSADGSRLFSCGTSKEGDSHLVEWNE-SEGAL-------------KRTYIGFRKKSAGV--VQFDTTRNRILAAGE 608 (1131)
Q Consensus 545 ~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~-~~~~~-------------~~~~~~~~~~~v~~--~~~s~~~~~l~~~~~ 608 (1131)
.++.|- |+++++-+. ++.|..|.. +-++. +..+.- ....+.- .+|.|-++.|+.|..
T Consensus 255 DCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~-~~c~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDY-PMCDIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred HHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEecc-CccceEEEEEeecHHHHHHhhccC
Confidence 233332 567777655 779999986 21211 122221 1113333 345566789999999
Q ss_pred CCcEEEEEcCCCeEE--EEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 609 DNQIKFWDMDNVNML--TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 609 dg~i~iwd~~~~~~~--~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
.|.+++||++..++. .++........|...+|+.||.+|+...+|++|.-||.
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999999999887653 33333444457899999999999999999999999985
No 165
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=3.4e-18 Score=175.51 Aligned_cols=294 Identities=17% Similarity=0.239 Sum_probs=209.8
Q ss_pred CccceEEEEeecCCc--eEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC
Q 001178 766 SASKVARLLYTNSGI--GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK 843 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~ 843 (1131)
+..+|.+++|.|... .+++|...|.|-+||+.+.+...++.. +...|..+|.++.|+|
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~--------------------~f~~hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY--------------------LFTPHSGPVSGLKFSP 244 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE--------------------EeccCCccccceEecC
Confidence 789999999999765 566666689999999964433333321 1125899999999999
Q ss_pred CCC-EEEEE-eCCeEEEEECCCceeE--EEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeeccee-EEeeccccc
Q 001178 844 NDS-YVMSA-GGGKVSLFNMMNFKVM--TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV-KTKLKGHQK 918 (1131)
Q Consensus 844 dg~-~la~~-~dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~-~~~~~~h~~ 918 (1131)
... .+.+. .||+|++-|++++..- ..+.........+.|+. +...++.|..=|...+||+.++.. ...+.-|..
T Consensus 245 ~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 245 ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred CChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhc
Confidence 553 44444 4999999999876443 33333455677888988 555566677777999999997654 667788999
Q ss_pred CeeEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE-EeCCeEEEEeCC--
Q 001178 919 HITGLAFSTNL-NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGS-- 994 (1131)
Q Consensus 919 ~V~~l~~s~dg-~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~~d~~i~vwd~~-- 994 (1131)
.|++|+++|.. .+|||+|.|++++|||+..-.......+.... +...|.++.|||++..|++ +.|..|+|||..
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~--HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~ 401 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLP--HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCI 401 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccc--ccceeeeeEEcCCCCceEeeccCCceEEeecccc
Confidence 99999999975 56999999999999999874443321222222 3368999999999887776 579999999984
Q ss_pred --CcccceeeecCCC-CCC--CeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEE
Q 001178 995 --KMECIRQWVPQDV-LSS--PISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVV 1069 (1131)
Q Consensus 995 --~~~~~~~~~~~~~-~~~--~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 1069 (1131)
.......+ .|.. +.. ......|.||..++++|-.-..|-|+|-..+++++.+....... | +-..
T Consensus 402 sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~t---------I-~~vn 470 (498)
T KOG4328|consen 402 SAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESST---------I-PSVN 470 (498)
T ss_pred cccCCcccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccc---------c-ccce
Confidence 22222222 2221 112 23456899999999999999999999999999888865443211 1 2246
Q ss_pred EEcCCCCCeEEEEecCCcEEEEec
Q 001178 1070 TSHPQEPNQLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1070 ~~~p~~~~~l~s~~~Dg~v~iW~~ 1093 (1131)
.|||-+..+++-++.-|.|.||--
T Consensus 471 ~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 471 EFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred eecccccceeccCCccceEEEEec
Confidence 899976546666666778888854
No 166
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.4e-18 Score=177.99 Aligned_cols=209 Identities=14% Similarity=0.257 Sum_probs=169.3
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~ 423 (1131)
+|++.|.+++|..+-+.+||+||.|.+|++||+.+|++.. ++..|++.|.+++|+| ...+
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~-------------------s~~~~~k~Vq~l~wh~~~p~~ 301 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS-------------------SITHHGKKVQTLEWHPYEPSV 301 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce-------------------ehhhcCCceeEEEecCCCceE
Confidence 5999999999999988899999999999999999999875 5778999999999999 5779
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~ 501 (1131)
|++|+.|++|.+.|++...+.... + .-.+.|..++|.|.... .++++..||+|+-+| ..++++.++..|.++|.
T Consensus 302 LLsGs~D~~V~l~D~R~~~~s~~~--w-k~~g~VEkv~w~~~se~-~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS 377 (463)
T KOG0270|consen 302 LLSGSYDGTVALKDCRDPSNSGKE--W-KFDGEVEKVAWDPHSEN-SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS 377 (463)
T ss_pred EEeccccceEEeeeccCccccCce--E-EeccceEEEEecCCCce-eEEEecCCceEEeeecCCCCCceeEEEeccCCcc
Confidence 999999999999999853333322 2 23567999999998886 788889999999999 56799999999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe--cCCCceEEEEEEccCCCEEEE-EeecCCCCceEEEEeCCCCe
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--DAPGLWCTTMLYSADGSRLFS-CGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~-~~~~~~~~~~i~iwd~~~~~ 578 (1131)
+++++.... .++++++.|+.|++|++......... ...-+...|.++.|+-.++++ ++. .+.+++||+.+..
T Consensus 378 gl~~n~~~p-~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~----k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 378 GLSVNIQTP-GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGE----KAVLRVWDIFTNS 452 (463)
T ss_pred eEEecCCCC-cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCc----cceEEEeecccCh
Confidence 999986544 58999999999999998765553321 112234677788887665544 443 6689999988766
Q ss_pred eeE
Q 001178 579 LKR 581 (1131)
Q Consensus 579 ~~~ 581 (1131)
.++
T Consensus 453 ~V~ 455 (463)
T KOG0270|consen 453 PVR 455 (463)
T ss_pred hHH
Confidence 543
No 167
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=6.8e-17 Score=168.52 Aligned_cols=491 Identities=13% Similarity=0.131 Sum_probs=296.7
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEE-ec------CCCceEEEEEcCCCc
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF-SY------PNKQLCIVTCGDDKL 479 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~-s~------d~~~~~l~s~s~d~~ 479 (1131)
.|...|.|+.|+.+...+.+++++..+.-||+.+.+ .... .+. ...|....+ -+ .+.. .++.++.||.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~-~~p--~df~pt~~h~~~rs~~~g~~~d-~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA-KLP--DDFVPTDMHLGGRSSGGGKGSD-TLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh-hCC--cccCCccccccccccCCCCCcc-eEEEEcCCce
Confidence 566778899999988877777655555555554432 2111 111 111111111 11 1112 6888999999
Q ss_pred EEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEE
Q 001178 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 480 i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
+.|-+..++.-.....|.+.+.+-.|++ +|.-|++++.||.|++|.- ++-....+.....+|.|++|.|+.+.++.|
T Consensus 87 f~il~k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 87 FVILNKSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEEecccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9999999998889999999999999965 5678999999999999974 333333455566789999999999988887
Q ss_pred eecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEE
Q 001178 560 GTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1131)
. .+.+.+=.+.....+-..+.|.+ .|.++.|++..+.+++|++|-..++||.. |..+..-..|.+ +|++++
T Consensus 164 ~-----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSva 234 (737)
T KOG1524|consen 164 Q-----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSVA 234 (737)
T ss_pred c-----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeeee
Confidence 5 56777777766666666777655 89999999999999999999999999975 445554445554 899999
Q ss_pred EcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcccccc
Q 001178 640 FNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719 (1131)
Q Consensus 640 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~ 719 (1131)
|+|+ ..+++++.+ ++++ +
T Consensus 235 ~npd-~~~~v~S~n-t~R~---~--------------------------------------------------------- 252 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARF---S--------------------------------------------------------- 252 (737)
T ss_pred eccc-cceeeeeee-eeee---c---------------------------------------------------------
Confidence 9999 666666543 3331 0
Q ss_pred CCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeE-EeecC
Q 001178 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKL-WKWNR 798 (1131)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i-w~~~~ 798 (1131)
....+.|..++||+||..++.+...|.+.+ +-++.
T Consensus 253 --------------------------------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq 288 (737)
T KOG1524|consen 253 --------------------------------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQ 288 (737)
T ss_pred --------------------------------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehh
Confidence 013467889999999999999999888755 33332
Q ss_pred CCCCCCCcc--ceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCC
Q 001178 799 TEQNPSGKA--TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPA 876 (1131)
Q Consensus 799 ~~~~~~~~~--~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~ 876 (1131)
.-....++. .....+.+-+..++..-..+ ....+.. ++-.-.+|+++....|++|.-........+.+....
T Consensus 289 ~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE----~p~rv~k--~sL~Y~hLvvaTs~qvyiys~knwntpiiidgre~t 362 (737)
T KOG1524|consen 289 QLVSGNLKATSKSRKSITVRDVATGVQDILE----FPQRVVK--FSLGYGHLVVATSLQVYIYSEKNWNTPIIIDGREDT 362 (737)
T ss_pred hhhhccceeEeeccceEEeehhhhhHHHHhh----Cccceee--eeeceeEEEEEeccEEEEEecCCccCcEEEeccccc
Confidence 211111111 11113445555555443221 2334433 344556788888888999988776655555544433
Q ss_pred eeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec--ccccC-e--eEEEEccCCCEEEEE--eCCCcEEEEEc-CC
Q 001178 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK--GHQKH-I--TGLAFSTNLNILVSS--GSDAQLIFWNT-DT 948 (1131)
Q Consensus 877 i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~--~h~~~-V--~~l~~s~dg~~l~s~--~~Dg~v~lwd~-~~ 948 (1131)
+.-+.-+. ..++ ..+..+|.+|..+.. .....+ +..-+ . ..+....| .|+.- .....+.++|. .+
T Consensus 363 r~lieq~e--k~fl--i~dgsSi~lytyegR-~~~np~~Pg~~~dlL~~rtlsLand--tLaird~ad~kvlhlFd~ist 435 (737)
T KOG1524|consen 363 RNLIEQGE--KYFL--ILDGSSIWLYTYEGR-LHLNPRYPGSQIDLLTWRTLSLAND--TLAIRDNADPKVLHLFDLIST 435 (737)
T ss_pred hhHhhhhh--hheE--EecCcEEEEEEecCc-eecCCCCCCcccccccceeeecccc--eEEeecCCCCeeEEeccCCCC
Confidence 32222221 1222 234456777765432 222211 11100 0 12222222 33332 22345678887 55
Q ss_pred CceeeeeeeecCCCCCCCCceEEEE----cCCCcEEEE-EeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCE
Q 001178 949 WEKRKSIAIQLPAGKLPVGETRVQF----HSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQL 1023 (1131)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~v~~v~~----s~d~~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~ 1023 (1131)
++...--. .. .+...+..++. .++.+.++. -..+.+.|-.+++...-..+... ...|..++|+... -
T Consensus 436 gk~qgDgk--~L--~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki---GTmVhtLawndtt-N 507 (737)
T KOG1524|consen 436 GKRQGDGK--SL--RHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI---GTMVHTLAWNDTT-N 507 (737)
T ss_pred CcccCCcc--cc--chhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhh---hhhhhhhhhcccc-c
Confidence 44211110 00 01122333333 233444444 33566666666553333333222 4678889998544 4
Q ss_pred EEEEecCCcEEEEECCCC
Q 001178 1024 IYATFTDGSIGVFDADSL 1041 (1131)
Q Consensus 1024 l~s~~~dg~i~vwd~~~~ 1041 (1131)
+++|-.|+.+.||-+...
T Consensus 508 iLcglqDt~fsVWy~pn~ 525 (737)
T KOG1524|consen 508 ILCGLQDTCFSVWYYPNE 525 (737)
T ss_pred eeeeeccceEEEEEcCCc
Confidence 677888999999988754
No 168
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=9.2e-18 Score=164.47 Aligned_cols=228 Identities=13% Similarity=0.153 Sum_probs=170.8
Q ss_pred cCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeE
Q 001178 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKV 856 (1131)
Q Consensus 777 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i 856 (1131)
|+..++++.+.+.-|.+||.-+++...... .+|.. ..-....+++|+|||.+|.+|...+|
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~--------~ydh~-----------de~taAhsL~Fs~DGeqlfaGykrci 181 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYR--------AYDHQ-----------DEYTAAHSLQFSPDGEQLFAGYKRCI 181 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchh--------hhhhH-----------HhhhhheeEEecCCCCeEeecccceE
Confidence 566777788888888888765544332211 11110 01223468999999999999999999
Q ss_pred EEEEC-CCceeEE---EE----eCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccC
Q 001178 857 SLFNM-MNFKVMT---TF----MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN 928 (1131)
Q Consensus 857 ~vwd~-~~~~~~~---~~----~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 928 (1131)
++||+ ..|..-. ++ .+..+.|.+++|+|.+...+|+|+....+-||.-....++..+-+|.+.|+.+.|.+|
T Consensus 182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed 261 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED 261 (406)
T ss_pred EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC
Confidence 99998 4443211 11 1235679999999988889999999999999999999999999999999999999999
Q ss_pred CCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEE--EEcCCCcEEEEE-eCCeEEEEeCCC-cccceeee
Q 001178 929 LNILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRV--QFHSDQVRLLVN-HETQLAIYDGSK-MECIRQWV 1003 (1131)
Q Consensus 929 g~~l~s~~~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v--~~s~d~~~l~~~-~d~~i~vwd~~~-~~~~~~~~ 1003 (1131)
|+.|.+|.. |-.|..||+..... ++-....+....-..| ...|++++|++| .+|.|++||+++ +..+..+.
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~ 337 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG 337 (406)
T ss_pred cCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc
Confidence 999999987 67899999987432 2222223322233344 446899999998 699999999998 66666666
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecC
Q 001178 1004 PQDVLSSPISSAAYSCNSQLIYATFTD 1030 (1131)
Q Consensus 1004 ~~~~~~~~v~~i~~s~dg~~l~s~~~d 1030 (1131)
.+ +..++.+++.|--.++++++..
T Consensus 338 ~~---sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 338 NY---SDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cc---cccccceecCcccceeeeccCc
Confidence 65 7899999999998888887743
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=2.6e-17 Score=166.78 Aligned_cols=298 Identities=17% Similarity=0.226 Sum_probs=219.9
Q ss_pred ccceEEEEeecCCc-eEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 767 ASKVARLLYTNSGI-GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
..++..+.|.++.. .+++++.|..|++|.++.+.....+ ..+........|...|+++.|+|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeecccCCcceeEEEEEcCCc
Confidence 46778888888777 9999999999999998775443221 1122222334799999999999999
Q ss_pred CEEEEEe-CCeEEEEECC--------C--------ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce
Q 001178 846 SYVMSAG-GGKVSLFNMM--------N--------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~ 908 (1131)
..||+|+ +|+|.+|-.. + +...+.+.+|...|..++|+| +++++++|+-|..+++||+..|.
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccce
Confidence 9999999 5889999765 2 344566778999999999999 99999999999999999999999
Q ss_pred eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee-----eecC------------CCCCCCCceEE
Q 001178 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA-----IQLP------------AGKLPVGETRV 971 (1131)
Q Consensus 909 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~-----~~~~------------~~~~~~~v~~v 971 (1131)
....+.+|..-|..++|.|-++++++-+.|...+.+.+.......... .... +.........+
T Consensus 157 l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 999999999999999999999999999999877777766533222111 0000 01111345678
Q ss_pred EEcCCCcEEEEEe-----CCe-----EEEEeCCCc-ccceeeecCCCCCCCeEEEEEcc---------C--------CCE
Q 001178 972 QFHSDQVRLLVNH-----ETQ-----LAIYDGSKM-ECIRQWVPQDVLSSPISSAAYSC---------N--------SQL 1023 (1131)
Q Consensus 972 ~~s~d~~~l~~~~-----d~~-----i~vwd~~~~-~~~~~~~~~~~~~~~v~~i~~s~---------d--------g~~ 1023 (1131)
+|+|||.+|++.. ++. .++|+-... +.+..+... ..+...+.|+| . -++
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~---~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl 313 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP---KKPALAVRFSPVYYELRPLSSEKFLFVLPYRL 313 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC---CcceEEEEeeeeEEEeccccccccccccccce
Confidence 9999999999731 232 456655432 233333333 56777777776 1 123
Q ss_pred EEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1024 IYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1024 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
+++....+.|+|||.++...++.....+|.... +++|++ |+..|+..+.||-..+-.+..
T Consensus 314 vfaiAt~~svyvydtq~~~P~~~v~nihy~~iT-----------Diaws~-dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 314 VFAIATKNSVYVYDTQTLEPLAVVDNIHYSAIT-----------DIAWSD-DGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred EEEEeecceEEEeccccccceEEEeeeeeeeec-----------ceeecC-CCcEEEEeccCCceEEEEEcc
Confidence 344445789999999999999998887766533 699999 788999999999766655543
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=1.1e-17 Score=163.95 Aligned_cols=287 Identities=15% Similarity=0.206 Sum_probs=206.9
Q ss_pred EEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc-------CCCC
Q 001178 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS-------PDGN 422 (1131)
Q Consensus 350 V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s-------pdg~ 422 (1131)
...+.|||||.. +.+-+.|..+.+|++-..-......... ....+..+--.....|...+|- |+..
T Consensus 52 ~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~~------~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGPL------NFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCcc------ccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 346799999985 6777889999999985321111000000 0000111111234567777775 6778
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCC---eeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeE--Ee--
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGG---VNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLF--QF-- 493 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~---V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~--~~-- 493 (1131)
++|+.+.+.-|++||.-+|+... ......|... ..+++|+|||. .|+ ++..+.|+++| ..|+... ..
T Consensus 125 l~a~ssr~~PIh~wdaftG~lra-Sy~~ydh~de~taAhsL~Fs~DGe--qlf-aGykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRA-SYRAYDHQDEYTAAHSLQFSPDGE--QLF-AGYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeecccccccc-chhhhhhHHhhhhheeEEecCCCC--eEe-ecccceEEEeeccCCCCCCcchhhhh
Confidence 99999999999999999988433 2233345543 46899999999 454 45578999999 4454321 11
Q ss_pred ---cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEE
Q 001178 494 ---EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1131)
Q Consensus 494 ---~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 570 (1131)
.+..+-+.+++|+|.. ...++.++.-.++-++.-........+.+|.+.|+.+.|.++|+.|++++. .+..|-
T Consensus 201 ~~k~gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCCC-CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEE
Confidence 2346778899998854 468999999999999999999999999999999999999999999999875 477899
Q ss_pred EEeCCC-CeeeEEEecccCCceEEE--EEeCCCCEEEEEEcCCcEEEEEcCC-CeEEEEEeccCCCCCcceEEEcCCCCE
Q 001178 571 EWNESE-GALKRTYIGFRKKSAGVV--QFDTTRNRILAAGEDNQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNL 646 (1131)
Q Consensus 571 iwd~~~-~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~v~~sp~~~~ 646 (1131)
.||++. +.++..+..|....-..+ ...|++++|++|+.||.|++||+.+ +..+..+..+.. .++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccce
Confidence 999986 445556665544333333 4467889999999999999999998 666666655444 7899999999888
Q ss_pred EEEEECC
Q 001178 647 LVVTTAD 653 (1131)
Q Consensus 647 l~~~~~d 653 (1131)
+++++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8887654
No 171
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=8.2e-18 Score=173.64 Aligned_cols=275 Identities=11% Similarity=0.140 Sum_probs=202.0
Q ss_pred EEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEecCC
Q 001178 363 LVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGS 441 (1131)
Q Consensus 363 lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~-~las~~~d~~i~vwd~~~~ 441 (1131)
+|+++ .+++|||....+..... ......-.+.++.|+.... .+|+.+.|..|++|.-...
T Consensus 7 ~aS~g--d~~kl~D~s~~~~~~~~-----------------~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~ 67 (673)
T KOG4378|consen 7 VASTG--DKTKLSDFSDLETKSEY-----------------VHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK 67 (673)
T ss_pred eeccC--CceEEeecccccCcccc-----------------ccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC
Confidence 44443 48999998765543210 0111223499999998764 3334466788999975443
Q ss_pred Cc-cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEec
Q 001178 442 ND-LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV 519 (1131)
Q Consensus 442 ~~-~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 519 (1131)
.. +.......+. .-.|++...... ++++||..+.|+||| ....+.+.+++|...|+++.++..+ .+|++++.
T Consensus 68 ~~~Vp~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~ 141 (673)
T KOG4378|consen 68 TPEVPRVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSD 141 (673)
T ss_pred CCccceeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEecc
Confidence 11 1111122222 233444433334 899999999999999 5455567788999999999986543 79999999
Q ss_pred CCeEEEEeCCCCceeEEecCC-CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC
Q 001178 520 DGKIKAWLYDNVGSRVDYDAP-GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 520 dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
.|.|.+..+.++.....+... +..|.-+.|++..++++.... .+|.|.+||.....++..+...|..+...+||+|
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsp 218 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSP 218 (673)
T ss_pred CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecC
Confidence 999999999888777777655 456779999999888766543 2899999999988888777766777888899999
Q ss_pred CCC-EEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhh
Q 001178 599 TRN-RILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRAL 668 (1131)
Q Consensus 599 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~ 668 (1131)
... .|++.+.|..|++||....+....+.... +...++|+++|.+|+.|...|.|..||+......+
T Consensus 219 sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 219 SNEALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred CccceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 764 77789999999999999877766665433 68999999999999999999999999987654333
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=1.1e-17 Score=168.21 Aligned_cols=248 Identities=16% Similarity=0.225 Sum_probs=187.5
Q ss_pred CEEEEEEcC-----CCCEEEEE---eCCCeEEEEEe-cCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 411 SVSRVAWSP-----DGNFIGVA---FTKHLIHLYTY-QGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 411 ~V~~~~~sp-----dg~~las~---~~d~~i~vwd~-~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
.|+..+|.. +.++||.. +..|...|--+ +.|+.-.....+.||+++|..++|+|-+.+ .++|||.|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 455555543 45666653 22233333332 234333333456899999999999997766 899999999999
Q ss_pred EEe-CCC-------ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCC
Q 001178 482 VWD-LSG-------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG 553 (1131)
Q Consensus 482 iwd-~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g 553 (1131)
||. ..+ +.+..+.+|...|-.+.|+|... +.|++++.|.+|.+|++.+++....+. |...|.++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 999 322 34678899999999999999765 789999999999999999999999887 88899999999999
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE---cCCcEEEEEcCCCeEEEEEeccC
Q 001178 554 SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG---EDNQIKFWDMDNVNMLTSTEAEG 630 (1131)
Q Consensus 554 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~ 630 (1131)
.++++++. |..|++||.++++.+..-.+|.+..-..+-|-.++..+-+|- .+..+-+||..+.+.-..+..-.
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD 261 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD 261 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec
Confidence 99999997 899999999999999888888776666677888888444432 47889999987654322222222
Q ss_pred CCCCcceEEEcCCCCEEEEEE-CCCcEEEEecCCCc
Q 001178 631 GLPSLPRLRFNKEGNLLVVTT-ADQGIKILANADGL 665 (1131)
Q Consensus 631 ~~~~i~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~ 665 (1131)
....|.---|.+|.++++.++ .|+.|+.|.+.+..
T Consensus 262 tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 262 TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 222466666788888876555 59999999997763
No 173
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.3e-16 Score=169.63 Aligned_cols=633 Identities=12% Similarity=0.123 Sum_probs=363.6
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC-----
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD----- 420 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd----- 420 (1131)
|...-.++.|+|.| ++|-|+. ..|.|-|..+-+.+. .+.-|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence 44457789999999 6888874 588999988877765 46678999999999873
Q ss_pred -C------CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEec---CCCceEEEEEcCCCcEEEEe-CCCce
Q 001178 421 -G------NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY---PNKQLCIVTCGDDKLIRVWD-LSGRK 489 (1131)
Q Consensus 421 -g------~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~---d~~~~~l~s~s~d~~i~iwd-~~~~~ 489 (1131)
+ -+||++...|.|.+||...+.... .+..|..+|..++|-+ +.+. +|+.-....++.+|+ .+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1 267888888999999998876443 5778899999999976 3434 566666778999999 99999
Q ss_pred eEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC------ceeEEecCC-Cc--------------------
Q 001178 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV------GSRVDYDAP-GL-------------------- 542 (1131)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~------~~~~~~~~~-~~-------------------- 542 (1131)
..+.........|+.+.|-...++.+ -+..|.+.+-+.-.. ...+.+... ..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~-l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCV-LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEE-EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 88887767777888887765544444 444555555543211 111111111 00
Q ss_pred -----eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCC--CEEEEEEcCCcEEEE
Q 001178 543 -----WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR--NRILAAGEDNQIKFW 615 (1131)
Q Consensus 543 -----~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw 615 (1131)
....++|+|.-+.++.... ...+.++|++-..++....-..+ .+.-+.+-|++ ..++++..||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 0123566776555554444 66799999988887777665444 55567777766 589999999999999
Q ss_pred EcCC----------------CeEEEEEeccCCCCCcceEEEcCC-CCEEEEEECCCcEEEEecCCCchhhhhhhcccccc
Q 001178 616 DMDN----------------VNMLTSTEAEGGLPSLPRLRFNKE-GNLLVVTTADQGIKILANADGLRALRAIETRAYET 678 (1131)
Q Consensus 616 d~~~----------------~~~~~~~~~~~~~~~i~~v~~sp~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 678 (1131)
-.+. ++....+..-....+ ......|. ...++.--.+|.+.+|.+.++........+.....
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp-~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRP-VIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhccc-ceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 7654 222222222111111 22223343 44555666788888998876521111000000000
Q ss_pred ccccc--cccccCccceeccccccc--ccccccCCCCCCcccccc--CCCccccCCCCceeccccCCCCcceeeecccCC
Q 001178 679 SRAST--EMKVPGSAVVTTITPVLS--KAERVDRSSPARPSTILN--GADSAARGIEKPRNLEDISDKTKPWELTEIVDP 752 (1131)
Q Consensus 679 ~~~~~--~~~~~~~~~~~~~sp~~~--~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~ 752 (1131)
..... .....+.....++|-+.+ ....+.+..+...-.... .+.......-..++.|...|+|.++++....-.
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~ 460 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVA 460 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhh
Confidence 00000 000011111112222210 000011111111000000 011111112234678999999999998764321
Q ss_pred ceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCccccc-CCCCC
Q 001178 753 LQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN-DVPEN 831 (1131)
Q Consensus 753 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~ 831 (1131)
.. ...|...|.++.|......+-.+.+. .. +........+.+-++.+|.-... .+++.
T Consensus 461 ~~--------fsvht~~VkgleW~g~sslvSfsys~-~n------------~~sg~vrN~l~vtdLrtGlsk~fR~l~~~ 519 (1062)
T KOG1912|consen 461 AS--------FSVHTSLVKGLEWLGNSSLVSFSYSH-VN------------SASGGVRNDLVVTDLRTGLSKRFRGLQKP 519 (1062)
T ss_pred hh--------hcccccceeeeeeccceeEEEeeecc-cc------------ccccceeeeEEEEEcccccccccccCCCC
Confidence 11 13488889999988766644443331 00 00111122345566677764432 23445
Q ss_pred CCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEe-CC---------------CCcEEEEEe
Q 001178 832 AEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFH-PQ---------------DNNIIAIGM 894 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------~~~~la~g~ 894 (1131)
.+.+|+.+..|.-|+|++..- +.-+.+||+++..+++.....-.-++.+.|+ |. ..+..+..+
T Consensus 520 despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds 599 (1062)
T KOG1912|consen 520 DESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDS 599 (1062)
T ss_pred CcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeecc
Confidence 688999999999999999998 7779999999888777665544558899998 31 112233333
Q ss_pred CCCcEEEEEeec-------cee-EEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCC
Q 001178 895 EDSTIQIYNVRV-------DEV-KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPV 966 (1131)
Q Consensus 895 ~dg~I~iwd~~~-------~~~-~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~ 966 (1131)
+..+++.+.. +.. ....+...-.+..++|- +..|+.|..+|.+.+||+.....+.. ...+.. -.
T Consensus 600 --~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg~--~d~p~~--ra 671 (1062)
T KOG1912|consen 600 --VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRGV--RDSPDP--RA 671 (1062)
T ss_pred --ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccCc--cCCCCc--hh
Confidence 2233333221 111 11111112234446664 66999999999999999876432221 111111 02
Q ss_pred CceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCce
Q 001178 967 GETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL 1043 (1131)
Q Consensus 967 ~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1043 (1131)
......+-|....+++-....+-+||.+....+..+.+... +..+..+.+......++. .|+.+++-.+.....
T Consensus 672 ~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~ds-sfrlldvdlc~~~~~~l~--~d~~~Rf~~m~mks~ 745 (1062)
T KOG1912|consen 672 HSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDS-SFRLLDVDLCEKSPLVLP--NDNKERFRVMPMKSP 745 (1062)
T ss_pred hheecccCCCCceEEEEecCcceecccccceeeeeeccCCc-ceEEEEEEecccCceecC--CCCceeEEeccccCC
Confidence 22233344544455566667789999998888888755421 344455555443333333 455777776665443
No 174
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2e-18 Score=197.46 Aligned_cols=276 Identities=13% Similarity=0.199 Sum_probs=210.8
Q ss_pred ccCCCCCcccccCCCccc----ceeeeccCCCcEEEEEEecCCCc---EEEEEcCCCeEEEEECCCC---ccccccccee
Q 001178 321 TYPVPSQQATWSLDDLPR----AVACTMHQGSSVVSMDFHPFHHT---LLVVGCGDGEITLWDVGLR---ERLVSKPFKI 390 (1131)
Q Consensus 321 ~~s~~~~~~~~~~~~~~~----~~~~~~~h~~~V~~~~fspdg~~---llasg~~dg~v~iwd~~~~---~~~~~~~~~~ 390 (1131)
.||.....-+|..+.... ..+..+.-..+-+.++|.+.|.. ++|.|..||.|.+||...- ....
T Consensus 34 sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~------ 107 (1049)
T KOG0307|consen 34 SFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE------ 107 (1049)
T ss_pred ccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchH------
Confidence 344444444444444322 34445566778999999998876 6999999999999998752 1110
Q ss_pred ecccccccceeceeccCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCCccceeeee--ecCcCCeeEEEEecCCC
Q 001178 391 WDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEI--DAHVGGVNDLAFSYPNK 467 (1131)
Q Consensus 391 ~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~--~~h~~~V~~l~~s~d~~ 467 (1131)
.......|.+.|..+.|++.+. +||+|+.||.|.|||+..-+.-. .. ..-...|.+++|+..-.
T Consensus 108 ----------~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~---~~~~~~~~~eI~~lsWNrkvq 174 (1049)
T KOG0307|consen 108 ----------VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF---TPGSQAPPSEIKCLSWNRKVS 174 (1049)
T ss_pred ----------HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC---CCCCCCCcccceEeccchhhh
Confidence 1114668999999999999765 99999999999999998744221 22 22456799999998877
Q ss_pred ceEEEEEcCCCcEEEEe-CCCceeEEecCCcc--CeEEEeecccCCccEEEEEecCC--eEEEEeCCCCcee-EEecCCC
Q 001178 468 QLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA--PVYSVCPHQKENIHFIFSTAVDG--KIKAWLYDNVGSR-VDYDAPG 541 (1131)
Q Consensus 468 ~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~dg--~i~~wd~~~~~~~-~~~~~~~ 541 (1131)
+ .|++++.+|.+.||| ...+.+..+..|.+ .+..+.|+|+...+++++..+|+ .|.+||++..... ..+..|.
T Consensus 175 h-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~ 253 (1049)
T KOG0307|consen 175 H-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQ 253 (1049)
T ss_pred H-HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccc
Confidence 6 799999999999999 55667777766654 47789999977644444444443 6999999876544 4567899
Q ss_pred ceEEEEEEccCC-CEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCC
Q 001178 542 LWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 542 ~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~ 619 (1131)
..|.++.|++.+ ++|++++. |++|.+|+.++++.+..+.. .+..+..+.|+|... .+++++.||.|.|+.+..
T Consensus 254 ~GilslsWc~~D~~lllSsgk----D~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGK----DNRIICWNPNTGEVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cceeeeccCCCCchhhhcccC----CCCeeEecCCCceEeeecCC-CCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 999999999976 88888887 99999999999999999887 444788899999876 778899999999999876
Q ss_pred Ce
Q 001178 620 VN 621 (1131)
Q Consensus 620 ~~ 621 (1131)
..
T Consensus 329 ~~ 330 (1049)
T KOG0307|consen 329 TD 330 (1049)
T ss_pred CC
Confidence 54
No 175
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=1.5e-18 Score=190.06 Aligned_cols=279 Identities=18% Similarity=0.274 Sum_probs=213.6
Q ss_pred eeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 342 ~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
+.++|-..|+|+.|...|++ +++|+.|..|+||..+++.++. ...||.+.|+.++.+.+.
T Consensus 185 rLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lA-------------------s~rGhs~ditdlavs~~n 244 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLA-------------------SCRGHSGDITDLAVSSNN 244 (1113)
T ss_pred HHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhc-------------------cCCCCccccchhccchhh
Confidence 35679999999999999985 9999999999999999999886 477999999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEe----cC-C
Q 001178 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF----EG-H 496 (1131)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~----~~-h 496 (1131)
.++|+++.|..|++|.+.++..+. .+.||++.|++++|+|- .+.+.||++++||..-..+... .. .
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCccc
Confidence 999999999999999999988665 68899999999999984 4788999999999442221111 11 1
Q ss_pred ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCC-EEEEEeecCCCCceEEEEeCC
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS-RLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
..-+.++.| ..++..++|++.|+.-..|...... .+...+.-+.++.|-. +.+++-. +..+++|++.
T Consensus 316 ~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~----~~~~~vwnl~ 383 (1113)
T KOG0644|consen 316 KDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARN----DHRLCVWNLY 383 (1113)
T ss_pred ccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeee----eeEeeeeecc
Confidence 233444444 3455678899999988888654211 1111122222222322 2333322 7789999999
Q ss_pred CCeeeEEEecccCCceEEEEEeCCCCEE-EEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCC
Q 001178 576 EGALKRTYIGFRKKSAGVVQFDTTRNRI-LAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg 654 (1131)
+|.+.+...+|.. .+..+.++|-...+ .+++.||...|||+..|.+++..... + ..+....|+++|..++....-|
T Consensus 384 ~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~hg 460 (1113)
T KOG0644|consen 384 TGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDHG 460 (1113)
T ss_pred cchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCCC
Confidence 9999999888776 88899999977654 46899999999999999888776533 2 2678889999999999888889
Q ss_pred cEEEEecCCC
Q 001178 655 GIKILANADG 664 (1131)
Q Consensus 655 ~i~iw~~~~~ 664 (1131)
.+.|.....+
T Consensus 461 ql~i~g~gqs 470 (1113)
T KOG0644|consen 461 QLYILGTGQS 470 (1113)
T ss_pred ceEEeccCCC
Confidence 9988876443
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=6.4e-17 Score=162.90 Aligned_cols=233 Identities=14% Similarity=0.246 Sum_probs=182.8
Q ss_pred eccCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCCc----cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC
Q 001178 404 IVKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 478 (1131)
...||+++|..++|+| +...||+||.|.+|.||.+..+.. ......+.||...|--++|+|.-.+ .|+|++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 5789999999999999 677999999999999999865432 2345678999999999999998877 799999999
Q ss_pred cEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCc-eEEEEEEccCCCEE
Q 001178 479 LIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-WCTTMLYSADGSRL 556 (1131)
Q Consensus 479 ~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l 556 (1131)
+|.+|| .+|+.+.++. |...|.+++|+ .+|.++++++.|+.||+||.++++....-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 999999 8999888887 99999999995 5678999999999999999999988887666654 456677888998 7
Q ss_pred EEEeecCCCCceEEEEeCCCCe---eeEEEecccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeE-EEEEeccCC
Q 001178 557 FSCGTSKEGDSHLVEWNESEGA---LKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNM-LTSTEAEGG 631 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~ 631 (1131)
++.+.++-.+.++-+||..+-. ....+. ....|.--.|.++.+.++.++ .|+.|+.|.+....+ ++.+..-..
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec--cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 7777777789999999976533 233333 233566667888888777654 699999999987653 233322222
Q ss_pred CCCcceEEEcCC
Q 001178 632 LPSLPRLRFNKE 643 (1131)
Q Consensus 632 ~~~i~~v~~sp~ 643 (1131)
..+-..+.|-|.
T Consensus 309 ~epQRG~g~mPK 320 (472)
T KOG0303|consen 309 KEPQRGMGFMPK 320 (472)
T ss_pred CCcccccccccc
Confidence 223455666664
No 177
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=2.2e-16 Score=164.79 Aligned_cols=273 Identities=15% Similarity=0.197 Sum_probs=190.0
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.|...|.||.|+.+.. ++.++ .|..+.+|.-.+....... .+. ...++. ..|-++-. ..=-.....|
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~~-----~~p--~df~pt---~~h~~~rs-~~~g~~~d~~ 78 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEVA-----KLP--DDFVPT---DMHLGGRS-SGGGKGSDTL 78 (737)
T ss_pred ccceeEEeecccccce-EEEec-cCceEEEeecccchhhhhh-----hCC--cccCCc---cccccccc-cCCCCCcceE
Confidence 4777889999999886 45544 5666666654333222100 000 000000 01100000 0000123478
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEe
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVC 504 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~ 504 (1131)
+.++.||.+.+-+-... ......+|.+.|.+-.|+|||. -|+|+|.||.|++|..+|-...++.....+|.|++
T Consensus 79 ~i~s~DGkf~il~k~~r----VE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSAR----VERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred EEEcCCceEEEecccch----hhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEeccchHHHHHhhcCceeEEEE
Confidence 88899999888875442 1224789999999999999999 79999999999999988877777777788999999
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEe
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 584 (1131)
|.|+.+ +.+++.+ +.+.+=-+...........|.+-|.++.|++..+.+++++. |-..++||.. |+.+..-.
T Consensus 153 W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~S~ 224 (737)
T KOG1524|consen 153 WAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFTSA 224 (737)
T ss_pred ECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-CcccccCC
Confidence 987654 4555544 45566566667778888999999999999999999999987 9999999965 55555544
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 585 GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
. +..+|++++|.|+ ..++.++. +++++=. ...+.|..++||+||..+++|+..|.+.+=.
T Consensus 225 ~-~ey~ITSva~npd-~~~~v~S~-nt~R~~~-------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 225 A-EEYAITSVAFNPE-KDYLLWSY-NTARFSS-------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred h-hccceeeeeeccc-cceeeeee-eeeeecC-------------CCccceEEEEEcCCCceeeccccCceEEEee
Confidence 4 3448999999999 55555543 3444211 1233789999999999999999999876643
No 178
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.8e-16 Score=167.27 Aligned_cols=539 Identities=13% Similarity=0.152 Sum_probs=310.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC----------CCceEEEEEcCCCc
Q 001178 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP----------NKQLCIVTCGDDKL 479 (1131)
Q Consensus 410 ~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d----------~~~~~l~s~s~d~~ 479 (1131)
..-.++.|+|.| +||.|+. ..|.|-|..+-+.+. .+.-|...|+.+.|.|- ..+++++++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346788999887 6777765 468888987765444 67789999999999873 23467888989999
Q ss_pred EEEEe-CCCceeEEecCCccCeEEEeecccCCc--cEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc-CCCE
Q 001178 480 IRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENI--HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSR 555 (1131)
Q Consensus 480 i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~ 555 (1131)
|.+|| ..+..+..+..|..++..++|.+..+. ..|++-....++.+|+.++++.............++.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 99999 888888899999999999999876543 4677778889999999999999988877777777888888 4444
Q ss_pred EEEEeecCCCCceEEEEeCC-------CCeeeEEEecccC-----------C-----c--------eEEEEEeCCCCEEE
Q 001178 556 LFSCGTSKEGDSHLVEWNES-------EGALKRTYIGFRK-----------K-----S--------AGVVQFDTTRNRIL 604 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~-----------~-----~--------v~~~~~s~~~~~l~ 604 (1131)
+..-+. .|.+.+-+.- .|+..+.-..|.+ . + ....+|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 444432 4444443321 1222222111111 0 0 01156788777677
Q ss_pred EEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC--CCCEEEEEECCCcEEEEecCCCchhhhhhhcccccccccc
Q 001178 605 AAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK--EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRAS 682 (1131)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1131)
.......+.++|++-..++.....+.+. +.-+.+-| ....|++.-.||.+.+|--......+..-.
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~---------- 314 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPN---------- 314 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccc----------
Confidence 7777888999999999999888877663 44455555 456789999999999997543211111100
Q ss_pred ccccccCccceecccccccccccccCC-CCCCccccccCCCccccCC-CCceeccccCCCCcceeeecccCCceeEEEEc
Q 001178 683 TEMKVPGSAVVTTITPVLSKAERVDRS-SPARPSTILNGADSAARGI-EKPRNLEDISDKTKPWELTEIVDPLQCRVVAM 760 (1131)
Q Consensus 683 ~~~~~~~~~~~~~~sp~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~-~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~ 760 (1131)
+.++-+.+....+.+. ....+.. ....+. ...+..--.+|...+|++.+..-
T Consensus 315 -----------~~l~~dl~~Q~~~vr~m~~~rp~~------~~~cPs~~sa~avl~s~g~~~~w~l~~~ri--------- 368 (1062)
T KOG1912|consen 315 -----------ASLSMDLGEQVHVVRPMEEFRPVI------GASCPSTPSALAVLYSSGDSTFWQLSNGRI--------- 368 (1062)
T ss_pred -----------hhhccccccceEEEeechhcccce------eecCCCChhhhhhhhhcchhHHHhhhcCCc---------
Confidence 0111111111000000 0000000 000000 11122222334555555542100
Q ss_pred CCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEE
Q 001178 761 PESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVA 840 (1131)
Q Consensus 761 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~ 840 (1131)
|... ...+++.-.-+ -..+....+... .+......++|.....+..
T Consensus 369 -----~~~~--~s~~iel~~pf--~f~~~~~~v~k~-------------------------~l~~LS~dg~h~sGs~~~~ 414 (1062)
T KOG1912|consen 369 -----HLDY--RSSSIELVLPF--DFNLSTKLVGKT-------------------------SLISLSDDGSHSSGSTCVR 414 (1062)
T ss_pred -----Cccc--ccccccccccc--cccCceeehhhc-------------------------cccchhhcCCCCCCceeee
Confidence 0000 00000000000 000000000000 0000011112333333322
Q ss_pred ec-----------CCCC-------EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEE--------
Q 001178 841 LS-----------KNDS-------YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIG-------- 893 (1131)
Q Consensus 841 ~s-----------~dg~-------~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g-------- 893 (1131)
.. |.|+ ++|.|. .|+|.++|+.++...+.+..|.+.|.++.|.. ...++-.+
T Consensus 415 ~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~s 493 (1062)
T KOG1912|consen 415 MRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSAS 493 (1062)
T ss_pred cccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeeccccccc
Confidence 22 2222 566776 79999999999999999999999999999986 44444322
Q ss_pred -eCCCcEEEEEeecceeEE--ee-cccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCce
Q 001178 894 -MEDSTIQIYNVRVDEVKT--KL-KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGET 969 (1131)
Q Consensus 894 -~~dg~I~iwd~~~~~~~~--~~-~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~ 969 (1131)
..-+.+.+-|+.+|..+. .+ +....+|+.+..|.-|+||+..-.|.-+.+||+++......+.... .-++
T Consensus 494 g~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~------P~it 567 (1062)
T KOG1912|consen 494 GGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLAL------PLIT 567 (1062)
T ss_pred cceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcC------CcEE
Confidence 222457778888875332 12 2356789999999999999999999999999998754333222211 2366
Q ss_pred EEEEc-CCCcEEE---------------EEeCCeEEEEeCCC-------cccceeeecCCCCCCCeEEEEEccCCCEEEE
Q 001178 970 RVQFH-SDQVRLL---------------VNHETQLAIYDGSK-------MECIRQWVPQDVLSSPISSAAYSCNSQLIYA 1026 (1131)
Q Consensus 970 ~v~~s-~d~~~l~---------------~~~d~~i~vwd~~~-------~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s 1026 (1131)
.+.|+ |.-.-+. +......+++.+.. +.....-..+ ....+..|+| .+..|+.
T Consensus 568 ~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~es--fafal~~mAw--k~d~lv~ 643 (1062)
T KOG1912|consen 568 VLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWES--FAFALCAMAW--KDDILVV 643 (1062)
T ss_pred EEeecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHH--HHHHHHhhhc--cCCeeEe
Confidence 77776 3222111 11112333333321 1111110000 0223334555 4668999
Q ss_pred EecCCcEEEEECCC
Q 001178 1027 TFTDGSIGVFDADS 1040 (1131)
Q Consensus 1027 ~~~dg~i~vwd~~~ 1040 (1131)
|+.+|.+.+||+..
T Consensus 644 GD~~GNl~~WDlg~ 657 (1062)
T KOG1912|consen 644 GDVEGNLVVWDLGR 657 (1062)
T ss_pred ecccCceeEEeccc
Confidence 99999999999753
No 179
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.1e-17 Score=173.12 Aligned_cols=293 Identities=17% Similarity=0.251 Sum_probs=226.9
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC--CCC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~ 422 (1131)
.|.+.|+.|.|...|. +|++|+.|..|.+||+..++.... ...||...|..-.|-| +.+
T Consensus 140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCCCc
Confidence 3999999999999998 699999999999999998887653 4569999999999988 456
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEE---ecCCcc
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQ---FEGHEA 498 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~---~~~h~~ 498 (1131)
.+++++.||.|++=.+...........+..|.++|.-++.-|+..+ -|.|++.|+.+.-.| ..+..... -..+..
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCc
Confidence 8999999999999887665555545567789999999999999887 799999999999999 44433222 222333
Q ss_pred ---CeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee------EEec------CCCceEEEEEEccCCCEEEEEeecC
Q 001178 499 ---PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR------VDYD------APGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 499 ---~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~------~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
....++.+|... ..+++++.|..+++||.+..... ..+. .....|++++|+.++.-|++.-.
T Consensus 280 ~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-- 356 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-- 356 (559)
T ss_pred cceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec--
Confidence 456777776543 58999999999999997653322 1111 22336999999966655554443
Q ss_pred CCCceEEEEeCCC--C----------eeeE-EEecccCC-ceEEEE-EeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec
Q 001178 564 EGDSHLVEWNESE--G----------ALKR-TYIGFRKK-SAGVVQ-FDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 564 ~~~~~i~iwd~~~--~----------~~~~-~~~~~~~~-~v~~~~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
+-.|+++.... | ..++ .|++|.+. .|..+- |.|...++++|++-|.|.||+-.+++.+..+..
T Consensus 357 --De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 357 --DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred --ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence 77888885432 2 2233 37888664 344443 678889999999999999999999999998887
Q ss_pred cCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 629 EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 629 ~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
..+ -|+|+.-+|.-.+||+.+-|..|+||...+.
T Consensus 435 Dr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 435 DRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 766 7999999999999999999999999987443
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.3e-17 Score=176.00 Aligned_cols=251 Identities=16% Similarity=0.183 Sum_probs=188.0
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecC-----CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG-----SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~-----~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 478 (1131)
++..|.+.|..++|.|-...|++|+.||++++|+++. ...+.++.+|.+|.++|.|++..+++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 5778999999999999999999999999999999932 334677889999999999999999999 799999999
Q ss_pred cEEEEeC-------CC----ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC--CceEE
Q 001178 479 LIRVWDL-------SG----RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP--GLWCT 545 (1131)
Q Consensus 479 ~i~iwd~-------~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~ 545 (1131)
+|+.|+. +. .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+... ...-.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 9999951 11 2335678999999999998766 4699999999999998866555 222222 12233
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc------CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR------KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
++.+....-.+..++. ..+.-.+.+...+..+..+.... ...+..+..+|...+.+++.+|+.|+++|..+
T Consensus 444 svd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred eEeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 4444332211111111 02222333444444343333211 12355677889999999999999999999999
Q ss_pred CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++++.....+.. .++++++.|+|.+|++++.|+.+++|.+...
T Consensus 521 ~~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 521 GKILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccchheeeccc--eecceeecCCCceEEeecCCceeehhhccch
Confidence 999988776654 7999999999999999999999999998654
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.3e-17 Score=174.27 Aligned_cols=263 Identities=13% Similarity=0.222 Sum_probs=188.9
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.|.+.|++++|.|-.. .|++++.||++.+|++.....-.. ....+..++.+|.++|.|+++++++..+
T Consensus 292 s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~-----------~~~epi~tfraH~gPVl~v~v~~n~~~~ 359 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAE-----------KDVEPILTFRAHEGPVLCVVVPSNGEHC 359 (577)
T ss_pred cchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccc-----------cceeeeEEEecccCceEEEEecCCceEE
Confidence 4999999999999887 699999999999999943211111 1112334688999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCC-------ccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecC--
Q 001178 425 GVAFTKHLIHLYTYQGSN-------DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG-- 495 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~-------~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-- 495 (1131)
.+|+.||+|+.|++.... .......+.||++.|+.+++++... .|++|+.||++++|+..+....++..
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~~~f~~~~ 437 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESPCTFGEPK 437 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCccccCCcc
Confidence 999999999999664211 1122235789999999999999888 69999999999999944333344432
Q ss_pred CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC-------CceEEEEEEccCCCEEEEEeecCCCCce
Q 001178 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-------GLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 568 (1131)
..+...++.+..+.- ...++...-+.-.+.+.+.......+... ...+..+...|.+...+++.. ++.
T Consensus 438 e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he----d~~ 512 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE----DRS 512 (577)
T ss_pred ccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc----CCc
Confidence 223334555432221 12222222222223333333333322211 124677888899988888876 899
Q ss_pred EEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEe
Q 001178 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1131)
|+++|..++.++.....|.. .++++++.|+|.+|++++.|+.+++|.+....++....
T Consensus 513 Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred eecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 99999999999999888776 89999999999999999999999999997766655443
No 182
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.9e-16 Score=157.28 Aligned_cols=295 Identities=12% Similarity=0.156 Sum_probs=207.7
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCccccc-ccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVS-KPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
.++|.+.|+++.||.+|+ +||+|+.|..++||+++..-..+. +++.+ .-..|...|.|++|....
T Consensus 52 ~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-------------~~~~H~SNIF~L~F~~~N 117 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGV-------------MEHPHRSNIFSLEFDLEN 117 (609)
T ss_pred hhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCcee-------------ccCccccceEEEEEccCC
Confidence 457999999999999998 699999999999999875333221 11111 234567899999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCc-ee--EEecCCc
Q 001178 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR-KL--FQFEGHE 497 (1131)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~-~~--~~~~~h~ 497 (1131)
++|.+|..+++|+..|+++.+.+... .-....+.|..+..+|-.+ .+++.+.++.|.+|| .... .+ ..+....
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~ 194 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSG 194 (609)
T ss_pred eeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence 99999999999999999997655311 1122334899999999977 799999999999999 3222 22 2222334
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE-------ecCCCceEEEEEEccCCCEEEEEeecCCCCceEE
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-------YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 570 (1131)
.....+-|+|... .+|++.+..+-+-+||.+....... +......-.++.|+|+|+.+++.-. ...-.
T Consensus 195 ~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~ 269 (609)
T KOG4227|consen 195 KNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPL 269 (609)
T ss_pred ccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCE
Confidence 4566777887544 6888999999999999886543321 1111222367889999999988653 33445
Q ss_pred EEeCCCCee-eEEEecccC-----CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC----------e-------------
Q 001178 571 EWNESEGAL-KRTYIGFRK-----KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV----------N------------- 621 (1131)
Q Consensus 571 iwd~~~~~~-~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----------~------------- 621 (1131)
+||+-+.++ +..+....+ ..+.+++|..+- .+++|+.+-.|++|.+... .
T Consensus 270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred EeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 677665333 223321111 135567777554 4999999999999987531 1
Q ss_pred EEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 622 MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
.+..+.+| ..-++.+.|+|...+|++.+-.+.++||...
T Consensus 349 ~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 349 ELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 12334443 4467899999999999999999999999753
No 183
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.73 E-value=1e-15 Score=150.39 Aligned_cols=377 Identities=12% Similarity=0.157 Sum_probs=240.7
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEE-EEcCCcEEEEEcCCCeEEE
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILA-AGEDNQIKFWDMDNVNMLT 624 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~ 624 (1131)
-..|||+|+++|+++ +.++.+-|..+-+..+.|.... .|.-+.|..+.-++++ ...++.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 367999999999997 5689999988877766555422 4666788888877776 5678899999998877766
Q ss_pred EEeccCCCCCcceEEEcCCCCEEEE-EECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccccc
Q 001178 625 STEAEGGLPSLPRLRFNKEGNLLVV-TTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703 (1131)
Q Consensus 625 ~~~~~~~~~~i~~v~~sp~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 703 (1131)
.+... ...+.+++|||||+.+.. ..-+-.|.+|.+.+...
T Consensus 86 kIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~------------------------------------- 126 (447)
T KOG4497|consen 86 KIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG------------------------------------- 126 (447)
T ss_pred EeccC--CCcceeeeECCCcceEeeeecceeEEEEEEecccee-------------------------------------
Confidence 66543 347899999999966554 45588999999876510
Q ss_pred ccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEE
Q 001178 704 ERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGIL 783 (1131)
Q Consensus 704 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 783 (1131)
..+.. ....+..++|.|||++.+
T Consensus 127 ----------------------------------------------------~~~~~-----pK~~~kg~~f~~dg~f~a 149 (447)
T KOG4497|consen 127 ----------------------------------------------------YLLPH-----PKTNVKGYAFHPDGQFCA 149 (447)
T ss_pred ----------------------------------------------------EEecc-----cccCceeEEECCCCceee
Confidence 00000 123446789999999887
Q ss_pred EeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe---CCeEEEEE
Q 001178 784 ALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG---GGKVSLFN 860 (1131)
Q Consensus 784 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~---dg~i~vwd 860 (1131)
..+.-.....+++. ..+-|.+-.. +. -..-..+.+.|+|||..||+-. +-+|..|.
T Consensus 150 i~sRrDCkdyv~i~--------------~c~~W~ll~~------f~-~dT~DltgieWsPdg~~laVwd~~Leykv~aYe 208 (447)
T KOG4497|consen 150 ILSRRDCKDYVQIS--------------SCKAWILLKE------FK-LDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE 208 (447)
T ss_pred eeecccHHHHHHHH--------------hhHHHHHHHh------cC-CCcccccCceECCCCcEEEEecchhhheeeeee
Confidence 76652111111100 0111221110 00 1244567799999999988754 23333333
Q ss_pred CCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccC--------------------e
Q 001178 861 MMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKH--------------------I 920 (1131)
Q Consensus 861 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~--------------------V 920 (1131)
. .-.+..++|+| .+++||+|+.|+.+++.+--+.+....+- |-.. .
T Consensus 209 ~------------~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~~~~ql~~ 274 (447)
T KOG4497|consen 209 R------------GLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETFSIVQLLH 274 (447)
T ss_pred e------------ccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhcchhhhcc
Confidence 2 23578899999 99999999999999998876665544332 2111 1
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEEcCCCc-eeeeee--ee--cC---CCCCCCCceEEEEcCCCcEEEEEeC---CeEE
Q 001178 921 TGLAFSTNLNILVSSGSDAQLIFWNTDTWE-KRKSIA--IQ--LP---AGKLPVGETRVQFHSDQVRLLVNHE---TQLA 989 (1131)
Q Consensus 921 ~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~-~~~~~~--~~--~~---~~~~~~~v~~v~~s~d~~~l~~~~d---~~i~ 989 (1131)
.++.|.|. |-...+|..+... .....+ ++ .+ .....-.+..++|++|..++++-.| +.+.
T Consensus 275 ~cLsf~p~---------~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW 345 (447)
T KOG4497|consen 275 HCLSFTPT---------DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALW 345 (447)
T ss_pred cccccCCC---------ccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEE
Confidence 23444432 2222333322100 000000 00 00 0011246778999999999999654 5799
Q ss_pred EEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEE
Q 001178 990 IYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVV 1069 (1131)
Q Consensus 990 vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 1069 (1131)
+||+...+.-..+.. ..+|.+..|.|....|+.......+++|....-..++. .... -....+
T Consensus 346 ~Wdlq~l~l~avLiQ----k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~G------------F~i~~l 408 (447)
T KOG4497|consen 346 LWDLQNLKLHAVLIQ----KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKG------------FNIQKL 408 (447)
T ss_pred EEechhhhhhhhhhh----ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCC------------ceeeeE
Confidence 999998887766654 46999999999988888887788899998765333322 2111 123358
Q ss_pred EEcCCCCCeEEEEecCCc
Q 001178 1070 TSHPQEPNQLAVGLTDGS 1087 (1131)
Q Consensus 1070 ~~~p~~~~~l~s~~~Dg~ 1087 (1131)
+|+- ++..++..+.|.-
T Consensus 409 ~W~~-~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 409 QWLQ-PGEFIVLCGKDAF 425 (447)
T ss_pred EecC-CCcEEEEEcCCce
Confidence 8887 5678888888873
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.5e-16 Score=155.16 Aligned_cols=272 Identities=13% Similarity=0.159 Sum_probs=192.7
Q ss_pred EEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEEec
Q 001178 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGNFIGVAFTKHLIHLYTYQ 439 (1131)
Q Consensus 362 llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~~las~~~d~~i~vwd~~ 439 (1131)
.+|++...|.|++||..+++.+. .+++|...++.++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~-------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLE-------------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhh-------------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 58889999999999999988776 3678888999999988 46689999999999999999
Q ss_pred CCCccceeeeeecCc-CCeeEEEEecCCCceEEEEEc----CCCcEEEEe-CCCce-eEE-ecCCccCeEEEeecccCCc
Q 001178 440 GSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCG----DDKLIRVWD-LSGRK-LFQ-FEGHEAPVYSVCPHQKENI 511 (1131)
Q Consensus 440 ~~~~~~~~~~~~~h~-~~V~~l~~s~d~~~~~l~s~s----~d~~i~iwd-~~~~~-~~~-~~~h~~~v~~~~~~~~~~~ 511 (1131)
+.....+. .+.+|. .+..+++..-.++ .+++|. .|-.|.+|| ...+. +.. ...|...|++++|+|+..
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p- 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP- 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence 87654433 355565 4667777765666 566664 467899999 44333 444 457999999999999654
Q ss_pred cEEEEEecCCeEEEEeCCCCcee---EEecCCCceEEEEEEccCC-CEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSR---VDYDAPGLWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR 587 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 587 (1131)
++|++||.||.|.++|+...... .....+...|..+.|..++ +.+.+.+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 79999999999999998765322 2333456679999999887 34555554 7789999999887654443221
Q ss_pred C------------CceEEEEEeC-CCCEEEEEEc-CCcEEEEEcC---CCe---EEEEEeccCCCCCcceEEEcCCCCEE
Q 001178 588 K------------KSAGVVQFDT-TRNRILAAGE-DNQIKFWDMD---NVN---MLTSTEAEGGLPSLPRLRFNKEGNLL 647 (1131)
Q Consensus 588 ~------------~~v~~~~~s~-~~~~l~~~~~-dg~i~iwd~~---~~~---~~~~~~~~~~~~~i~~v~~sp~~~~l 647 (1131)
- ..|. +.+| ++...+.++. -|...++-+. ++. .+..+.. ++..-|.++.|...+.++
T Consensus 255 ~~~~d~r~~~~~dY~I~--~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l 331 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVIN--EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVL 331 (376)
T ss_pred chhhhHHhhhhhhheee--cccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhccccee
Confidence 0 0111 1223 3344554443 5666665443 232 2233332 244467889998889999
Q ss_pred EEEECCCcEEEEecCC
Q 001178 648 VVTTADQGIKILANAD 663 (1131)
Q Consensus 648 ~~~~~dg~i~iw~~~~ 663 (1131)
.+|+.||.+.+|...+
T Consensus 332 ~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 332 YTGGEDGLLQAWKVED 347 (376)
T ss_pred eccCCCceEEEEecCC
Confidence 9999999999998643
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.9e-15 Score=139.63 Aligned_cols=284 Identities=12% Similarity=0.142 Sum_probs=197.9
Q ss_pred cceEEEEeecCCceEEEeeecceeeEEeecCC---CCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCC
Q 001178 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRT---EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN 844 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d 844 (1131)
..|.+-+++|.+++++++..+|.|.++.+..- +..+.++ ..... ..+|..++..++|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk----------------~~iv~-eqahdgpiy~~~f~-- 71 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGK----------------LKIVP-EQAHDGPIYYLAFH-- 71 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCC----------------cceee-ccccCCCeeeeeee--
Confidence 34556688999999999999999999987642 2222222 11111 13799999999998
Q ss_pred CCEEEEEeCCeEEEEECCCcee----E--EEEe-------CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEE
Q 001178 845 DSYVMSAGGGKVSLFNMMNFKV----M--TTFM-------SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911 (1131)
Q Consensus 845 g~~la~~~dg~i~vwd~~~~~~----~--~~~~-------~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~ 911 (1131)
..+|++++||.|+=|....... . .+.. ..-..|+++-..|..+.++. ++.|+.++-||+++|+...
T Consensus 72 d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r 150 (325)
T KOG0649|consen 72 DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQR 150 (325)
T ss_pred hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEE
Confidence 5678889999999987643211 1 1111 12356899999995555555 4589999999999999999
Q ss_pred eecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC----CCCCCCceEEEEcCCCcEEEEEeCCe
Q 001178 912 KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA----GKLPVGETRVQFHSDQVRLLVNHETQ 987 (1131)
Q Consensus 912 ~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~----~~~~~~v~~v~~s~d~~~l~~~~d~~ 987 (1131)
.++||++-|.++.--.....+.||++||++++||.++++........... .+....| .+..-+..+|++|....
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~ 228 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPK 228 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCCCc
Confidence 99999999999998556668999999999999999998865543322111 1111223 34445666899999999
Q ss_pred EEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccE
Q 001178 988 LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPL 1067 (1131)
Q Consensus 988 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1067 (1131)
+.+|.++..++...+... .++..+.|- .+.++++++.+.|.-|.+. |.+...+...+. ..+..
T Consensus 229 lslwhLrsse~t~vfpip----a~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~----------~c~s~ 291 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPIP----ARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVEST----------ACYSA 291 (325)
T ss_pred eeEEeccCCCceEEEecc----cceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCcc----------ceeee
Confidence 999999999988887654 688888886 4468888888899999875 444444433221 11222
Q ss_pred EEEEcCCCCCeEEEEecCCcEEEEe
Q 001178 1068 VVTSHPQEPNQLAVGLTDGSVKVIE 1092 (1131)
Q Consensus 1068 ~v~~~p~~~~~l~s~~~Dg~v~iW~ 1092 (1131)
.+.-+| -.++..+|..+.+.|+.
T Consensus 292 s~~~~p--~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 292 SWQTSP--IKFISIAGFSNKLHILK 314 (325)
T ss_pred cccCCc--eEEEEecccceeeeeee
Confidence 233233 24666777777777654
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.1e-16 Score=156.66 Aligned_cols=292 Identities=14% Similarity=0.171 Sum_probs=198.2
Q ss_pred EEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec--CCC-ceEE
Q 001178 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD--APG-LWCT 545 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~-~~v~ 545 (1131)
.++++-..|.|++|| .+|+.+..++++...++.+.|........+++++.||+|++||++.......+. .+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 678888899999999 889999999999999999999875566789999999999999999876655433 333 3566
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCCee-eEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCe--
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL-KRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVN-- 621 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-- 621 (1131)
+++.+-.++.++++..-...+..+.+||++..+. ++.+...|...|++++|+|.. +.|++|+.||-+.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7777667888888765555688999999998765 666665556699999999976 689999999999999997643
Q ss_pred --EEEEEeccCCCCCcceEEEcCCC-CEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccc
Q 001178 622 --MLTSTEAEGGLPSLPRLRFNKEG-NLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1131)
Q Consensus 622 --~~~~~~~~~~~~~i~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1131)
++.++. +...|..+.|..++ +.+.+-+...+..+|+++.+..... +.......... .-.......+-..+|
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~-~~~~~~~~~d~--r~~~~~dY~I~~~~~ 275 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW-LENPDVSADDL--RKEDNCDYVINEHSP 275 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc-ccCccchhhhH--HhhhhhhheeecccC
Confidence 222222 22368899998876 4588888999999999988842222 11110000000 000000000001111
Q ss_pred cccccccccCCCCCCccccccCCCccccCCCCceec-cccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeec
Q 001178 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNL-EDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTN 777 (1131)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 777 (1131)
. +....+. ++..+...++.+................ .+|..-|+++.|..
T Consensus 276 ~----------------------------~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~~ 326 (376)
T KOG1188|consen 276 G----------------------------DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFDV 326 (376)
T ss_pred C----------------------------CcceEEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhhc
Confidence 1 1222222 3324555665555322222222222222 44777788899999
Q ss_pred CCceEEEeeecceeeEEee
Q 001178 778 SGIGILALWSNGVQKLWKW 796 (1131)
Q Consensus 778 ~g~~l~~~~~dg~i~iw~~ 796 (1131)
.+..+.+++.||.+.+|..
T Consensus 327 ~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 327 KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccceeeccCCCceEEEEec
Confidence 9999999999999999974
No 187
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=4.1e-16 Score=150.61 Aligned_cols=212 Identities=21% Similarity=0.364 Sum_probs=160.7
Q ss_pred ceeeecc--CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 339 AVACTMH--QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 339 ~~~~~~~--h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
+++..+. +-+.|.|+.|.|++.. +|+- .|..|.+|++..+..+.. .+ ....-.+|....++-+
T Consensus 113 E~v~~Ldteavg~i~cvew~Pns~k-lasm-~dn~i~l~~l~ess~~va-ev------------~ss~s~e~~~~ftsg~ 177 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEWEPNSDK-LASM-DDNNIVLWSLDESSKIVA-EV------------LSSESAEMRHSFTSGA 177 (370)
T ss_pred hHhhcCCHHHhCceeeEEEcCCCCe-eEEe-ccCceEEEEcccCcchhe-ee------------cccccccccceecccc
Confidence 4444443 5569999999999987 4433 389999999998776421 11 0111224677889999
Q ss_pred EcC--CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEE
Q 001178 417 WSP--DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQ 492 (1131)
Q Consensus 417 ~sp--dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~ 492 (1131)
||| ||..+++. .|+++..||+++.++...+ -.+|...|.++.|+|+-+. +|+||++||.|+||| .+..++.+
T Consensus 178 WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~e 253 (370)
T KOG1007|consen 178 WSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQE 253 (370)
T ss_pred cCCCCccceEEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccc
Confidence 999 88888876 5789999999987654432 3578889999999999887 899999999999999 66778999
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC-----------------------------ceeEEecCCCce
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV-----------------------------GSRVDYDAPGLW 543 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-----------------------------~~~~~~~~~~~~ 543 (1131)
+.+|...|+++.|++..+ ++|++++.|..|.+|....- +.+..+..|...
T Consensus 254 l~~HsHWvW~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS 332 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS 332 (370)
T ss_pred cCCCceEEEEEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccc
Confidence 999999999999998766 79999999999999954321 112245567778
Q ss_pred EEEEEEccCCCEE-EEEeecCCCCceEEEEeC
Q 001178 544 CTTMLYSADGSRL-FSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 544 v~~~~~s~~g~~l-~~~~~~~~~~~~i~iwd~ 574 (1131)
|.+++|+.-..++ |+-+. ||++.|=.+
T Consensus 333 VY~~aWSsadPWiFASLSY----DGRviIs~V 360 (370)
T KOG1007|consen 333 VYALAWSSADPWIFASLSY----DGRVIISSV 360 (370)
T ss_pred eEEEeeccCCCeeEEEecc----CceEEeecC
Confidence 9999998766554 45554 777776554
No 188
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3e-16 Score=164.31 Aligned_cols=215 Identities=18% Similarity=0.251 Sum_probs=161.6
Q ss_pred eeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe-cCCccCeEEEeecccCCccEEEEEecCCeEEE
Q 001178 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKA 525 (1131)
Q Consensus 448 ~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 525 (1131)
.++.||++-|++++|+.||. +|+|||+|-.+.||| ..-+.+..+ .||.+.|.++.|.|..+..++++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 36899999999999999999 899999999999999 777777665 48999999999999998899999999999999
Q ss_pred EeCCCC----------ceeEEecCCCceEEEEEEccCC-CEEEEEeecCCCCceEEEEeCCCCeeeE----------EEe
Q 001178 526 WLYDNV----------GSRVDYDAPGLWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNESEGALKR----------TYI 584 (1131)
Q Consensus 526 wd~~~~----------~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~----------~~~ 584 (1131)
+|+... .....+..|...|..++..|++ ..+.+++. ||+|+-+|++...... .+.
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE----DGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE----DGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC----CcceeeecccCCccCCccccccHHHHHhc
Confidence 999852 2233455677788999999998 66777776 9999999998642211 111
Q ss_pred cccCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCC--------Ce----------EEEEEe-ccC-C--------CCCc
Q 001178 585 GFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDN--------VN----------MLTSTE-AEG-G--------LPSL 635 (1131)
Q Consensus 585 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~--------~~----------~~~~~~-~~~-~--------~~~i 635 (1131)
..- -...++.++|... +|++|+.|-..++||.+. +. ++..+. .+- . ...+
T Consensus 198 ~~l-ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~ 276 (758)
T KOG1310|consen 198 PQL-IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCC 276 (758)
T ss_pred hhh-heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeee
Confidence 111 1456788999764 788899999999999421 11 111111 110 0 0124
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEecCCCchhhh
Q 001178 636 PRLRFNKEGNLLVVTTADQGIKILANADGLRALR 669 (1131)
Q Consensus 636 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1131)
+.++|+|+|.-|.+.-..-.|+++++..++....
T Consensus 277 t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred EEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 5688999998888877777999999988754443
No 189
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=1.6e-16 Score=151.52 Aligned_cols=283 Identities=17% Similarity=0.206 Sum_probs=196.1
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceecc-CCCCCEEEEEEcCCCCE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK-DSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~spdg~~ 423 (1131)
.|.+.|+|+.|-.+++ |.+|..-|.|++|++.+.+... .+. .|...|+.+.--|+ ..
T Consensus 12 p~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~-------------------~~r~~g~~~it~lq~~p~-d~ 69 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLP-------------------LIRLFGRLFITNLQSIPN-DS 69 (323)
T ss_pred cccchheehhhccchh--hhcccccceEEEEEeecCccch-------------------hhhhhccceeeceeecCC-cc
Confidence 5999999999999986 7889999999999999876554 233 56778999988887 56
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC-----CCce--EEEEEcCCCc-EEEEe-CCCceeEEe-
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP-----NKQL--CIVTCGDDKL-IRVWD-LSGRKLFQF- 493 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d-----~~~~--~l~s~s~d~~-i~iwd-~~~~~~~~~- 493 (1131)
|.+-+.|..+.+|++..+..+ ..|.-.++++-|.+- ++.. .++.-+.... +.+-| -....+...
T Consensus 70 l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 70 LDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred hhhcCCCceEEEEEccCcceE------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC
Confidence 778889999999999875432 234445566666542 1110 1111111000 11222 111111111
Q ss_pred ---cCCccCeEEEeecccCCc-cEEEEEecCCeEEEEeCCCCceeE----------EecCCCceEEEEEEccCCCEEEEE
Q 001178 494 ---EGHEAPVYSVCPHQKENI-HFIFSTAVDGKIKAWLYDNVGSRV----------DYDAPGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 494 ---~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~----------~~~~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
.+..+.+.+..+...... -++++|-.+|.+.+||+.++.... ....|..+|.++.|.+.-..=+++
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence 133455666654332222 356678899999999999874443 334566789999998765555555
Q ss_pred eecCCCCceEEEEeCCC--Cee-eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcc
Q 001178 560 GTSKEGDSHLVEWNESE--GAL-KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~~~--~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 636 (1131)
+. +-.+..|++.. +.+ ++......+..+..+.+-||++.+++++.|++||||+.++..++..+..|.. .|+
T Consensus 224 ga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gvn 297 (323)
T KOG0322|consen 224 GA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GVN 297 (323)
T ss_pred Cc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--cee
Confidence 54 55677777653 322 2222222344688899999999999999999999999999999999998874 899
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEec
Q 001178 637 RLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 637 ~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
+++|+|+..++|.++.|+.|.+|++
T Consensus 298 ~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999985
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=1.2e-14 Score=161.47 Aligned_cols=201 Identities=11% Similarity=0.144 Sum_probs=130.7
Q ss_pred eeEEEecCCCCEEEEEe--CCeEEEEECCC-ce---eEEEEeCCCCCeeEEEEeCCCCcEE-EEEeCCCcEEEEEeecce
Q 001178 836 VPCVALSKNDSYVMSAG--GGKVSLFNMMN-FK---VMTTFMSPPPASTFLAFHPQDNNII-AIGMEDSTIQIYNVRVDE 908 (1131)
Q Consensus 836 i~~l~~s~dg~~la~~~--dg~i~vwd~~~-~~---~~~~~~~~~~~i~~l~~s~~~~~~l-a~g~~dg~I~iwd~~~~~ 908 (1131)
...++|+|+|+++++++ ++.|.+|++.+ +. .+..+. +.....+++++| +++++ ++...++.|.+||+.+..
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCC
Confidence 34678888888887776 67888888863 21 222222 224467789999 66655 555667999999997633
Q ss_pred eEE-------eecccccCeeEEEEccCCCEEEEEeC-CCcEEEEEcCC--Cceeeeeeeec-CCC-CCCCCceEEEEcCC
Q 001178 909 VKT-------KLKGHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDT--WEKRKSIAIQL-PAG-KLPVGETRVQFHSD 976 (1131)
Q Consensus 909 ~~~-------~~~~h~~~V~~l~~s~dg~~l~s~~~-Dg~v~lwd~~~--~~~~~~~~~~~-~~~-~~~~~v~~v~~s~d 976 (1131)
.+. .... ......++|+|||++++++.. +++|.+|+++. ++......+.. +.. ........+.++|+
T Consensus 160 ~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 160 HLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 221 1111 234578999999999988876 89999999974 22211111111 111 11123346899999
Q ss_pred CcEEEEEe--CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEECC
Q 001178 977 QVRLLVNH--ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT-DGSIGVFDAD 1039 (1131)
Q Consensus 977 ~~~l~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~-dg~i~vwd~~ 1039 (1131)
+++++++. ++.|.+|++........+..+..-......++|+|||++|+++.. +++|.+|+++
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 99999873 678999998653321222221110234567899999999998885 8999999874
No 191
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=1.2e-15 Score=147.54 Aligned_cols=183 Identities=14% Similarity=0.233 Sum_probs=128.6
Q ss_pred eeEEEecC--CCCEEEEEeCCeEEEEECCCceeEEEEe-CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec-ceeEE
Q 001178 836 VPCVALSK--NDSYVMSAGGGKVSLFNMMNFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-DEVKT 911 (1131)
Q Consensus 836 i~~l~~s~--dg~~la~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~-~~~~~ 911 (1131)
.++-+||| ||..+++.+|+++..||+.+..+...+. .|...|..+.|.|+...+||+++.||.|+|||.+. ..++.
T Consensus 173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence 33446665 8999999999999999999887776665 68889999999996667899999999999999974 56788
Q ss_pred eecccccCeeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEE
Q 001178 912 KLKGHQKHITGLAFSTN-LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAI 990 (1131)
Q Consensus 912 ~~~~h~~~V~~l~~s~d-g~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v 990 (1131)
.+.+|...|+++.|+|. .+++.++|.|..|.+|...+-.............. .++ .+..=++
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese----------~e~-------~dseer~ 315 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE----------SED-------EDSEERV 315 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccccccc----------Ccc-------hhhHHhc
Confidence 99999999999999996 56788999999999998766222111111000000 000 0000000
Q ss_pred EeCCCcccceeeecCCCCCCCeEEEEEccCCC-EEEEEecCCcEEEEECC
Q 001178 991 YDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 991 wd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~-~l~s~~~dg~i~vwd~~ 1039 (1131)
=-+.. ..+..+..| ...|++++||.-.. .+|+-+.||.+.|=.+.
T Consensus 316 kpL~d-g~l~tydeh---EDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 316 KPLQD-GQLETYDEH---EDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccc-ccccccccc---ccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 01111 122333333 88999999998666 55666789999886654
No 192
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=4.6e-16 Score=148.52 Aligned_cols=307 Identities=14% Similarity=0.175 Sum_probs=198.5
Q ss_pred eEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEE
Q 001178 534 RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1131)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 613 (1131)
.+.+..+...++++.|..+++ |+++.. .|.+.+|++++.+....+..+....++.+..-|+ ..+.+-+.|+.+.
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~----~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLS----VGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLI 80 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccc----cceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEE
Confidence 344556777899999998887 556554 8999999999998888888777768888888886 6788899999999
Q ss_pred EEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCC-cEEEEecCCCchhhhhhhccccccccccccccccCccc
Q 001178 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ-GIKILANADGLRALRAIETRAYETSRASTEMKVPGSAV 692 (1131)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1131)
+|++..+..+..-.. .++++-|.+-. +...+... .+..++.+.. ...+...+...
T Consensus 81 lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgs-de~h~~D~g~~---------------- 136 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGS-DETHKQDGGDT---------------- 136 (323)
T ss_pred EEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCccc-chhhhhccCcc----------------
Confidence 999987665543321 34444444321 11111111 1111111111 00000000000
Q ss_pred eecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEE
Q 001178 693 VTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772 (1131)
Q Consensus 693 ~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 772 (1131)
-.+++-+-. .....+.+.+
T Consensus 137 ----------------------------------------------tqv~i~dd~---------------~~~Klgsvmc 155 (323)
T KOG0322|consen 137 ----------------------------------------------TQVQIADDS---------------ERSKLGSVMC 155 (323)
T ss_pred ----------------------------------------------ceeEccCch---------------hccccCceee
Confidence 000000000 0112233333
Q ss_pred EEeec-CC--ceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEE
Q 001178 773 LLYTN-SG--IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVM 849 (1131)
Q Consensus 773 l~~s~-~g--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 849 (1131)
..+.. ++ -.+++|..+|.+.+||++.+....+-. ..|... . .. ..|..++.++.+.+.-..=+
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~-------~~~kv~-----~-~~-ash~qpvlsldyas~~~rGi 221 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP-------QSSKVE-----S-PN-ASHKQPVLSLDYASSCDRGI 221 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccc-------cccccc-----c-ch-hhccCcceeeeechhhcCCc
Confidence 33221 12 245667779999999998752211111 111111 1 11 15899999999987655555
Q ss_pred EEe-CCeEEEEECCC--ce--eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEE
Q 001178 850 SAG-GGKVSLFNMMN--FK--VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA 924 (1131)
Q Consensus 850 ~~~-dg~i~vwd~~~--~~--~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 924 (1131)
+|+ +..+..|+++. +. ...+.......|..+.+-| |++++|++++|+.|+||+.++..++..++.|.+.|.+++
T Consensus 222 sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vA 300 (323)
T KOG0322|consen 222 SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVA 300 (323)
T ss_pred CCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEE
Confidence 666 67788888763 22 2233334456788999999 999999999999999999999999999999999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEEc
Q 001178 925 FSTNLNILVSSGSDAQLIFWNT 946 (1131)
Q Consensus 925 ~s~dg~~l~s~~~Dg~v~lwd~ 946 (1131)
|+||...+|.++.|++|-+|++
T Consensus 301 fspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 301 FSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999986
No 193
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=5e-17 Score=178.18 Aligned_cols=237 Identities=17% Similarity=0.251 Sum_probs=185.3
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+.+|...|.|++|...|.++++|++|..++||..+++.++. ...||.+.|+.++.+.+.. +++++|.|..|++|.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVWR 260 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEEe
Confidence 66999999999999999999999999999999999988776 7899999999999998877 899999999999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE---e-cCCCceEEEEEEccCCCEEEEE
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD---Y-DAPGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~---~-~~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
..+.++..+.+|++.|++++|+|-. +.+.||++++||.+-...... . .....-+.++.|...+..++++
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 8999999999999999999998744 788999999999882111111 0 1122357778888888888888
Q ss_pred eecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 560 GTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
+. ++.-..|....- ..+.. .+.-+.++.+- .+.+++-.+-.+.+|++.+|...+.+..+.+ .+..+
T Consensus 335 s~----d~ea~n~e~~~l------~~~~~-~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvL 401 (1113)
T KOG0644|consen 335 SR----DGEARNHEFEQL------AWRSN-LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVL 401 (1113)
T ss_pred cC----CcccccchhhHh------hhhcc-ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc--ceeee
Confidence 76 555555543321 11111 11112222222 4667777888999999999999988887766 78899
Q ss_pred EEcC-CCCEEEEEECCCcEEEEecCCCc
Q 001178 639 RFNK-EGNLLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 639 ~~sp-~~~~l~~~~~dg~i~iw~~~~~~ 665 (1131)
.++| +.+...+++.||...|||+..+.
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeecccCC
Confidence 9999 55566788999999999997773
No 194
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.6e-14 Score=136.27 Aligned_cols=280 Identities=16% Similarity=0.230 Sum_probs=190.0
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 428 (1131)
.|.+-++||.++ +|+.|..+|.|.+..+++--.-... .......-...+|.++|..++|. .++|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~---------~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAE---------PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccC---------CCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 355567899998 5889999999999998652211100 00000111347999999999998 45677665
Q ss_pred CCCeEEEEEecCCCc---ccee--eeeecCc-----CCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCc
Q 001178 429 TKHLIHLYTYQGSND---LCQS--LEIDAHV-----GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE 497 (1131)
Q Consensus 429 ~d~~i~vwd~~~~~~---~~~~--~~~~~h~-----~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~ 497 (1131)
||.|+-|....... .+.. .....|. -.|+++-..|... -++.++.|+.++-|| .+|+...+++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998754322 0100 0112233 3588999998877 466677899999999 9999999999999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC----------CceEEEEEEccCCCEEEEEeecCCCCc
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP----------GLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~----------~~~v~~~~~s~~g~~l~~~~~~~~~~~ 567 (1131)
+.|.++.--. ....+++|+.||++|+||.++.+....+... +.+|.+++. +..++++++ ..
T Consensus 157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-----CC
Confidence 9999997532 2247899999999999999998877655432 234555554 566888876 66
Q ss_pred eEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCC-CE
Q 001178 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG-NL 646 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~-~~ 646 (1131)
.+.+|.++..++...|.-. ..+..+.|. .+.+++++..+.+.-|.+. |......+...+ ..++..++... ++
T Consensus 228 ~lslwhLrsse~t~vfpip--a~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIP--ARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEecc--cceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 8999999998888877632 257777785 4578888888899999874 444444443332 33444443322 34
Q ss_pred EEEEECCCcEEEE
Q 001178 647 LVVTTADQGIKIL 659 (1131)
Q Consensus 647 l~~~~~dg~i~iw 659 (1131)
+-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4444555566555
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=3.5e-14 Score=157.87 Aligned_cols=254 Identities=9% Similarity=0.057 Sum_probs=164.5
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECC-Ccee--EEEEeCCCCCeeEEEEeCCCCcEEEEEe-CCCcEEEEEeec-
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMM-NFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGM-EDSTIQIYNVRV- 906 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~-~~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~I~iwd~~~- 906 (1131)
.....++++||+++|++++ ++.|.+|++. ++.. +.... .......++|+| ++++|++++ .++.|.+|++++
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCC
Confidence 4566789999999998775 6889999986 3432 22222 234567899999 777666665 488999999974
Q ss_pred c---eeEEeecccccCeeEEEEccCCCEEEE-EeCCCcEEEEEcCCCceeee---eeeecCCCCCCCCceEEEEcCCCcE
Q 001178 907 D---EVKTKLKGHQKHITGLAFSTNLNILVS-SGSDAQLIFWNTDTWEKRKS---IAIQLPAGKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 907 ~---~~~~~~~~h~~~V~~l~~s~dg~~l~s-~~~Dg~v~lwd~~~~~~~~~---~~~~~~~~~~~~~v~~v~~s~d~~~ 979 (1131)
+ +.+..+.+ .....+++++|+|+++++ ...++.|.+||+++...... .......+ .....++|+|+|++
T Consensus 113 g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g---~~p~~~~~~pdg~~ 188 (330)
T PRK11028 113 GIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG---AGPRHMVFHPNQQY 188 (330)
T ss_pred CCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC---CCCceEEECCCCCE
Confidence 2 22333332 234677899999998855 44579999999987332211 11112222 45678999999999
Q ss_pred EEEEe--CCeEEEEeCCC--c--ccceeeecCC---CCCCCeEEEEEccCCCEEEEEec-CCcEEEEECCCCceeeEecC
Q 001178 980 LLVNH--ETQLAIYDGSK--M--ECIRQWVPQD---VLSSPISSAAYSCNSQLIYATFT-DGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 980 l~~~~--d~~i~vwd~~~--~--~~~~~~~~~~---~~~~~v~~i~~s~dg~~l~s~~~-dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
+++.. ++.|.+|+++. + +.+..+.... .+......+.|+|||++|+++.. ++.|.+|+++.......+..
T Consensus 189 lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 189 AYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred EEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence 98764 78999999973 2 2233332211 11223346899999999999864 68999999965432112211
Q ss_pred CccccCCCCCCCCccccEEEEEcCCCCCeEEEEec-CCcEEEEecCCCccccccc
Q 001178 1050 SAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLT-DGSVKVIEPSETERKWGVA 1103 (1131)
Q Consensus 1050 ~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~-Dg~v~iW~~~~~~~~w~~~ 1103 (1131)
+... . ..+-.+.++| ++.+|++++. +++|.+|++....+.+...
T Consensus 269 ~~~~--~-------~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l~~~ 313 (330)
T PRK11028 269 HQPT--E-------TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLLTEL 313 (330)
T ss_pred EEec--c-------ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcEEEc
Confidence 1100 0 1233478899 4566665554 9999999997665555443
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=6e-15 Score=165.70 Aligned_cols=275 Identities=16% Similarity=0.241 Sum_probs=203.6
Q ss_pred CCCCcccccCCCcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceece
Q 001178 324 VPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAA 403 (1131)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1131)
+++...+|+..+. ...-..+.-...|+|++|+|....++|.|+.+|.|.+||+..+....... ...
T Consensus 220 ~~~~~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~ 285 (555)
T KOG1587|consen 220 PDGVLLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSA 285 (555)
T ss_pred CCceEEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------ccc
Confidence 3346788988886 66777788899999999999988899999999999999998876531100 111
Q ss_pred eccCCCCCEEEEEEcCCCCE--EEEEeCCCeEEEEEecCCCccceeeee--e-------cCcCCeeEEEEecCCCceEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNF--IGVAFTKHLIHLYTYQGSNDLCQSLEI--D-------AHVGGVNDLAFSYPNKQLCIV 472 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~--las~~~d~~i~vwd~~~~~~~~~~~~~--~-------~h~~~V~~l~~s~d~~~~~l~ 472 (1131)
....|..+|+.+.|-.+-.- +++++.||.|..|+++.-........+ . .-...+++++|.+.... .++
T Consensus 286 ~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~Fi 364 (555)
T KOG1587|consen 286 LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFI 364 (555)
T ss_pred ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEE
Confidence 35589999999999876544 999999999999988653321111001 1 12246899999997776 799
Q ss_pred EEcCCCcEEEEe---CCCce------eEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCC-CCceeEEecCCCc
Q 001178 473 TCGDDKLIRVWD---LSGRK------LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD-NVGSRVDYDAPGL 542 (1131)
Q Consensus 473 s~s~d~~i~iwd---~~~~~------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~ 542 (1131)
.|+.+|.|.-=+ .+-.. +..+..|.++|.++.++|-.. ..+++++ |.++++|.-. ....+..+..+..
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~ 442 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPD 442 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccc
Confidence 999999988733 22222 345667899999999877654 3444555 9999999887 6666667777777
Q ss_pred eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe--eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 543 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
.+++++|||-.-.++.+. +.+|.|.+||+.... ++.+.... ....+.+.|++.|+.+++|...|++.+|++..
T Consensus 443 ~v~~vaWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 443 YVTDVAWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eeeeeEEcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 899999999876666654 359999999986533 33333332 33566788999999999999999999999864
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=9.6e-15 Score=146.55 Aligned_cols=300 Identities=16% Similarity=0.189 Sum_probs=214.8
Q ss_pred EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC------CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC
Q 001178 536 DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES------EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609 (1131)
Q Consensus 536 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 609 (1131)
.+..|.+.|+++.|+.++++|++++. +..+.+|++. +.+++.....++...|.+++|.....++++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 34567888999999999999999986 8899999974 3466666666676789999999888899999999
Q ss_pred CcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccC
Q 001178 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPG 689 (1131)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1131)
++|...|+.+.+.+.........+.|+.+..+|..+.+++.+.++.|.+||.........
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~-------------------- 186 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS-------------------- 186 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc--------------------
Confidence 999999999999999888777667899999999999999999999999999866521100
Q ss_pred ccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccc
Q 001178 690 SAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASK 769 (1131)
Q Consensus 690 ~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1131)
.+.|. .....
T Consensus 187 -----~~~~A-----------------------------------------------------------------N~~~~ 196 (609)
T KOG4227|consen 187 -----LVLPA-----------------------------------------------------------------NSGKN 196 (609)
T ss_pred -----eeeec-----------------------------------------------------------------CCCcc
Confidence 00000 01223
Q ss_pred eEEEEeecCCceEE-EeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEE
Q 001178 770 VARLLYTNSGIGIL-ALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV 848 (1131)
Q Consensus 770 i~~l~~s~~g~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 848 (1131)
...+.|.|....|+ +....+-+-+||....... ++.....+ .++ .....-.++.|+|.|..+
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~------------~~~~~~~~----~L~-~~~~~~M~~~~~~~G~Q~ 259 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQARP------------VYQRSMFK----GLP-QENTEWMGSLWSPSGNQF 259 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccccch------------HHhhhccc----cCc-ccchhhhheeeCCCCCee
Confidence 34556666654444 4455677777876542211 00000000 011 012223567899999988
Q ss_pred EEEeCC-eEEEEECCCceeEEEEeCCC-------CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc-------------
Q 001178 849 MSAGGG-KVSLFNMMNFKVMTTFMSPP-------PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD------------- 907 (1131)
Q Consensus 849 a~~~dg-~i~vwd~~~~~~~~~~~~~~-------~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~------------- 907 (1131)
.+--.+ .-.+||+-+..+...-..|. ..+.+++|.- ..-+++|+.+-.|++|.+...
T Consensus 260 msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~ 337 (609)
T KOG4227|consen 260 MSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDE 337 (609)
T ss_pred hhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccccCcch
Confidence 877643 45677887755433222222 2467788875 455999999999999987521
Q ss_pred ----------eeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001178 908 ----------EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 908 ----------~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~ 948 (1131)
+.+..++||..-+..+.|+|...+|++.|..+.+++|.--.
T Consensus 338 ~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 338 EEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred hhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 23567899999999999999999999999999999997543
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=6.3e-15 Score=166.18 Aligned_cols=202 Identities=17% Similarity=0.212 Sum_probs=150.3
Q ss_pred EEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeC-CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc---eeEEee
Q 001178 839 VALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD---EVKTKL 913 (1131)
Q Consensus 839 l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~---~~~~~~ 913 (1131)
+.|-....+|.+++ -..|+|||...-.+...+.. ...-|+++.-+...|.++|+|..||.|++||.+.. ..+...
T Consensus 1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred eehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee
Confidence 34444434444444 57799999998877777653 34557777766557899999999999999998743 457788
Q ss_pred cccccC--eeEEEEccCCCE-EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEE
Q 001178 914 KGHQKH--ITGLAFSTNLNI-LVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAI 990 (1131)
Q Consensus 914 ~~h~~~--V~~l~~s~dg~~-l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v 990 (1131)
+.|+.. |..+.+-+.|-. |++|+.||.|++||+..........+... -..++..+++..+++...+|+|+.+.|+|
T Consensus 1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~-~~yGs~lTal~VH~hapiiAsGs~q~ikI 1329 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH-WEYGSALTALTVHEHAPIIASGSAQLIKI 1329 (1387)
T ss_pred cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec-cccCccceeeeeccCCCeeeecCcceEEE
Confidence 899988 999999987755 99999999999999998532222222111 11124589999999999999998899999
Q ss_pred EeCCCcccceeeecCCC----CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 001178 991 YDGSKMECIRQWVPQDV----LSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR 1042 (1131)
Q Consensus 991 wd~~~~~~~~~~~~~~~----~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1042 (1131)
|++.. +.+..+..... ....+.|++|.|---+||+|+.|.+|.||..+...
T Consensus 1330 y~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1330 YSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99873 33333322211 15678999999999999999999999999877654
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=1.8e-13 Score=137.86 Aligned_cols=241 Identities=10% Similarity=0.125 Sum_probs=182.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG 487 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 487 (1131)
...+..+.|+.|...|..|+.|| -++|+...-... .........|.-+-|+.. -+.+++..+-+.+++.+ ..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~---~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC---FSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh---hcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccC
Confidence 44677888999999999999998 678887653321 111222234555566644 21333443334589999 666
Q ss_pred ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC---CCceEEEEEEccCCCEEEEEeecCC
Q 001178 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA---PGLWCTTMLYSADGSRLFSCGTSKE 564 (1131)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~~~~~~~~ 564 (1131)
..++.+. ...+|.++.++. +.|+.+-.+. |+|||+++.+.+..+.. +...+.++.+++.+.+++.-+. .
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s--~ 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS--T 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC--C
Confidence 6676665 456788888743 4566555444 99999999888775544 3345777777778889988653 3
Q ss_pred CCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCc-EEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ-IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
..|.|++||..+-+.+..+..|.+ .+.+++|+++|.+||++++.|+ ||||.+.+|+.+..+........|.+++|+|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 478999999999999999998766 9999999999999999999987 69999999999998876655567899999999
Q ss_pred CCEEEEEECCCcEEEEecCCC
Q 001178 644 GNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+.+|++.+..++|++|.+...
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCeEEEecCCCeEEEEEeccc
Confidence 999999999999999998764
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=2e-14 Score=161.58 Aligned_cols=249 Identities=16% Similarity=0.157 Sum_probs=181.5
Q ss_pred CCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCCcc--ce-eeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 408 SSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDL--CQ-SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 408 h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~--~~-~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
-...|.|++|+| +..++|.|..+|.|.+||+..+... .. ......|..+|+.+.|..+-...-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 457899999999 6778888999999999999887652 11 1123468899999999876543359999999999999
Q ss_pred eCCCc-------eeEEec------CCccCeEEEeecccCCccEEEEEecCCeEEEEeCC---CCc-----eeEEecCCCc
Q 001178 484 DLSGR-------KLFQFE------GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD---NVG-----SRVDYDAPGL 542 (1131)
Q Consensus 484 d~~~~-------~~~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~---~~~-----~~~~~~~~~~ 542 (1131)
+...- +..... .-...++++.|.+... ..++.|+.+|.|.--... ... ....+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 83211 111111 1224578888876544 678899999999873322 222 1224556778
Q ss_pred eEEEEEEccCCCEEEEEeecCCCCceEEEEeCC-CCeeeEEEecccCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCCC
Q 001178 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-EGALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNV 620 (1131)
Q Consensus 543 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1131)
+|+++.++|-+..++..+. |.++++|... ...++..+..+.. .++.++|||... .|+++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 9999999998776665543 8999999977 5566666665444 599999999875 5666778999999999764
Q ss_pred e--EEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 621 N--MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 621 ~--~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
. ++...... ....+.+.|+++|+.+++|...|.+.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 3 33333333 336788889999999999999999999998654
No 201
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=3.1e-14 Score=138.01 Aligned_cols=247 Identities=15% Similarity=0.210 Sum_probs=178.8
Q ss_pred CCCCCeeEEEecCCCC----EEEEEeCCeEEEEECCC--ceeE--EEE-----eCCCCCeeEEEEeCCCCcEEEEEeCCC
Q 001178 831 NAEDVVPCVALSKNDS----YVMSAGGGKVSLFNMMN--FKVM--TTF-----MSPPPASTFLAFHPQDNNIIAIGMEDS 897 (1131)
Q Consensus 831 ~~~~~i~~l~~s~dg~----~la~~~dg~i~vwd~~~--~~~~--~~~-----~~~~~~i~~l~~s~~~~~~la~g~~dg 897 (1131)
.|..+++.+.|.|+.+ -++..++..+|+|.+.. .+.. ..+ ..+..++++..|..-+.++|.+.+-|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 5889999999999874 23344466899999873 2211 111 135578999999988889999999999
Q ss_pred cEEEEEeecce---eEEeecccccCeeEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEE
Q 001178 898 TIQIYNVRVDE---VKTKLKGHQKHITGLAFSTNL-NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF 973 (1131)
Q Consensus 898 ~I~iwd~~~~~---~~~~~~~h~~~V~~l~~s~dg-~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 973 (1131)
+..|||++++. ....+.+|..+|..++|+.++ +.+|++|.||.|+++|+...+- ...+- .......+...++|
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH--STIIY-E~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH--STIIY-EDPSPSTPLLRLSW 250 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc--ceEEe-cCCCCCCcceeecc
Confidence 99999999863 467889999999999999865 4799999999999999987442 11111 11221367788888
Q ss_pred cCCCc-EEEE--EeCCeEEEEeCCC-cccceeeecCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCceeeEec
Q 001178 974 HSDQV-RLLV--NHETQLAIYDGSK-MECIRQWVPQDVLSSPISSAAYSCNS-QLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 974 s~d~~-~l~~--~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~v~~i~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
++..- ++|+ .....|.|.|++. ...+..+..| .+.|++++|.|.. ..|.+++.|..+.+||+...-......
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H---~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH---QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED 327 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC---cccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence 87654 5555 3467899999986 5566777776 8999999999964 599999999999999998654311111
Q ss_pred CCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEE
Q 001178 1049 PSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVI 1091 (1131)
Q Consensus 1049 ~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW 1091 (1131)
+..... .++.|+ .+.|+|..++.++.+... ++.+-
T Consensus 328 Pilay~-----a~~EVN--qi~Ws~~~~Dwiai~~~k-kleiL 362 (364)
T KOG0290|consen 328 PILAYT-----AGGEVN--QIQWSSSQPDWIAICFGK-KLEIL 362 (364)
T ss_pred chhhhh-----ccceee--eeeecccCCCEEEEEecC-eeeEE
Confidence 111111 244455 688888888888887743 34443
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2.2e-14 Score=161.87 Aligned_cols=290 Identities=15% Similarity=0.198 Sum_probs=202.1
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC--CCCEEEE
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGNFIGV 426 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~~las 426 (1131)
.-..+.|+|-.. .++++...-.|+|||++.++.+.. |+. -......|+.+.+-. |..++.+
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~-----F~n-----------~~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNG-----FDN-----------GAFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCceecc-----ccC-----------CCCCCCccceeeeecccchhheee
Confidence 567788999887 477776667899999999987652 111 112346789998876 5568999
Q ss_pred EeCCCeEEEEEecCC--Cccc---eeeeeecCc----CCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEec-C
Q 001178 427 AFTKHLIHLYTYQGS--NDLC---QSLEIDAHV----GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE-G 495 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~--~~~~---~~~~~~~h~----~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~-~ 495 (1131)
|+.||.|+||+--.. +..+ ....+.++. +.=.-++|-.... +|+++|+-+.|+||| ....++..+. +
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEeecccC
Confidence 999999999974322 1111 111222221 1113346666555 577777789999999 4444444443 4
Q ss_pred CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce---eEEecCCCce--EEEEEEccCCCE-EEEEeecCCCCceE
Q 001178 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS---RVDYDAPGLW--CTTMLYSADGSR-LFSCGTSKEGDSHL 569 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~--v~~~~~s~~g~~-l~~~~~~~~~~~~i 569 (1131)
...-|+++.-.. ..|+.+++|..||.|++||.+.... ......|... |..+.+.+.|-. |++++. +|.|
T Consensus 1207 s~t~vTaLS~~~-~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~----~G~I 1281 (1387)
T KOG1517|consen 1207 SSTLVTALSADL-VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ----DGDI 1281 (1387)
T ss_pred CCccceeecccc-cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----CCeE
Confidence 455677776543 3478999999999999999886544 2345556655 999999987755 888876 9999
Q ss_pred EEEeCCCCeeeE--EEeccc--CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc-----CCCCCcceEEE
Q 001178 570 VEWNESEGALKR--TYIGFR--KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-----GGLPSLPRLRF 640 (1131)
Q Consensus 570 ~iwd~~~~~~~~--~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~i~~v~~ 640 (1131)
++||++...... ....|. ++..+++..++....+++|+. +.|.||++.. +.+..+... .....+.|++|
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeee
Confidence 999998742222 222222 334889999999999999988 9999999864 333333221 22346799999
Q ss_pred cCCCCEEEEEECCCcEEEEecCCC
Q 001178 641 NKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 641 sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|..-++|+|+.|..|.||....+
T Consensus 1360 HP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cchhHhhhhccCCceEEEeecCCc
Confidence 999999999999999999987654
No 203
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.65 E-value=9.2e-13 Score=150.16 Aligned_cols=151 Identities=20% Similarity=0.283 Sum_probs=126.1
Q ss_pred EEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 001178 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHL 432 (1131)
Q Consensus 353 ~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~ 432 (1131)
+-++++.- .+++|+.-+.|.+|+....+.- ..+.||.+.|.++.|+-||+++++.|+|.+
T Consensus 139 ~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p-------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs 198 (967)
T KOG0974|consen 139 IGDSAEEL-YIASGSVFGEIIVWKPHEDNKP-------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRS 198 (967)
T ss_pred EeccCcEE-EEEeccccccEEEEeccccCCc-------------------ceecccCCceEEEEEccCCcEEEEEecCcc
Confidence 34556654 4889999999999998722211 137899999999999999999999999999
Q ss_pred EEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCcc-CeEEEeecccCCc
Q 001178 433 IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEA-PVYSVCPHQKENI 511 (1131)
Q Consensus 433 i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~-~v~~~~~~~~~~~ 511 (1131)
+++|++++++... ...-+|+++|+.++|.|. .++|++.|.+.++|+..+..+..+.+|.+ .++.++..+ +.
T Consensus 199 iRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~--~~ 270 (967)
T KOG0974|consen 199 IRLWPIDSREVLG--CTGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPI--GV 270 (967)
T ss_pred eeeeecccccccC--cccccccceeEEEEeccc----eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcC--Cc
Confidence 9999999988665 246789999999999998 49999999999999988888889988865 578887744 44
Q ss_pred cEEEEEecCCeEEEEeCCCC
Q 001178 512 HFIFSTAVDGKIKAWLYDNV 531 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~ 531 (1131)
..++|++.|+.+++|++...
T Consensus 271 ~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 271 IIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEeeccCcchhhhhhhcc
Confidence 78999999999999997653
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=1.4e-14 Score=142.62 Aligned_cols=237 Identities=16% Similarity=0.170 Sum_probs=180.4
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
-..+|+|.||++|++ .+|++.....|.||.......-. ..++++.|...|+++.|+|.++.|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 356899999999998 59999999999999987665221 2347889999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeE-----EecCCccCe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLF-----QFEGHEAPV 500 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~-----~~~~h~~~v 500 (1131)
+|+.|..-.||....+..-++...+..|+..++++.|+|.++ .+++||.-+.|.||-.+++.-. .-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999966555666667888999999999999999 7999999999999984443322 223567889
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeC-----CCC-------------ceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLY-----DNV-------------GSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~-----~~~-------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.++.|++.+ -++++|+.|+..+++.. +.. ....++....+++..+.|+|+|..|+..+.
T Consensus 150 ~sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 999998754 68999999999999853 221 112233356678999999999999999986
Q ss_pred CCCCceEEEEeCCCCe-eeEEEecccCCceEEEEEeCCCCEEEEEEcC
Q 001178 563 KEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 609 (1131)
+..+.+-|..... .+....... -+..++.|-.+ +.++.++.|
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~-lP~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQ-LPLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred ---CCceEEeecCCCchhccchhhcc-CCceeeEeecC-CceeecCCC
Confidence 8889888876554 233333222 35566666543 334444444
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.4e-14 Score=165.76 Aligned_cols=235 Identities=14% Similarity=0.130 Sum_probs=164.0
Q ss_pred CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCCccc
Q 001178 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLC 445 (1131)
Q Consensus 369 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~ 445 (1131)
+..|.|||....... .+..|...+.+.+|||||+.||.++.+ ..|.+||+.+++..
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~- 241 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK- 241 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-
Confidence 468999998765432 355778889999999999999988654 37999999887532
Q ss_pred eeeeeecCcCCeeEEEEecCCCceEEEE-EcCCCcEEEE--eCCCceeEEecCCccCeEEEeecccCCccEEEEE-ecCC
Q 001178 446 QSLEIDAHVGGVNDLAFSYPNKQLCIVT-CGDDKLIRVW--DLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST-AVDG 521 (1131)
Q Consensus 446 ~~~~~~~h~~~V~~l~~s~d~~~~~l~s-~s~d~~i~iw--d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg 521 (1131)
....+.+| ...++|+|||+. |+. .+.++.+.|| |..+..+..+..+...+....|+| +|+.|+.+ ..+|
T Consensus 242 ~l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g 314 (429)
T PRK01742 242 VVASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP--DGQSILFTSDRSG 314 (429)
T ss_pred EEecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC--CCCEEEEEECCCC
Confidence 22233344 447899999994 554 4568876666 555566677777777788888865 55665544 4678
Q ss_pred eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCC
Q 001178 522 KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1131)
Q Consensus 522 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 601 (1131)
...+|+++..........+.. ....|+|||+++++.+. ..+.+||+.+++........ ....+.|+|+|+
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNGI 384 (429)
T ss_pred CceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCCC
Confidence 888888765333222222322 45789999999988763 34777999888765333222 234578999999
Q ss_pred EEEEEEcCCcEEEEEc--CCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 602 RILAAGEDNQIKFWDM--DNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 602 ~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
+|+.++.++.+.+|.+ .++.....+..+.. .+..++|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 9999999998888875 35667777764433 5788899884
No 206
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.64 E-value=2.6e-14 Score=138.49 Aligned_cols=265 Identities=15% Similarity=0.246 Sum_probs=186.3
Q ss_pred ccccCCCcccceee--eccCCCcEEEEEEecCCC----cEEEEEcCCCeEEEEECCCCcccccccceeecccccccceec
Q 001178 329 ATWSLDDLPRAVAC--TMHQGSSVVSMDFHPFHH----TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQA 402 (1131)
Q Consensus 329 ~~~~~~~~~~~~~~--~~~h~~~V~~~~fspdg~----~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1131)
-+...++...+.+. .+.|.-+++.+-|.|+.+ .+||+.+ ..+|||.+...+...... ..+..
T Consensus 76 qiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~----------~~L~~ 143 (364)
T KOG0290|consen 76 QIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQ----------SVLNN 143 (364)
T ss_pred EEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehh----------hhhcc
Confidence 33444444444433 468999999999999863 3677754 489999997432211100 00111
Q ss_pred eeccCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 403 AIVKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 403 ~~~~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
..-..+..++++..|+. |-++|.+++-|-+..|||++++........+.+|...|.+++|...+.+ +++|.|.||.+|
T Consensus 144 ~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvR 222 (364)
T KOG0290|consen 144 NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVR 222 (364)
T ss_pred CcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEE
Confidence 12345678999999998 7889999999999999999998543334568899999999999998877 899999999999
Q ss_pred EEeCCC-c---eeEEecCCccCeEEEeecccCCccEEEEEecC-CeEEEEeCCCCce-eEEecCCCceEEEEEEccC-CC
Q 001178 482 VWDLSG-R---KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD-GKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSAD-GS 554 (1131)
Q Consensus 482 iwd~~~-~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~-g~ 554 (1131)
++|+.. . .+.+-.....+...++|+.. |-+++++-..| ..|.+.|++.... ...+..|...|+.++|.|. ..
T Consensus 223 mFDLR~leHSTIIYE~p~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~ 301 (364)
T KOG0290|consen 223 MFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSS 301 (364)
T ss_pred EEEecccccceEEecCCCCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCc
Confidence 999322 2 22222223567888888764 44677776655 4688899987654 4588899999999999996 46
Q ss_pred EEEEEeecCCCCceEEEEeCCCCe------eeEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEE
Q 001178 555 RLFSCGTSKEGDSHLVEWNESEGA------LKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKF 614 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i 614 (1131)
.+.+++. |.++-+||+.+.- ++..+. .++.|+.+.|++.. ..++.+.. +.+.+
T Consensus 302 hictaGD----D~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 302 HICTAGD----DCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred eeeecCC----cceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 6778875 8999999987532 222333 33478899999654 56666554 34443
No 207
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=9.1e-13 Score=145.04 Aligned_cols=334 Identities=14% Similarity=0.161 Sum_probs=206.4
Q ss_pred ceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEE
Q 001178 468 QLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTT 546 (1131)
Q Consensus 468 ~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 546 (1131)
.+++++-..++.|.|.| .+.+.+.++.........+.+ ++|++++++++.||.|.++|+.+.+...++.... ....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 34567778899999999 888888888765444344555 5677899999999999999999998777776544 4688
Q ss_pred EEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc------CCceEEEEEeCCCCEEEEE-EcCCcEEEEEcCC
Q 001178 547 MLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR------KKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDN 619 (1131)
Q Consensus 547 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~ 619 (1131)
+++++||++++++.. ..+.+.++|.++.+.++.+.... ...+.++..+|....++.. -+.+.|.+-|...
T Consensus 83 i~~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 999999999998865 27899999999999998876432 2246677778888855554 4558888889877
Q ss_pred CeEEEEEeccCCCCCcceEEEcCCCCEEEEE-ECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccc
Q 001178 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT-TADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1131)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1131)
.+.+........ .......|+|++++++++ .....|.++|..++.. ...+
T Consensus 160 ~~~~~~~~i~~g-~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-v~~i--------------------------- 210 (369)
T PF02239_consen 160 PKNLKVTTIKVG-RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-VALI--------------------------- 210 (369)
T ss_dssp SSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-EEEE---------------------------
T ss_pred ccccceeeeccc-ccccccccCcccceeeecccccceeEEEeeccceE-EEEe---------------------------
Confidence 654432222211 146789999999988765 4466888888766511 1000
Q ss_pred cccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecC
Q 001178 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS 778 (1131)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 778 (1131)
+... ..|......+- .|.
T Consensus 211 ----------------------------------------------~~g~---------------~p~~~~~~~~p-hp~ 228 (369)
T PF02239_consen 211 ----------------------------------------------DTGK---------------KPHPGPGANFP-HPG 228 (369)
T ss_dssp ----------------------------------------------E-SS---------------SBEETTEEEEE-ETT
T ss_pred ----------------------------------------------eccc---------------ccccccccccc-CCC
Confidence 0000 00111111110 010
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEE-EEEeCCeEE
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV-MSAGGGKVS 857 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l-a~~~dg~i~ 857 (1131)
.++++ +.+..+... ...+.+.+.
T Consensus 229 ------------------------------------------------------~g~vw--~~~~~~~~~~~~ig~~~v~ 252 (369)
T PF02239_consen 229 ------------------------------------------------------FGPVW--ATSGLGYFAIPLIGTDPVS 252 (369)
T ss_dssp ------------------------------------------------------TEEEE--EEEBSSSSEEEEEE--TTT
T ss_pred ------------------------------------------------------cceEE--eeccccceecccccCCccc
Confidence 01111 111222332 222345666
Q ss_pred EEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEE----eCCCcEEEEEeecceeEEeecccc-cCeeEEEEccCCCEE
Q 001178 858 LFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIG----MEDSTIQIYNVRVDEVKTKLKGHQ-KHITGLAFSTNLNIL 932 (1131)
Q Consensus 858 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g----~~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~s~dg~~l 932 (1131)
+|+..+++.++++....+. .-+..+| +++++.+. ...++|.++|.++.+.+..+.... ..+..+.|++||+.+
T Consensus 253 v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 253 VHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEV 330 (369)
T ss_dssp -STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred cchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEE
Confidence 8999999999999976666 7888899 88888877 556899999999998877775433 359999999999975
Q ss_pred EEEeC--CCcEEEEEcCCCceeeeee
Q 001178 933 VSSGS--DAQLIFWNTDTWEKRKSIA 956 (1131)
Q Consensus 933 ~s~~~--Dg~v~lwd~~~~~~~~~~~ 956 (1131)
..+.. ++.|.+||..+.+......
T Consensus 331 ~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 331 WVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCEEEEEECCCcEEEEEEE
Confidence 55444 3379999999988766554
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=1.1e-13 Score=159.21 Aligned_cols=256 Identities=13% Similarity=0.086 Sum_probs=180.7
Q ss_pred eccCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEecCC----CccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC
Q 001178 404 IVKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQGS----NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg-~~las~~~d~~i~vwd~~~~----~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 478 (1131)
.+..|...|..++.+++. .++++|+.||+|++||...- ...+...++.--..++.++.+.+.+. .+|.++.||
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence 366788889899888755 99999999999999998642 11222333443467899999999999 688889999
Q ss_pred cEEEEeCCC---ce-----eEEecCC-ccCeEEE-eecccCCccEEEEEecCCeEEEEeCCCCceeEEe--cCCCceEEE
Q 001178 479 LIRVWDLSG---RK-----LFQFEGH-EAPVYSV-CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--DAPGLWCTT 546 (1131)
Q Consensus 479 ~i~iwd~~~---~~-----~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~ 546 (1131)
.|++.++.- +. ......+ .+.+.++ ++........++.+..-+.|..||.+.......+ ....+.|++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 999998322 11 1111112 2334433 3433333347888899999999999887766543 344567999
Q ss_pred EEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCC---CEEEEEE--cCCcEEEEEcCCCe
Q 001178 547 MLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR---NRILAAG--EDNQIKFWDMDNVN 621 (1131)
Q Consensus 547 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~--~dg~i~iwd~~~~~ 621 (1131)
++.+|.+.+++.|.. .|.+.+||++-+.++..........+.-++.+|-. ...++++ ..+.|.+|++.+|.
T Consensus 1201 i~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred EEecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 999999999999986 89999999998888877765555567766666543 3444443 57889999999987
Q ss_pred EEEEEeccCCC-----------------CCcceEEEcCCCCEEEEEECCCcEEEEecCCCc
Q 001178 622 MLTSTEAEGGL-----------------PSLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 622 ~~~~~~~~~~~-----------------~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 665 (1131)
....+...... .....+.+...+..+.+|+.|..|+.||.....
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 76665433111 011223344446788999999999999987663
No 209
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=2.4e-13 Score=136.91 Aligned_cols=241 Identities=11% Similarity=0.194 Sum_probs=184.7
Q ss_pred CCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCc--EEEEEeecceeE
Q 001178 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDST--IQIYNVRVDEVK 910 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~--I~iwd~~~~~~~ 910 (1131)
...+..+.|..|...|..|+....++|+................|..+-|+. .++|..+.+.. +++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4556777899999999999966678888877655433334445577777765 46666665544 899998888777
Q ss_pred EeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE---eCCe
Q 001178 911 TKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN---HETQ 987 (1131)
Q Consensus 911 ~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~---~d~~ 987 (1131)
..+. ...+|.+|.++. ++|+++=.+. |+|||++.-+......... .+...+.++.+++.+.+|+.- +.|.
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~---~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTP---PNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccC---CCccceEeeccCCCCceEEecCCCCCce
Confidence 6665 346799999974 4666665554 9999999865444332221 122456677777777799973 4789
Q ss_pred EEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCc-EEEEECCCCceeeEecCCccccCCCCCCCCcccc
Q 001178 988 LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGS-IGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFP 1066 (1131)
Q Consensus 988 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1066 (1131)
|.+||+.+.+.+..+..| .+++-+++|++||.+|||+++.|+ |||+.+.+|+.+..++...+ .+..
T Consensus 155 V~l~d~~nl~~v~~I~aH---~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~----------~~~I 221 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAH---KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY----------PVSI 221 (391)
T ss_pred EEEEEcccceeeeEEEec---CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce----------eeEE
Confidence 999999999999998877 899999999999999999998887 89999999999999886442 3455
Q ss_pred EEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1067 LVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1067 ~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
..++|+| ++.+|++.|..++|.+|++....
T Consensus 222 ySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 222 YSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 6899999 66799999999999999998766
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.1e-14 Score=149.46 Aligned_cols=201 Identities=21% Similarity=0.205 Sum_probs=151.9
Q ss_pred eEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001178 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAI 957 (1131)
Q Consensus 878 ~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~ 957 (1131)
.+++|+. ++..|++|+.||++|+|+..+...+.....|.+.|.++.|||||++|++.+.| ..+||+..++......
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~-- 223 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK-- 223 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc--
Confidence 7899999 89999999999999999998888888888999999999999999999999999 8999999997432221
Q ss_pred ecCCCCCCCCceEEEEcCCC---cE-EEEE--eCCeEEEEeCCCccc--ceeeecCCCCCCCeEEEEEccCCCEEEEEec
Q 001178 958 QLPAGKLPVGETRVQFHSDQ---VR-LLVN--HETQLAIYDGSKMEC--IRQWVPQDVLSSPISSAAYSCNSQLIYATFT 1029 (1131)
Q Consensus 958 ~~~~~~~~~~v~~v~~s~d~---~~-l~~~--~d~~i~vwd~~~~~~--~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~ 1029 (1131)
.+ .........+.|+.|+ .+ +++. ..+.++.|++....- +..+.........|++++.|+||+++|.|+.
T Consensus 224 -t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 224 -TP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred -CC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 11 1222456778888777 33 3332 245666666543221 1111111111458999999999999999999
Q ss_pred CCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCC
Q 001178 1030 DGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSET 1096 (1131)
Q Consensus 1030 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~ 1096 (1131)
||.|.|++..+.+...-++.. |.. ....+.|+| +.+++++.+.|.+..+..++-.
T Consensus 302 dGsVai~~~~~lq~~~~vk~a---------H~~--~VT~ltF~P-dsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEA---------HLG--FVTGLTFSP-DSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CCcEEEEEeceeeeeEeehhh---------hee--eeeeEEEcC-CcCcccccccCCceeEEEEeec
Confidence 999999999888876555422 333 455899999 6689999999999999998763
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=1.5e-12 Score=143.30 Aligned_cols=321 Identities=11% Similarity=0.105 Sum_probs=202.2
Q ss_pred cEE-EEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCc
Q 001178 512 HFI-FSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS 590 (1131)
Q Consensus 512 ~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 590 (1131)
+++ ++-..++.|.+.|.++.+....+......-..+.|+|||+++++++. ++.|.++|+.+++.+.++... ..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G--~~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVG--GN 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-S--SE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecC--CC
Confidence 344 45667899999999998888888766555556789999999999875 789999999999999998753 35
Q ss_pred eEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccCC-----CCCcceEEEcCCCCEEEEEECC-CcEEEEecCC
Q 001178 591 AGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGG-----LPSLPRLRFNKEGNLLVVTTAD-QGIKILANAD 663 (1131)
Q Consensus 591 v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~i~~v~~sp~~~~l~~~~~d-g~i~iw~~~~ 663 (1131)
...+++++||++++++. .++.+.++|..+.+.++.+...+. ...+..+..+|....+++.-.| +.|.+.|..+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 67799999999998765 689999999999999988765422 2245566667777655554443 5555555433
Q ss_pred CchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcc
Q 001178 664 GLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKP 743 (1131)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~ 743 (1131)
...
T Consensus 160 ~~~----------------------------------------------------------------------------- 162 (369)
T PF02239_consen 160 PKN----------------------------------------------------------------------------- 162 (369)
T ss_dssp SSC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 200
Q ss_pred eeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcc
Q 001178 744 WELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLL 823 (1131)
Q Consensus 744 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 823 (1131)
+.. +..
T Consensus 163 --------------------------------------~~~-------~~i----------------------------- 168 (369)
T PF02239_consen 163 --------------------------------------LKV-------TTI----------------------------- 168 (369)
T ss_dssp --------------------------------------EEE-------EEE-----------------------------
T ss_pred --------------------------------------cce-------eee-----------------------------
Confidence 000 000
Q ss_pred cccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeC----CCCCeeEEEEeCC---------CCc
Q 001178 824 MTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS----PPPASTFLAFHPQ---------DNN 888 (1131)
Q Consensus 824 ~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~~---------~~~ 888 (1131)
..........|+|++++++++. ++.|-++|..+++.+..+.. |..+...+ .+|. .+.
T Consensus 169 -------~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 169 -------KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGY 240 (369)
T ss_dssp -------E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSS
T ss_pred -------cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccc
Confidence 0123344678888998887765 57899999988887776542 22233222 1221 122
Q ss_pred EEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEE----eCCCcEEEEEcCCCceeeeeeeecCCCCC
Q 001178 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS----GSDAQLIFWNTDTWEKRKSIAIQLPAGKL 964 (1131)
Q Consensus 889 ~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~----~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~ 964 (1131)
..++.-....+.+|+..+.+.+..+....++ .-+..+|+++++.+. ...++|.++|.++.+....... ..+
T Consensus 241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~--~~~-- 315 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP--GPG-- 315 (369)
T ss_dssp SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH--HHT--
T ss_pred eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec--cCC--
Confidence 2222222335667888888999999887666 888889999999987 4458999999999653322211 111
Q ss_pred CCCceEEEEcCCCcEEEEE---eCCeEEEEeCCCcccceeee
Q 001178 965 PVGETRVQFHSDQVRLLVN---HETQLAIYDGSKMECIRQWV 1003 (1131)
Q Consensus 965 ~~~v~~v~~s~d~~~l~~~---~d~~i~vwd~~~~~~~~~~~ 1003 (1131)
..+..+.|++||+.+.++ .++.|.+||..+.+.+..+.
T Consensus 316 -~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 316 -KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp ---EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred -CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 238899999999988775 24589999999999988775
No 212
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=7.4e-15 Score=150.71 Aligned_cols=199 Identities=13% Similarity=0.201 Sum_probs=159.4
Q ss_pred eEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec-
Q 001178 837 PCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK- 914 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~- 914 (1131)
.+++|+++|..+++++ ||++|||+..+...+.....|...|.++.||| |+++|++-+.| ..+||+..++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999988888888888999999999999 99999999999 99999999997666554
Q ss_pred -ccccCeeEEEEccCC-----CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCe
Q 001178 915 -GHQKHITGLAFSTNL-----NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQ 987 (1131)
Q Consensus 915 -~h~~~V~~l~~s~dg-----~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~ 987 (1131)
........+.|+.|+ ...+....-+.|+.|++..+..-.......... ....+++++.++||++++.|+ ||.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-ccCcceeEEEcCCCcEEEEeccCCc
Confidence 233346678888887 334444555678888887655421111111111 115899999999999999986 999
Q ss_pred EEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 001178 988 LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 988 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
|.|++..+.+++.-... .|...|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehh--hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999998888776543 4588999999999999999999999999987754
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=9.1e-14 Score=137.01 Aligned_cols=259 Identities=13% Similarity=0.129 Sum_probs=193.4
Q ss_pred CCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCc---eeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEee-c
Q 001178 832 AEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNF---KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-V 906 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~---~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~-~ 906 (1131)
...+|+|.+|++|+..+|++. ...|.||..... +...++..|...|+.++|+| ....|++++.|..-++|... .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence 367899999999999999998 568999987654 46788899999999999999 78889999999999999983 3
Q ss_pred c--eeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee-eeecCCCCCCCCceEEEEcCCCcEEEEE
Q 001178 907 D--EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI-AIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1131)
Q Consensus 907 ~--~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~-~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 983 (1131)
+ +....+..|....+++.|+|.++.+|+||.-+.|.||-++..+.=-.. .+..+ ..+.|.++.|+|.+-+|++|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkP---irStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKP---IRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCc---cccceeeeeccCCcceeccc
Confidence 3 455667779999999999999999999999999999988763321000 01111 22789999999999999997
Q ss_pred e-CCeEEEEeCC-----C-------------cccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcee
Q 001178 984 H-ETQLAIYDGS-----K-------------MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLR 1044 (1131)
Q Consensus 984 ~-d~~i~vwd~~-----~-------------~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1044 (1131)
+ |+..||+..- + |+++.++... .+.|..+.|+|+|..|+-.+.|..+.+=|.......
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~---ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS---GGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC---CCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 5 9998888632 1 2333333322 678999999999999999999999999998776532
Q ss_pred eEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCccccccccCCCCCCC
Q 001178 1045 CRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTD 1111 (1131)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w~~~~p~~~~~~ 1111 (1131)
.........| -+++.|.. ++.++.++.|+.=.++...++. .|..+...+-++-
T Consensus 242 v~~~~~~~lP-----------~ls~~~is--e~~vv~ag~~c~P~lf~~~~~~-~l~~~~~ld~p~~ 294 (361)
T KOG1523|consen 242 VQSVATAQLP-----------LLSVSWIS--ENSVVAAGYDCGPVLFVTDEEG-GLSFARRLDAPKA 294 (361)
T ss_pred ccchhhccCC-----------ceeeEeec--CCceeecCCCCCceEEEecccc-ceeeehhcCCccc
Confidence 2211111122 13466665 3568888888766666665554 5877765554444
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=1e-13 Score=159.36 Aligned_cols=177 Identities=14% Similarity=0.172 Sum_probs=134.7
Q ss_pred EeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce-------eEEecCCCceEEEEEEccCCCE
Q 001178 483 WDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-------RVDYDAPGLWCTTMLYSADGSR 555 (1131)
Q Consensus 483 wd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-------~~~~~~~~~~v~~~~~s~~g~~ 555 (1131)
|+..|..+..+..|...|..++.+. +++.++++||.||+|++|+.+.... ..++...+..+..+.+.+.++.
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCccceEeehhhhccccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 8899999999999999999888764 5558999999999999999865322 2344445678999999999999
Q ss_pred EEEEeecCCCCceEEEEeCCCC-------eeeEEEecccCCc-eEEEEEeCC-C-CEEEEEEcCCcEEEEEcCCCeEEEE
Q 001178 556 LFSCGTSKEGDSHLVEWNESEG-------ALKRTYIGFRKKS-AGVVQFDTT-R-NRILAAGEDNQIKFWDMDNVNMLTS 625 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~~-------~~~~~~~~~~~~~-v~~~~~s~~-~-~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1131)
+|+++. ||.|.+.++.-. ...+....+..+. +..-+|... + ..++.+..-+.|..||.........
T Consensus 1113 ~Av~t~----DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1113 FAVSTK----DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred EEEEcC----CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 999976 999999887641 1122222222222 233333322 2 3677788889999999998877777
Q ss_pred EeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 626 TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 626 ~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++..-..+.|++++.+|.+.+++.|+..|.+.+||+.-+
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 666655568999999999999999999999999998654
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=6.2e-12 Score=124.37 Aligned_cols=240 Identities=13% Similarity=0.187 Sum_probs=167.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC-----CCcEEEEe-
Q 001178 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD-----DKLIRVWD- 484 (1131)
Q Consensus 411 ~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~-----d~~i~iwd- 484 (1131)
...+++|+.|...+++|..+| .+||+++--+... ...-+.+.+.-+...--.+.+.|+-|+. -+.|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 345699999999999998777 8999987522211 1111222221111111233323333332 25799999
Q ss_pred CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCC-CCceeEEecCCC--ceEEEEEEccCCCEEEEEee
Q 001178 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD-NVGSRVDYDAPG--LWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~ 561 (1131)
...+++.++. ...+|.++++.. ..|++. .++.|.+|... +.+....+.... ....+++-..+...||.-+.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r----~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRR----DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcC----CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 8888988886 678899998843 234333 46899999887 444444333322 23444444444455555443
Q ss_pred cCCCCceEEEEeCCCCee--eEEEecccCCceEEEEEeCCCCEEEEEEcCCc-EEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 562 SKEGDSHLVEWNESEGAL--KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ-IKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
..|.|++-|+...+. ...+..|.. .|.|++.+-+|..+|+++..|+ |||||..+|+.+..+........|.++
T Consensus 157 ---k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 157 ---KTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred ---ccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 468999999876554 355566554 9999999999999999999998 699999999999998877666789999
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|||+..+|+++++.|+++|+.+...
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999998764
No 216
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=5.1e-14 Score=146.28 Aligned_cols=294 Identities=13% Similarity=0.122 Sum_probs=217.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|.+.|..+-|+..|..|++|+.|..|.+||...++..... ..||...|....|.|.....-+++++.||.+++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 47799999999999999999999999999999999988754322 3689999988889886544479999999999998
Q ss_pred e--CCCcee--EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec---CCCc---eEEEEEEccCC
Q 001178 484 D--LSGRKL--FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---APGL---WCTTMLYSADG 553 (1131)
Q Consensus 484 d--~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~---~v~~~~~s~~g 553 (1131)
. .++.+. ..+..|.++|.-++..|... ..|++++.|+.+.-.|++.......+. .+.. ....++..|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 7 444443 45668999999998876443 678999999999999998765544322 1222 56788899876
Q ss_pred C-EEEEEeecCCCCceEEEEeCCCCee------eEEEecc-----cCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC--
Q 001178 554 S-RLFSCGTSKEGDSHLVEWNESEGAL------KRTYIGF-----RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN-- 619 (1131)
Q Consensus 554 ~-~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-- 619 (1131)
. .+++++. +..+++||.+.-.. +..+..+ ..-.|++++|+.++.-++++..|-.|++++-..
T Consensus 294 t~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 294 TNEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred ccccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 6 6677765 77889998764221 2333222 223588999998888888888899999996433
Q ss_pred C----------eEEEE-EeccCCCCCcceEEE-cCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccc
Q 001178 620 V----------NMLTS-TEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKV 687 (1131)
Q Consensus 620 ~----------~~~~~-~~~~~~~~~i~~v~~-sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1131)
| ..+.. .++|.+...|..+-| .|...++++|+.=|.|.||+-.++ +.++.+++....+.
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVN-------- 440 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVN-------- 440 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhcccceEe--------
Confidence 2 12222 566766667888865 678899999999999999998887 77777776554322
Q ss_pred cCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeee
Q 001178 688 PGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELT 747 (1131)
Q Consensus 688 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~ 747 (1131)
++-|. +.--.+++.+.|..|++|...
T Consensus 441 -------CLEpH---------------------------P~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 441 -------CLEPH---------------------------PHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred -------ccCCC---------------------------CCCchhhccCCccceeeecCC
Confidence 33333 223457888999999999863
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.4e-12 Score=130.62 Aligned_cols=286 Identities=15% Similarity=0.180 Sum_probs=185.8
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC-CEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG-NFIG 425 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg-~~la 425 (1131)
...+..++|++--- -+|++..|-.|+|||-.....-. +-......|+|++|-|.+ +.|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceee
Confidence 34678899998443 37888999999999976622211 122345689999999964 5777
Q ss_pred EEeCCCeEEEEEecCCCcc-----------ceeeeeecCcCCeeEEEEecCCCceEEEEEc-CCCcEEEEe-CCCceeEE
Q 001178 426 VAFTKHLIHLYTYQGSNDL-----------CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRVWD-LSGRKLFQ 492 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~-----------~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s-~d~~i~iwd-~~~~~~~~ 492 (1131)
.|+..| |.+|........ .+...-.|| .+|++++|.+||. .+++++ .|..|.||| .+|..+.-
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 777655 999987432111 111223455 6899999999999 677776 577899999 66655544
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEE
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 572 (1131)
.....+.+.-+.|+| |+.+|++++-|+..++|+....-.........+.|...+|+|+|++|+.+... ...++-.
T Consensus 234 ~~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl 308 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSL 308 (445)
T ss_pred cccCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEE
Confidence 444567788899965 66799999999999999654443333333444589999999999998877631 2222221
Q ss_pred eC--CCCe-----------eeEEE------ec--ccCCceEEEEEeCCCCEEEEEEcCC--------cEEEEEcCCCeEE
Q 001178 573 NE--SEGA-----------LKRTY------IG--FRKKSAGVVQFDTTRNRILAAGEDN--------QIKFWDMDNVNML 623 (1131)
Q Consensus 573 d~--~~~~-----------~~~~~------~~--~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~iwd~~~~~~~ 623 (1131)
.. +.+. ++..+ .+ .-.+...+++|.|.|.++++.-..+ .|.+||....-.+
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 11 1110 00011 01 0134678899999999999865433 3667777654443
Q ss_pred EEEec-cCCCCCcceEEEcC---CCCEEEEEECCCcEEEEec
Q 001178 624 TSTEA-EGGLPSLPRLRFNK---EGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 624 ~~~~~-~~~~~~i~~v~~sp---~~~~l~~~~~dg~i~iw~~ 661 (1131)
..... ......-..++|+| ++.+|.++=..|.+.-|++
T Consensus 389 els~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 389 ELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 33211 11111245677776 6778888888888887775
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3.5e-13 Score=154.26 Aligned_cols=235 Identities=11% Similarity=0.086 Sum_probs=162.1
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC---CcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED---NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
+..|++||..... .+.+..+.. .+....|+|+|+.|+.++.+ ..|++||+.+++........+ ....++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECC
Confidence 4689999986544 445554433 78889999999999887643 469999998876543332222 245789999
Q ss_pred CCCEEEEEE-CCCcEEEEecC--CCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcccccc
Q 001178 643 EGNLLVVTT-ADQGIKILANA--DGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719 (1131)
Q Consensus 643 ~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~ 719 (1131)
||+.|+.+. .+|.+.||.+. ++. ...+
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~--~~~l------------------------------------------------ 287 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGT--PSQL------------------------------------------------ 287 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCC--eEee------------------------------------------------
Confidence 999888765 57876666442 220 0000
Q ss_pred CCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeee-cceeeEEeecC
Q 001178 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS-NGVQKLWKWNR 798 (1131)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~ 798 (1131)
..+...+....|+|||+.++..+. +|...+|+++.
T Consensus 288 --------------------------------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 288 --------------------------------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred --------------------------------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 002234557889999998887664 67888887654
Q ss_pred CCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCee
Q 001178 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPAST 878 (1131)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 878 (1131)
... .... + .+.. ....|+|||++|+..+...+.+||+.+++........ ...
T Consensus 324 ~~~--------------------~~~~--l--~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~ 375 (429)
T PRK01742 324 SGG--------------------GASL--V--GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDE 375 (429)
T ss_pred CCC--------------------CeEE--e--cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCC
Confidence 211 1000 0 1111 3468999999999887556777999988765433222 345
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEEEee--cceeEEeecccccCeeEEEEccC
Q 001178 879 FLAFHPQDNNIIAIGMEDSTIQIYNVR--VDEVKTKLKGHQKHITGLAFSTN 928 (1131)
Q Consensus 879 ~l~~s~~~~~~la~g~~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~s~d 928 (1131)
.+.|+| ++++|+.++.++.+.+|.+. +++.+..+.+|.+.+..++|||-
T Consensus 376 ~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 376 SPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 678999 89999999999999888864 57888889999999999999984
No 219
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.57 E-value=5.8e-10 Score=115.87 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=83.0
Q ss_pred CCCCeeEEEecCCCCEEEEEeC-CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC----cEEEEEeec
Q 001178 832 AEDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS----TIQIYNVRV 906 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg----~I~iwd~~~ 906 (1131)
.-+.|.++..++||++++++.+ ..|.+.|+.++.....-+...+-|+.++|+| +++++|.+--+| .|++||+.+
T Consensus 400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCC
Confidence 3456788999999999999984 7899999999988766666678899999999 999999987776 589999998
Q ss_pred ceeEEeecccccCeeEEEEccCCCEEEEEeC
Q 001178 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGS 937 (1131)
Q Consensus 907 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~ 937 (1131)
++...... ..+.=.+-+|.||+++|..-+.
T Consensus 479 ~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 479 GKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred CeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 88654433 3333466789999998776543
No 220
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.4e-11 Score=133.46 Aligned_cols=572 Identities=11% Similarity=0.119 Sum_probs=334.6
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
......|++|+-... ++|+|+.||.++|-.+.+...-.... -+...+...-..++.||.+.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEecccccccc
Confidence 445788999998887 59999999999999987654322100 0111111112236899999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEee
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCP 505 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~ 505 (1131)
+...+|.|.||-+-.|.-.... .-....+.|.+++|..||+ .++....||.|.|=...|..+.--.-...-...+.|
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchheccceee
Confidence 9999999999999887643211 1123456789999999999 678888888886655555554321111112234555
Q ss_pred cccCCccEEEEEecCCeEEEEeCCCCcee-------E----EecCCCceEEEEEE--------ccCCCEEEEEeecCCCC
Q 001178 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSR-------V----DYDAPGLWCTTMLY--------SADGSRLFSCGTSKEGD 566 (1131)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-------~----~~~~~~~~v~~~~~--------s~~g~~l~~~~~~~~~~ 566 (1131)
+ +|...++.+-..|.++++|....-.. . .+......|..+.| -||...++++-. +
T Consensus 165 s--~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----n 238 (1189)
T KOG2041|consen 165 S--EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----N 238 (1189)
T ss_pred c--ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----C
Confidence 3 45567777778899999986542111 1 11111223444444 246777888765 6
Q ss_pred ceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC---------CcEEEEEcCCCeEEEEEeccCCCCCcce
Q 001178 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED---------NQIKFWDMDNVNMLTSTEAEGGLPSLPR 637 (1131)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~i~~ 637 (1131)
|.+.+..-.+......+.. +-.+....|+++|..+++++.+ +.|.+|.. -|+.+.+++..+. .|+.
T Consensus 239 Gr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~It~ 313 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CITG 313 (1189)
T ss_pred ceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--eeee
Confidence 6776655443332223321 2256778999999999998754 34555553 4677777777765 7999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcccc
Q 001178 638 LRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTI 717 (1131)
Q Consensus 638 v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~ 717 (1131)
++|-..|-.++.+ .|+.|.+=++.... .+-.+ ...+. ..++.. .
T Consensus 314 lsWEg~gLriA~A-vdsfiyfanIRP~y-kWgy~---e~TvV--------------y~y~~~---------e-------- 357 (1189)
T KOG2041|consen 314 LSWEGTGLRIAIA-VDSFIYFANIRPEY-KWGYI---EETVV--------------YVYQKE---------E-------- 357 (1189)
T ss_pred eEEcCCceEEEEE-ecceEEEEeecccc-eEEEe---eeEEE--------------EEEccC---------C--------
Confidence 9998877666655 46777776654331 00000 00000 000000 0
Q ss_pred ccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeec
Q 001178 718 LNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWN 797 (1131)
Q Consensus 718 l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~ 797 (1131)
.-...|.+|+..+.....+ .-....++++..+.-.|+.-..++.+.-++.-
T Consensus 358 ------------------~p~y~i~Fwdtk~nek~vK-----------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~l 408 (1189)
T KOG2041|consen 358 ------------------LPQYGIMFWDTKTNEKTVK-----------TVTHFENMAFYREHCVLINRQDDGVIPEYSTL 408 (1189)
T ss_pred ------------------CcceEEEEEecccChhhhh-----------hhcceeehheecccEEEEeccccCCCcchhhh
Confidence 0002355666554221111 11223456666665556655666665443110
Q ss_pred CCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeC---CC
Q 001178 798 RTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMS---PP 874 (1131)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~---~~ 874 (1131)
. ..+ ......+-+.- |..+. ..-..|.-.-..-++.+++.++...+.+|.....+....+.+ +.
T Consensus 409 e----~~~---~~~~l~LCNSI-GT~lD-----~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rk 475 (1189)
T KOG2041|consen 409 E----NRS---RVYFLQLCNSI-GTSLD-----YKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRK 475 (1189)
T ss_pred h----ccc---ceEEEeeeccc-CCcCC-----CCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcc
Confidence 0 000 00000010000 11000 011122222223467788888888899998765444333322 11
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001178 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~ 954 (1131)
..- |+-| ..-+|..|+++. .. ..++.|..++|.+++.| .++|..+-..|.|.-+.+........
T Consensus 476 egr----~h~D---dtp~ga~d~~l~---ys----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~ 539 (1189)
T KOG2041|consen 476 EGR----FHGD---DTPEGAQDRTLE---YS----TKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNS 539 (1189)
T ss_pred ccc----ccCC---CCccchhhceee---cc----ceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeec
Confidence 111 3321 123455666552 11 34677889999999997 56899999999999999987443222
Q ss_pred eeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCC---CcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC
Q 001178 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGS---KMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD 1030 (1131)
Q Consensus 955 ~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~---~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d 1030 (1131)
.. ....+.+++..-....++.-+ -|.+.+.|+. +|..+..+... ....|+.+.|..|+..|++--+.
T Consensus 540 y~-------~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~--errDVWd~~Wa~dNp~llAlmeK 610 (1189)
T KOG2041|consen 540 YP-------VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTS--ERRDVWDYEWAQDNPNLLALMEK 610 (1189)
T ss_pred cc-------cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehh--hhhhhhhhhhccCCchHHhhhhh
Confidence 21 225778888888888887743 6777777776 34444433222 26789999999998877776666
Q ss_pred CcEEEEECC
Q 001178 1031 GSIGVFDAD 1039 (1131)
Q Consensus 1031 g~i~vwd~~ 1039 (1131)
-.++|++-.
T Consensus 611 trmyifrgn 619 (1189)
T KOG2041|consen 611 TRMYIFRGN 619 (1189)
T ss_pred ceEEEecCc
Confidence 677777643
No 221
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=8e-15 Score=161.66 Aligned_cols=216 Identities=16% Similarity=0.234 Sum_probs=156.3
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC-cEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK-LIRV 482 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~-~i~i 482 (1131)
++..|....+|++||-+.++|+.|+..|.|+++++.+|.... ...+|..+|+.+.=+.||.. .|.+++... ...+
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHH
Confidence 366788899999999999999999999999999999998655 56889999999999999984 233333333 5789
Q ss_pred Ee--CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe-cC---CCceEEEEEEccCCCEE
Q 001178 483 WD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-DA---PGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 483 wd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~---~~~~v~~~~~s~~g~~l 556 (1131)
|+ ..+...++|.+ -.++.|+.+. ..-+.|+.-....+||+++.....++ .. ....-+...|+|+.+++
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99 55666666653 3455665432 23334444467789999988776642 21 12233678899999887
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcc
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 636 (1131)
+- +| .+||.+..+.++.|..... ...-.|+|.|..++.-++ |||+++.+.++..+.-. -.
T Consensus 1246 ln-------dG--vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld----qc 1305 (1516)
T KOG1832|consen 1246 LN-------DG--VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD----QC 1305 (1516)
T ss_pred ee-------Cc--eeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCcccc----ce
Confidence 65 33 5799998888888775542 223469999999998776 99999998887765433 26
Q ss_pred eEEEcCCCCEEEE
Q 001178 637 RLRFNKEGNLLVV 649 (1131)
Q Consensus 637 ~v~~sp~~~~l~~ 649 (1131)
.+.|+..|..++.
T Consensus 1306 ~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYA 1318 (1516)
T ss_pred EEEeccCccchhh
Confidence 6788887876653
No 222
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.55 E-value=7.9e-11 Score=134.70 Aligned_cols=196 Identities=18% Similarity=0.207 Sum_probs=149.2
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCC---CEEEEEEcCCCCEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSI---SVSRVAWSPDGNFI 424 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~spdg~~l 424 (1131)
+.|....+.-+.+ .++.++.++.+.|||...+...... ..+... ...-+-++++.-++
T Consensus 88 ~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i------------------~~~er~~l~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 88 DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKI------------------QSDERCTLYSSLIIGDSAEELYI 148 (967)
T ss_pred ccccccchhhhcc-eEEEEEcCceEEEEecccCceehhc------------------CCCceEEEEeEEEEeccCcEEEE
Confidence 3444455565665 4788888999999999877655421 011111 12223457777899
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeE-EecCCccCeEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF-QFEGHEAPVYS 502 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~-~~~~h~~~v~~ 502 (1131)
++|+.-+.|.+|+....+ . ...+.||.+.|.++.|+.||+ +++++|+|+++|+|+ .+++.+. ..-+|+.+|+.
T Consensus 149 ~~gsv~~~iivW~~~~dn-~--p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDN-K--PIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred EeccccccEEEEeccccC-C--cceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 999999999999998332 1 125789999999999999999 899999999999999 6665554 66789999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC-CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
++|.+. .+++++.|-+.++|+....... .+..| ...+..++..++...+++++. |+.+++|+...
T Consensus 224 ~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 224 CCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNG 289 (967)
T ss_pred EEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhc
Confidence 999763 8999999999999976544333 44444 347899999999999999987 99999999754
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.1e-12 Score=147.26 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=156.1
Q ss_pred CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEEecCCCccce
Q 001178 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT---KHLIHLYTYQGSNDLCQ 446 (1131)
Q Consensus 370 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~ 446 (1131)
..|.+||.+...... +..+...+.+.+|||||+.||..+. +..|.+|++.+++.. .
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~ 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E
Confidence 378888887654321 3356678999999999999987643 457999999887532 2
Q ss_pred eeeeecCcCCeeEEEEecCCCceEEEEEcCCC--cEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEec-CCeE
Q 001178 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DGKI 523 (1131)
Q Consensus 447 ~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i 523 (1131)
+....+.+..++|+|||+. ++++.+.++ .|++||..+..+..+..+...+....|+| +|+.|+..+. ++..
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRP 311 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC--CCCEEEEEeCCCCCc
Confidence 2223334567899999995 333444444 58889955445555655555677778854 5677766654 4444
Q ss_pred EEE--eCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCC
Q 001178 524 KAW--LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1131)
Q Consensus 524 ~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 601 (1131)
.+| |+.++.. ..+...........|+|||++++..+. .++...|++||+.+++... +.... ......|+|||+
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~-~~g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG~ 386 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSS-NGGQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNGT 386 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEc-cCCCceEEEEECCCCCeEE-eCCCC--CCCCceECCCCC
Confidence 555 6655433 233334445667899999999988764 2335679999998886543 33211 234578999999
Q ss_pred EEEEEEcCCc---EEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 602 RILAAGEDNQ---IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 602 ~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
.|+.++.++. ++++++. +.....+..+.. .+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 9999887764 6777774 444444544332 577888887
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=2.3e-14 Score=147.88 Aligned_cols=278 Identities=16% Similarity=0.192 Sum_probs=213.8
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
-.-..+.++.+|++ ++.|+.-|.|-.+|+.+++...... -...|..+.|-.+.+++|++
T Consensus 130 FGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVA 188 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVA 188 (545)
T ss_pred cCCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhh
Confidence 35678899999996 6678889999999999998775321 23568899999999999988
Q ss_pred eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeec
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPH 506 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~ 506 (1131)
- .+.+.|||-.+- .+.+ +..| ..|..+.|.|.-- +|++++..|.++.-| ..|+.+..+..-.+.+..++-+
T Consensus 189 Q-K~y~yvYD~~Gt-ElHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 189 Q-KKYVYVYDNNGT-ELHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred h-hceEEEecCCCc-EEee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 4 567999997653 3432 3333 4689999999876 899999999999999 8899999998888888888876
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecc
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 586 (1131)
|-. ..+-+|...|+|.+|.....+.+..+..|.++|.++++.++|+|+++.+. |..+.|||++....+.++..
T Consensus 261 P~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t- 333 (545)
T KOG1272|consen 261 PYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT- 333 (545)
T ss_pred Ccc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-
Confidence 544 57889999999999999999999999999999999999999999999997 99999999998887776664
Q ss_pred cCCceEEEEEeCCCCEEEEEEcCCcEEEEE-cCCC--eEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCC
Q 001178 587 RKKSAGVVQFDTTRNRILAAGEDNQIKFWD-MDNV--NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 587 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd-~~~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
..+...+++|..| +++++....+.||. .-.+ ........|.....|..+.|.|-...|-+|...|.-.+.-...
T Consensus 334 -p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGs 410 (545)
T KOG1272|consen 334 -PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGS 410 (545)
T ss_pred -CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCC
Confidence 2256678888654 45555566799994 2221 2222222233334789999999877777776666555544333
Q ss_pred C
Q 001178 664 G 664 (1131)
Q Consensus 664 ~ 664 (1131)
|
T Consensus 411 G 411 (545)
T KOG1272|consen 411 G 411 (545)
T ss_pred C
Confidence 3
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=9.7e-13 Score=139.47 Aligned_cols=286 Identities=13% Similarity=0.127 Sum_probs=206.7
Q ss_pred eeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 340 ~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
+++.+++...-+.+..||||+|++|+|..--.|++||+..-.....+. -....|.-.-+|.
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-------------------lDae~V~feiLsD 104 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-------------------LDAEVVDFEILSD 104 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-------------------ccccceeEEEecc
Confidence 455678999999999999999999999999999999998755432110 1123455566666
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
|-..++.-..|.+|.+..--+ ... .+. -...-.+++++.-.-. |+.++....|+-.+ ..|+.+..|....+
T Consensus 105 D~SK~v~L~~DR~IefHak~G-~hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~ 176 (703)
T KOG2321|consen 105 DYSKSVFLQNDRTIEFHAKYG-RHY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSG 176 (703)
T ss_pred chhhheEeecCceeeehhhcC-eee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccc
Confidence 766666667788777654322 111 111 0112345566554443 34444445677778 88999988888889
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC------C-----ceEEEEEEccCCCEEEEEeecCCCCc
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------G-----LWCTTMLYSADGSRLFSCGTSKEGDS 567 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~-----~~v~~~~~s~~g~~l~~~~~~~~~~~ 567 (1131)
.++++.+++.. .+|++|+.+|.|.+||.+.......+... . ..|+++.|+.+|-.+++|.. .|
T Consensus 177 ~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G 250 (703)
T KOG2321|consen 177 ELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TG 250 (703)
T ss_pred cceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CC
Confidence 99999887644 58889999999999999876655433221 1 24999999999999999987 99
Q ss_pred eEEEEeCCCCeeeEEEecccCCceEEEEEeCCC--CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCC
Q 001178 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR--NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~ 645 (1131)
.+.+||+++.+++..-......+|..+.|.+.+ +.+++ .+...++|||-.+|+....+.... .++.+++-|++.
T Consensus 251 ~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~sG 326 (703)
T KOG2321|consen 251 SVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTS---DLNDFCFVPGSG 326 (703)
T ss_pred cEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccC---CcCceeeecCCc
Confidence 999999999888766554344467778886653 44444 455789999999999988876543 589999999999
Q ss_pred EEEEEECCCcEEEEecC
Q 001178 646 LLVVTTADQGIKILANA 662 (1131)
Q Consensus 646 ~l~~~~~dg~i~iw~~~ 662 (1131)
+++++-.++.+..|-+.
T Consensus 327 m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYIP 343 (703)
T ss_pred eEEEecCCCcceeEEcc
Confidence 99999998887777654
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.4e-12 Score=128.97 Aligned_cols=261 Identities=11% Similarity=0.098 Sum_probs=167.4
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
....|.+++|-|.+...++.+-.+-|.+|..+....... .++. ..++.... +......+|++|.|.+||
T Consensus 139 sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r-------~~~~--~s~~~~qv--l~~pgh~pVtsmqwn~dg 207 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR-------NIRM--MSTHHLQV--LQDPGHNPVTSMQWNEDG 207 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc-------cccc--ccccchhh--eeCCCCceeeEEEEcCCC
Confidence 456789999999877777777777899998754221100 0000 00111111 111223789999999999
Q ss_pred CEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEE
Q 001178 846 SYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGL 923 (1131)
Q Consensus 846 ~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 923 (1131)
..+++++ +..|.|||..++.++.......+.++-+.||| |+.+|..++-|+..++|+...........--.+.|...
T Consensus 208 t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqta 286 (445)
T KOG2139|consen 208 TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTA 286 (445)
T ss_pred CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeee
Confidence 9999998 67899999999988776655567799999999 88999999999999999655433333333345689999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCce-----------eeeee-------eecCCCCCCCCceEEEEcCCCcEEEEEeC
Q 001178 924 AFSTNLNILVSSGSDAQLIFWNTDTWEK-----------RKSIA-------IQLPAGKLPVGETRVQFHSDQVRLLVNHE 985 (1131)
Q Consensus 924 ~~s~dg~~l~s~~~Dg~v~lwd~~~~~~-----------~~~~~-------~~~~~~~~~~~v~~v~~s~d~~~l~~~~d 985 (1131)
.|+|+|++|..+... .=++|.+...+. ..... ..........++.+++|.|.|.+|++...
T Consensus 287 cWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 287 CWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred eecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 999999976544332 223443322110 00000 01111111267889999999999998532
Q ss_pred ---------CeEEEEeCCCcccceeeecCCCCCCCeEEEEEcc---CCCEEEEEecCCcEEEEECC
Q 001178 986 ---------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC---NSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 986 ---------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~---dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
..|.+||......+............-..++|.| +|.+|..+=..|.+.-|++.
T Consensus 366 g~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 366 GQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 3467788776554443322211123355677776 56677777677888888753
No 227
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.52 E-value=2.9e-08 Score=121.65 Aligned_cols=539 Identities=12% Similarity=0.097 Sum_probs=296.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEE----EecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLY----TYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vw----d~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 482 (1131)
...+.|.++.|-+|...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 445789999999999999999999999999 444432 21 1223456899999999999 5666666777776
Q ss_pred EeCCCc------------------------eeEEecC------------------------CccCeEEEeecccCCccEE
Q 001178 483 WDLSGR------------------------KLFQFEG------------------------HEAPVYSVCPHQKENIHFI 514 (1131)
Q Consensus 483 wd~~~~------------------------~~~~~~~------------------------h~~~v~~~~~~~~~~~~~l 514 (1131)
...+-. .-..|.| +...-..++| .+||.++
T Consensus 147 mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~yF 224 (928)
T PF04762_consen 147 MTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW--RGDGEYF 224 (928)
T ss_pred EeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE--CCCCcEE
Confidence 542111 1111111 1112233444 7888999
Q ss_pred EEEec---C---CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEec---
Q 001178 515 FSTAV---D---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG--- 585 (1131)
Q Consensus 515 ~s~s~---d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--- 585 (1131)
++.+. . ..+++|+-+ +.....-....+--.+++|.|.|+++|+... ......|..|. ++|-....|.-
T Consensus 225 AVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~ 301 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFD 301 (928)
T ss_pred EEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCC
Confidence 98864 2 578999865 3322222222333457899999999999875 33356677776 45554444443
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEE--EeccCCCCCcceEEEcCC-CCEEEEEECCCcEEEEecC
Q 001178 586 FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTS--TEAEGGLPSLPRLRFNKE-GNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~i~~v~~sp~-~~~l~~~~~dg~i~iw~~~ 662 (1131)
.....+..+.|++++..|+....|. |.+|...+-...-. +..... ..+..+.|+|. ...|.+.+.+|.+..+++.
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 2344788899999999999977665 99999888664332 332222 24556999994 4567777777887776653
Q ss_pred CCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccC-CCC
Q 001178 663 DGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDIS-DKT 741 (1131)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d-~~v 741 (1131)
-....-. ..+|+ ..-.++-.| .++
T Consensus 380 ~~v~~s~-------------------------~~~~~------------------------------D~g~vaVIDG~~l 404 (928)
T PF04762_consen 380 WDVSRSP-------------------------GSSPN------------------------------DNGTVAVIDGNKL 404 (928)
T ss_pred EEEEecC-------------------------CCCcc------------------------------CceEEEEEeCCeE
Confidence 2100000 00010 000011111 223
Q ss_pred cceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCC
Q 001178 742 KPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG 821 (1131)
Q Consensus 742 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 821 (1131)
.+-.+....-|.......+. ....|..++|++++..+++...||.+.+|.+............. .......
T Consensus 405 llTpf~~a~VPPPMs~~~l~----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~ 475 (928)
T PF04762_consen 405 LLTPFRRAVVPPPMSSYELE----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKL-----LSSISLD 475 (928)
T ss_pred EEecccccCCCchHhceEEc----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcch-----hhhcccc
Confidence 33222222222222112211 34689999999999999999999999999876543221000000 0000000
Q ss_pred cccccCCCCCCCCCeeEEEecCCCCEEEEEeC----CeEEEEECCCce---eEEEEeCCCCCeeEEEEeCCCCcEEEEEe
Q 001178 822 LLMTNDVPENAEDVVPCVALSKNDSYVMSAGG----GKVSLFNMMNFK---VMTTFMSPPPASTFLAFHPQDNNIIAIGM 894 (1131)
Q Consensus 822 ~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d----g~i~vwd~~~~~---~~~~~~~~~~~i~~l~~s~~~~~~la~g~ 894 (1131)
.............+..++|..+...++.... ..+.++++...+ ...........+..+...+ +...++.-.
T Consensus 476 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~ 553 (928)
T PF04762_consen 476 -SMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQT 553 (928)
T ss_pred -cccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEE
Confidence 0000001123556788899888877776653 458888874332 2333333345555555555 444466677
Q ss_pred CCCcEEEEEeeccee-EEeecccccCeeEEEEccCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEE
Q 001178 895 EDSTIQIYNVRVDEV-KTKLKGHQKHITGLAFSTNL--NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRV 971 (1131)
Q Consensus 895 ~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~s~dg--~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v 971 (1131)
.+|.+..++...... +..+..-...+..+.+.... ..++.-+..|.+++ +. . .+. ..+++.
T Consensus 554 ~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la-------~~~tSF 617 (928)
T PF04762_consen 554 NDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA-------SNCTSF 617 (928)
T ss_pred CCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---CC-E-----EEe-------cCCceE
Confidence 899888666544321 12232222222222222221 13444444444432 11 1 011 455666
Q ss_pred EEcCCCcEEEEEeCCeEEEEeCC-CcccceeeecCCC--CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcee
Q 001178 972 QFHSDQVRLLVNHETQLAIYDGS-KMECIRQWVPQDV--LSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLR 1044 (1131)
Q Consensus 972 ~~s~d~~~l~~~~d~~i~vwd~~-~~~~~~~~~~~~~--~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1044 (1131)
.+. +..+|++.....+++.++. ............. ....+.. --.|..|+++-....=-|..+..|.+.
T Consensus 618 ~v~-~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~---VERGsriVt~vp~~~~vVLQmPRGNLE 689 (928)
T PF04762_consen 618 AVT-DSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRR---VERGSRIVTAVPSDTSVVLQMPRGNLE 689 (928)
T ss_pred EEE-cCEEEEEecCceEEEEECcCchhhcccccCcccccccccccc---CccCCEEEEEeCCCceEEEEcCCCchh
Confidence 664 2333445567778988888 1111111111000 0112222 236778888875556666788777643
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.2e-13 Score=144.97 Aligned_cols=216 Identities=15% Similarity=0.235 Sum_probs=157.5
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.||++-|.|++|+.||.+|++|+.|-.+.|||.-..+.+..+ -.||.+.|.++.|-|......++||..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 57899999999999999999999999999999999876654432 3689999999999997666589999999999999
Q ss_pred eCCC-----------ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE----------EecCCCc
Q 001178 484 DLSG-----------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV----------DYDAPGL 542 (1131)
Q Consensus 484 d~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----------~~~~~~~ 542 (1131)
|++. .....+..|...|..++..+.. .+.+.+++.||+|+-+|++...... .+...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9331 2345566789999888876533 2789999999999999998732211 1111122
Q ss_pred eEEEEEEccCC-CEEEEEeecCCCCceEEEEeCCC--------Ce----------eeEEEe-ccc-------CC---ceE
Q 001178 543 WCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNESE--------GA----------LKRTYI-GFR-------KK---SAG 592 (1131)
Q Consensus 543 ~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~--------~~----------~~~~~~-~~~-------~~---~v~ 592 (1131)
...++.++|.. .+|++|+. +...++||.+. +. +++.|. +|- .. ..+
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred eeeeeeecCCCCceEEecCC----CchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence 56789999965 45666665 77888888421 11 122222 111 01 144
Q ss_pred EEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEE
Q 001178 593 VVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST 626 (1131)
Q Consensus 593 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1131)
-+.|+|+|.-|++.-..-.|+++|+..++.....
T Consensus 278 ~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 278 YVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred EEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 5889999987777666668999999887765543
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=9e-13 Score=138.68 Aligned_cols=117 Identities=21% Similarity=0.346 Sum_probs=105.3
Q ss_pred CCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEE
Q 001178 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~ 911 (1131)
...|...+|||||++||+.+ ||.++|||..+.+++..++..-+...|++||| |+++|++|++|.-|.||.+..++.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 34788899999999999999 99999999999999888887778899999999 99999999999999999999999999
Q ss_pred eecccccCeeEEEEcc-----------------------------------CC-------------CEEEEEeCCCcEEE
Q 001178 912 KLKGHQKHITGLAFST-----------------------------------NL-------------NILVSSGSDAQLIF 943 (1131)
Q Consensus 912 ~~~~h~~~V~~l~~s~-----------------------------------dg-------------~~l~s~~~Dg~v~l 943 (1131)
.-++|...|+.|+|.| ++ -++.++|.|-.+.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999982 01 24778899999999
Q ss_pred EEcCCCc
Q 001178 944 WNTDTWE 950 (1131)
Q Consensus 944 wd~~~~~ 950 (1131)
||+....
T Consensus 449 WDlteD~ 455 (636)
T KOG2394|consen 449 WDLTEDV 455 (636)
T ss_pred Eecchhh
Confidence 9998644
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=7e-12 Score=144.25 Aligned_cols=237 Identities=13% Similarity=0.056 Sum_probs=161.0
Q ss_pred CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEEecCCCccce
Q 001178 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT---KHLIHLYTYQGSNDLCQ 446 (1131)
Q Consensus 370 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~ 446 (1131)
..|.+||..+.... .+..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~--------------------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVR--------------------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcE--------------------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 47888888654432 24577889999999999999998764 468999999887632
Q ss_pred eeeeecCcCCeeEEEEecCCCceEEEEEcCCCc--EEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEec-CC--
Q 001178 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL--IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DG-- 521 (1131)
Q Consensus 447 ~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~--i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg-- 521 (1131)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||..+..+..+..+........|+| ||+.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~ 314 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSP 314 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcC--CCCEEEEEECCCCCC
Confidence 34556677889999999995 4456666655 6777865666677777766666777754 5677766653 33
Q ss_pred eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCC
Q 001178 522 KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1131)
Q Consensus 522 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 601 (1131)
.|++||+..+.... +......+....|+|||+.|+..... .+...|.+||..++.. +.+.. ...+....|+|||+
T Consensus 315 ~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~ 389 (435)
T PRK05137 315 QLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGR 389 (435)
T ss_pred eEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCC
Confidence 67788876654433 33334456678899999999987642 2346899999865543 33332 12456688999999
Q ss_pred EEEEEEcC------CcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 602 RILAAGED------NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 602 ~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
.|+..+.+ ..|+++|+..+.. ..+...+ .+...+|+|
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 88775542 3588888876554 3333222 356667776
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=6.8e-12 Score=144.10 Aligned_cols=238 Identities=16% Similarity=0.141 Sum_probs=156.6
Q ss_pred CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCCccce
Q 001178 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQ 446 (1131)
Q Consensus 370 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~ 446 (1131)
..|.+||...+... .+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 46899998654332 244567789999999999999988743 46999999887632
Q ss_pred eeeeecCcCCeeEEEEecCCCceEEEEEcCCC--cEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEe-cCCe-
Q 001178 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDGK- 522 (1131)
Q Consensus 447 ~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~- 522 (1131)
.+..+.+...+++|+|||+. ++++.+.++ .|++||..+..+..+..+.......+|+ ++++.|+..+ .+|.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~~ 316 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWA--PDGKSIYFTSDRGGRP 316 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEEC--CCCCEEEEEECCCCCc
Confidence 23334455668899999995 344555555 5999995555556666666555667775 4567776665 4454
Q ss_pred -EEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCC
Q 001178 523 -IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1131)
Q Consensus 523 -i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 601 (1131)
|.++++.+++... +..........+|+|||++++..+. .++...|.+||+.+++......+ . ......|+|+|+
T Consensus 317 ~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~~Lt~~--~-~~~~p~~spdG~ 391 (433)
T PRK04922 317 QIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVRTLTPG--S-LDESPSFAPNGS 391 (433)
T ss_pred eEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeEECCCC--C-CCCCceECCCCC
Confidence 6666665554332 2233344557899999999988753 23345799999988776532222 1 334568999999
Q ss_pred EEEEEEcC---CcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 602 RILAAGED---NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 602 ~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
+++..+.+ +.|++++...+ ....+..+.. .+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g--~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGR-VRQRLVSADG--EVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCC-ceEEcccCCC--CCCCCccCC
Confidence 88876653 45888888544 3444433222 466677776
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=5.5e-12 Score=144.17 Aligned_cols=222 Identities=14% Similarity=0.128 Sum_probs=147.0
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 482 (1131)
..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...|
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~I 266 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQI 266 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCceE
Confidence 3567789999999999999987643 469999999876432 3334455678999999995 3456778887777
Q ss_pred Ee--CCCceeEEecCCccCeEEEeecccCCccEEEEEe-cCCeEEEEeCC--CCceeEEecCCCceEEEEEEccCCCEEE
Q 001178 483 WD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDGKIKAWLYD--NVGSRVDYDAPGLWCTTMLYSADGSRLF 557 (1131)
Q Consensus 483 wd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~~wd~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 557 (1131)
|. ..+..+..+..+........|+ +||+.|+..+ .+|...+|.++ .+.. ..+...........|+|||++++
T Consensus 267 y~~d~~~~~~~~lt~~~~~~~~~~wS--pDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 267 YTVNADGSGLRRLTQSSGIDTEPFFS--PDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEECCCCCcEECCCCCCCCcCeEEc--CCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEE
Confidence 76 5566667776666656667775 4567766555 35666777654 3322 22222333345678999999999
Q ss_pred EEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCC---cEEEEEcCCCeEEEEEeccCCCCC
Q 001178 558 SCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN---QIKFWDMDNVNMLTSTEAEGGLPS 634 (1131)
Q Consensus 558 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1131)
..+.. .+...|++||+.+++....... .......|+|+++.|+.++.++ .+++.+. ++.....+..+.+ .
T Consensus 344 ~~s~~-~g~~~I~v~d~~~g~~~~lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~ 416 (427)
T PRK02889 344 YISRV-GGAFKLYVQDLATGQVTALTDT---TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--D 416 (427)
T ss_pred EEEcc-CCcEEEEEEECCCCCeEEccCC---CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--C
Confidence 87642 2245799999988875443322 1335678999999888876543 3555566 3544444443322 4
Q ss_pred cceEEEcC
Q 001178 635 LPRLRFNK 642 (1131)
Q Consensus 635 i~~v~~sp 642 (1131)
+...+|+|
T Consensus 417 ~~~p~wsp 424 (427)
T PRK02889 417 VREPSWGP 424 (427)
T ss_pred CCCCccCC
Confidence 67777876
No 233
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.9e-12 Score=137.24 Aligned_cols=262 Identities=12% Similarity=0.193 Sum_probs=195.7
Q ss_pred CccceEEEEeecCCceEEEeee-cceeeEEeecCCCCCCCCccceee---ece----------------eecCCCCcccc
Q 001178 766 SASKVARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAV---APQ----------------HWQPSNGLLMT 825 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~---~~~----------------~w~~~~~~~~~ 825 (1131)
+....+.+..+|||.++++.|. .-.|++||+..-....+....+.. .+. -+....|....
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 5667788999999999998887 678999998765433222111111 000 01111121111
Q ss_pred cCCCCCCCCCeeEEEec-CCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEe
Q 001178 826 NDVPENAEDVVPCVALS-KNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV 904 (1131)
Q Consensus 826 ~~~~~~~~~~i~~l~~s-~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~ 904 (1131)
..+ ...-..|+++ |...++++|+...|+-++++.|..+..+....+.+.++..++ -..+||+|+.+|.|..||.
T Consensus 130 ~RI----P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 130 TRI----PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred eec----CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecc
Confidence 111 2223345553 455667777788899999999999999998889999999999 8889999999999999999
Q ss_pred ecceeEEeec------cccc-----CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEE
Q 001178 905 RVDEVKTKLK------GHQK-----HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF 973 (1131)
Q Consensus 905 ~~~~~~~~~~------~h~~-----~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 973 (1131)
.+...+..+. .|.+ .|+++.|+.||-.+++|..+|.|.|||+.+.+ ++....+....++..+.|
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~-----pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK-----PLLVKDHGYELPIKKLDW 279 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-----ceeecccCCccceeeecc
Confidence 8765554443 3434 39999999999999999999999999999854 344455556688999999
Q ss_pred cCC--CcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 001178 974 HSD--QVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1131)
Q Consensus 974 s~d--~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~ 1041 (1131)
.+. +..+++.+...++|||-.+|+....+.+. ..+..+|+-|++.++++|-+++.+-.|-+...
T Consensus 280 ~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt----~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 280 QDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT----SDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred cccCCCceEEecchHHhhhcccccCCceeecccc----CCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 766 55677777888999999999998887764 56999999999999999999988888876643
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=7e-11 Score=117.03 Aligned_cols=238 Identities=17% Similarity=0.250 Sum_probs=152.7
Q ss_pred EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEE-EEc------CCcEEEEE
Q 001178 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILA-AGE------DNQIKFWD 616 (1131)
Q Consensus 544 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~------dg~i~iwd 616 (1131)
..+++|+.|...++++. +.-.++|+..--+....-..+.. .+..+.+--..++++. ||. .+.+.|||
T Consensus 8 ~lsvs~NQD~ScFava~-----~~Gfriyn~~P~ke~~~r~~~~~-G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVAT-----DTGFRIYNCDPFKESASRQFIDG-GFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccCCceEEEEe-----cCceEEEecCchhhhhhhccccC-chhhhhHhhhhceEEEecCCCCCCCCCceEEEEe
Confidence 45689999999888886 55578888764222111111111 1221212122345554 332 35799999
Q ss_pred cCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecc
Q 001178 617 MDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTI 696 (1131)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1131)
-...+++..+.... +|.++.+.++ .+++. ..+.|.+|...+..+..+.++....
T Consensus 82 D~k~~~i~el~f~~---~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~N-------------------- 135 (346)
T KOG2111|consen 82 DLKERCIIELSFNS---EIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSN-------------------- 135 (346)
T ss_pred cccCcEEEEEEecc---ceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccC--------------------
Confidence 77777777776654 6899999875 34433 4679999998866555444332111
Q ss_pred cccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEee
Q 001178 697 TPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT 776 (1131)
Q Consensus 697 sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 776 (1131)
|. ...+++-.
T Consensus 136 -Pk---------------------------------------------------------------------GlC~~~~~ 145 (346)
T KOG2111|consen 136 -PK---------------------------------------------------------------------GLCSLCPT 145 (346)
T ss_pred -CC---------------------------------------------------------------------ceEeecCC
Confidence 11 11111111
Q ss_pred cCCceEEEeee-cceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CC
Q 001178 777 NSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GG 854 (1131)
Q Consensus 777 ~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg 854 (1131)
.+...|+.-+. -|.+++-++...... ...+-..|...|.|++++.+|..+|+++ .|
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~~----------------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKPN----------------------APSIINAHDSDIACVALNLQGTLVATASTKG 203 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCcC----------------------CceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence 12222332222 366666655432221 0011126999999999999999999999 67
Q ss_pred e-EEEEECCCceeEEEEeC--CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001178 855 K-VSLFNMMNFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1131)
Q Consensus 855 ~-i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~ 906 (1131)
+ |||||..+|+.+.++.. ....|.+++||| +..+||++++.|++.|+.+..
T Consensus 204 TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 204 TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 7 99999999999999873 345799999999 999999999999999999875
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.47 E-value=7.2e-10 Score=122.99 Aligned_cols=209 Identities=16% Similarity=0.218 Sum_probs=136.2
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCC-ceeEEE---Ee----------CCCCCeeEEEEeCCCCcEEEEEe-CC
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMN-FKVMTT---FM----------SPPPASTFLAFHPQDNNIIAIGM-ED 896 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~-~~~~~~---~~----------~~~~~i~~l~~s~~~~~~la~g~-~d 896 (1131)
.....++++|++++|+++. +|.|.++++.. +..... +. .......++.|+| +++++++.. ..
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~ 165 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGA 165 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCC
Confidence 3445788999999999887 78899999876 433222 21 1234578999999 777666554 44
Q ss_pred CcEEEEEeecce--eE--Eeec-ccccCeeEEEEccCCCEEEEEe-CCCcEEEEEcC--CCceeeeeeeecC-CCCC-CC
Q 001178 897 STIQIYNVRVDE--VK--TKLK-GHQKHITGLAFSTNLNILVSSG-SDAQLIFWNTD--TWEKRKSIAIQLP-AGKL-PV 966 (1131)
Q Consensus 897 g~I~iwd~~~~~--~~--~~~~-~h~~~V~~l~~s~dg~~l~s~~-~Dg~v~lwd~~--~~~~~~~~~~~~~-~~~~-~~ 966 (1131)
..|++|+++... +. ..+. .....-..++|+||++++.... .+++|.++++. .+........... .... ..
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence 579999997654 21 2222 2334468899999999876655 47889999998 4432222222222 1111 13
Q ss_pred CceEEEEcCCCcEEEEEe--CCeEEEEeCCC--cc--cceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEEC-
Q 001178 967 GETRVQFHSDQVRLLVNH--ETQLAIYDGSK--ME--CIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDA- 1038 (1131)
Q Consensus 967 ~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~--~~--~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~- 1038 (1131)
....++++|||++|.++. .+.|.+|+++. +. .+..+... ......++|+|+|++|+++. .++.|.+|++
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~---G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG---GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES---SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC---CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 678999999999999874 67899999942 32 23333322 45589999999999999988 5578999976
Q ss_pred -CCCceeeE
Q 001178 1039 -DSLRLRCR 1046 (1131)
Q Consensus 1039 -~~~~~~~~ 1046 (1131)
++|.+...
T Consensus 323 ~~tG~l~~~ 331 (345)
T PF10282_consen 323 PDTGKLTPV 331 (345)
T ss_dssp TTTTEEEEE
T ss_pred CCCCcEEEe
Confidence 46665433
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=7.4e-12 Score=142.84 Aligned_cols=222 Identities=11% Similarity=0.079 Sum_probs=144.6
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEc--CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
..+...+.+.+|||||++++.+.. .+..|.+||+.+|+... +....+.+...+|||||
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSPDG 254 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEECCCC
Confidence 346678999999999997554432 24579999998876432 11222334568999999
Q ss_pred CEEEEE-eCCC--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc-CCCcEEEE--eCCCceeEEecC
Q 001178 422 NFIGVA-FTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRVW--DLSGRKLFQFEG 495 (1131)
Q Consensus 422 ~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s-~d~~i~iw--d~~~~~~~~~~~ 495 (1131)
+.|+.. +.+| .|.+||+++++.. .+..+...+....|+|||+. |+..+ .++...|| |..+.....+..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~~~lt~ 328 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAPQRITW 328 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCeEEeec
Confidence 988865 3344 5889999887532 24444556889999999994 54444 34444555 555544555554
Q ss_pred CccCeEEEeecccCCccEEEEEecC---CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEE
Q 001178 496 HEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 572 (1131)
+........|+ ++|+.|+..+.+ ..|.+||++++.... +.. ........|+|||++|+..+..+ +...+.++
T Consensus 329 ~~~~~~~~~~S--pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~-~~~~l~~~ 403 (429)
T PRK03629 329 EGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQG-MGSVLNLV 403 (429)
T ss_pred CCCCccCEEEC--CCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCC-CceEEEEE
Confidence 44445566665 566777665543 358889988765443 222 12244678999999999987532 24468888
Q ss_pred eCCCCeeeEEEecccCCceEEEEEeC
Q 001178 573 NESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
++ +|...+.+.++.. .+...+|+|
T Consensus 404 ~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 404 ST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EC-CCCCeEECccCCC-CcCCcccCC
Confidence 87 4555666665443 667777876
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=1e-11 Score=126.31 Aligned_cols=272 Identities=12% Similarity=0.172 Sum_probs=193.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEc-CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGC-GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
....|++++|--|++.=+..+. .+..+............. .|++. .......+|..++.. || .|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~-dg-~L 118 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA-DG-TL 118 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc-CC-EE
Confidence 5568888888877764444454 566677777666555432 23332 234556677777665 33 56
Q ss_pred EEEeCCCeEEEEEecCCCccc-eeeeeecCcCCeeEEEEecCCCceEEEEEcCC--CcEEEEe-CCCceeEEec------
Q 001178 425 GVAFTKHLIHLYTYQGSNDLC-QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD--KLIRVWD-LSGRKLFQFE------ 494 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~-~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d--~~i~iwd-~~~~~~~~~~------ 494 (1131)
++|-.+|.+.+|..+.+..-. ....+..+ ..+..+.-++...+ .+++||.. ..+.||| ...+.+..-+
T Consensus 119 itc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~ 196 (412)
T KOG3881|consen 119 ITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDR 196 (412)
T ss_pred EEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence 677889999999998543111 11123323 45777777776665 67779998 8899999 5554444332
Q ss_pred -CCccC--eEEEeecccCCccEEEEEecCCeEEEEeCCCCcee-EEecCCCceEEEEEEccCCCEEEEEeecCCCCceEE
Q 001178 495 -GHEAP--VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1131)
Q Consensus 495 -~h~~~--v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 570 (1131)
+-.-+ ++++.|.+..+...|++++.-+.+++||.+.+... ..+.....+++++...|+|++++++.. .+.+.
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~ 272 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLA 272 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhh
Confidence 12223 34556665544689999999999999999876544 467777889999999999999999976 88999
Q ss_pred EEeCCCCeeeEE-EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 571 EWNESEGALKRT-YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 571 iwd~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
.+|.+.++.... +.+.. +.+.++..+|..+++++++-|+.+||+|+.+.+++....... .++++.+.+
T Consensus 273 ~FD~r~~kl~g~~~kg~t-Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLKGIT-GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred eecccCceeeccccCCcc-CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 999999998887 55544 489999999999999999999999999999977766554433 345555544
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.2e-11 Score=141.46 Aligned_cols=225 Identities=17% Similarity=0.140 Sum_probs=144.0
Q ss_pred eeccCCCcEEEEEEecCCCcEEEEEcCC--CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGD--GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 342 ~~~~h~~~V~~~~fspdg~~llasg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
....+...+.+.+|||||++++++...+ ..|.+||+.+++... +....+.+.+.+|||
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SP 249 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWSP 249 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECC
Confidence 3446778899999999999744443322 469999999886542 222334567899999
Q ss_pred CCCEEEE-EeCCCeEEEEEec--CCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEec
Q 001178 420 DGNFIGV-AFTKHLIHLYTYQ--GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFE 494 (1131)
Q Consensus 420 dg~~las-~~~d~~i~vwd~~--~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~ 494 (1131)
||+.|+. .+.++...||.+. ++. .. .+..|.+.+....|+|||+. +++++..++...||. ..+.....+.
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCceEEEe
Confidence 9998874 5677776776654 433 22 34556666778899999995 233444456667776 4444443333
Q ss_pred CCccCeEEEeecccCCccEEEEEecCC---eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 495 GHEAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
.+........|+ ++|++|+..+.++ .|.+||+.++....... ........|+|||+.|+..+.. .+...+++
T Consensus 325 ~~g~~~~~~~~S--pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~-~g~~~l~~ 399 (427)
T PRK02889 325 FTGSYNTSPRIS--PDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQ-GGRSVLAA 399 (427)
T ss_pred cCCCCcCceEEC--CCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEec-CCCEEEEE
Confidence 222333345664 5667887766554 69999998766543222 2234678999999999988753 23456777
Q ss_pred EeCCCCeeeEEEecccCCceEEEEEeC
Q 001178 572 WNESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
.+. ++...+.+..+. +.+...+|+|
T Consensus 400 ~~~-~g~~~~~l~~~~-g~~~~p~wsp 424 (427)
T PRK02889 400 VSS-DGRIKQRLSVQG-GDVREPSWGP 424 (427)
T ss_pred EEC-CCCceEEeecCC-CCCCCCccCC
Confidence 776 455555554322 2556667776
No 239
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.44 E-value=3.2e-13 Score=139.53 Aligned_cols=232 Identities=14% Similarity=0.200 Sum_probs=190.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCc
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR 488 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 488 (1131)
...-..+.++.+|++|+.|+..|.|-.+|..++.... ++. -...|.++.|..+.+ + +.....+.++|||..|.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~-~AVAQK~y~yvYD~~Gt 201 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--F-FAVAQKKYVYVYDNNGT 201 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--H-HHhhhhceEEEecCCCc
Confidence 3456679999999999999999999999999976433 332 345699999998887 3 44456789999999999
Q ss_pred eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCce
Q 001178 489 KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 489 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 568 (1131)
.+..++.| .+|..+.|-|.. -+|++++..|.++.-|+.+++....+....+.+..+.-+|-+..+-+|.. .|+
T Consensus 202 ElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 99998865 468888886544 57888899999999999999988888888888999999998888888775 999
Q ss_pred EEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEE
Q 001178 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLV 648 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~ 648 (1131)
|.+|.....+++..+..|.+ +|.++++.++|.++++.+.|..++|||++....+.+..... ....+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Ccccccccccc-cee
Confidence 99999999998888888776 99999999999999999999999999999887766665422 56788888765 344
Q ss_pred EEECCCcEEEEe
Q 001178 649 VTTADQGIKILA 660 (1131)
Q Consensus 649 ~~~~dg~i~iw~ 660 (1131)
. +....+.||.
T Consensus 350 ~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 350 L-SYGDHVQIWK 360 (545)
T ss_pred e-ecCCeeeeeh
Confidence 4 4445788996
No 240
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.1e-11 Score=142.35 Aligned_cols=226 Identities=14% Similarity=0.114 Sum_probs=145.0
Q ss_pred eeeeccCCCcEEEEEEecCCCcEEEEEcC--CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCG--DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 340 ~~~~~~h~~~V~~~~fspdg~~llasg~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
......+...+.+.+|||||++++.+... +..|.+||+.+++... +..+.+...+.+|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~~ 255 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPSF 255 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCceE
Confidence 33444577889999999999964444322 3469999998876532 2233344567899
Q ss_pred cCCCCEEEE-EeCCC--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc-CCCc--EEEEeCCCceeE
Q 001178 418 SPDGNFIGV-AFTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDKL--IRVWDLSGRKLF 491 (1131)
Q Consensus 418 spdg~~las-~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s-~d~~--i~iwd~~~~~~~ 491 (1131)
||||+.|+. .+.++ .|.+||+.+++.. .+..|.......+|+|||+. ++.++ .++. |.++|..+....
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSAE 329 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCeE
Confidence 999998764 44554 5999999887632 34556556678999999994 44443 4554 666664444344
Q ss_pred EecCCccCeEEEeecccCCccEEEEEecCC---eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCce
Q 001178 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 568 (1131)
.+..+.......+|+ ++|+.|+..+.++ .|.+||+.++... .+. +........|+|||++++..+.. .+...
T Consensus 330 ~lt~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~-~g~~~ 404 (433)
T PRK04922 330 RLTFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE-GGRGV 404 (433)
T ss_pred EeecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec-CCceE
Confidence 443333344456775 4667777655433 6899999776554 232 22234567999999999887753 34567
Q ss_pred EEEEeCCCCeeeEEEecccCCceEEEEEeC
Q 001178 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
|++++.. +...+.+..+. +.+...+|+|
T Consensus 405 L~~~~~~-g~~~~~l~~~~-g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTD-GRVRQRLVSAD-GEVREPAWSP 432 (433)
T ss_pred EEEEECC-CCceEEcccCC-CCCCCCccCC
Confidence 9999885 44444444322 2455566665
No 241
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.43 E-value=1.1e-11 Score=130.77 Aligned_cols=252 Identities=12% Similarity=0.120 Sum_probs=165.0
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE-----cCCCC
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW-----SPDGN 422 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-----spdg~ 422 (1131)
..+....++-.|+++..-- ...+++|+...+..+.. + +....+++. .-.|=+| .|+|-
T Consensus 124 g~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~-p------------i~k~~y~gt--~P~cHdfn~~~a~~~g~ 186 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSK-P------------IDKREYKGT--SPTCHDFNSFTATPKGL 186 (636)
T ss_pred cceeeccccCCCCEEEEec--CCeEEEEEccCcchhcc-c------------hhhhcccCC--CCceecccccccCCCCc
Confidence 3566666777777754433 34789999886544321 1 111122222 2233333 35677
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeec--CcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCe
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDA--HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPV 500 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~--h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v 500 (1131)
-|..|-.-|.|.+.|....+ +.+.+.... ....|+|+.|-|.+.. .++.+-.+|.++++|. .+....
T Consensus 187 dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~---------~~~~~~ 255 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDK---------EIVCGA 255 (636)
T ss_pred ceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeec---------cccccC
Confidence 78888888999999876632 222111112 2468999999997776 6777778999999984 111122
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCC-CCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYD-NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 579 (1131)
+..++..-.++..+.... |... +...+..+......|...+|+|||++||+++. ||.++|+|..+.++
T Consensus 256 t~p~~~~~k~~~~f~i~t-------~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILT-------SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQEL 324 (636)
T ss_pred CCCcccccCCCCeeEEee-------eeccccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHH
Confidence 222222222223332221 1111 11333334444557999999999999999987 99999999998887
Q ss_pred eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc
Q 001178 580 KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1131)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1131)
+..++..-+ ...|++|+|||++|++|++|.-|.||.+..++.+..- ++|...|..++|.
T Consensus 325 lg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG--qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 325 LGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG--QGHKSWVSVVAFD 383 (636)
T ss_pred HHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec--cccccceeeEeec
Confidence 776666555 7899999999999999999999999999988877654 4555588888887
No 242
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=3.2e-10 Score=121.05 Aligned_cols=252 Identities=13% Similarity=0.181 Sum_probs=164.5
Q ss_pred ceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCC-CCcEEE
Q 001178 813 PQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQ-DNNIIA 891 (1131)
Q Consensus 813 ~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~-~~~~la 891 (1131)
+.+|+.+++......... .... ++..|+.|..+.|--..+.+.+|++.+.+.+.. +.|...|+.+.+||. ....+|
T Consensus 107 ~~v~~vet~~~~s~~q~k-~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vA 183 (566)
T KOG2315|consen 107 VLVYNVETGVQRSQIQKK-MQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVA 183 (566)
T ss_pred eeeeeeccceehhheehh-hhcC-cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEE
Confidence 456777775443322221 2222 689999998877766789999999987443322 235678999999993 234454
Q ss_pred E-----EeCCCcEEEEEeecceeEEee---cccccCeeEEEEccCCCE---EEEEeCC---------CcEEEEEcCCCce
Q 001178 892 I-----GMEDSTIQIYNVRVDEVKTKL---KGHQKHITGLAFSTNLNI---LVSSGSD---------AQLIFWNTDTWEK 951 (1131)
Q Consensus 892 ~-----g~~dg~I~iwd~~~~~~~~~~---~~h~~~V~~l~~s~dg~~---l~s~~~D---------g~v~lwd~~~~~~ 951 (1131)
+ ++.-+.|+||.......-..+ .-....=..+.|++-|.- |++..-| .++++.++++...
T Consensus 184 vyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~ 263 (566)
T KOG2315|consen 184 VYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV 263 (566)
T ss_pred EEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE
Confidence 3 344567999987632211110 001122345677776653 2333334 3688888873221
Q ss_pred eeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe---CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 001178 952 RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH---ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 952 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
.+.... .++|.++.|+|+++-+++.. --.+.|||++ +..+..+. .++-+++-|+|.|++|+.++
T Consensus 264 ----~V~L~k---~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-----egpRN~~~fnp~g~ii~lAG 330 (566)
T KOG2315|consen 264 ----SVPLLK---EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-----EGPRNTAFFNPHGNIILLAG 330 (566)
T ss_pred ----EEecCC---CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-----CCCccceEECCCCCEEEEee
Confidence 122221 27999999999998877743 5679999987 44444433 45788999999999999888
Q ss_pred ---cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEec------CCcEEEEecCC
Q 001178 1029 ---TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLT------DGSVKVIEPSE 1095 (1131)
Q Consensus 1029 ---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~------Dg~v~iW~~~~ 1095 (1131)
.-|.|-|||+.+.+++..+.... +..+.|+| ||.+|+|++. |+.++||+...
T Consensus 331 FGNL~G~mEvwDv~n~K~i~~~~a~~--------------tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 331 FGNLPGDMEVWDVPNRKLIAKFKAAN--------------TTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred cCCCCCceEEEeccchhhccccccCC--------------ceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecC
Confidence 44899999999988887776322 33589999 5667776665 78899999853
No 243
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.40 E-value=2.6e-07 Score=113.42 Aligned_cols=449 Identities=14% Similarity=0.185 Sum_probs=256.8
Q ss_pred CCEEEEEEcCCCCEEEEEeC--CC--eEEEEEecCCCccceeeeee-----cCcCCeeEEEEecCCCceEEEEEcCCCcE
Q 001178 410 ISVSRVAWSPDGNFIGVAFT--KH--LIHLYTYQGSNDLCQSLEID-----AHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 410 ~~V~~~~~spdg~~las~~~--d~--~i~vwd~~~~~~~~~~~~~~-----~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 480 (1131)
..+...+|.+....+.++.. .. .|.+..............+. ...+.|.++.|.+|.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 46777888886654433332 22 23444333322122222332 2346799999999998 57777778888
Q ss_pred EEE----eCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCC-----------------------Cce
Q 001178 481 RVW----DLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-----------------------VGS 533 (1131)
Q Consensus 481 ~iw----d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-----------------------~~~ 533 (1131)
.+. |.....+.....-...|.+++|+| |...|+..+.++++.+-+-+- ++.
T Consensus 100 ~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 100 ILVREDPDPDEDEIEIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EEEEccCCCCCceeEEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcc
Confidence 888 544444444444567899999966 447888888888887653110 000
Q ss_pred eEEecC------------------------CCceEEEEEEccCCCEEEEEeecCC-C-CceEEEEeCCCCeeeEEEeccc
Q 001178 534 RVDYDA------------------------PGLWCTTMLYSADGSRLFSCGTSKE-G-DSHLVEWNESEGALKRTYIGFR 587 (1131)
Q Consensus 534 ~~~~~~------------------------~~~~v~~~~~s~~g~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~~ 587 (1131)
...|.+ ....-..++|..||.++|+.+.... + ...+++|+.+ |.+..+-.. .
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~-v 255 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP-V 255 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc-C
Confidence 000100 1223467889999999998875332 2 4789999965 766554442 2
Q ss_pred CCceEEEEEeCCCCEEEEEEc---CCcEEEEEcCCCeEEEEEecc--CCCCCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 588 KKSAGVVQFDTTRNRILAAGE---DNQIKFWDMDNVNMLTSTEAE--GGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 588 ~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
.+--.+++|-|.|+++++... ...|.+|.-+. -....+... .....|..+.|++|+..||+...|. |.+|-..
T Consensus 256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 256 DGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred CCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 334556899999999988654 45677777543 332223222 2334789999999999999987665 9999865
Q ss_pred CCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCc
Q 001178 663 DGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTK 742 (1131)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~ 742 (1131)
+-.
T Consensus 334 NYH----------------------------------------------------------------------------- 336 (928)
T PF04762_consen 334 NYH----------------------------------------------------------------------------- 336 (928)
T ss_pred CCE-----------------------------------------------------------------------------
Confidence 541
Q ss_pred ceeeecccCCceeEEEEcCCCCCCccceEEEEeecCC-ceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCC
Q 001178 743 PWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG-IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG 821 (1131)
Q Consensus 743 ~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 821 (1131)
|-+. +.+.++ ....+..+.|+|.. ..|.....+|.+..+++. |+...+
T Consensus 337 -WYLK--------qei~~~----~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------~~v~~s 385 (928)
T PF04762_consen 337 -WYLK--------QEIRFS----SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA------------------WDVSRS 385 (928)
T ss_pred -EEEE--------EEEEcc----CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE------------------EEEEec
Confidence 0000 000000 11122235566543 335555555666655432 111100
Q ss_pred cccccCCCCCCCCCeeEEEecC-CCCEEEEEeCCeEEEEECCCcee-----EEEEeCCCCCeeEEEEeCCCCcEEEEEeC
Q 001178 822 LLMTNDVPENAEDVVPCVALSK-NDSYVMSAGGGKVSLFNMMNFKV-----MTTFMSPPPASTFLAFHPQDNNIIAIGME 895 (1131)
Q Consensus 822 ~~~~~~~~~~~~~~i~~l~~s~-dg~~la~~~dg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~~~~~la~g~~ 895 (1131)
. ..+| |...+++.++.++.+-.+..... ...+. -...|.+++|++ ++..+|+-..
T Consensus 386 ~-----------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~ 446 (928)
T PF04762_consen 386 P-----------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTS 446 (928)
T ss_pred C-----------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEEC
Confidence 0 0112 22234444455677766654322 22333 246799999999 6666889999
Q ss_pred CCcEEEEEeecceeE--------Eeec----------ccccCeeEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeee
Q 001178 896 DSTIQIYNVRVDEVK--------TKLK----------GHQKHITGLAFSTNLNILVSSGSD---AQLIFWNTDTWEKRKS 954 (1131)
Q Consensus 896 dg~I~iwd~~~~~~~--------~~~~----------~h~~~V~~l~~s~dg~~l~s~~~D---g~v~lwd~~~~~~~~~ 954 (1131)
||.|.+|........ ..+. .-...+..++|..+...++....+ ..+.++++...+....
T Consensus 447 d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 526 (928)
T PF04762_consen 447 DGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSAS 526 (928)
T ss_pred CCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCcee
Confidence 999999986543211 1111 123457888998887776666554 5788888744322111
Q ss_pred eeeecCCCCCCCCceEEEEcCCCc-EEEEEeCCeEEEEeCCCc
Q 001178 955 IAIQLPAGKLPVGETRVQFHSDQV-RLLVNHETQLAIYDGSKM 996 (1131)
Q Consensus 955 ~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~d~~i~vwd~~~~ 996 (1131)
..... .....+..+...++.. .++-..+|.+..++....
T Consensus 527 ~~~~~---~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 527 VESST---EVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred EEEEe---ccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 11111 1113444555555555 344456888887666543
No 244
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.6e-09 Score=117.86 Aligned_cols=235 Identities=14% Similarity=0.178 Sum_probs=159.8
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCc------------cceeeeeecCcCCeeEEEEecCCCceEEEEE
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND------------LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC 474 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~------------~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~ 474 (1131)
.......|++|+....++|+|+.||.++|-.+.+... +....++.||.+.|.-+.|+.+.+ .|-|.
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtS 89 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTS 89 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--ccccc
Confidence 4456789999999999999999999999998865321 112236789999999999998888 68899
Q ss_pred cCCCcEEEEe-CCCceeEEec--CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc
Q 001178 475 GDDKLIRVWD-LSGRKLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA 551 (1131)
Q Consensus 475 s~d~~i~iwd-~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 551 (1131)
..+|.|.||- ..|.-...+. ...+.|.+++|+ .+|..+...-.||.|.+=.++.. .+.--...+.....+.|++
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn--~dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg~~l~hv~ws~ 166 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN--LDGTKICIVYEDGAVIVGSVDGN-RIWGKELKGQLLAHVLWSE 166 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEc--CCCcEEEEEEccCCEEEEeeccc-eecchhcchheccceeecc
Confidence 9999999998 6665544332 234567888884 56677888888888766555432 2221122233456788999
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCCCe-------eeEEEecc---cCCceEEEEE--------eCCCCEEEEEEcCCcEE
Q 001178 552 DGSRLFSCGTSKEGDSHLVEWNESEGA-------LKRTYIGF---RKKSAGVVQF--------DTTRNRILAAGEDNQIK 613 (1131)
Q Consensus 552 ~g~~l~~~~~~~~~~~~i~iwd~~~~~-------~~~~~~~~---~~~~v~~~~~--------s~~~~~l~~~~~dg~i~ 613 (1131)
|.+.++.+-. .|.+.++|.+..- +.....+. ....+..+.| -|+.+.++++...|.+.
T Consensus 167 D~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 167 DLEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred cHHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 9988877655 7889999865321 10111100 0112333433 35778999999999988
Q ss_pred EEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC
Q 001178 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
+-.-.+......+... -.+..+.|+++|..|++++.+
T Consensus 243 iMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 243 IMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred hhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCc
Confidence 8765543332233222 157888999999999988765
No 245
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=4.1e-11 Score=137.87 Aligned_cols=225 Identities=14% Similarity=0.085 Sum_probs=147.7
Q ss_pred eeeccCCCcEEEEEEecCCCcEEEEEc--CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 341 ACTMHQGSSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 341 ~~~~~h~~~V~~~~fspdg~~llasg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
.....|...|.+.+|||||++++.+.. .+..|.+||+.+++... +..+.+.+.+.+||
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~~~~S 254 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFAPRFS 254 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccCcEEC
Confidence 334467889999999999997554432 24689999998876532 33455677889999
Q ss_pred CCCCEEEE-EeCCCe--EEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc-CC--CcEEEEeCCCceeEE
Q 001178 419 PDGNFIGV-AFTKHL--IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DD--KLIRVWDLSGRKLFQ 492 (1131)
Q Consensus 419 pdg~~las-~~~d~~--i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s-~d--~~i~iwd~~~~~~~~ 492 (1131)
|||+.|+. .+.++. |.+||+.++... .+..+.+.....+|+|||+. ++..+ .+ ..|++||..+.....
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~~~~~ 328 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGSNPRR 328 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCCCeEE
Confidence 99998764 455554 777788876532 35556666788999999995 44433 33 368888866666666
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecC---CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCC--c
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGD--S 567 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~--~ 567 (1131)
+..+...+....|+ ++|+.|+..+.+ ..|.+||+....... +. ....+....|+|||+.|+..+...... .
T Consensus 329 lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~~~-lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 329 ISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGERI-LT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred eecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCceEe-cc-CCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 65555556667775 456777766543 367888876544322 22 223467889999999998876432221 4
Q ss_pred eEEEEeCCCCeeeEEEecccCCceEEEEEeC
Q 001178 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
.++++|+..+.. ..+.. ...+...+|+|
T Consensus 405 ~L~~~dl~g~~~-~~l~~--~~~~~~p~Wsp 432 (435)
T PRK05137 405 KLYTVDLTGRNE-REVPT--PGDASDPAWSP 432 (435)
T ss_pred eEEEEECCCCce-EEccC--CCCccCcccCC
Confidence 788888866544 33332 22345556665
No 246
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=5.4e-11 Score=121.05 Aligned_cols=244 Identities=10% Similarity=0.149 Sum_probs=180.4
Q ss_pred CCCCEEEEEEcCCCC--EEEEEeCCCeEEEEEecCCCcccee---eeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001178 408 SSISVSRVAWSPDGN--FIGVAFTKHLIHLYTYQGSNDLCQS---LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1131)
Q Consensus 408 h~~~V~~~~~spdg~--~las~~~d~~i~vwd~~~~~~~~~~---~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 482 (1131)
....|+.++|.-|++ .|...+.|..+.........+.... .....-.++|..++.. || .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 346788888887665 4555556777777777665543321 1233456677777765 44 4899999999999
Q ss_pred EeCC-----CceeEEecCCccCeEEEeecccCCccEEEEEecC--CeEEEEeCCCCceeEEecCC---------CceEEE
Q 001178 483 WDLS-----GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD--GKIKAWLYDNVGSRVDYDAP---------GLWCTT 546 (1131)
Q Consensus 483 wd~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~~wd~~~~~~~~~~~~~---------~~~v~~ 546 (1131)
|... ...+..+..+ ..+..+.-++ ....++++|+.. ..+.+||++...+++.-... .-++++
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~-~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTD-TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCC-CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9933 3344444433 3444454433 233577779998 88999999988665533221 126789
Q ss_pred EEEccC--CCEEEEEeecCCCCceEEEEeCCCCe-eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEE
Q 001178 547 MLYSAD--GSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1131)
Q Consensus 547 ~~~s~~--g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1131)
+.|.+. ...+++++. -+++++||.+.++ ++..|.-.. .++.++...|+++++++|..-|.+..||++.++..
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E-~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLE-NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEecccc-CcceeeeecCCCcEEEEecccchhheecccCceee
Confidence 999988 888999986 8899999998754 566666544 48999999999999999999999999999999887
Q ss_pred EE-EeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 624 TS-TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 624 ~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.. +.... +.|.++..+|.++++++++-|..+||+|+.+.
T Consensus 283 g~~~kg~t--Gsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 283 GCGLKGIT--GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ccccCCcc--CCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 66 44333 37999999999999999999999999999885
No 247
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.38 E-value=4.9e-09 Score=109.18 Aligned_cols=143 Identities=11% Similarity=0.116 Sum_probs=114.0
Q ss_pred CCCCCeeEEEecCCCCEEEEEe-CC-eEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce
Q 001178 831 NAEDVVPCVALSKNDSYVMSAG-GG-KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1131)
Q Consensus 831 ~~~~~i~~l~~s~dg~~la~~~-dg-~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~ 908 (1131)
++...|+-..+..+++-++.|. || .+-|||..+++..+. ...-+.|.++..++ +|++++++.....+.++|++++.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCC
Confidence 4566677778888888888887 66 799999998876544 44567899999999 89999999999999999999998
Q ss_pred eEEeecccccCeeEEEEccCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDA----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 909 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
....-+...+-|+..+|+|+++++|-+--+| .|+++|+.+++.-.. ..+. ..-.+-+|.||+++|..
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v---TT~t----a~DfsPaFD~d~ryLYf 505 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV---TTPT----AYDFSPAFDPDGRYLYF 505 (668)
T ss_pred eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe---cCCc----ccccCcccCCCCcEEEE
Confidence 7766666778899999999999999987776 689999998664221 1222 23456789999998875
No 248
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.38 E-value=3.8e-11 Score=119.83 Aligned_cols=343 Identities=13% Similarity=0.221 Sum_probs=217.4
Q ss_pred eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEE-cCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001178 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD-MDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1131)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i 656 (1131)
.+++.+.|+.+ .++....-|..+-+++.++|.++++|- .+.++.-..+... ...+++++.+.++...|++|-.+|++
T Consensus 15 ~ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-MPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-CCCCceEeeeeccceEEEEEEecceE
Confidence 34556677665 666666677778899999999999995 4445544444332 23368999999999999999999999
Q ss_pred EEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccc
Q 001178 657 KILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLED 736 (1131)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 736 (1131)
.-+.+..........
T Consensus 93 tefs~sedfnkm~~~----------------------------------------------------------------- 107 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFL----------------------------------------------------------------- 107 (404)
T ss_pred EEEEhhhhhhhcchh-----------------------------------------------------------------
Confidence 888765432111100
Q ss_pred cCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceee
Q 001178 737 ISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHW 816 (1131)
Q Consensus 737 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 816 (1131)
+.| ..|...+..+.|+-.-.++++.+.|..+. |.-..
T Consensus 108 -----r~~-------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e------------------ 144 (404)
T KOG1409|consen 108 -----KDY-------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE------------------ 144 (404)
T ss_pred -----hhh-------------------hhhhcceeeEEecCCceeEEEeccccceE-EEeec------------------
Confidence 000 22778888888888888888888886553 22111
Q ss_pred cCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEE--CCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEE
Q 001178 817 QPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFN--MMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 893 (1131)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd--~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g 893 (1131)
.|..+-... ......++.+.-. +...|. .|.|.+-. ......+.++.+|.+.+.+++|.+ ...+|.+|
T Consensus 145 ---~~~~lg~Y~---~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg 215 (404)
T KOG1409|consen 145 ---SGNRLGGYN---FETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSG 215 (404)
T ss_pred ---cCCcccceE---eeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEec
Confidence 011000000 0011111111111 333444 45555443 345677888999999999999999 88999999
Q ss_pred eCCCcEEEEEeecce-eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec-------------
Q 001178 894 MEDSTIQIYNVRVDE-VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL------------- 959 (1131)
Q Consensus 894 ~~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~------------- 959 (1131)
..|..|.+||+--.+ ....+.+|.+.|..+...+--+.|++++.||.|.+|+.+....+.......
T Consensus 216 ~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn 295 (404)
T KOG1409|consen 216 ASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWN 295 (404)
T ss_pred cccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHH
Confidence 999999999997553 345788999999999999888999999999999999988644322111100
Q ss_pred ------------CCCC---CCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccce----eeecCCCCCCCeEEEEEccC
Q 001178 960 ------------PAGK---LPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIR----QWVPQDVLSSPISSAAYSCN 1020 (1131)
Q Consensus 960 ------------~~~~---~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~v~~i~~s~d 1020 (1131)
..++ ....+...+-+....+...+..-.+|+-|.-...... .+...+.....|+++.+-.+
T Consensus 296 ~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqet 375 (404)
T KOG1409|consen 296 FRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQET 375 (404)
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhh
Confidence 0000 0012222222333333333444445555432111110 01111122468999999999
Q ss_pred CCEEEEEecCCcEEEEECC
Q 001178 1021 SQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 1021 g~~l~s~~~dg~i~vwd~~ 1039 (1131)
-.+|+|++.|+.|+|||+.
T Consensus 376 lglLvTsG~~Rvi~iwd~~ 394 (404)
T KOG1409|consen 376 LGLLVTSGTDRVIKIWDVR 394 (404)
T ss_pred ccceeecCCceEEEEEech
Confidence 8999999999999999976
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.36 E-value=1.4e-09 Score=120.75 Aligned_cols=257 Identities=16% Similarity=0.211 Sum_probs=167.5
Q ss_pred CCCeeEEEecCCCCEEEEEeC-----CeEEEEECCCc--e--eEEEEeCCCCCeeEEEEeCCCCcEEEEEe-CCCcEEEE
Q 001178 833 EDVVPCVALSKNDSYVMSAGG-----GKVSLFNMMNF--K--VMTTFMSPPPASTFLAFHPQDNNIIAIGM-EDSTIQIY 902 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~d-----g~i~vwd~~~~--~--~~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~I~iw 902 (1131)
......++++|++++|.+... +.|..|++... + .+.+..........++++| ++++|+++. .+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence 445567899999999998863 57888887753 3 3444443455677899999 777777765 58999999
Q ss_pred Eeec-ceeEEe---ec----------ccccCeeEEEEccCCCEEEEEeC-CCcEEEEEcCCCc--eeeeeeeecCCCCCC
Q 001178 903 NVRV-DEVKTK---LK----------GHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDTWE--KRKSIAIQLPAGKLP 965 (1131)
Q Consensus 903 d~~~-~~~~~~---~~----------~h~~~V~~l~~s~dg~~l~s~~~-Dg~v~lwd~~~~~--~~~~~~~~~~~~~~~ 965 (1131)
++.. +.+... +. .......++.|+|||+++++... ...|.+|+++... ......+..+.+
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G--- 191 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG--- 191 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence 9986 433222 11 12244678999999998887643 3469999998755 222223333333
Q ss_pred CCceEEEEcCCCcEEEEEe--CCeEEEEeCC--Ccc--cceeeecC---CCCCCCeEEEEEccCCCEEEEEe-cCCcEEE
Q 001178 966 VGETRVQFHSDQVRLLVNH--ETQLAIYDGS--KME--CIRQWVPQ---DVLSSPISSAAYSCNSQLIYATF-TDGSIGV 1035 (1131)
Q Consensus 966 ~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~--~~~--~~~~~~~~---~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~v 1035 (1131)
.....++|+|+++++.+.. ++.|.+|++. ++. .+..+... .........|+++|||++|+++. .++.|.+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 6789999999999998864 7889999888 332 22222211 11123688999999999999888 4578999
Q ss_pred EECC--CCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEe-cCCcEEEEecCCCcccccccc
Q 001178 1036 FDAD--SLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGL-TDGSVKVIEPSETERKWGVAV 1104 (1131)
Q Consensus 1036 wd~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~-~Dg~v~iW~~~~~~~~w~~~~ 1104 (1131)
|+++ +|++ ..+.... .....|..+.++|+ +++|+++. .++.|.+|++....+++....
T Consensus 272 f~~d~~~g~l-~~~~~~~---------~~G~~Pr~~~~s~~-g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 272 FDLDPATGTL-TLVQTVP---------TGGKFPRHFAFSPD-GRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEECTTTTTE-EEEEEEE---------ESSSSEEEEEE-TT-SSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEecCCCce-EEEEEEe---------CCCCCccEEEEeCC-CCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 9993 3443 2222111 12244667999994 56666555 677999999987777665543
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2.1e-09 Score=109.65 Aligned_cols=281 Identities=11% Similarity=0.090 Sum_probs=183.4
Q ss_pred CCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeec---ceeeEEeecCCCCCCCCccceeeece
Q 001178 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSN---GVQKLWKWNRTEQNPSGKATAAVAPQ 814 (1131)
Q Consensus 738 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~ 814 (1131)
++.|..|++...... +..+.........+-++++|+++.|.++..+ |.+..|.+
T Consensus 15 s~gI~v~~ld~~~g~-----l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------ 71 (346)
T COG2706 15 SQGIYVFNLDTKTGE-----LSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------ 71 (346)
T ss_pred CCceEEEEEeCcccc-----cchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE------------------
Confidence 467888888742221 1112223366778889999999999988765 55555543
Q ss_pred eecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCC-ceeEEE--EeCCCCC----------eeE
Q 001178 815 HWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMN-FKVMTT--FMSPPPA----------STF 879 (1131)
Q Consensus 815 ~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~-~~~~~~--~~~~~~~----------i~~ 879 (1131)
|..+|++...........+...++++++|++++++. .|.|.++-+.. |.+... +..|.+. +..
T Consensus 72 --D~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 72 --DPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --cCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 444454433222222344458899999999999998 68999999865 433221 2223333 888
Q ss_pred EEEeCCCCcEEEEEeC-CCcEEEEEeecceeEEeec---ccccCeeEEEEccCCCEEEEEeC-CCcEEEEEcCCC--cee
Q 001178 880 LAFHPQDNNIIAIGME-DSTIQIYNVRVDEVKTKLK---GHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDTW--EKR 952 (1131)
Q Consensus 880 l~~s~~~~~~la~g~~-dg~I~iwd~~~~~~~~~~~---~h~~~V~~l~~s~dg~~l~s~~~-Dg~v~lwd~~~~--~~~ 952 (1131)
..|.| ++++|++.+- --.|.+|++..|++...-. .....-..|.|+|++++.....+ +++|.+|..+.. +..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 99999 7877776643 3469999999876533211 22344688999999999777665 899999999884 221
Q ss_pred eeeeeecCC--CCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCc-ccceeeecCCCCCCCeEEEEEccCCCEEEEE
Q 001178 953 KSIAIQLPA--GKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKM-ECIRQWVPQDVLSSPISSAAYSCNSQLIYAT 1027 (1131)
Q Consensus 953 ~~~~~~~~~--~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~-~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~ 1027 (1131)
....+.... -........|..++||++|.++. ...|.+|.+... ..+........+...-..+.|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 111111111 11225778899999999999975 347888887643 2222222222234557899999999999999
Q ss_pred ecC-CcEEEEECC--CCcee
Q 001178 1028 FTD-GSIGVFDAD--SLRLR 1044 (1131)
Q Consensus 1028 ~~d-g~i~vwd~~--~~~~~ 1044 (1131)
.++ ..|.+|..+ +|++.
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 965 568888664 55543
No 251
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.36 E-value=1e-09 Score=115.65 Aligned_cols=369 Identities=12% Similarity=0.129 Sum_probs=221.8
Q ss_pred EEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEE
Q 001178 524 KAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI 603 (1131)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 603 (1131)
.+|...+......+....-++..+++||.|++|++.. ...|.+|....+..+..+. +. .|.-+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~--~~-~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFR--HP-DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeee--cC-CceecccCccccee
Confidence 4455544444444444556789999999999999875 4569999987776555554 22 68889999999999
Q ss_pred EEEEcC---------------CcEEEEEcCCCeEEEEEeccCCCCCcc-eEEEcCCCCEEEEEECCCcEEEEecCCCchh
Q 001178 604 LAAGED---------------NQIKFWDMDNVNMLTSTEAEGGLPSLP-RLRFNKEGNLLVVTTADQGIKILANADGLRA 667 (1131)
Q Consensus 604 ~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~i~-~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1131)
.+-+.. +.+.+||..++..+..+.......... -+.|+-+..++|-. ....+.|+++.....
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~- 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIE- 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccc-
Confidence 986543 359999999999998887654422233 67888888877655 345788998632211
Q ss_pred hhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCcee-----ccccCCCCc
Q 001178 668 LRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRN-----LEDISDKTK 742 (1131)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~d~~v~ 742 (1131)
.. .... ++ ..++.-.++||. + +...++ ..+..+.++
T Consensus 165 ~~-----p~~~------lr-~~gi~dFsisP~--------------------~-------n~~~la~~tPEk~~kpa~~~ 205 (561)
T COG5354 165 EH-----PFKN------LR-PVGILDFSISPE--------------------G-------NHDELAYWTPEKLNKPAMVR 205 (561)
T ss_pred cC-----chhh------cc-ccceeeEEecCC--------------------C-------CCceEEEEccccCCCCcEEE
Confidence 00 0000 00 111222244444 0 000001 223345566
Q ss_pred ceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCc
Q 001178 743 PWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGL 822 (1131)
Q Consensus 743 ~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 822 (1131)
+|.+...........+. ..-..+-|.+.|+++++.....+ +. .........+.+.+.. ++
T Consensus 206 i~sIp~~s~l~tk~lfk--------~~~~qLkW~~~g~~ll~l~~t~~-ks----------nKsyfgesnLyl~~~~-e~ 265 (561)
T COG5354 206 ILSIPKNSVLVTKNLFK--------VSGVQLKWQVLGKYLLVLVMTHT-KS----------NKSYFGESNLYLLRIT-ER 265 (561)
T ss_pred EEEccCCCeeeeeeeEe--------ecccEEEEecCCceEEEEEEEee-ec----------ccceeccceEEEEeec-cc
Confidence 66655322111111111 12245777788887765433211 00 0000000111222222 11
Q ss_pred ccccCCCCCCCCCeeEEEecCCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC---
Q 001178 823 LMTNDVPENAEDVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED--- 896 (1131)
Q Consensus 823 ~~~~~~~~~~~~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d--- 896 (1131)
-+.... ...++|...+|.|+++.+++.+ .-.+.++|+.+. .. +..+...-..+.|+| .++++++++-|
T Consensus 266 ~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp-~~r~il~agF~nl~ 339 (561)
T COG5354 266 SIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSP-HERYILFAGFDNLQ 339 (561)
T ss_pred ccceec--cccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccC-cccEEEEecCCccc
Confidence 111111 3478999999999999888766 577999999876 32 233455667788999 78888776655
Q ss_pred CcEEEEEeecceeE-EeecccccCeeEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeecCCCCCCCCce
Q 001178 897 STIQIYNVRVDEVK-TKLKGHQKHITGLAFSTNLNILVSSGS------DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGET 969 (1131)
Q Consensus 897 g~I~iwd~~~~~~~-~~~~~h~~~V~~l~~s~dg~~l~s~~~------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~ 969 (1131)
|.|.+||....... ..+.+-. .+-+.|+||++++.+... |..++|||+....- ...+
T Consensus 340 gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~--------------fel~ 403 (561)
T COG5354 340 GNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV--------------FELT 403 (561)
T ss_pred cceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchh--------------hhhh
Confidence 68999998765433 3555433 345689999999887643 78899999987331 2456
Q ss_pred EEEEcCCCcEEEEE
Q 001178 970 RVQFHSDQVRLLVN 983 (1131)
Q Consensus 970 ~v~~s~d~~~l~~~ 983 (1131)
.+.|.|.|++..+.
T Consensus 404 ~~~W~p~~~~~tts 417 (561)
T COG5354 404 NITWDPSGQYVTTS 417 (561)
T ss_pred hccccCCcccceee
Confidence 78888888876663
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=7.4e-10 Score=118.37 Aligned_cols=353 Identities=13% Similarity=0.156 Sum_probs=209.8
Q ss_pred eEEEEeCCCCceeE-EecC--CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC
Q 001178 522 KIKAWLYDNVGSRV-DYDA--PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 522 ~i~~wd~~~~~~~~-~~~~--~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
.+.+|......... .+.. ....++..+++++|++++.+. +..+.|++..++..+.+... . .+..+.|+|
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~--~-~~~~L~fSP 83 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL--K-KTYDLLFSP 83 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc--c-eeeeeeecc
Confidence 45666554322222 2222 234578899999999999886 67899999888865444443 2 577899999
Q ss_pred CCCEEEEE-----Ec-----CCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhh
Q 001178 599 TRNRILAA-----GE-----DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRAL 668 (1131)
Q Consensus 599 ~~~~l~~~-----~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~ 668 (1131)
.+.+|.+- .. .-.+.+|++.++.....+...... -.+..|++|..+.+ --..+.+.+|+..+.....
T Consensus 84 ~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~ 160 (566)
T KOG2315|consen 84 KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ 160 (566)
T ss_pred cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc--Ccccccccchhhhh-hhhcceEEEEecCCcccee
Confidence 99888762 12 234779999996665555544332 25788988875443 3345689999986632222
Q ss_pred hhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeec
Q 001178 669 RAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTE 748 (1131)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~ 748 (1131)
..+.. .++....+||. +......+ -..-..+.-..+++|....
T Consensus 161 ~kl~~---------------~~i~~f~lSpg-----------p~~~~vAv-----------yvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 161 HKLSV---------------SGITMLSLSPG-----------PEPPFVAV-----------YVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred eeeec---------------cceeeEEecCC-----------CCCceEEE-----------EccCCCCCCcEEEEecccc
Confidence 21111 11112233332 00000000 0001223335566776652
Q ss_pred cc--CCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCccccc
Q 001178 749 IV--DPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN 826 (1131)
Q Consensus 749 ~~--~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 826 (1131)
.. .....+.+ ....=..+.|++-|..|++.... |++....+.-|. .++.+.+.+ |.-...
T Consensus 204 ~~~~~~~a~ksF-------Fkadkvqm~WN~~gt~LLvLast------dVDktn~SYYGE----q~Lyll~t~-g~s~~V 265 (566)
T KOG2315|consen 204 EGQHQPVANKSF-------FKADKVQMKWNKLGTALLVLAST------DVDKTNASYYGE----QTLYLLATQ-GESVSV 265 (566)
T ss_pred ccccchhhhccc-------cccceeEEEeccCCceEEEEEEE------eecCCCcccccc----ceEEEEEec-CceEEE
Confidence 11 11111111 12223456777777655544321 111111111111 122233333 222222
Q ss_pred CCCCCCCCCeeEEEecCCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC---CcEE
Q 001178 827 DVPENAEDVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED---STIQ 900 (1131)
Q Consensus 827 ~~~~~~~~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d---g~I~ 900 (1131)
.+ ...++|.++.|+++|+-++++. -.++.|||+.. ..+..+ ..++-.++-|+| .|++|+.++-+ |.|.
T Consensus 266 ~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 266 PL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDME 339 (566)
T ss_pred ec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceE
Confidence 23 3588999999999999888776 37899999863 444444 467778999999 78887776654 7899
Q ss_pred EEEeecceeEEeecccccCeeEEEEccCCCEEEEEeC------CCcEEEEEcCC
Q 001178 901 IYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS------DAQLIFWNTDT 948 (1131)
Q Consensus 901 iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~------Dg~v~lwd~~~ 948 (1131)
|||+.+.+++..+..-. -+-..|+|||++++|+.. |..++||++..
T Consensus 340 vwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 99999988888877544 355789999999999875 78899999876
No 253
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.34 E-value=6.9e-09 Score=111.17 Aligned_cols=203 Identities=14% Similarity=0.158 Sum_probs=131.5
Q ss_pred eEEEecCCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec-ceeE--
Q 001178 837 PCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-DEVK-- 910 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~-~~~~-- 910 (1131)
..++++|||+++.+.. +..|.+.|+.+++.+.++....+ ..-...++ ++.+ +-+.||......+.+ ++..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecC-CccE--EEeecCceEEEEecCCCceEEe
Confidence 3578899999988776 57899999999999998876432 22222222 2222 223444444433321 2211
Q ss_pred --EeecccccCee-EEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC------CCCCCCceEEEEcCCCcEE
Q 001178 911 --TKLKGHQKHIT-GLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA------GKLPVGETRVQFHSDQVRL 980 (1131)
Q Consensus 911 --~~~~~h~~~V~-~l~~s~-dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d~~~l 980 (1131)
..+.+-..++. .-.|++ ||+++..... |+|.+-|+...+........... +-.+....-++++++++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 01111001110 014566 7888777666 99999997664433332222211 1122444559999999998
Q ss_pred EEEe-----------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEECCCCceeeEe
Q 001178 981 LVNH-----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCRI 1047 (1131)
Q Consensus 981 ~~~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~~~ 1047 (1131)
.+.. .+.|.++|..+++.+..+... ..+..++|+|||+ +|++.. .++.|.++|..+++.+..+
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG----~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG----HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC----CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 8732 257999999999999988764 5899999999999 888777 5788999999999999887
Q ss_pred c
Q 001178 1048 A 1048 (1131)
Q Consensus 1048 ~ 1048 (1131)
.
T Consensus 339 ~ 339 (352)
T TIGR02658 339 N 339 (352)
T ss_pred c
Confidence 4
No 254
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.33 E-value=9.3e-11 Score=116.97 Aligned_cols=155 Identities=14% Similarity=0.225 Sum_probs=108.1
Q ss_pred eEEEEeCCCCcEEEEEeC----------CCcEEEEEeec-ceeEEeecc-cccCeeEEEEccCCCEEEEE--eCCCcEEE
Q 001178 878 TFLAFHPQDNNIIAIGME----------DSTIQIYNVRV-DEVKTKLKG-HQKHITGLAFSTNLNILVSS--GSDAQLIF 943 (1131)
Q Consensus 878 ~~l~~s~~~~~~la~g~~----------dg~I~iwd~~~-~~~~~~~~~-h~~~V~~l~~s~dg~~l~s~--~~Dg~v~l 943 (1131)
..+.|+| .|..|++-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.+|+. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4567888 5554443322 13455665532 233333432 34679999999999987654 45789999
Q ss_pred EEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe----CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEcc
Q 001178 944 WNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC 1019 (1131)
Q Consensus 944 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~ 1019 (1131)
||++. +.. .... ......+.|+|+|++|++++ .|.+.+||..+.+.+..... ..++.++|||
T Consensus 88 yd~~~-~~i----~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-----~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKG-KKI----FSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-----SDATDVEWSP 153 (194)
T ss_pred EcCcc-cEe----Eeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc-----CcEEEEEEcC
Confidence 99973 221 1111 14567899999999999864 47799999998888877543 3579999999
Q ss_pred CCCEEEEEec------CCcEEEEECCCCceeeEec
Q 001178 1020 NSQLIYATFT------DGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 1020 dg~~l~s~~~------dg~i~vwd~~~~~~~~~~~ 1048 (1131)
||++++++.. |+.++||++. |+++.+..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999999984 7899999985 66665544
No 255
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=1.1e-10 Score=116.35 Aligned_cols=262 Identities=12% Similarity=0.203 Sum_probs=174.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceecc--CCCCCEEEEEEcCCCC-
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK--DSSISVSRVAWSPDGN- 422 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~~~~spdg~- 422 (1131)
..+-|.++.|...|. +||+|..+|.|.++.-..... ..++++... .++......++ .-...|..+.|.+++.
T Consensus 24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~---~ey~~~t~f-qshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK---GEYNFQTEF-QSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred hhcceeeEEeecccc-eEeecCCCCeEEEeecccccc---cceeeeeee-eccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 456899999999998 599999999999997543222 112211000 00000000111 1235789999999765
Q ss_pred -EEEEEeCCCeEEEEEecCCCccc--------------------------------eeee-eecCcCCeeEEEEecCCCc
Q 001178 423 -FIGVAFTKHLIHLYTYQGSNDLC--------------------------------QSLE-IDAHVGGVNDLAFSYPNKQ 468 (1131)
Q Consensus 423 -~las~~~d~~i~vwd~~~~~~~~--------------------------------~~~~-~~~h~~~V~~l~~s~d~~~ 468 (1131)
.+...+.|++|++|.+....... +... -.+|+.-|+++.++.|+.
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56667789999999886432111 0011 246888899999999998
Q ss_pred eEEEEEcCCCcEEEEe--CCCce--eEEecCC-----ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce------
Q 001178 469 LCIVTCGDDKLIRVWD--LSGRK--LFQFEGH-----EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS------ 533 (1131)
Q Consensus 469 ~~l~s~s~d~~i~iwd--~~~~~--~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~------ 533 (1131)
.++|+ +|=.|-+|+ +..+. +..++.+ +.-|++..|+|..- +.++-.+..|+|++.|++....
T Consensus 178 -t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 55555 577899999 44333 2333333 34578888988654 6777788899999999984211
Q ss_pred eEE----------ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC-CCCeeeEEEecccC-----------Cce
Q 001178 534 RVD----------YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE-SEGALKRTYIGFRK-----------KSA 591 (1131)
Q Consensus 534 ~~~----------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~~~~-----------~~v 591 (1131)
... +...-..|..+.|+.+|+++++-. --+|.+||+ ...+++.++..|.. ..|
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 111 111122588999999999999874 468999999 55677777766532 112
Q ss_pred ---EEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 592 ---GVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 592 ---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
.-++|+.++.++++|+..+.+++++...|.
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 237899888999999999999999966543
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=7.6e-10 Score=127.86 Aligned_cols=223 Identities=16% Similarity=0.137 Sum_probs=141.5
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC--c
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--L 479 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~ 479 (1131)
+..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 33566789999999999999887644 369999998876322 3333344667899999995 334555555 5
Q ss_pred EEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEe-cCC--eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEE
Q 001178 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 480 i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 556 (1131)
|++||..+.....+..+........|++ +++.|+..+ .+| .|+++++.+++... +...........|+|||+.+
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 8888955555566666665566667754 556665544 333 57777776655332 22222334467899999999
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC---CcEEEEEcCCCeEEEEEeccCCCC
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED---NQIKFWDMDNVNMLTSTEAEGGLP 633 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 633 (1131)
+.... .++...|.+||+.+++....... . ......|+|+|+.++..+.+ ..|+++++..+ ....+....+
T Consensus 346 ~~~~~-~~~~~~l~~~dl~tg~~~~lt~~--~-~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g-- 418 (430)
T PRK00178 346 VMVHR-QDGNFHVAAQDLQRGSVRILTDT--S-LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQG-- 418 (430)
T ss_pred EEEEc-cCCceEEEEEECCCCCEEEccCC--C-CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCC--
Confidence 88764 22345799999988765332222 1 22245799999988876643 34777777543 3333332222
Q ss_pred CcceEEEcC
Q 001178 634 SLPRLRFNK 642 (1131)
Q Consensus 634 ~i~~v~~sp 642 (1131)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 456667776
No 257
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.8e-09 Score=113.21 Aligned_cols=327 Identities=12% Similarity=0.202 Sum_probs=195.1
Q ss_pred EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE-----------cCCcE
Q 001178 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-----------EDNQI 612 (1131)
Q Consensus 544 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~dg~i 612 (1131)
-+-+.|||-|.||++-. ..-|.+|--.+...++.|. |. .+.-+.|||..++|++-+ +...+
T Consensus 213 etyv~wSP~GTYL~t~H-----k~GI~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFH-----KQGIALWGGESFDRIQRFY--HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred eeeEEecCCceEEEEEe-----ccceeeecCccHHHHHhcc--CC-CceeeecCCccceEEEecCCccccCcccCCCceE
Confidence 46789999999999987 4568999877766666665 22 588899999999999854 23679
Q ss_pred EEEEcCCCeEEEEEeccCCC-CCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCcc
Q 001178 613 KFWDMDNVNMLTSTEAEGGL-PSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSA 691 (1131)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~-~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1131)
.|||+.+|.....+...... ..-.-..||.|++++|.-.. ..|.||+...- ..+...
T Consensus 285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf----~lld~K----------------- 342 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF----MLLDKK----------------- 342 (698)
T ss_pred EEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce----eeeccc-----------------
Confidence 99999999988877653221 12345689999999988776 46778875321 000000
Q ss_pred ceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceE
Q 001178 692 VVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVA 771 (1131)
Q Consensus 692 ~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~ 771 (1131)
.-.-..|.
T Consensus 343 ------------------------------------------------------------------------slki~gIr 350 (698)
T KOG2314|consen 343 ------------------------------------------------------------------------SLKISGIR 350 (698)
T ss_pred ------------------------------------------------------------------------ccCCcccc
Confidence 00223455
Q ss_pred EEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEE
Q 001178 772 RLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA 851 (1131)
Q Consensus 772 ~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 851 (1131)
.+.|+|.+..|+. |. +.+.. ...
T Consensus 351 ~FswsP~~~llAY---------wt----------------------pe~~~---------~pa----------------- 373 (698)
T KOG2314|consen 351 DFSWSPTSNLLAY---------WT----------------------PETNN---------IPA----------------- 373 (698)
T ss_pred CcccCCCcceEEE---------Ec----------------------ccccC---------Ccc-----------------
Confidence 5666666543332 21 11000 011
Q ss_pred eCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEE----------EeCCCcEEEEEeecceeEEeecccccCee
Q 001178 852 GGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAI----------GMEDSTIQIYNVRVDEVKTKLKGHQKHIT 921 (1131)
Q Consensus 852 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~----------g~~dg~I~iwd~~~~~~~~~~~~h~~~V~ 921 (1131)
.+.+..+.+++.+++-..+.-.-..+-|-. +|.+|+. ++.=..+.|+.+.........-.-...|.
T Consensus 374 ---rvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi 449 (698)
T KOG2314|consen 374 ---RVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVI 449 (698)
T ss_pred ---eEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhee
Confidence 122222222222222221111111122222 3333332 22223466666665432222222456799
Q ss_pred EEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE----eCCeEEEEeCC
Q 001178 922 GLAFSTNLNILVSSGS---DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN----HETQLAIYDGS 994 (1131)
Q Consensus 922 ~l~~s~dg~~l~s~~~---Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~----~d~~i~vwd~~ 994 (1131)
..+|-|.|+.+++.+. ..++.+|.+++..... ..+..... .....+.|+|.|++++++ ..|.+..||..
T Consensus 450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~-~lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP-SLVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred eeeeccCCCeEEEEEccccccceeEEEeecCCCch-hhhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 9999999988776554 3578999888522111 11111111 456789999999999874 47889999998
Q ss_pred CcccceeeecCCCCCCCeEEEEEccCCCEEEEEec------CCcEEEEECCC
Q 001178 995 KMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT------DGSIGVFDADS 1040 (1131)
Q Consensus 995 ~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~------dg~i~vwd~~~ 1040 (1131)
...+...-.+. -...+.+.|.|.|+|+++++. |...++|+.+.
T Consensus 526 ~a~~k~~~~~e---h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 526 YADLKDTASPE---HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred hhhhhhccCcc---ccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 54433332222 246788999999999999983 56677777653
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=7.1e-10 Score=110.80 Aligned_cols=359 Identities=15% Similarity=0.222 Sum_probs=212.4
Q ss_pred cCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCc----eeEEecCCc------------cCeEEEeecccCCccEEE
Q 001178 454 VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGR----KLFQFEGHE------------APVYSVCPHQKENIHFIF 515 (1131)
Q Consensus 454 ~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~ 515 (1131)
..-|.++.|..+|. +|++|..+|.|.++. ...+ ....+..|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34589999999999 899999999999998 2222 223333333 357778888888888899
Q ss_pred EEecCCeEEEEeCCCCceeEE-----ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCc
Q 001178 516 STAVDGKIKAWLYDNVGSRVD-----YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS 590 (1131)
Q Consensus 516 s~s~dg~i~~wd~~~~~~~~~-----~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 590 (1131)
..+.|++|++|.+........ .......++++..- +.+.. +-.+ ...+.+.+...|..-
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p------~~~~~----~~~v------ea~prRv~aNaHtyh 166 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLP------VEGRH----DLEV------EASPRRVYANAHTYH 166 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeece------eeccc----ccee------eeeeeeeccccceeE
Confidence 999999999998876544331 01111122222110 00000 0000 122344555445557
Q ss_pred eEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe-EEEE--EeccC---CCCCcceEEEcCC-CCEEEEEECCCcEEEEecCC
Q 001178 591 AGVVQFDTTRNRILAAGEDNQIKFWDMDNVN-MLTS--TEAEG---GLPSLPRLRFNKE-GNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 591 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~--~~~~~---~~~~i~~v~~sp~-~~~l~~~~~dg~i~iw~~~~ 663 (1131)
++++.++.|+..++++ +|=.|.+|++.--. .... ++.+. -..-|++..|+|. -++++..+..|+|++-|+..
T Consensus 167 iNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 167 INSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 8899999999888876 56789999986422 1111 11111 1124788899994 46777888899999999864
Q ss_pred CchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcc
Q 001178 664 GLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKP 743 (1131)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~ 743 (1131)
..-+.. .-++
T Consensus 246 ~aLCd~----------------------------------------------------------------------hsKl 255 (433)
T KOG1354|consen 246 SALCDA----------------------------------------------------------------------HSKL 255 (433)
T ss_pred hhhhcc----------------------------------------------------------------------hhhh
Confidence 310000 0000
Q ss_pred eeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcc
Q 001178 744 WELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLL 823 (1131)
Q Consensus 744 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 823 (1131)
+.... . |...
T Consensus 256 fEepe-------------------d--------p~~r------------------------------------------- 265 (433)
T KOG1354|consen 256 FEEPE-------------------D--------PSSR------------------------------------------- 265 (433)
T ss_pred hcccc-------------------C--------Ccch-------------------------------------------
Confidence 00000 0 0000
Q ss_pred cccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEC-CCceeEEEEeCCCC------------C---eeEEEEeCCCC
Q 001178 824 MTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNM-MNFKVMTTFMSPPP------------A---STFLAFHPQDN 887 (1131)
Q Consensus 824 ~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~-~~~~~~~~~~~~~~------------~---i~~l~~s~~~~ 887 (1131)
.+..+-...|..+.|+++|+|+++-+--+|++||+ -..+.+.++..|.. . -..++|+- ++
T Consensus 266 ---sffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~ 341 (433)
T KOG1354|consen 266 ---SFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-ND 341 (433)
T ss_pred ---hhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-Cc
Confidence 00012345677889999999999888789999998 34556666654421 1 23568888 78
Q ss_pred cEEEEEeCCCcEEEEEeecceeE-EeecccccC--eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCC
Q 001178 888 NIIAIGMEDSTIQIYNVRVDEVK-TKLKGHQKH--ITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKL 964 (1131)
Q Consensus 888 ~~la~g~~dg~I~iwd~~~~~~~-~~~~~h~~~--V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~ 964 (1131)
.++++|+....+++|+...|... .++...... ...+ ..-+.+.+++......+|-- ....
T Consensus 342 ~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd--------------~ldf 404 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVD--------------ALDF 404 (433)
T ss_pred ceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCccccccccc--------------hhhh
Confidence 89999999999999997766432 222222211 1111 01123444444433222210 0011
Q ss_pred CCCceEEEEcCCCcEEEEEeCCeEEEEe
Q 001178 965 PVGETRVQFHSDQVRLLVNHETQLAIYD 992 (1131)
Q Consensus 965 ~~~v~~v~~s~d~~~l~~~~d~~i~vwd 992 (1131)
...+...+|+|....+|++..+.++||.
T Consensus 405 ~kkilh~aWhp~en~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 405 RKKILHTAWHPKENSIAVAATNNLYIFQ 432 (433)
T ss_pred hhHHHhhccCCccceeeeeecCceEEec
Confidence 1345667999999999998888888764
No 259
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=7.5e-10 Score=126.92 Aligned_cols=223 Identities=15% Similarity=0.112 Sum_probs=140.2
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCc--
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL-- 479 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~-- 479 (1131)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++.. . +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~---lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-K---VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-E---ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 33556788999999999999887543 26888999887632 1 2222333457899999995 3445566665
Q ss_pred EEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEe-cCC--eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEE
Q 001178 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 480 i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 556 (1131)
|++||..+..+..+..+.......+|++ |++.|+..+ .++ .|.++|+++++... +...........|+|||+++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEE
Confidence 7777855555666666666666777765 556665544 344 45556766554332 22233334457899999999
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEc-CC--cEEEEEcCCCeEEEEEeccCCCC
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGE-DN--QIKFWDMDNVNMLTSTEAEGGLP 633 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 633 (1131)
+..+.. .+...|.++|+.+++....... . ......|+|+|+.|+..+. ++ .+++++.. +.....+.....
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~lt~~-~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g-- 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQVLTST-R--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQG-- 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEEccCC-C--CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCC--
Confidence 887642 2345788889888765432221 1 1223479999998877554 33 37777864 555555543322
Q ss_pred CcceEEEcC
Q 001178 634 SLPRLRFNK 642 (1131)
Q Consensus 634 ~i~~v~~sp 642 (1131)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 466777876
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=7.1e-10 Score=125.94 Aligned_cols=227 Identities=11% Similarity=0.015 Sum_probs=141.2
Q ss_pred CCCcEEEEEEecCCCc--EEEEEcCCC--eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 346 QGSSVVSMDFHPFHHT--LLVVGCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~--llasg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
....+.+-+|||||+. ++++...+| .|.+.++.+|+... +....+.....+|||||
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPRK 242 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCCC
Confidence 4556677899999976 333554443 58888888876543 22233445568999999
Q ss_pred CEEEEEeC-----CCeEEEEEecCCCccceeeeee-cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--C--CCceeE
Q 001178 422 NFIGVAFT-----KHLIHLYTYQGSNDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--L--SGRKLF 491 (1131)
Q Consensus 422 ~~las~~~-----d~~i~vwd~~~~~~~~~~~~~~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~--~~~~~~ 491 (1131)
+.||..+. +..+.+|++.++..-.. ..+. ++.+.....+|+|||+. ++++...++...||. . .+....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~-~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKP-RRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcc-eEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECcccccceE
Confidence 99987653 22345577765321111 1222 23344567899999995 233444566555664 3 234455
Q ss_pred EecCCccCeEEEeecccCCccEEEEEecC---CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCce
Q 001178 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 568 (1131)
.+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++..... .....+....|+|||+.|+..+. ..+...
T Consensus 321 ~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~-~~g~~~ 396 (428)
T PRK01029 321 LLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAG-NSNESE 396 (428)
T ss_pred EeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEEC-CCCCce
Confidence 5555555666777754 56777765443 46899999877654433 22345678899999999887653 234678
Q ss_pred EEEEeCCCCeeeEEEecccCCceEEEEEeCCC
Q 001178 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTR 600 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 600 (1131)
|+++|+.+++....... .+.+...+|+|..
T Consensus 397 L~~vdl~~g~~~~Lt~~--~g~~~~p~Ws~~~ 426 (428)
T PRK01029 397 LYLISLITKKTRKIVIG--SGEKRFPSWGAFP 426 (428)
T ss_pred EEEEECCCCCEEEeecC--CCcccCceecCCC
Confidence 99999988776554432 2245567777643
No 261
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.28 E-value=3.9e-10 Score=112.56 Aligned_cols=163 Identities=20% Similarity=0.375 Sum_probs=115.6
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001178 413 SRVAWSPDGNFIGVAFT----------KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1131)
Q Consensus 413 ~~~~~spdg~~las~~~----------d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 482 (1131)
..+.|+|+|++|+.-.. -+...+|.++..........+. ..++|.+++|+|+|+.+.++.|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 35889999998776433 1346666664433222222222 345799999999999655566667889999
Q ss_pred EeCCCceeEEecCCccCeEEEeecccCCccEEEEEec---CCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEE
Q 001178 483 WDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV---DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 483 wd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
||.+++.+..+. ...+..+.|+| +|+++++++. .|.|.+||.++.+.+..... ..++.+.|+|||++++++
T Consensus 88 yd~~~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 88 YDVKGKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATA 161 (194)
T ss_pred EcCcccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEE
Confidence 998788888774 46778899865 5688888864 46799999997666655443 347899999999999998
Q ss_pred eec--CCCCceEEEEeCCCCeeeEEE
Q 001178 560 GTS--KEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 560 ~~~--~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
... ...+..++||+.. |+.+...
T Consensus 162 ~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EeccceeccccEEEEEec-CeEeEec
Confidence 753 2346788999975 6655443
No 262
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.28 E-value=7.6e-10 Score=128.00 Aligned_cols=209 Identities=17% Similarity=0.121 Sum_probs=137.9
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC--c
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--L 479 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~ 479 (1131)
+..+...+.+.+|||||++||.+..+ ..|.+||+.+++.. .+..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 34566678999999999999987654 47999999887532 23445566778999999985 344555444 5
Q ss_pred EEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEec-CC--eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEE
Q 001178 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 480 i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 556 (1131)
|++||..+.....+..+........|++ +++.|+..+. ++ .|.++++.++.. ..+......+....|+|+|+++
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEE
Confidence 8888855555566665655555666754 6677765544 33 577778776543 3334445567788999999999
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCC---cEEEEEcCCCeEEEEE
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN---QIKFWDMDNVNMLTST 626 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~ 626 (1131)
+.+.... +...|.+||+.++.... +... . ......|+|++++|+..+.++ .+++.+.. +.....+
T Consensus 337 ~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~-~-~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~ 404 (417)
T TIGR02800 337 AFVHREG-GGFNIAVMDLDGGGERV-LTDT-G-LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARL 404 (417)
T ss_pred EEEEccC-CceEEEEEeCCCCCeEE-ccCC-C-CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeEC
Confidence 9887521 24589999998765432 2221 1 234467999999888876654 35555543 3333433
No 263
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.26 E-value=5.8e-10 Score=128.99 Aligned_cols=213 Identities=17% Similarity=0.131 Sum_probs=137.3
Q ss_pred eeeeccCCCcEEEEEEecCCCcEEEEEcCC--CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGD--GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 340 ~~~~~~h~~~V~~~~fspdg~~llasg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
......+...+.+.+|||||++++.+...+ ..|++||+.+++... +..+.+.+.+++|
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~~~ 241 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAPAF 241 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEE
Confidence 333445777899999999999754443322 479999998875432 2234456778999
Q ss_pred cCCCCEEEEE-eCCC--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEE-EcCCC--cEEEEeCCCceeE
Q 001178 418 SPDGNFIGVA-FTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVT-CGDDK--LIRVWDLSGRKLF 491 (1131)
Q Consensus 418 spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s-~s~d~--~i~iwd~~~~~~~ 491 (1131)
+|||+.|+.. +.++ .|.+||+.++... .+..+.......+|+|||+. |+. ...++ .|.++|..+....
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~~~ 315 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGEVR 315 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCCEE
Confidence 9999987754 4343 5888898876532 24445555667899999994 443 33333 5777785554455
Q ss_pred EecCCccCeEEEeecccCCccEEEEEecCC---eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCce
Q 001178 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 568 (1131)
.+..+...+....|+ +++++++.++.++ .|.+||+.++.... +.. ........|+|||++|+..... ++...
T Consensus 316 ~l~~~~~~~~~~~~s--pdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~l~~~~~~-~~~~~ 390 (417)
T TIGR02800 316 RLTFRGGYNASPSWS--PDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRMILYATTR-GGRGV 390 (417)
T ss_pred EeecCCCCccCeEEC--CCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCEEEEEEeC-CCcEE
Confidence 555555566677775 4567888777765 78888987754332 222 2224556899999999888752 23445
Q ss_pred EEEEeCCCCeeeEEEe
Q 001178 569 LVEWNESEGALKRTYI 584 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~ 584 (1131)
+++.+.. +.....+.
T Consensus 391 l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 391 LGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEECC-CceeeECC
Confidence 6666643 44444443
No 264
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.26 E-value=4.7e-09 Score=110.80 Aligned_cols=233 Identities=13% Similarity=0.139 Sum_probs=152.6
Q ss_pred EEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeC-CCCCeeEEEEeCC-CCcEEEE-----EeCCCcEEEEEeecceeE
Q 001178 838 CVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMS-PPPASTFLAFHPQ-DNNIIAI-----GMEDSTIQIYNVRVDEVK 910 (1131)
Q Consensus 838 ~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~-~~~~la~-----g~~dg~I~iwd~~~~~~~ 910 (1131)
-+.|+-|.+++|-.....+.|+++...-....+.. ....|+...|+|. ++..||. +..++++++|.+..++.+
T Consensus 136 ~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l 215 (561)
T COG5354 136 VLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL 215 (561)
T ss_pred eeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee
Confidence 57888899888877778899999732222212221 1356888899993 3344553 456788999999876655
Q ss_pred EeecccccCeeEEEEccCCCEEEEEe-----------CCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcE
Q 001178 911 TKLKGHQKHITGLAFSTNLNILVSSG-----------SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 911 ~~~~~h~~~V~~l~~s~dg~~l~s~~-----------~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 979 (1131)
.+-.-..-.=..+.|.+.|++|+.-- ....++++++...... ... ...++|...+|.|.+..
T Consensus 216 ~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~----V~~---~~~~pVhdf~W~p~S~~ 288 (561)
T COG5354 216 VTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP----VEK---DLKDPVHDFTWEPLSSR 288 (561)
T ss_pred eeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc----eec---cccccceeeeecccCCc
Confidence 44322223335688888888766421 1346788887742211 111 22378999999999998
Q ss_pred EEEEe---CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECCCCceee-EecCCcc
Q 001178 980 LLVNH---ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD---GSIGVFDADSLRLRC-RIAPSAY 1052 (1131)
Q Consensus 980 l~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d---g~i~vwd~~~~~~~~-~~~~~~~ 1052 (1131)
+++.+ +-.+.++|++.. ... ..+ ...-..+.|||.+++++.++-| |.|-+||........ ++.+..
T Consensus 289 F~vi~g~~pa~~s~~~lr~N-l~~-~~P----e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n- 361 (561)
T COG5354 289 FAVISGYMPASVSVFDLRGN-LRF-YFP----EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN- 361 (561)
T ss_pred eeEEecccccceeecccccc-eEE-ecC----CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC-
Confidence 88743 677889999866 222 222 3455677899999999998844 789999987655444 554322
Q ss_pred ccCCCCCCCCccccEEEEEcCCCCCeEEEEec------CCcEEEEecCCCcc
Q 001178 1053 MSQASPNSSQTVFPLVVTSHPQEPNQLAVGLT------DGSVKVIEPSETER 1098 (1131)
Q Consensus 1053 ~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~------Dg~v~iW~~~~~~~ 1098 (1131)
...+.|+| |+.++.+... |..+.||++...+.
T Consensus 362 -------------~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 362 -------------TSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred -------------ceEeeccC-CceEEEecCCCcccccCcceEEEEecCchh
Confidence 22377999 5555555543 78899999976543
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=8.2e-10 Score=127.59 Aligned_cols=228 Identities=11% Similarity=0.072 Sum_probs=139.9
Q ss_pred ceeeeccCCCcEEEEEEecCCCcEEEEEcCC--CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGD--GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 339 ~~~~~~~h~~~V~~~~fspdg~~llasg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
.......+...+...+|||||++++++...+ ..|.+||+.+++... +....+.+...+
T Consensus 190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~ 249 (430)
T PRK00178 190 RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPA 249 (430)
T ss_pred CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeE
Confidence 3344456778899999999999755555333 369999998876532 112233455789
Q ss_pred EcCCCCEEEEE-eCCC--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC--cEEEEeCCCceeE
Q 001178 417 WSPDGNFIGVA-FTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLF 491 (1131)
Q Consensus 417 ~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~ 491 (1131)
|||||+.|+.. +.++ .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|+++|..+....
T Consensus 250 ~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 250 WSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCEE
Confidence 99999988754 4444 6888899887532 24455666778899999995 333443443 5777774333333
Q ss_pred EecCCccCeEEEeecccCCccEEEEEec-CC--eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCce
Q 001178 492 QFEGHEAPVYSVCPHQKENIHFIFSTAV-DG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 568 (1131)
.+...........|+ ++++.|+..+. ++ .|.+||+.++....... ........|+|||+.++..+. ..+...
T Consensus 325 ~lt~~~~~~~~~~~S--pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~-~~g~~~ 399 (430)
T PRK00178 325 RVTFVGNYNARPRLS--ADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATR-QQGRGV 399 (430)
T ss_pred EeecCCCCccceEEC--CCCCEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEe-cCCceE
Confidence 333222223344564 45567766654 33 57888988765433222 122235689999999988764 233567
Q ss_pred EEEEeCCCCeeeEEEecccCCceEEEEEeC
Q 001178 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
|++++.. +...+.+.. ..+.+...+|+|
T Consensus 400 l~~~~~~-g~~~~~l~~-~~g~~~~p~ws~ 427 (430)
T PRK00178 400 LMLVSIN-GRVRLPLPT-AQGEVREPSWSP 427 (430)
T ss_pred EEEEECC-CCceEECcC-CCCCcCCCccCC
Confidence 8888875 433334433 222455566665
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=2.6e-08 Score=101.84 Aligned_cols=257 Identities=12% Similarity=0.207 Sum_probs=175.1
Q ss_pred CCCCeeEEEecCCCCEEEEEe----CCeEEEEECCC--ceeE--EEEeCCCCCeeEEEEeCCCCcEEEEEeC-CCcEEEE
Q 001178 832 AEDVVPCVALSKNDSYVMSAG----GGKVSLFNMMN--FKVM--TTFMSPPPASTFLAFHPQDNNIIAIGME-DSTIQIY 902 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~----dg~i~vwd~~~--~~~~--~~~~~~~~~i~~l~~s~~~~~~la~g~~-dg~I~iw 902 (1131)
....++-|+|+|+++.|.++. .|.|.-|.++. |++. ........+...+++++ ++++++++.. .|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 566778899999999998875 36688877764 4432 22333344558899999 8888887764 4789999
Q ss_pred Eeec-ceeE--EeecccccC----------eeEEEEccCCCEEEEEe--CCCcEEEEEcCCCceeeeeeeecCCCCCCCC
Q 001178 903 NVRV-DEVK--TKLKGHQKH----------ITGLAFSTNLNILVSSG--SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVG 967 (1131)
Q Consensus 903 d~~~-~~~~--~~~~~h~~~----------V~~l~~s~dg~~l~s~~--~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 967 (1131)
-+.. |.+. .....|.+. +-...|.|++++|++.+ .| .|.+|+++.+............+ ..
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G---~G 192 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPG---AG 192 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCC---CC
Confidence 8865 4322 123345555 88899999999999875 45 59999999776555444444333 67
Q ss_pred ceEEEEcCCCcEEEEEe--CCeEEEEeCCCc-ccceeeecC------CCCCCCeEEEEEccCCCEEEEEec-CCcEEEEE
Q 001178 968 ETRVQFHSDQVRLLVNH--ETQLAIYDGSKM-ECIRQWVPQ------DVLSSPISSAAYSCNSQLIYATFT-DGSIGVFD 1037 (1131)
Q Consensus 968 v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~-~~~~~~~~~------~~~~~~v~~i~~s~dg~~l~s~~~-dg~i~vwd 1037 (1131)
.+.|+|+|++++..+.. +++|.+|..... ..+..+... ........+|.+++||++|.++.. ...|.+|.
T Consensus 193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 89999999999988754 899999998863 222222221 112556788999999999999873 35788887
Q ss_pred CCCC-ceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecC-CcEEEEecCCCccccccc
Q 001178 1038 ADSL-RLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTD-GSVKVIEPSETERKWGVA 1103 (1131)
Q Consensus 1038 ~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~D-g~v~iW~~~~~~~~w~~~ 1103 (1131)
+... ..+..+... ......|-...+.| ++++|++++.| .+|.+|.+....|+....
T Consensus 273 V~~~~g~L~~~~~~---------~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 273 VDPDGGKLELVGIT---------PTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred EcCCCCEEEEEEEe---------ccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 7532 222222211 12234455678888 55677777764 479999999888765444
No 267
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=3.4e-09 Score=112.61 Aligned_cols=237 Identities=12% Similarity=0.157 Sum_probs=154.9
Q ss_pred EEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC-----CcEEEEEeecceeEEe
Q 001178 838 CVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED-----STIQIYNVRVDEVKTK 912 (1131)
Q Consensus 838 ~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-----g~I~iwd~~~~~~~~~ 912 (1131)
-..||.|++++|.-..++|.||+..+..++..-......|....|+| .+.+||.-+.. ..+.+..+.+++.+.+
T Consensus 310 ~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred eEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeee
Confidence 36799999999998889999999988665544333456799999999 88888865533 3577777787777766
Q ss_pred ecccccCeeEEEEccCCCEEEEEeC-------C---CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGS-------D---AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~-------D---g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
-.-|.-.=..|-|-.+|.+|+.--. - ..+.|+.+..... ....+ .....+...+|-|.|..+++
T Consensus 389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~v-----elke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVV-----ELKESVIAFAWEPHGDKFAV 462 (698)
T ss_pred ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceee-----ecchheeeeeeccCCCeEEE
Confidence 6555544455777788888875321 1 1244444443221 11111 11257888899999998887
Q ss_pred Ee----CCeEEEEeCCC-cccceeeecCCCCCCCeEEEEEccCCCEEEEEe---cCCcEEEEECCCCceeeEecCCcccc
Q 001178 983 NH----ETQLAIYDGSK-MECIRQWVPQDVLSSPISSAAYSCNSQLIYATF---TDGSIGVFDADSLRLRCRIAPSAYMS 1054 (1131)
Q Consensus 983 ~~----d~~i~vwd~~~-~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~ 1054 (1131)
-+ ...+.+|.+.+ ........... ....+.+.|||.|++++++. ..|.+..+|..-...... .
T Consensus 463 i~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~-~------ 533 (698)
T KOG2314|consen 463 ISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDT-A------ 533 (698)
T ss_pred EEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhc-c------
Confidence 32 45688998873 32222222211 34678899999999998877 468899999874221111 1
Q ss_pred CCCCCCCCccccEEEEEcCCCCCeEEEEec------CCcEEEEecCCC
Q 001178 1055 QASPNSSQTVFPLVVTSHPQEPNQLAVGLT------DGSVKVIEPSET 1096 (1131)
Q Consensus 1055 ~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~------Dg~v~iW~~~~~ 1096 (1131)
++.|.. ...+.|.| .|.|+++++. |.-.++|++...
T Consensus 534 --~~eh~~---at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 534 --SPEHFA---ATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred --Cccccc---cccceECC-CCCEEEEeeehhhhccccceEEEEeecH
Confidence 111111 12488999 5789998886 556788887644
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=5.8e-10 Score=127.83 Aligned_cols=224 Identities=14% Similarity=0.081 Sum_probs=135.5
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCC--eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
...+...+.+..|||||++++.+...++ .|.+||+.+++... +....+.....+||||
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFSPD 272 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeECCC
Confidence 3456778899999999997555544333 58899998876432 1111223346899999
Q ss_pred CCEEEEE-eCCCe--EEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC--cEEEEeCCCceeEEecC
Q 001178 421 GNFIGVA-FTKHL--IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEG 495 (1131)
Q Consensus 421 g~~las~-~~d~~--i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~ 495 (1131)
|+.|+.. +.++. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|..+.....+..
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~ 347 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSRLTF 347 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEEEec
Confidence 9988754 55564 777788776532 34455556788999999995 334444444 45666744333444432
Q ss_pred CccCeEEEeecccCCccEEEEEec-CC--eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEE
Q 001178 496 HEAPVYSVCPHQKENIHFIFSTAV-DG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 572 (1131)
........+|+ ++|+.|+..+. ++ .|.++|++++.... +... .......|+|||+.|+.... .++...++++
T Consensus 348 ~g~~~~~~~~S--pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~-~~g~~~l~~~ 422 (448)
T PRK04792 348 EGEQNLGGSIT--PDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTT-YQGKQVLAAV 422 (448)
T ss_pred CCCCCcCeeEC--CCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEe-cCCceEEEEE
Confidence 22223345664 45566665544 44 45556776655432 2211 12234579999999988764 3345568888
Q ss_pred eCCCCeeeEEEecccCCceEEEEEeC
Q 001178 573 NESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
+. +|...+.+.... +.+...+|+|
T Consensus 423 ~~-~G~~~~~l~~~~-g~~~~p~Wsp 446 (448)
T PRK04792 423 SI-DGRFKARLPAGQ-GEVKSPAWSP 446 (448)
T ss_pred EC-CCCceEECcCCC-CCcCCCccCC
Confidence 86 466655555432 2456667776
No 269
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=3.7e-09 Score=120.12 Aligned_cols=241 Identities=12% Similarity=0.062 Sum_probs=146.6
Q ss_pred CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE---EEeCC--CeEEEEEecCCCcc
Q 001178 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG---VAFTK--HLIHLYTYQGSNDL 444 (1131)
Q Consensus 370 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la---s~~~d--~~i~vwd~~~~~~~ 444 (1131)
..|.+.|.+.+.... +......+.+-+|||||+.++ +...+ ..|.+.++.+++..
T Consensus 165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK 224 (428)
T ss_pred ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence 367777776654432 233445567789999998533 33333 35888888887643
Q ss_pred ceeeeeecCcCCeeEEEEecCCCceEEEEEcC----CCcEEEEe-CCC--ceeEEec-CCccCeEEEeecccCCccEEEE
Q 001178 445 CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD----DKLIRVWD-LSG--RKLFQFE-GHEAPVYSVCPHQKENIHFIFS 516 (1131)
Q Consensus 445 ~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~----d~~i~iwd-~~~--~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s 516 (1131)
+ +....+.....+|||||+. ++++... |..+.+|+ ..+ .....+. ++.......+|+ +||+.|+.
T Consensus 225 ~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS--PDG~~Laf 297 (428)
T PRK01029 225 K----ILALQGNQLMPTFSPRKKL-LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS--PDGTRLVF 297 (428)
T ss_pred E----eecCCCCccceEECCCCCE-EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC--CCCCEEEE
Confidence 2 3334445567899999995 3333322 33445577 332 2223333 222334556774 56676665
Q ss_pred Ee-cCCeEEEEe--CCC-CceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceE
Q 001178 517 TA-VDGKIKAWL--YDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAG 592 (1131)
Q Consensus 517 ~s-~dg~i~~wd--~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~ 592 (1131)
.+ .+|...+|. ++. +.....+......+....|+|||+.|+..+. .++...|++||+.+++....... ...+.
T Consensus 298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~-~~g~~~I~v~dl~~g~~~~Lt~~--~~~~~ 374 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV-IKGVRQICVYDLATGRDYQLTTS--PENKE 374 (428)
T ss_pred EECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEc-CCCCcEEEEEECCCCCeEEccCC--CCCcc
Confidence 54 567555554 432 2223334444456678899999999998764 23456899999998876544332 22456
Q ss_pred EEEEeCCCCEEEEEEc---CCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 593 VVQFDTTRNRILAAGE---DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 593 ~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
...|+|||+.|+.... ...|+++|+.+++........+ .+...+|+|-
T Consensus 375 ~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~~~~p~Ws~~ 425 (428)
T PRK01029 375 SPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSG---EKRFPSWGAF 425 (428)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC---cccCceecCC
Confidence 7889999998876443 3568899998877654443222 4567788774
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.22 E-value=1.7e-08 Score=108.12 Aligned_cols=258 Identities=15% Similarity=0.139 Sum_probs=161.6
Q ss_pred CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEEec
Q 001178 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT----------KHLIHLYTYQ 439 (1131)
Q Consensus 370 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~----------d~~i~vwd~~ 439 (1131)
++|.+.|..+++.+... -.|.... .+ +||||+.|.++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i------------------~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMT------------------DGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEE------------------EccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 89999999998876521 1122111 24 9999998877755 6899999999
Q ss_pred CCCccceeeeeec--C---cCCeeEEEEecCCCceEEEEE--cCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCc
Q 001178 440 GSNDLCQSLEIDA--H---VGGVNDLAFSYPNKQLCIVTC--GDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENI 511 (1131)
Q Consensus 440 ~~~~~~~~~~~~~--h---~~~V~~l~~s~d~~~~~l~s~--s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~ 511 (1131)
+.+.+..+. +.. + ...-..++++|||+. ++.. +.+..|-+.| .+++.+.++.--. ...-+. ..+.
T Consensus 86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~--l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~---t~e~ 158 (352)
T TIGR02658 86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKT--LLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP---TAND 158 (352)
T ss_pred cCcEEeEEc-cCCCchhhccCccceEEECCCCCE--EEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE---ecCC
Confidence 987654321 111 1 223457899999995 4443 4489999999 7888877776322 111111 1111
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEE-----ecCCCceE-EEEEEcc-CCCEEEEEeecCCCCceEEEEeCCCC-----ee
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVD-----YDAPGLWC-TTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESEG-----AL 579 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~-----~~~~~~~v-~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~-----~~ 579 (1131)
. ..+-+.||......++....... +.....++ ..-.|.+ +|+++.... .|.|++.|+... +.
T Consensus 159 ~-~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~ 232 (352)
T TIGR02658 159 T-FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPA 232 (352)
T ss_pred c-cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecce
Confidence 1 22334566655544443332211 11100000 0013455 787776664 589999995432 22
Q ss_pred eEEEe------cccCCceEEEEEeCCCCEEEEEE----------cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 580 KRTYI------GFRKKSAGVVQFDTTRNRILAAG----------EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 580 ~~~~~------~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
...+. +-....+..+++++++++++++. ..+.|.++|..+++.+..+.... .+..++++||
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~D 309 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQD 309 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCC
Confidence 22221 11122344599999999888843 22579999999999999887643 5789999999
Q ss_pred CC-EEEEEE-CCCcEEEEecCCC
Q 001178 644 GN-LLVVTT-ADQGIKILANADG 664 (1131)
Q Consensus 644 ~~-~l~~~~-~dg~i~iw~~~~~ 664 (1131)
++ +|++.. .++.|.++|..++
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcCC
Confidence 99 887766 5788999999887
No 271
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.16 E-value=3.2e-10 Score=109.26 Aligned_cols=170 Identities=19% Similarity=0.233 Sum_probs=122.9
Q ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc---------HHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhH
Q 001178 3 SLSRELVFLILQFLDEEKFKESVHRLEQESGFFFN---------MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIF 73 (1131)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~ 73 (1131)
...+|+.|||+.||-..||.++|..+.+|+|+... -...|.+|..|+-++|+..++++..---+. ...+.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~-n~~l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT-NRELF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc-chhHH
Confidence 45789999999999999999999999999999761 567899999999999999999983221112 22389
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccccccccccCCC--ChhHHHHHHHHHHhhc
Q 001178 74 FEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD--TRSARTIMLVELKKLI 151 (1131)
Q Consensus 74 ~~i~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~~~~R~~l~~~l~~~~ 151 (1131)
|.+.+|+++||+..+...+|+.|+|.+|.|+...+++.++.|...|..--++. ........ ....|.++...+...|
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~-~~~sp~~~l~~~s~R~kvA~~vN~ai 181 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFEL-SQESPSAELLSQSLRQKVASEVNSAI 181 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCC-cccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877777777777665432221 01000000 2355777777777655
Q ss_pred ccCcCccccccCCCCChHHHHHHHHHHHHHH
Q 001178 152 EANPLFRDKLVFPSLKTSRLRTLINQSLNWQ 182 (1131)
Q Consensus 152 ~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q 182 (1131)
-...- . -...+|..|+..-...|
T Consensus 182 L~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 182 LASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHhc---c-----cccchHHHHHHHHHHHH
Confidence 43211 0 12457777774444444
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.16 E-value=2.3e-09 Score=115.75 Aligned_cols=192 Identities=12% Similarity=0.167 Sum_probs=150.1
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEe------c------------CCCceEEEEEcCCCcE
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS------Y------------PNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s------~------------d~~~~~l~s~s~d~~i 480 (1131)
|-+.++|....||.+++||...++....+.....-.+..++..|. | .+...+++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456799999999999999999876433222222233445555552 1 1222378888899999
Q ss_pred EEEe-CCCceeEEec--CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEE
Q 001178 481 RVWD-LSGRKLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLF 557 (1131)
Q Consensus 481 ~iwd-~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 557 (1131)
.+++ ..|+.-.++. .|.++|.++.++ .+-..|++++.|+.+..|+.........+......+.+++++|||..++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDA--QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecc--cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999 7777777776 699999999874 4447899999999999999999888888888888899999999999999
Q ss_pred EEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCC-----CCEEEEE-EcCCcEEEEEcCC
Q 001178 558 SCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT-----RNRILAA-GEDNQIKFWDMDN 619 (1131)
Q Consensus 558 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~-~~dg~i~iwd~~~ 619 (1131)
+++ ++|.+||+++++.+..|.+|.. +|+++.|..+ |.+++++ ..+..+.+|-...
T Consensus 161 ~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 984 5899999999999999999766 9999999877 6666663 4456677776544
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.14 E-value=7.1e-09 Score=112.05 Aligned_cols=189 Identities=14% Similarity=0.274 Sum_probs=149.0
Q ss_pred cCCCCEEEEEe-CCeEEEEECCCceeEEEEeCC---CCCeeEEEE------eC-------------CCCcEEEEEeCCCc
Q 001178 842 SKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSP---PPASTFLAF------HP-------------QDNNIIAIGMEDST 898 (1131)
Q Consensus 842 s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~------s~-------------~~~~~la~g~~dg~ 898 (1131)
.|.+.++|... ||.+++|+..+++....+... .+..++..| +| .|...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567788877 899999999999888877532 233344433 22 14567888999999
Q ss_pred EEEEEeecceeEEeec--ccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCC
Q 001178 899 IQIYNVRVDEVKTKLK--GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD 976 (1131)
Q Consensus 899 I~iwd~~~~~~~~~~~--~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 976 (1131)
|.+|+...++....+. .|.+.|+++.++.+-.+|.|++.|+.+..|+.......... .. ....+.+++.+||
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~-----~~-~~~~~~sl~is~D 155 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW-----KE-QKPLVSSLCISPD 155 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee-----cc-CCCccceEEEcCC
Confidence 9999999999887775 69999999999999999999999999999999885432221 11 1257889999999
Q ss_pred CcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccC-----CCEEEEEe-cCCcEEEEECCC
Q 001178 977 QVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN-----SQLIYATF-TDGSIGVFDADS 1040 (1131)
Q Consensus 977 ~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~d-----g~~l~s~~-~dg~i~vwd~~~ 1040 (1131)
|..|+++ .+.|.+||+.+++.+..|.+| .++|.+++|..+ |.+++++. .+..+.+|-++.
T Consensus 156 ~~~l~~a-s~~ik~~~~~~kevv~~ftgh---~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 156 GKILLTA-SRQIKVLDIETKEVVITFTGH---GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCEEEec-cceEEEEEccCceEEEEecCC---CcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9888765 468999999999999999888 899999999887 67666554 567788887764
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.14 E-value=1.7e-09 Score=108.33 Aligned_cols=201 Identities=16% Similarity=0.253 Sum_probs=132.7
Q ss_pred eeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCc--cCeEEEeecccCCccEEEEEecCCeEE
Q 001178 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHE--APVYSVCPHQKENIHFIFSTAVDGKIK 524 (1131)
Q Consensus 449 ~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~s~dg~i~ 524 (1131)
.+.||...|++...-|... -+++.+.|.++|||- ..++.-..+. |. .+++++.+ ..+...|+.|-..|++.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y--~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEY--VSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhh-hhCCCCceEeee--eccceEEEEEEecceEE
Confidence 4789999999988888777 589999999999998 3343333322 33 45666665 44557899999999998
Q ss_pred EEeCCC----CceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCC
Q 001178 525 AWLYDN----VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR 600 (1131)
Q Consensus 525 ~wd~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 600 (1131)
-+.+.. .........|...+..+.|+-...++++++. |..+.---.+.+..+..+.-.. ...+..+.-
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~-- 165 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQFAWHCTESGNRLGGYNFET--PASALQFDA-- 165 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccceEEEeeccCCcccceEeec--cCCCCceee--
Confidence 886543 3334455667888999999999999999875 4444322233343332222111 011111111
Q ss_pred CEEEEEEcCCcEEEEEcCC--CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 601 NRILAAGEDNQIKFWDMDN--VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.+.+.|...|.|..-.+.. -.++..+. ++...+.+++|.|..+.+++|..|..+.+||+...
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~--~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFN--GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEc--CcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence 1445555666666655443 33444444 44558999999999999999999999999998554
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.10 E-value=4.3e-08 Score=111.28 Aligned_cols=305 Identities=11% Similarity=0.041 Sum_probs=182.1
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCce
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSA 591 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v 591 (1131)
..++.++.+|.+..+|..+++................. ++..+++++. ++.++.+|..+|+.+....... .+
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~--~~ 137 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTE----KGEVIALDAEDGKELWRAKLSS--EV 137 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcC----CCEEEEEECCCCcEeeeeccCc--ee
Confidence 57888888999999999988888766555432222222 4666766654 7899999999999887655321 22
Q ss_pred EE-EEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCC---cceEEEcCCCCEEEEEECCCcEEEEecCCCchh
Q 001178 592 GV-VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS---LPRLRFNKEGNLLVVTTADQGIKILANADGLRA 667 (1131)
Q Consensus 592 ~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1131)
.+ ... .+..++.++.+|.|+.||..+|+.+........... ....... +..++.+..++.+..+|..++...
T Consensus 138 ~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 21 112 245788888899999999999998877654332100 0111222 346778888899999998877322
Q ss_pred hhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeee
Q 001178 668 LRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELT 747 (1131)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~ 747 (1131)
.. .... .|. + .. ...++.+.
T Consensus 214 W~-~~~~----------------------~~~-----------------------------g------~~-~~~~~~~~- 233 (377)
T TIGR03300 214 WE-QRVA----------------------LPK-----------------------------G------RT-ELERLVDV- 233 (377)
T ss_pred ee-eccc----------------------cCC-----------------------------C------CC-chhhhhcc-
Confidence 11 0000 000 0 00 00000000
Q ss_pred cccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccC
Q 001178 748 EIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTND 827 (1131)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 827 (1131)
.. ...+ .+..+++++.+|.+..||..+++ .+|....+
T Consensus 234 ------------------~~----~p~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~~------ 270 (377)
T TIGR03300 234 ------------------DG----DPVV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDAS------ 270 (377)
T ss_pred ------------------CC----ccEE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeeccC------
Confidence 00 0011 14456777778888777764321 23433210
Q ss_pred CCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCC-CCCeeEEEEeCCCCcEEEEEeCCCcEEEEEee
Q 001178 828 VPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR 905 (1131)
Q Consensus 828 ~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~ 905 (1131)
. ....+ .++..+.+++ +|.|..+|..+++.+...... ......... .+..|++++.+|.|+++|..
T Consensus 271 ---~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 271 ---S----YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred ---C----ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECC
Confidence 0 11122 2345555555 899999999999887665321 222233333 23477789999999999999
Q ss_pred cceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEE
Q 001178 906 VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFW 944 (1131)
Q Consensus 906 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lw 944 (1131)
+++.+..++.+...+..--...+ +.|+.++.||.|+.+
T Consensus 339 tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 339 DGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 99999888876654433222223 458889999988765
No 276
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.08 E-value=9e-10 Score=131.94 Aligned_cols=200 Identities=18% Similarity=0.294 Sum_probs=157.8
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
++-..|.++.=+|-.. +.+||+.||.|++|.+..+..+. .|+. .|. ..|+.+.|+.+|..+
T Consensus 2206 ~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~-----~~rt------------~g~-s~vtr~~f~~qGnk~ 2266 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVV-----CFRT------------AGN-SRVTRSRFNHQGNKF 2266 (2439)
T ss_pred cccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEE-----Eeec------------cCc-chhhhhhhcccCCce
Confidence 4667899999999887 48899999999999999887764 2322 133 789999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc---CCCcEEEEe--CCCceeEEecCCccC
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG---DDKLIRVWD--LSGRKLFQFEGHEAP 499 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s---~d~~i~iwd--~~~~~~~~~~~h~~~ 499 (1131)
..+..||.+.+|.+.. +.....+.|.....++.|-. . .+++++ .++.+.+|| ..+..-..-..|.+.
T Consensus 2267 ~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~g 2338 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGG 2338 (2439)
T ss_pred eeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCCC
Confidence 9999999999999873 34446788999999999986 3 466654 578999999 444433333789999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee
Q 001178 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 579 (1131)
++++++.|.. +.|++|+.+|.|++||++..+.+..+.. +. ...++++++. .|.+.||++.....
T Consensus 2339 aT~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2339 ATVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLSEFGL 2402 (2439)
T ss_pred ceEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEccccch
Confidence 9999997655 7999999999999999987776655443 33 4567777776 89999999998877
Q ss_pred eEEEeccc
Q 001178 580 KRTYIGFR 587 (1131)
Q Consensus 580 ~~~~~~~~ 587 (1131)
+..+...+
T Consensus 2403 l~~~p~e~ 2410 (2439)
T KOG1064|consen 2403 LHTFPSEH 2410 (2439)
T ss_pred hhcCchhh
Confidence 77766443
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.05 E-value=3e-08 Score=97.48 Aligned_cols=211 Identities=18% Similarity=0.124 Sum_probs=144.4
Q ss_pred CCcccccCCCcccceeeecc--CCCcEEEEEEec---CCCcEEEEEcCCCeEEEEECCCCccccc-ccceeecccccccc
Q 001178 326 SQQATWSLDDLPRAVACTMH--QGSSVVSMDFHP---FHHTLLVVGCGDGEITLWDVGLRERLVS-KPFKIWDMSNCSMM 399 (1131)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~--h~~~V~~~~fsp---dg~~llasg~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~ 399 (1131)
|++..++..+..-....++. .++.+..+.|+- +|...++-+-.+|.|.++.....+.... .++..
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------- 116 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------- 116 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch---------
Confidence 34555555554322222332 456677777763 4443566666788999987654332210 00000
Q ss_pred eeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCc
Q 001178 400 LQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479 (1131)
Q Consensus 400 ~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~ 479 (1131)
.+-....-.++.|++-|..++++..+|.+.+-+..... +.....+++|..+.+-..|+..... ++.+||+|+.
T Consensus 117 -----~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~ 189 (339)
T KOG0280|consen 117 -----KKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGS 189 (339)
T ss_pred -----hhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCce
Confidence 00001134578899999999999999998855544322 3444468899999999999987766 8999999999
Q ss_pred EEEEe--CCCceeEE-ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCC
Q 001178 480 IRVWD--LSGRKLFQ-FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG 553 (1131)
Q Consensus 480 i~iwd--~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g 553 (1131)
+..|| ..++.+.. .+.|...|.++.-++ +.+.+|++|+.|..|++||.++......-....+.|..+..+|.-
T Consensus 190 l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 190 LSCWDIRIPKTFIWHNSKVHTSGVVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI 265 (339)
T ss_pred EEEEEecCCcceeeecceeeecceEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence 99999 35666655 567999999998665 456899999999999999999766665444555779999999854
No 278
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=99.03 E-value=0.00016 Score=83.88 Aligned_cols=629 Identities=13% Similarity=0.106 Sum_probs=312.9
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECC-CCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVG-LRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.+.-+..-..+++|.+ ...|..+|.+...-+. +++......+++ -+-|...-..|+.+-++| .|
T Consensus 256 ~~t~~~~~~v~~~~~~-yLl~d~~G~Lf~l~l~~~~e~~s~~~lkv-------------e~lge~siassi~~L~ng-~l 320 (1096)
T KOG1897|consen 256 QSTIVCYGRVDLQGSR-YLLGDEDGMLFKLLLSHTGETVSGLDLKV-------------EYLGETSIASSINYLDNG-VL 320 (1096)
T ss_pred CceEEEcccccCCccE-EEEecCCCcEEEEEeecccccccceEEEE-------------EecCCcchhhhhhcccCc-eE
Confidence 3334444466778875 6668888987766665 555443211111 123555666777777777 55
Q ss_pred EEEeCCCeEEEEEecCCCcc----ceeeeeecCcCCeeEEEEecCC---CceEEEEEc---CCCcEEEEe--C--CCcee
Q 001178 425 GVAFTKHLIHLYTYQGSNDL----CQSLEIDAHVGGVNDLAFSYPN---KQLCIVTCG---DDKLIRVWD--L--SGRKL 490 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~V~~l~~s~d~---~~~~l~s~s---~d~~i~iwd--~--~~~~~ 490 (1131)
.+|+.-|.=.+-.+.+.... ....++ ..-++|.+++.-... +. -++||+ .||++||.. + +.-..
T Consensus 321 FvGS~~gdSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~-qivtCsGa~kdgSLRiiRngi~I~e~A~ 398 (1096)
T KOG1897|consen 321 FVGSRFGDSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQG-QIVTCSGAFKDGSLRIIRNGIGIDELAS 398 (1096)
T ss_pred EEeccCCceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCc-eEEEEeCCCCCCcEEEEecccccceeeE
Confidence 56766655455555432211 000111 234588888776543 22 466654 689999987 2 22223
Q ss_pred EEecCCccCeEEEe--ecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEc-cCCCEEEEEeecCCCCc
Q 001178 491 FQFEGHEAPVYSVC--PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYS-ADGSRLFSCGTSKEGDS 567 (1131)
Q Consensus 491 ~~~~~h~~~v~~~~--~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~~~~~~~ 567 (1131)
..+.| -..++.+. +.+..+. +++.+-.+.+ ++..+...-......+-......+..+ -.|+.|+-.. ..
T Consensus 399 i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~eT-rvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-----s~ 470 (1096)
T KOG1897|consen 399 IDLPG-IKGMWSLKSMVDENYDN-YLVLSFISET-RVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-----SN 470 (1096)
T ss_pred eecCC-ccceeEeeccccccCCc-EEEEEeccce-EEEEEccceEEeccccccccCceEEEEccCCceEEEEe-----cc
Confidence 34455 34566666 5554554 4443332222 223332211111111111112222222 1333333332 34
Q ss_pred eEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC--C-
Q 001178 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE--G- 644 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~--~- 644 (1131)
.|++++.. + ......... .++....+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- +
T Consensus 471 ~iRl~ss~-~-~~~~W~~p~--~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~ 545 (1096)
T KOG1897|consen 471 SIRLVSSA-G-LRSEWRPPG--KITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAP 545 (1096)
T ss_pred cEEEEcch-h-hhhcccCCC--ceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCC
Confidence 57777644 1 222233212 34444444455577777777888777777665 333333333347899999874 2
Q ss_pred ---CEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCC
Q 001178 645 ---NLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGA 721 (1131)
Q Consensus 645 ---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~ 721 (1131)
+++++|..+..+.+.-......... ...-..+.-+..++..
T Consensus 546 ~~s~~~aVG~Ws~~~~~l~~~pd~~~~~-----------------------------------~~~l~~~~iPRSIl~~- 589 (1096)
T KOG1897|consen 546 NKSRLLAVGLWSDISMILTFLPDLILIT-----------------------------------HEQLSGEIIPRSILLT- 589 (1096)
T ss_pred CcceEEEEEeecceEEEEEECCCcceee-----------------------------------eeccCCCccchheeeE-
Confidence 3788887766555543322211111 0000011111111100
Q ss_pred CccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCC
Q 001178 722 DSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ 801 (1131)
Q Consensus 722 ~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 801 (1131)
....+..++.++..||.+..+.+.......... ....-...++.=-.|+..+..-+.+.+|.-..+|.
T Consensus 590 --~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~----Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~------ 657 (1096)
T KOG1897|consen 590 --TFEGDIHYLLVALGDGALLYFVLDINTGQLSDR----KKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYS------ 657 (1096)
T ss_pred --EeeccceEEEEEcCCceEEEEEEEcccceEccc----cccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEe------
Confidence 111225678888888888777665422110000 00011223333444554444444444443333332
Q ss_pred CCCCccceeeeceeecCCCCcccccCCCCCCCCCeeE-EEecC--CCCEEEEEeCCeEEEEECCCcee--EEEEeCCCCC
Q 001178 802 NPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPC-VALSK--NDSYVMSAGGGKVSLFNMMNFKV--MTTFMSPPPA 876 (1131)
Q Consensus 802 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~-l~~s~--dg~~la~~~dg~i~vwd~~~~~~--~~~~~~~~~~ 876 (1131)
.+++++...+. -..+.. ..|+. -+..++.+..+.+++.-++.-+. ++++.. ...
T Consensus 658 -----------------~n~kLv~spls---~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~ 716 (1096)
T KOG1897|consen 658 -----------------SNGKLVYSPLS---LKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL-GES 716 (1096)
T ss_pred -----------------cCCcEEEeccc---hHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC-CCC
Confidence 12222221110 011111 11222 23467777777777776654322 333322 334
Q ss_pred eeEEEEeCCCCcEEEEEeCC--------------CcEEEEEeecceeEEeec--c--cccCeeEEEEccC-CCEEEEEeC
Q 001178 877 STFLAFHPQDNNIIAIGMED--------------STIQIYNVRVDEVKTKLK--G--HQKHITGLAFSTN-LNILVSSGS 937 (1131)
Q Consensus 877 i~~l~~s~~~~~~la~g~~d--------------g~I~iwd~~~~~~~~~~~--~--h~~~V~~l~~s~d-g~~l~s~~~ 937 (1131)
...+++.+ ...++++.+.. ..++++|-.+-+.+...+ . -.-.|.++.|..| +.++++|..
T Consensus 717 prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~ 795 (1096)
T KOG1897|consen 717 PRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTG 795 (1096)
T ss_pred hhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEE
Confidence 56667765 44444443321 125666655554433221 1 1124556668888 677777753
Q ss_pred ----------CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCC
Q 001178 938 ----------DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDV 1007 (1131)
Q Consensus 938 ----------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~ 1007 (1131)
.|.|.++............-.. ......+..--...++++-...|++|++.+.+..+.-..
T Consensus 796 ~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~------v~Gav~aL~~fngkllA~In~~vrLye~t~~~eLr~e~~--- 866 (1096)
T KOG1897|consen 796 LVYPDENEPVNGRIIVFEFEELNSLELVAETV------VKGAVYALVEFNGKLLAGINQSVRLYEWTTERELRIECN--- 866 (1096)
T ss_pred eeccCCCCcccceEEEEEEecCCceeeeeeee------eccceeehhhhCCeEEEecCcEEEEEEccccceehhhhc---
Confidence 4778888877632222111111 112223333344556677788999999998855444333
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEECC--CCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecC
Q 001178 1008 LSSPISSAAYSCNSQLIYATFTDGSIGVFDAD--SLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTD 1085 (1131)
Q Consensus 1008 ~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~D 1085 (1131)
+..++..+...-.|..+++|+.=+++.+-.+. .|.....-+... . .+-.++.+. ++..++-+..+
T Consensus 867 ~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~---------p--~Wmtaveil--~~d~ylgae~~ 933 (1096)
T KOG1897|consen 867 ISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYN---------P--NWMTAVEIL--DDDTYLGAENS 933 (1096)
T ss_pred ccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhC---------c--cceeeEEEe--cCceEEeeccc
Confidence 37789999999999999999987877765544 333433322211 1 122233332 34567778889
Q ss_pred CcEEEEecCCC
Q 001178 1086 GSVKVIEPSET 1096 (1131)
Q Consensus 1086 g~v~iW~~~~~ 1096 (1131)
|.+++-+..+.
T Consensus 934 gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 934 GNLFTVRKDSD 944 (1096)
T ss_pred ccEEEEEecCC
Confidence 99888877533
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=1.8e-09 Score=114.02 Aligned_cols=241 Identities=14% Similarity=0.236 Sum_probs=169.4
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCC-cc---ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCc
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN-DL---CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~-~~---~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~ 479 (1131)
.+.||+..|..++--.+.+.+++++.|++|++|.++... .. ....++..|+.+|.++-|..|-+ .++++ |+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 477999999999888888899999999999999997522 22 24457889999999999999988 56666 889
Q ss_pred EEEEe-CCCceeEEec-----CCccCeEEEeecccCCccEEEEE-ecCCeEEEEeCCCCceeEEec-----CCCceEEEE
Q 001178 480 IRVWD-LSGRKLFQFE-----GHEAPVYSVCPHQKENIHFIFST-AVDGKIKAWLYDNVGSRVDYD-----APGLWCTTM 547 (1131)
Q Consensus 480 i~iwd-~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~~-----~~~~~v~~~ 547 (1131)
|.+|| .-|+.+.... +..+.|.++ ++-+..++++| +...+|+++|.+..+-...+. +...-+.++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 99999 7787765332 222334444 33344566655 788999999998876555433 334468899
Q ss_pred EEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEE-EEcCCCeEEEEE
Q 001178 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF-WDMDNVNMLTST 626 (1131)
Q Consensus 548 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~ 626 (1131)
++.+.|+.++.+-. +|.|.+.|.++|+.+.......- ....++ .|..+.++....|.++.+ |..-.+......
T Consensus 883 aVa~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 883 AVADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred EeccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 99999999998876 89999999999998776553222 111121 344566777777888888 988777655544
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 627 ~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
+.... +... ...-|..+++......+.+|.-
T Consensus 957 kpppe--pahf--lqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 957 KPPPE--PAHF--LQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCCCc--chhh--hhccCceeEEeccCcEEEEEec
Confidence 43221 1110 1123666777777777888753
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.00 E-value=3.9e-09 Score=115.66 Aligned_cols=282 Identities=13% Similarity=0.265 Sum_probs=187.0
Q ss_pred ccCccccccCCCCC-cccccCCC-------cccceeeeccCCC--cEEEEEEecCCC-cEEEEEcCCCeEEEEECCCCcc
Q 001178 314 SQSVDEATYPVPSQ-QATWSLDD-------LPRAVACTMHQGS--SVVSMDFHPFHH-TLLVVGCGDGEITLWDVGLRER 382 (1131)
Q Consensus 314 ~~~~~~~~~s~~~~-~~~~~~~~-------~~~~~~~~~~h~~--~V~~~~fspdg~-~llasg~~dg~v~iwd~~~~~~ 382 (1131)
.+.+.++.++|.|+ ++..+... .|....+.+.|-. .|-.+.|||... .+-++......-.||++....-
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 44677788888886 33333322 2556666676654 677889988543 1234444556677888764332
Q ss_pred cccccceeecccccccceeceeccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEE
Q 001178 383 LVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLA 461 (1131)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~ 461 (1131)
.. ..-++.||+..|+.+-|.|. ...||+++.|-.+..||+.+... .+..+..-......++
T Consensus 104 ~a----------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVk 165 (1081)
T KOG0309|consen 104 NA----------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVK 165 (1081)
T ss_pred cc----------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceee
Confidence 11 12257899999999999995 45899999999999999988542 3334444445677899
Q ss_pred EecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe-c
Q 001178 462 FSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-D 538 (1131)
Q Consensus 462 ~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~ 538 (1131)
|+.... .+...+..+.|++|| ..+.++..+++|...|+.+.|..... ..+.+.+.||+|++||.+........ .
T Consensus 166 wnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~v 242 (1081)
T KOG0309|consen 166 WNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTV 242 (1081)
T ss_pred ecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceec
Confidence 988666 466677778999999 55677889999999999998864333 46889999999999999876554432 2
Q ss_pred CCCceEEEEEEccCCCEEEEEeecCCCCceEEE---------EeCCC-CeeeEEEecccCCceEEEEE--------eCCC
Q 001178 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE---------WNESE-GALKRTYIGFRKKSAGVVQF--------DTTR 600 (1131)
Q Consensus 539 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~v~~~~~--------s~~~ 600 (1131)
....+|..-.+.|-|.-..+.-. .++..+.+ |+..+ .+.+..|.||.+ .|.-.-| .-+.
T Consensus 243 tt~~piw~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~ 319 (1081)
T KOG0309|consen 243 TTNFPIWRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDS 319 (1081)
T ss_pred cccCcceeccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCc
Confidence 23345666667775543332211 11223333 33332 357888999876 3322222 1122
Q ss_pred --CEEEEEEcCCcEEEEEcCC
Q 001178 601 --NRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 601 --~~l~~~~~dg~i~iwd~~~ 619 (1131)
-.|++-+.|.++++|-+.+
T Consensus 320 rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 320 RDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cceeEEEeecCCceEeeeccH
Confidence 2689999999999998754
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.98 E-value=4.3e-07 Score=114.02 Aligned_cols=258 Identities=11% Similarity=0.096 Sum_probs=160.3
Q ss_pred eEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeC--C------------CCCeeEEEEeCCCCcEEEE-EeCCCcE
Q 001178 837 PCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS--P------------PPASTFLAFHPQDNNIIAI-GMEDSTI 899 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~~~~~la~-g~~dg~I 899 (1131)
..+++++++..+.++. .+.|++||..+. .+..+.. . -.....+++.+ ++..|++ -..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 4688988655444444 688999998654 3433322 1 12367899998 5554444 4456789
Q ss_pred EEEEeecceeEEeecc--c---------------ccCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeee---e
Q 001178 900 QIYNVRVDEVKTKLKG--H---------------QKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAI---Q 958 (1131)
Q Consensus 900 ~iwd~~~~~~~~~~~~--h---------------~~~V~~l~~s~-dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~---~ 958 (1131)
+++|..++.. .++.+ . -..-..++|+| ++..+++.+.++.|++||..++......-. .
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877653 22211 0 11235799999 566777778889999999987643211000 0
Q ss_pred cCCCC-----CCCCceEEEEcCCCcEEEEE--eCCeEEEEeCCCcccceeeec-------------CC-----CCCCCeE
Q 001178 959 LPAGK-----LPVGETRVQFHSDQVRLLVN--HETQLAIYDGSKMECIRQWVP-------------QD-----VLSSPIS 1013 (1131)
Q Consensus 959 ~~~~~-----~~~~v~~v~~s~d~~~l~~~--~d~~i~vwd~~~~~~~~~~~~-------------~~-----~~~~~v~ 1013 (1131)
...+. .-.....++++|++..|+++ .++.|++||+.++.......+ .. ..-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 00000 01345679999999866654 468999999987653211100 00 0011346
Q ss_pred EEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCcc-ccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEe
Q 001178 1014 SAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAY-MSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIE 1092 (1131)
Q Consensus 1014 ~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~ 1092 (1131)
+++|+++|.++++-..++.|++||..++........... ...........-.+..+++++ +++++++-+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 899999999888888899999999988776543321100 000001112223466788888 568999999999999999
Q ss_pred cCCCcc
Q 001178 1093 PSETER 1098 (1131)
Q Consensus 1093 ~~~~~~ 1098 (1131)
+.+.+.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 987653
No 282
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.93 E-value=1.3e-07 Score=93.20 Aligned_cols=271 Identities=13% Similarity=0.087 Sum_probs=168.2
Q ss_pred CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC---CCC-EEEEEeCCCeEEEEEecCCCcc
Q 001178 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP---DGN-FIGVAFTKHLIHLYTYQGSNDL 444 (1131)
Q Consensus 369 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp---dg~-~las~~~d~~i~vwd~~~~~~~ 444 (1131)
.|.+.+|++...+...... +.......+..|.|.- +|. .|+-+..+|.|.++........
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~----------------~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss 108 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDT----------------LQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS 108 (339)
T ss_pred ccceEEEeecccccCccce----------------eeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee
Confidence 4577888877665543111 1122345567777764 555 5677778899999987654332
Q ss_pred ceeeeeecCcC---CeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCce--eEEecCCccCeEEEeecccCCccEEEEEe
Q 001178 445 CQSLEIDAHVG---GVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK--LFQFEGHEAPVYSVCPHQKENIHFIFSTA 518 (1131)
Q Consensus 445 ~~~~~~~~h~~---~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 518 (1131)
.....+..-.- ...++.|++-+. -++++-.+|.+.+-+ ..... +++++.|+.+.+...|+.... +.+++|+
T Consensus 109 ~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGg 185 (339)
T KOG0280|consen 109 VHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGG 185 (339)
T ss_pred eeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC-ceEEecC
Confidence 21112222111 235778998888 588888889988666 33333 347889999999999875443 7999999
Q ss_pred cCCeEEEEeCCCCce-eEE-ecCCCceEEEEEEcc-CCCEEEEEeecCCCCceEEEEeCC-CCeeeEEEecccCCceEEE
Q 001178 519 VDGKIKAWLYDNVGS-RVD-YDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNES-EGALKRTYIGFRKKSAGVV 594 (1131)
Q Consensus 519 ~dg~i~~wd~~~~~~-~~~-~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~ 594 (1131)
+|+.+..||++..+. +.. ...|...|.++.-+| .+.++++|+. |-.|++||.+ .++++..-. -.+.|..+
T Consensus 186 DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kPl~~~~--v~GGVWRi 259 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKPLFKAK--VGGGVWRI 259 (339)
T ss_pred CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCccccCc--cccceEEE
Confidence 999999999994442 222 344666788888775 5789999988 8899999998 466654333 34578888
Q ss_pred EEeCCCC-EEEEEEcCCcEEEEEcCCCeEE--EEEecc-CCCCCcceEEEcCCCCEEEEEE-CCCcEE-EEecCCC
Q 001178 595 QFDTTRN-RILAAGEDNQIKFWDMDNVNML--TSTEAE-GGLPSLPRLRFNKEGNLLVVTT-ADQGIK-ILANADG 664 (1131)
Q Consensus 595 ~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~-~~~~~i~~v~~sp~~~~l~~~~-~dg~i~-iw~~~~~ 664 (1131)
..+|.-. .++.++.-+-.+|-+...+... ..+..+ .+..-...-.|......+++++ .|+.++ +|-..++
T Consensus 260 ~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 260 KHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 8888643 3344444444666666543222 111111 1211223333433335677754 466644 7765444
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.92 E-value=5.5e-09 Score=125.43 Aligned_cols=201 Identities=12% Similarity=0.214 Sum_probs=163.7
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
++.|-..|.++.=+|...+.++|+.||.|++|....+..+....+ .|. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-AGN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-cCc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 445667888999999999999999999999999988877654433 233 8899999999999 688888999999999
Q ss_pred CCCceeEEecCCccCeEEEeecccCCccEEEEE---ecCCeEEEEeCCCCcee-EEecCCCceEEEEEEccCCCEEEEEe
Q 001178 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST---AVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSADGSRLFSCG 560 (1131)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~ 560 (1131)
.+.+.....+.|......+.|.. ..++++ +.++.+.+||.-..... .....|.+.++++++-|..+.|++|+
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred cCCcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 88888888889998888888754 345555 35789999996543322 23477888999999999999999999
Q ss_pred ecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec
Q 001178 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
. +|.|++||++..++++.++. +. ...++++|+..|.++||++.....+..+..
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 7 99999999998888776653 33 567899999999999999998777666544
No 284
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.91 E-value=3.6e-07 Score=103.71 Aligned_cols=275 Identities=12% Similarity=0.063 Sum_probs=166.8
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEE
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVS 857 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~ 857 (1131)
+..+++++.+|.+..+|..+++ .+|....+.. .. ...+. ++..+++++ ++.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~-------------~~W~~~~~~~--------~~---~~p~v--~~~~v~v~~~~g~l~ 118 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGK-------------RLWRVDLDER--------LS---GGVGA--DGGLVFVGTEKGEVI 118 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCc-------------EeeeecCCCC--------cc---cceEE--cCCEEEEEcCCCEEE
Confidence 6678888888888777654322 2343322111 01 11222 355566665 89999
Q ss_pred EEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCe-----eEEEEccCCCEE
Q 001178 858 LFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI-----TGLAFSTNLNIL 932 (1131)
Q Consensus 858 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V-----~~l~~s~dg~~l 932 (1131)
.+|..+|+.+..............+ . ++ .++.++.+|.|+.||.++|+.+-........+ .+.... +..+
T Consensus 119 ald~~tG~~~W~~~~~~~~~~~p~v-~-~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v 193 (377)
T TIGR03300 119 ALDAEDGKELWRAKLSSEVLSPPLV-A-NG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGV 193 (377)
T ss_pred EEECCCCcEeeeeccCceeecCCEE-E-CC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEE
Confidence 9999999988776543221111222 1 33 56667889999999999998876655332211 111221 3467
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeecCCCCCC-C---Cc-eEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCC
Q 001178 933 VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP-V---GE-TRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDV 1007 (1131)
Q Consensus 933 ~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~-~---~v-~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~ 1007 (1131)
+.+..++.+..+|..+++...........+... . .+ ....+ .++..++.+.++.++.||..+|+.+......
T Consensus 194 ~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-- 270 (377)
T TIGR03300 194 LVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-- 270 (377)
T ss_pred EEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--
Confidence 788888999999999887544332221111100 0 00 11111 2444455567899999999999876554321
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCc
Q 001178 1008 LSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGS 1087 (1131)
Q Consensus 1008 ~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~ 1087 (1131)
...... .++..+++++.||.++.+|..+|+.+.+........ ... ..+ .+..+++++.||.
T Consensus 271 ---~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~-----~ss----p~i-----~g~~l~~~~~~G~ 331 (377)
T TIGR03300 271 ---SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ-----LTA----PAV-----VGGYLVVGDFEGY 331 (377)
T ss_pred ---CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCc-----ccc----CEE-----ECCEEEEEeCCCE
Confidence 111222 356778888889999999999998776553211000 011 112 2458889999999
Q ss_pred EEEEecCCCccccccccCC
Q 001178 1088 VKVIEPSETERKWGVAVPV 1106 (1131)
Q Consensus 1088 v~iW~~~~~~~~w~~~~p~ 1106 (1131)
|++||..+++..|....+.
T Consensus 332 l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 332 LHWLSREDGSFVARLKTDG 350 (377)
T ss_pred EEEEECCCCCEEEEEEcCC
Confidence 9999999999999877544
No 285
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=1.7e-07 Score=104.61 Aligned_cols=106 Identities=13% Similarity=0.296 Sum_probs=80.6
Q ss_pred EEEEecCCCcEEEEEcC----CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 352 SMDFHPFHHTLLVVGCG----DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 352 ~~~fspdg~~llasg~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
-..|+|... ++|+++- .|.|.||- ++|++-..-. ..- .+++++|+|..-.||.|
T Consensus 20 i~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~P~---hatSLCWHpe~~vLa~g 77 (1416)
T KOG3617|consen 20 ISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------YPV---HATSLCWHPEEFVLAQG 77 (1416)
T ss_pred ccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------cce---ehhhhccChHHHHHhhc
Confidence 347888776 6777643 47888884 5566443211 111 35679999999999999
Q ss_pred eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
-.-|.+.+|...+.+. ......|..+|..+.||++|. .++|+..-|.+.+|.
T Consensus 78 we~g~~~v~~~~~~e~---htv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 78 WEMGVSDVQKTNTTET---HTVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWR 129 (1416)
T ss_pred cccceeEEEecCCcee---eeeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEE
Confidence 9999999999877542 223456999999999999999 899999999999998
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=4e-09 Score=111.40 Aligned_cols=222 Identities=14% Similarity=0.199 Sum_probs=164.2
Q ss_pred EEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec-------ceeEEeecccccCeeEEEEccCCCEEEEEeCCC
Q 001178 867 MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-------DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA 939 (1131)
Q Consensus 867 ~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg 939 (1131)
+..+.+|...|..++--. +.+-+++++.|++|++|.++. ..+..++..|..+|.++.|-.|-++++++ ||
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 455778888888887665 666788999999999999863 24667888999999999999998888875 78
Q ss_pred cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCC--CcEEEEE--eCCeEEEEeCCCcccceeeecC--CCCCCCeE
Q 001178 940 QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD--QVRLLVN--HETQLAIYDGSKMECIRQWVPQ--DVLSSPIS 1013 (1131)
Q Consensus 940 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--~~~l~~~--~d~~i~vwd~~~~~~~~~~~~~--~~~~~~v~ 1013 (1131)
.|.+||.--++...... .....+.+..+..-+. ...+.++ ...+++++|.+.++....+..- ...+.-+.
T Consensus 805 giHlWDPFigr~Laq~~----dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQME----DAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cceeecccccchhHhhh----cCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 89999987765433222 1111233444444343 3344443 4789999999998877777543 22357789
Q ss_pred EEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEE-Ee
Q 001178 1014 SAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV-IE 1092 (1131)
Q Consensus 1014 ~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~i-W~ 1092 (1131)
+++..+.|++|+++-..|+|.+.|.++|+.+...++-.... +.++ .| ..+.|+....|.++.+ |-
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdl------------lqla-ap-sdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDL------------LQLA-AP-SDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchh------------hhhc-Cc-hhHHHHhhcccceeEeeeh
Confidence 99999999999999999999999999999887665422111 1122 23 2357888888999999 99
Q ss_pred cCCCccccccccCCCCC
Q 001178 1093 PSETERKWGVAVPVDNG 1109 (1131)
Q Consensus 1093 ~~~~~~~w~~~~p~~~~ 1109 (1131)
...+-+.....+|.|+.
T Consensus 947 aldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 947 ALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred hcCCeeeeccCCCCcch
Confidence 99998888888888764
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.88 E-value=1.2e-06 Score=87.14 Aligned_cols=210 Identities=18% Similarity=0.190 Sum_probs=141.1
Q ss_pred EEEecCCCCEEEEEeCCeEEEEECCCc--eeEEEEe---CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe
Q 001178 838 CVALSKNDSYVMSAGGGKVSLFNMMNF--KVMTTFM---SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1131)
Q Consensus 838 ~l~~s~dg~~la~~~dg~i~vwd~~~~--~~~~~~~---~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~ 912 (1131)
.++.+.||+.||+..|..|.|=..++. .++.+.. .....=+.++||| |+.+||.+...|+|++||+....+ ..
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FV 79 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EE
Confidence 367889999999999999888766542 2222222 3344567899999 999999999999999999875443 33
Q ss_pred ecc-c------ccCeeEEEEccC------CCEEEEEeCCCcEEEEEcCCC--ceeeeeeeecCCCCCCCCceEEEEcCCC
Q 001178 913 LKG-H------QKHITGLAFSTN------LNILVSSGSDAQLIFWNTDTW--EKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1131)
Q Consensus 913 ~~~-h------~~~V~~l~~s~d------g~~l~s~~~Dg~v~lwd~~~~--~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 977 (1131)
+.. + ...|.+|.|.+- ...|++..-+|.++-|-+..+ +.-..........+.+..|..+.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 322 1 346777777543 124666777888877776432 2212222222334455789999999999
Q ss_pred cEEEEEe-----C-------CeEEEEeCCCccccee--------------------------eecCCCCCCCeEEEEEcc
Q 001178 978 VRLLVNH-----E-------TQLAIYDGSKMECIRQ--------------------------WVPQDVLSSPISSAAYSC 1019 (1131)
Q Consensus 978 ~~l~~~~-----d-------~~i~vwd~~~~~~~~~--------------------------~~~~~~~~~~v~~i~~s~ 1019 (1131)
++|++|+ + ..+..|.+-++..... +.........|..|..||
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence 9888752 1 1356665433221111 000111256799999999
Q ss_pred CCCEEEEEecCCcEEEEECCCCceeeEecC
Q 001178 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 1020 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
||+.||+...+|.|.+|++.+.++......
T Consensus 240 dg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 240 DGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 999999999999999999999887776653
No 288
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.87 E-value=1.4e-06 Score=109.52 Aligned_cols=258 Identities=10% Similarity=0.110 Sum_probs=158.1
Q ss_pred EEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe-C
Q 001178 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-T 429 (1131)
Q Consensus 351 ~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~-~ 429 (1131)
..+++++++..++++-+.++.|++||............ ..... ..-..-..+-.....+++++++..|.++. .
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~-----g~~G~-~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST-----GEEGL-RDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC-----CCcCC-CCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 46889986545777778889999999864322110000 00000 00000011223467899999988766654 4
Q ss_pred CCeEEEEEecCCCccceeee-------eecC-------cCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecC
Q 001178 430 KHLIHLYTYQGSNDLCQSLE-------IDAH-------VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG 495 (1131)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~-------~~~h-------~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 495 (1131)
.+.|+++|..++. +..... ..+. -..-..++|+|++.. ++++.+.++.|++||.....+..+.+
T Consensus 645 n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~v~~~~G 722 (1057)
T PLN02919 645 NHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGVTRVFSG 722 (1057)
T ss_pred CceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCeEEEEec
Confidence 5689999987754 211100 0000 112368999995443 67888889999999944444433322
Q ss_pred C---------------ccCeEEEeecccCCcc-EEEEEecCCeEEEEeCCCCceeEEecC-------------C------
Q 001178 496 H---------------EAPVYSVCPHQKENIH-FIFSTAVDGKIKAWLYDNVGSRVDYDA-------------P------ 540 (1131)
Q Consensus 496 h---------------~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~-------------~------ 540 (1131)
. -.....+++++ ++. ++++.+.++.|++||++++.......+ .
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavsp--dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSP--DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeC--CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 1 12344577754 445 555667789999999987553221100 0
Q ss_pred --CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecc------------cCCceEEEEEeCCCCEEEEE
Q 001178 541 --GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF------------RKKSAGVVQFDTTRNRILAA 606 (1131)
Q Consensus 541 --~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~ 606 (1131)
......++++++|+.+++-.. ++.|++||..++......... .-.....++++++|+.+++-
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~----N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSY----NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECC----CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 012468899999987666554 889999999877655332110 00135678999999988888
Q ss_pred EcCCcEEEEEcCCCeE
Q 001178 607 GEDNQIKFWDMDNVNM 622 (1131)
Q Consensus 607 ~~dg~i~iwd~~~~~~ 622 (1131)
+.++.|++||+.+++.
T Consensus 877 t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 877 TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCEEEEEECCCCcc
Confidence 8899999999998764
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=8.9e-07 Score=99.94 Aligned_cols=197 Identities=12% Similarity=-0.012 Sum_probs=121.4
Q ss_pred CcEEEEEEecCCCcEEEEEcC---CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCG---DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
..+..-.|||||+++++..+. +..|.++|+.+|+... +....+.+...+|||||+.|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 378899999999864443322 3579999998887543 22244556678899999977
Q ss_pred EEEe-C--CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC--cEEEEeCCCceeEEecCCccC
Q 001178 425 GVAF-T--KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEGHEAP 499 (1131)
Q Consensus 425 as~~-~--d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~h~~~ 499 (1131)
+... . +..|.++|+.+++. . .+..+........|+|||+.+++ +....+ .|.+.|..+.....+......
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F-~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~ 322 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVF-VSDRLGYPNIFMKKLNSGSVEQVVFHGKN 322 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEE-EECCCCCceEEEEECCCCCeEeCccCCCc
Confidence 7543 2 34688888877652 2 23334433455689999997433 333333 577777544444333322111
Q ss_pred eEEEeecccCCccEEEEEecC---------CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEE
Q 001178 500 VYSVCPHQKENIHFIFSTAVD---------GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 570 (1131)
...| +++|+.|+..+.. ..|.+.|++++.... +... .......|+|||+.++..... .+...+.
T Consensus 323 --~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~-~~~~~L~ 395 (419)
T PRK04043 323 --NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYL-GNQSALG 395 (419)
T ss_pred --CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEcc-CCcEEEE
Confidence 2355 4566766655543 367777887765433 3222 223468899999999887643 3355677
Q ss_pred EEeCCC
Q 001178 571 EWNESE 576 (1131)
Q Consensus 571 iwd~~~ 576 (1131)
+.++..
T Consensus 396 ~~~l~g 401 (419)
T PRK04043 396 IIRLNY 401 (419)
T ss_pred EEecCC
Confidence 777754
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.82 E-value=1.2e-06 Score=85.33 Aligned_cols=227 Identities=13% Similarity=0.017 Sum_probs=145.1
Q ss_pred EEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecC
Q 001178 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQG 440 (1131)
Q Consensus 362 llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~ 440 (1131)
.||.|+..|...+|.+.+.+.... ....|...|+-+.=.-| .-.+..++.|.++++.+++.
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~------------------~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLY------------------QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred EEEeccccceeeeecccCccccee------------------eecccccchhhhhhhcccccceeeccCCcceeEEEEec
Confidence 589999999999999987665431 12223333322221112 22466788899999999987
Q ss_pred CCccceeeeeecCcC--CeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEE--ecCCccCeEEEeecccCCccEE
Q 001178 441 SNDLCQSLEIDAHVG--GVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQ--FEGHEAPVYSVCPHQKENIHFI 514 (1131)
Q Consensus 441 ~~~~~~~~~~~~h~~--~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l 514 (1131)
+.... .-|.. .+.++++++|++ ++++.++...|..|. .+++.+.. ....++.-.+..| +.....+
T Consensus 148 ~s~~~-----~~h~~~~~~ns~~~snd~~--~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~--s~~~~~F 218 (344)
T KOG4532|consen 148 DSNKF-----AVHNQNLTQNSLHYSNDPS--WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF--SENDLQF 218 (344)
T ss_pred Ccccc-----eeeccccceeeeEEcCCCc--eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee--ccCcceE
Confidence 65322 22433 388999999999 789999999999987 44444433 2223333445555 4455789
Q ss_pred EEEecCCeEEEEeCCCCceeE-----EecCCCceEEEEEEccCCCE-EEEEeecCCCCceEEEEeCCCCeeeEEEecccC
Q 001178 515 FSTAVDGKIKAWLYDNVGSRV-----DYDAPGLWCTTMLYSADGSR-LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK 588 (1131)
Q Consensus 515 ~s~s~dg~i~~wd~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 588 (1131)
++++.||++.|||++...... ....|.+.+..+.|++.|.. |+.-+. +-+.+.+.|+++++..+.+....+
T Consensus 219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeEEecCcc
Confidence 999999999999998765443 23447778999999986643 222221 367899999998876555433222
Q ss_pred -------CceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 589 -------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 589 -------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
..+...+|+.++..+.+..++ .+.-|++..
T Consensus 296 ~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 296 VERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred ccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 125556666666655555443 234455544
No 291
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=2.1e-06 Score=96.99 Aligned_cols=208 Identities=9% Similarity=0.035 Sum_probs=126.9
Q ss_pred eEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCc-EEEEEeCC---CcEEEEEeecceeEEeecccccCeeEEEEccCCC
Q 001178 855 KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNN-IIAIGMED---STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN 930 (1131)
Q Consensus 855 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~la~g~~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~ 930 (1131)
.|.+-|........ +... +.+....|+| |++ +++..+.+ ..|+++|+.+++...... ..+......|||||+
T Consensus 170 ~l~~~d~dg~~~~~-~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTYQKV-IVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCceeE-EccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 46666665444332 3322 3778899999 665 46654443 468999998886544433 455667789999998
Q ss_pred EEEEE-eC--CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCC----eEEEEeCCCcccceeee
Q 001178 931 ILVSS-GS--DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHET----QLAIYDGSKMECIRQWV 1003 (1131)
Q Consensus 931 ~l~s~-~~--Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~----~i~vwd~~~~~~~~~~~ 1003 (1131)
.|+.. +. +..|.++++.+++... +. ... .......|+|||+.|+..++. .|+++|+.+++..+...
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~---LT--~~~--~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQ---IT--NYP--GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEE---cc--cCC--CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 76643 33 3568888887765321 11 111 123345799999988876543 78999998877644332
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecC---------CcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCC
Q 001178 1004 PQDVLSSPISSAAYSCNSQLIYATFTD---------GSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQ 1074 (1131)
Q Consensus 1004 ~~~~~~~~v~~i~~s~dg~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~ 1074 (1131)
.. . ....|||||++|+..... ..|.+.|++++... .+.... . .....|+|
T Consensus 319 ~g---~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~----------~---~~~p~~SP- 377 (419)
T PRK04043 319 HG---K---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANG----------V---NQFPRFSS- 377 (419)
T ss_pred CC---C---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCC----------C---cCCeEECC-
Confidence 21 1 124899999988887743 26888898888643 332211 0 01268999
Q ss_pred CCCeEEEEec-CCcEEEEecC
Q 001178 1075 EPNQLAVGLT-DGSVKVIEPS 1094 (1131)
Q Consensus 1075 ~~~~l~s~~~-Dg~v~iW~~~ 1094 (1131)
|+..++..+. .+.-.+|-+.
T Consensus 378 DG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 378 DGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred CCCEEEEEEccCCcEEEEEEe
Confidence 4555554443 3443444444
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.80 E-value=5.4e-08 Score=100.43 Aligned_cols=167 Identities=17% Similarity=0.121 Sum_probs=110.0
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 428 (1131)
.+..+..+|.++ ++|++..+....++++..... . .+.++.. ....-...++.+..+......-.++
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~-~---~kl~~~~---------~v~~~~~ai~~~~~~~sv~v~dkag 129 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK-G---AKLLDVS---------CVPKRPTAISFIREDTSVLVADKAG 129 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC-c---ceeeeEe---------ecccCcceeeeeeccceEEEEeecC
Confidence 445566677776 688887777766666654432 1 1111111 1111223344444333333333344
Q ss_pred CCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe-cCCccCeEEEeec
Q 001178 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-EGHEAPVYSVCPH 506 (1131)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~h~~~v~~~~~~ 506 (1131)
....+.+|....+.+. .+-||-..+++++|+||++ +++++..|..|||-. ..-..+..| -||...|..++..
T Consensus 130 D~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT 203 (390)
T ss_pred CceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeeec
Confidence 5556666766654433 3679999999999999998 899999999999987 333344443 4899999999974
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCceeEEec
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD 538 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 538 (1131)
+ +..|+++|.|+++++||+.+++.+..+.
T Consensus 204 ~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 204 D---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred c---CceeeecCCCCcEEEEecccCCcccccc
Confidence 3 3568999999999999999988775443
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.79 E-value=4e-06 Score=83.51 Aligned_cols=219 Identities=20% Similarity=0.177 Sum_probs=137.0
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEEeecc--eeEEee---cccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001178 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVD--EVKTKL---KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954 (1131)
Q Consensus 880 l~~s~~~~~~la~g~~dg~I~iwd~~~~--~~~~~~---~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~ 954 (1131)
++.+. +|++||+- .|..|.|=..++. .++.+. +...-.-..++||||+..||.+...|+|+++|+...+...-
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 45566 88888754 6667777655432 222332 22333467899999999999999999999999987554322
Q ss_pred eeeecCCCCCCCCceEEEEcCCC-------cEEEEEeCCeEEEEeCCC-----cccceeeecCCCCCCCeEEEEEccCCC
Q 001178 955 IAIQLPAGKLPVGETRVQFHSDQ-------VRLLVNHETQLAIYDGSK-----MECIRQWVPQDVLSSPISSAAYSCNSQ 1022 (1131)
Q Consensus 955 ~~~~~~~~~~~~~v~~v~~s~d~-------~~l~~~~d~~i~vwd~~~-----~~~~~~~~~~~~~~~~v~~i~~s~dg~ 1022 (1131)
.+.....+.....|..+.|.+-. .+|+....|.++=|-+.. .+.-..+.....+...|+++.+.|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 22222233334567777776543 466777888888776532 223333333333467899999999999
Q ss_pred EEEEEec----C-------CcEEEEECCCCceeeEecCCccccC-------------------CCCCCCCccccEEEEEc
Q 001178 1023 LIYATFT----D-------GSIGVFDADSLRLRCRIAPSAYMSQ-------------------ASPNSSQTVFPLVVTSH 1072 (1131)
Q Consensus 1023 ~l~s~~~----d-------g~i~vwd~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~v~~~~v~~~ 1072 (1131)
+|++|+. | ..+..|.+-++..-........... ........|+ .+.-+
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmSlS 238 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMSLS 238 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEEEC
Confidence 9888882 1 2467787766544333211100000 0001122344 44556
Q ss_pred CCCCCeEEEEecCCcEEEEecCC--Cccccccc
Q 001178 1073 PQEPNQLAVGLTDGSVKVIEPSE--TERKWGVA 1103 (1131)
Q Consensus 1073 p~~~~~l~s~~~Dg~v~iW~~~~--~~~~w~~~ 1103 (1131)
| |+.+||+...+|+|.+|+++. .+++|...
T Consensus 239 P-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 239 P-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred C-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 7 789999999999999999974 45668765
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.78 E-value=2.8e-06 Score=89.74 Aligned_cols=226 Identities=16% Similarity=0.162 Sum_probs=141.3
Q ss_pred CCeEEEEECCCceeEEEEeCCC--CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCC
Q 001178 853 GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN 930 (1131)
Q Consensus 853 dg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~ 930 (1131)
+|+|..||..+++.+....... ....+..+ + ++..+++++.++.++.||..+|+.+-.... .+++.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 5889999999999998876421 22222233 2 344566678999999999999998876664 22222212 22355
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCCCC-
Q 001178 931 ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDVL- 1008 (1131)
Q Consensus 931 ~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~~~- 1008 (1131)
.++.++.|+.++.+|..+++............. ..........++..++++. ++.+..+|+.+|+.+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA--GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC--STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc--ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 667777888999999999887665322211111 1111222222366666655 899999999999998877664211
Q ss_pred CCC------eEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEE
Q 001178 1009 SSP------ISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVG 1082 (1131)
Q Consensus 1009 ~~~------v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~ 1082 (1131)
... +.+-....++ .++.++.++.+.-+|+.+++.+.... ... .. -.... .+..|+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~-----------~~---~~~~~-~~~~l~~~ 218 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISG-----------IY---SLPSV-DGGTLYVT 218 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS------------EC---ECEEC-CCTEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCC-----------cc---CCcee-eCCEEEEE
Confidence 111 2233333345 67777777764444999999664332 111 11 11223 45677777
Q ss_pred ecCCcEEEEecCCCccccc
Q 001178 1083 LTDGSVKVIEPSETERKWG 1101 (1131)
Q Consensus 1083 ~~Dg~v~iW~~~~~~~~w~ 1101 (1131)
+.|+.|..||+.+++..|.
T Consensus 219 ~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTEEEEEETTTTEEEEE
T ss_pred eCCCEEEEEECCCCCEEeE
Confidence 7999999999999999996
No 295
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.76 E-value=2.5e-07 Score=91.44 Aligned_cols=250 Identities=16% Similarity=0.212 Sum_probs=155.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCC--ccceeeeeecCc------------CCeeEEEEecCCCceEEE
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN--DLCQSLEIDAHV------------GGVNDLAFSYPNKQLCIV 472 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~------------~~V~~l~~s~d~~~~~l~ 472 (1131)
.....|+++.|...|.|||+|...|.|.+|.-.... ..+-..++++|. ..|..+.|..++..-.++
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 345679999999999999999988999999865432 122223456664 347889998877655777
Q ss_pred EEcCCCcEEEEeCCCceeEEec----------CCccCeEEEeecccCCccEEE-EEe-cCCeEEEEeCCCCceeEEecCC
Q 001178 473 TCGDDKLIRVWDLSGRKLFQFE----------GHEAPVYSVCPHQKENIHFIF-STA-VDGKIKAWLYDNVGSRVDYDAP 540 (1131)
Q Consensus 473 s~s~d~~i~iwd~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~l~-s~s-~dg~i~~wd~~~~~~~~~~~~~ 540 (1131)
..+.|++|++|.+-.+.+.... ...+++++..- ++. -.+ .|..|... .+...-..|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~-------l~lprls~hd~iiaa~-----p~rvyaNaH 171 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKE-------LLLPRLSEHDEIIAAK-----PCRVYANAH 171 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHH-------hhcccccccceEEEec-----cceeccccc
Confidence 7888999999994333222111 11222222110 000 000 11111111 112222457
Q ss_pred CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee---eEEEecccC----CceEEEEEeCCC-CEEEEEEcCCcE
Q 001178 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL---KRTYIGFRK----KSAGVVQFDTTR-NRILAAGEDNQI 612 (1131)
Q Consensus 541 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~----~~v~~~~~s~~~-~~l~~~~~dg~i 612 (1131)
...+.++.|+.|...++++- +-+|.+|++.-... +..+..|.- ..|++..|+|.. +.+.-.+..|.|
T Consensus 172 ~yhiNSiS~NsD~et~lSaD-----dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 172 PYHINSISFNSDKETLLSAD-----DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred eeEeeeeeecCchheeeecc-----ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 77899999999999999875 77899999764321 222222221 247778899875 455667788999
Q ss_pred EEEEcCCCeE------EEEEec--------cCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhcc
Q 001178 613 KFWDMDNVNM------LTSTEA--------EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETR 674 (1131)
Q Consensus 613 ~iwd~~~~~~------~~~~~~--------~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 674 (1131)
++-|++...+ +..... .+-...|..+.|+++|+++++-.. -+++|||......+++++.-|
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 9999874221 111110 111236788999999998886543 589999998776666655443
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.76 E-value=1.3e-07 Score=91.34 Aligned_cols=210 Identities=16% Similarity=0.243 Sum_probs=129.3
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 428 (1131)
.|+.+.|+-+- .|++|..++.+......++.+.. .|+-.. ..-+..++..|+++-.+-+.+--+..+++++
T Consensus 38 ~~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~--~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~ 108 (319)
T KOG4714|consen 38 KLSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDD--GIDPFKVLAKNSEIDPNDACTMTDNRVCIGY 108 (319)
T ss_pred EEEEeechhhh--eeecccchhheeeeccceEEEec-----hhhccc--CcCceeeeeccCCCCCcccccccCCceEecC
Confidence 37777777664 58899888888887776655543 121111 1112223445555555555555678899999
Q ss_pred CCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc-----CCCcEEEEeCC-CceeEEecCCccCeEE
Q 001178 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-----DDKLIRVWDLS-GRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s-----~d~~i~iwd~~-~~~~~~~~~h~~~v~~ 502 (1131)
.||.+.+.+.+.- ++....+..-...--+.+....+. .+.+++ .-+..+.|+.. .+.+..-......|.+
T Consensus 109 ~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 109 ADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CCceEEEEechHH--Hhhhhhcccccccccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999998762 221111221111122333444454 333332 11234455511 1111111112234899
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeE-EecCCCceEEEEEEcc-CCCEEEEEeecCCCCceEEEEeCCC
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
++-+|... +.+++|+.||.+-+||.++..... .+..|..++..+.|+| ++..|++++. +|.++.||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 99888665 788999999999999999875443 4567888999999998 6788999986 99999999765
No 297
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.75 E-value=5.8e-06 Score=85.33 Aligned_cols=210 Identities=17% Similarity=0.187 Sum_probs=146.7
Q ss_pred CeeEEEecC-CCCEEEEEe-CC-eEEEEECCCceeEEEEeCCCCCe--eEEEEeCCCCcEEEEEeC-----CCcEEEEEe
Q 001178 835 VVPCVALSK-NDSYVMSAG-GG-KVSLFNMMNFKVMTTFMSPPPAS--TFLAFHPQDNNIIAIGME-----DSTIQIYNV 904 (1131)
Q Consensus 835 ~i~~l~~s~-dg~~la~~~-dg-~i~vwd~~~~~~~~~~~~~~~~i--~~l~~s~~~~~~la~g~~-----dg~I~iwd~ 904 (1131)
....++.+| ++..++.+- -| ...+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 445688889 555666665 34 48999999999998887655442 3578999 8888887644 478999999
Q ss_pred e-cceeEEeecccccCeeEEEEccCCCEEEEEe------------------CCCcEEEEEcCCCceeeeeeeecCCCCCC
Q 001178 905 R-VDEVKTKLKGHQKHITGLAFSTNLNILVSSG------------------SDAQLIFWNTDTWEKRKSIAIQLPAGKLP 965 (1131)
Q Consensus 905 ~-~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~------------------~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~ 965 (1131)
. +.+.+..+..|.-.--.+.+.|||+.|+.+- ++-.+..-|..+++......+ +...+.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L--p~~~~~ 162 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL--PPDLHQ 162 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec--Cccccc
Confidence 9 6677888887766667788999998877763 233566667777765444322 223333
Q ss_pred CCceEEEEcCCCcEEEEEe-CC-------eEEEEeCCCcccceeeecC----CCCCCCeEEEEEccCCCEEEEEe-cCCc
Q 001178 966 VGETRVQFHSDQVRLLVNH-ET-------QLAIYDGSKMECIRQWVPQ----DVLSSPISSAAYSCNSQLIYATF-TDGS 1032 (1131)
Q Consensus 966 ~~v~~v~~s~d~~~l~~~~-d~-------~i~vwd~~~~~~~~~~~~~----~~~~~~v~~i~~s~dg~~l~s~~-~dg~ 1032 (1131)
..+..+++.++|..++... .+ -+.+++... .+..+... ......+-+|+++++|.++++++ .-+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 6899999999999877642 11 144444332 22222211 12257899999999999887776 6789
Q ss_pred EEEEECCCCceeeEecC
Q 001178 1033 IGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 1033 i~vwd~~~~~~~~~~~~ 1049 (1131)
+.+||..+++++.....
T Consensus 241 ~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPL 257 (305)
T ss_pred EEEEECCCCCEeecccc
Confidence 99999999998877654
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.70 E-value=8.9e-06 Score=92.63 Aligned_cols=309 Identities=9% Similarity=0.066 Sum_probs=171.3
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCc--eEE-----EEE--EccCCCEEEEEeecCCCCceEEEEeCCCCeeeEE
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL--WCT-----TML--YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~-----~~~--~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 582 (1131)
..++.++.+|.+.-+|.++++.+........ ... .+. ..-++..++.++. ++.++.+|.++|+.+..
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~----~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE----KGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC----CCEEEEEECCCCCCccc
Confidence 4677777788888888888877776544321 000 000 0113445555543 78999999999998877
Q ss_pred EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCC---cceEEEcCCCCEEEEEECCCcEEEE
Q 001178 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS---LPRLRFNKEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---i~~v~~sp~~~~l~~~~~dg~i~iw 659 (1131)
...... ......+ .+..++++..++.|+.+|..+|+.+........... ...... .+..++.++.+|.+..+
T Consensus 146 ~~~~~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~ 220 (394)
T PRK11138 146 TKVAGE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAV 220 (394)
T ss_pred ccCCCc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEE
Confidence 654221 1111122 245677888899999999999998877754321100 011111 13457778888999999
Q ss_pred ecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCC
Q 001178 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISD 739 (1131)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~ 739 (1131)
+..++..... .... .|. + .. .
T Consensus 221 d~~~G~~~W~-~~~~----------------------~~~-----------------------------~------~~-~ 241 (394)
T PRK11138 221 LMEQGQLIWQ-QRIS----------------------QPT-----------------------------G------AT-E 241 (394)
T ss_pred EccCChhhhe-eccc----------------------cCC-----------------------------C------cc-c
Confidence 9888743221 1000 000 0 00 0
Q ss_pred CCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCC
Q 001178 740 KTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPS 819 (1131)
Q Consensus 740 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 819 (1131)
.-++++. ...+ .+ .+..+++++.+|.+..+|...++ .+|...
T Consensus 242 ~~~~~~~-------------------~~sP----~v--~~~~vy~~~~~g~l~ald~~tG~-------------~~W~~~ 283 (394)
T PRK11138 242 IDRLVDV-------------------DTTP----VV--VGGVVYALAYNGNLVALDLRSGQ-------------IVWKRE 283 (394)
T ss_pred hhccccc-------------------CCCc----EE--ECCEEEEEEcCCeEEEEECCCCC-------------EEEeec
Confidence 0000000 0000 01 13445566667777666544321 234322
Q ss_pred CCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCC-CCeeEEEEeCCCCcEEEEEeCCC
Q 001178 820 NGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGMEDS 897 (1131)
Q Consensus 820 ~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg 897 (1131)
.+ . ...+.. ++..+..++ +|.+..+|..+++.+-...... ....+..+. + ..|++++.+|
T Consensus 284 ~~---------~----~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G 345 (394)
T PRK11138 284 YG---------S----VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEG 345 (394)
T ss_pred CC---------C----ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CEEEEEeCCC
Confidence 11 0 011222 334444444 8999999999998765443211 122233332 3 3567789999
Q ss_pred cEEEEEeecceeEEeecccccCeeE-EEEccCCCEEEEEeCCCcEEEEEc
Q 001178 898 TIQIYNVRVDEVKTKLKGHQKHITG-LAFSTNLNILVSSGSDAQLIFWNT 946 (1131)
Q Consensus 898 ~I~iwd~~~~~~~~~~~~h~~~V~~-l~~s~dg~~l~s~~~Dg~v~lwd~ 946 (1131)
.|+++|..+|+.+...+-....+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 346 ~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 346 YLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 9999999999988776544333332 222 2457888899999887764
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.70 E-value=7.4e-06 Score=84.60 Aligned_cols=187 Identities=11% Similarity=0.134 Sum_probs=130.3
Q ss_pred EEEecCCCCEEEEEe------CCeEEEEECC-CceeEEEEeCCCCCeeEEEEeCCCCcEEEEEe----------------
Q 001178 838 CVALSKNDSYVMSAG------GGKVSLFNMM-NFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM---------------- 894 (1131)
Q Consensus 838 ~l~~s~dg~~la~~~------dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~---------------- 894 (1131)
.-+||+||++|.+.. .|.|-|||.. +.+.+.++..+.-....+.+.| |++.|+++.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 468999999999874 3679999999 7888889988877788889999 776666552
Q ss_pred --CCCcEEEEEeecceeEEe--e--cccccCeeEEEEccCCCEEEEEeCCC-------cEEEEEcCCCceeeeeeeec-C
Q 001178 895 --EDSTIQIYNVRVDEVKTK--L--KGHQKHITGLAFSTNLNILVSSGSDA-------QLIFWNTDTWEKRKSIAIQL-P 960 (1131)
Q Consensus 895 --~dg~I~iwd~~~~~~~~~--~--~~h~~~V~~l~~s~dg~~l~s~~~Dg-------~v~lwd~~~~~~~~~~~~~~-~ 960 (1131)
.+-++...|..+|+++.+ + .-|.-.|..|++.++|..++..-..| -|-+++... ......... .
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~ 211 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQ 211 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHH
Confidence 123466677788888876 4 34888999999999987666543332 233443332 111111000 0
Q ss_pred CCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001178 961 AGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIG 1034 (1131)
Q Consensus 961 ~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~ 1034 (1131)
......-+-+|++++++.++++++ .+.+.+||..+++.+...... .+..++-.+++ ++++.+ .|.+.
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-----D~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-----DACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-----ceeeeeecCCc-eEEeCC-CccEE
Confidence 011225688999999999998865 788999999999998876554 57777777777 666655 44433
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.69 E-value=3.6e-07 Score=100.74 Aligned_cols=294 Identities=13% Similarity=0.206 Sum_probs=186.6
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
.++-...+.++.++|.|+. +|.++.-| +.+-|+...-... + | +..--.-.|..+.|||...
T Consensus 20 sl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~pp----r-~------------l~h~tpw~vad~qws~h~a 80 (1081)
T KOG0309|consen 20 SLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPP----R-W------------LHHITPWQVADVQWSPHPA 80 (1081)
T ss_pred EEEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCc----e-e------------eeccCcchhcceecccCCC
Confidence 3456678999999999986 67776554 4556665422111 0 0 0001112366677887543
Q ss_pred --EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCcc
Q 001178 423 --FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEA 498 (1131)
Q Consensus 423 --~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~ 498 (1131)
+-++......-.+|++.....-...+.+.||...|+++-|.|.... .+++++.|-.+..|| .-...+..+..-..
T Consensus 81 ~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 81 KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred CceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeecccc
Confidence 4444445556789998765544455668899999999999998887 899999999999999 33445555555555
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee-EEecCCCceEEEEEEccC-CCEEEEEeecCCCCceEEEEeCCC
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSAD-GSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
.-..++|+... ..+++.+..+.|++||.+.+... ..+.++...|+.+.|..- ...+.+++. +++|..||...
T Consensus 160 ~asqVkwnyk~--p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~----d~tvkfw~y~k 233 (1081)
T KOG0309|consen 160 AASQVKWNYKD--PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN----DGTVKFWDYSK 233 (1081)
T ss_pred cCceeeecccC--cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC----CCceeeecccc
Confidence 56778886543 24555666788999999877654 466777778888888753 334555544 99999999875
Q ss_pred CeeeEEEecccCCceEEEEEeCCCCEEEE--EEcCCcEEE---------EEcCC-CeEEEEEeccCCCCCcceEEEcC--
Q 001178 577 GALKRTYIGFRKKSAGVVQFDTTRNRILA--AGEDNQIKF---------WDMDN-VNMLTSTEAEGGLPSLPRLRFNK-- 642 (1131)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~i---------wd~~~-~~~~~~~~~~~~~~~i~~v~~sp-- 642 (1131)
...........+.++.--++.|-|.-.+. --.+..+.+ |+..+ ...++.+.+|.. .|....|-.
T Consensus 234 St~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~ 311 (1081)
T KOG0309|consen 234 STTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRK 311 (1081)
T ss_pred cccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhhhhcc
Confidence 44333333334446666666666542222 111113333 33333 245666665543 444333322
Q ss_pred --------CCCEEEEEECCCcEEEEecCCC
Q 001178 643 --------EGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 643 --------~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
..-.|++-+.|.++++|-+.+.
T Consensus 312 e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 312 ECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cccCCCCccceeEEEeecCCceEeeeccHH
Confidence 2346899999999999998654
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.69 E-value=1.8e-05 Score=90.18 Aligned_cols=212 Identities=10% Similarity=0.048 Sum_probs=124.0
Q ss_pred eCCeEEEEECCCceeEEEEeCCCCCe-----eEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeeccccc-------C
Q 001178 852 GGGKVSLFNMMNFKVMTTFMSPPPAS-----TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQK-------H 919 (1131)
Q Consensus 852 ~dg~i~vwd~~~~~~~~~~~~~~~~i-----~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~-------~ 919 (1131)
.++.|..+|..+|+.+-.+....... .+.... ++ .++.++.+|.+..+|..+|+.+-....... .
T Consensus 168 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 168 SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDR 244 (394)
T ss_pred CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhc
Confidence 36778888888887776665321110 111222 23 456677889999999888876544321100 0
Q ss_pred eeEEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcc
Q 001178 920 ITGLAFST--NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKME 997 (1131)
Q Consensus 920 V~~l~~s~--dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~ 997 (1131)
...+..+| .+..++.++.+|.+..+|..+++........ ....+.. .++..++.+.++.+..+|..+|+
T Consensus 245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--------SVNDFAV-DGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred ccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--------CccCcEE-ECCEEEEEcCCCeEEEEECCCCc
Confidence 11111122 2456777788999999999998765433211 1111222 23444455678999999999987
Q ss_pred cceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCC
Q 001178 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPN 1077 (1131)
Q Consensus 998 ~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~ 1077 (1131)
.+-...... .....+..+ .+.+|+.++.||.+++.|..+|+.+.+........ ... ++ + .+.
T Consensus 316 ~~W~~~~~~--~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~-----~s~---P~-~-----~~~ 377 (394)
T PRK11138 316 ELWSQSDLL--HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGF-----LSE---PV-V-----ADD 377 (394)
T ss_pred EEEcccccC--CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc-----eeC---CE-E-----ECC
Confidence 654332110 111222222 25577888999999999999999888775321000 011 11 1 235
Q ss_pred eEEEEecCCcEEEEec
Q 001178 1078 QLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1078 ~l~s~~~Dg~v~iW~~ 1093 (1131)
.|+.++.||.|..+++
T Consensus 378 ~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 378 KLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEeCCceEEEEeC
Confidence 7889999999998875
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.68 E-value=4.8e-05 Score=80.43 Aligned_cols=218 Identities=17% Similarity=0.120 Sum_probs=138.0
Q ss_pred eEEEecC-CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEe-CCCCcEEEEEeCCCcEEEEEeecceeEEee
Q 001178 837 PCVALSK-NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFH-PQDNNIIAIGMEDSTIQIYNVRVDEVKTKL 913 (1131)
Q Consensus 837 ~~l~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~~~~~la~g~~dg~I~iwd~~~~~~~~~~ 913 (1131)
.+++|.+ ++.++++-. .+.|..|+..+++... +..+. ...+++. + ++.+++ +.. +.+.++|..+++.....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~-~g~l~v-~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRP-DGRLYV-ADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECT-TSEEEE-EET-TCEEEEETTTTEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEcc-CCEEEE-EEc-CceEEEecCCCcEEEEe
Confidence 3678887 555555544 7889999998876644 32222 7778888 5 666655 444 45566698888654333
Q ss_pred cc-----cccCeeEEEEccCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEE
Q 001178 914 KG-----HQKHITGLAFSTNLNILVSSGSD--------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1131)
Q Consensus 914 ~~-----h~~~V~~l~~s~dg~~l~s~~~D--------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 980 (1131)
.. .....+.+++.++|++.++.... |.|..++.. ++.. ...... .....++|+||++.|
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~~------~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADGL------GFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEEE------SSEEEEEEETTSSEE
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE-EEecCc------ccccceEECCcchhe
Confidence 32 34567899999999988876654 456777766 3321 111111 445789999999988
Q ss_pred EEEe--CCeEEEEeCCCccc----ceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCcccc
Q 001178 981 LVNH--ETQLAIYDGSKMEC----IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMS 1054 (1131)
Q Consensus 981 ~~~~--d~~i~vwd~~~~~~----~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 1054 (1131)
++.. .+.|..|++..... ...+.......+....+++..+|++.++....+.|.+++.+ |+++..+....
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--- 224 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--- 224 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS---
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC---
Confidence 7654 67788888863222 12222221112348899999999988887788999999987 88888877432
Q ss_pred CCCCCCCCccccEEEEEcCCCCCeEEE
Q 001178 1055 QASPNSSQTVFPLVVTSHPQEPNQLAV 1081 (1131)
Q Consensus 1055 ~~~~~~~~~v~~~~v~~~p~~~~~l~s 1081 (1131)
-.+.+++|.-.+.+.|..
T Consensus 225 ---------~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 225 ---------PRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp ---------SSEEEEEEESTTSSEEEE
T ss_pred ---------CCEEEEEEECCCCCEEEE
Confidence 135578885334344433
No 303
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.67 E-value=0.00014 Score=71.06 Aligned_cols=138 Identities=9% Similarity=-0.013 Sum_probs=91.2
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCce
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSA 591 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v 591 (1131)
.+++.|+..+.+.--|..+++...+..... .+.+-+.- -|++++.+.. .+.+++.+..+|.....+.....-.+
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhhhcc
Confidence 466677777777777777766665433222 22222222 4777888887 88999999999988777764332122
Q ss_pred EEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001178 592 GVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658 (1131)
Q Consensus 592 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~i 658 (1131)
.....+++..+++|+.|++.+..|..+...+...+..+. ...+-+..|-...|+.+...|.+.-
T Consensus 98 -~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 98 -RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred -ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceEEE
Confidence 245677899999999999999999999999888776654 2334455553334444555554433
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.64 E-value=1.5e-06 Score=84.17 Aligned_cols=74 Identities=24% Similarity=0.457 Sum_probs=64.4
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeeccee-EEeecccccCeeEEEEccC-CCEEEEEeCCCcEEEEEcCC
Q 001178 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV-KTKLKGHQKHITGLAFSTN-LNILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~s~d-g~~l~s~~~Dg~v~lwd~~~ 948 (1131)
..|++++-+|...+++++|+.||.+-+||.+.... ...++.|..+|+.+-|+|. +..|+++++||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 34899999997788999999999999999987743 3457899999999999985 67899999999999999875
No 305
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.62 E-value=5.9e-06 Score=80.53 Aligned_cols=175 Identities=8% Similarity=-0.013 Sum_probs=120.4
Q ss_pred EEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEEecC
Q 001178 363 LVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSS--ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG 440 (1131)
Q Consensus 363 lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~~~~spdg~~las~~~d~~i~vwd~~~ 440 (1131)
+..++.|.++++.++..+..... -|. -.+.++++|+|++++++.+....|-.|.+..
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~---------------------~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~ 189 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFA---------------------VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD 189 (344)
T ss_pred eeeccCCcceeEEEEecCcccce---------------------eeccccceeeeEEcCCCceEEEecCCCcceEEEeCC
Confidence 45567788888888875543321 122 2388999999999999999999999999987
Q ss_pred CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CC-CceeE----EecCCccCeEEEeecccCCccEE
Q 001178 441 SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LS-GRKLF----QFEGHEAPVYSVCPHQKENIHFI 514 (1131)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~-~~~~~----~~~~h~~~v~~~~~~~~~~~~~l 514 (1131)
.............+..-.+..|+.... .+|++..||++.||| .. +.+.. +-..|.+.+..+.|++.+...+|
T Consensus 190 ~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLL 267 (344)
T KOG4532|consen 190 ESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLL 267 (344)
T ss_pred ccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEE
Confidence 554332223333445567889998887 799999999999999 32 22222 22358899999999876655677
Q ss_pred EEEecCCeEEEEeCCCCceeEEecCCC--------ceEEEEEEccCCCEEEEEe
Q 001178 515 FSTAVDGKIKAWLYDNVGSRVDYDAPG--------LWCTTMLYSADGSRLFSCG 560 (1131)
Q Consensus 515 ~s~s~dg~i~~wd~~~~~~~~~~~~~~--------~~v~~~~~s~~g~~l~~~~ 560 (1131)
+..-.-+.+.+.|+++......+.... ..|....|+.++..+.+..
T Consensus 268 f~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 268 FISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred EEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 777777899999998876544332221 1255556666555554443
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.60 E-value=5.6e-05 Score=79.87 Aligned_cols=184 Identities=14% Similarity=0.148 Sum_probs=119.9
Q ss_pred eeEEEec-CCCCEEEEEeCCeEEEEECCCceeEEEEeC-----CCCCeeEEEEeCCCCcEEEEEeCC--------CcEEE
Q 001178 836 VPCVALS-KNDSYVMSAGGGKVSLFNMMNFKVMTTFMS-----PPPASTFLAFHPQDNNIIAIGMED--------STIQI 901 (1131)
Q Consensus 836 i~~l~~s-~dg~~la~~~dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~~la~g~~d--------g~I~i 901 (1131)
...+++. ++++ ++++..+.+.++|..+++....... .......+++.| +|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~-l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSE-EEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCE-EEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 6677887 6655 4555555566669998866544432 345688999999 78877766544 44666
Q ss_pred EEeecceeEEeecccccCeeEEEEccCCCEEE-EEeCCCcEEEEEcCCCce--eeeeeeecCCCCCCCCceEEEEcCCCc
Q 001178 902 YNVRVDEVKTKLKGHQKHITGLAFSTNLNILV-SSGSDAQLIFWNTDTWEK--RKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 902 wd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~-s~~~Dg~v~lwd~~~~~~--~~~~~~~~~~~~~~~~v~~v~~s~d~~ 978 (1131)
++.. ++.... ...-...+.|+|+||++.|. +-+..+.|..+++..... ............ ......+++..+|+
T Consensus 120 ~~~~-~~~~~~-~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~ 196 (246)
T PF08450_consen 120 IDPD-GKVTVV-ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGN 196 (246)
T ss_dssp EETT-SEEEEE-EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-
T ss_pred ECCC-CeEEEE-ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCC
Confidence 6655 443333 33455678999999998765 566778899999864332 111222111111 13467899999998
Q ss_pred EEEEE-eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEc-cCCCEEEEEe
Q 001178 979 RLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYS-CNSQLIYATF 1028 (1131)
Q Consensus 979 ~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s-~dg~~l~s~~ 1028 (1131)
+.++. ..+.|.+++.+ |+.+..+... ...+++++|. ++.+.|+..+
T Consensus 197 l~va~~~~~~I~~~~p~-G~~~~~i~~p---~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPD-GKLLREIELP---VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEETTTEEEEEETT-SCEEEEEE-S---SSSEEEEEEESTTSSEEEEEE
T ss_pred EEEEEcCCCEEEEECCC-ccEEEEEcCC---CCCEEEEEEECCCCCEEEEEe
Confidence 77765 58899999988 8888877766 4589999994 6767666654
No 307
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.60 E-value=1.9e-06 Score=85.39 Aligned_cols=257 Identities=15% Similarity=0.247 Sum_probs=162.3
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeec-ccccccceeceeccC--CCCCEEEEEEcCCCC
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWD-MSNCSMMLQAAIVKD--SSISVSRVAWSPDGN 422 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--h~~~V~~~~~spdg~ 422 (1131)
..+.|++|.|...|.| ||+|...|.|.++.-.....- .++.+. ++ ++......++. -...|..+.|..++.
T Consensus 25 ead~ItaVefd~tg~Y-latGDkgGRVvlfer~~s~~c---eykf~teFQ--she~EFDYLkSleieEKin~I~w~~~t~ 98 (460)
T COG5170 25 EADKITAVEFDETGLY-LATGDKGGRVVLFEREKSYGC---EYKFFTEFQ--SHELEFDYLKSLEIEEKINAIEWFDDTG 98 (460)
T ss_pred ccceeeEEEeccccce-EeecCCCceEEEeeccccccc---chhhhhhhc--ccccchhhhhhccHHHHhhheeeecCCC
Confidence 5678999999999985 999988899999986543310 011000 00 00000001111 135688899887654
Q ss_pred --EEEEEeCCCeEEEEEecCCCc-------------------------cc--------------eeee-eecCcCCeeEE
Q 001178 423 --FIGVAFTKHLIHLYTYQGSND-------------------------LC--------------QSLE-IDAHVGGVNDL 460 (1131)
Q Consensus 423 --~las~~~d~~i~vwd~~~~~~-------------------------~~--------------~~~~-~~~h~~~V~~l 460 (1131)
.++..+.|++|++|.+..... +. +... -..|..-|.++
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 455567899999998754300 00 0001 14677778999
Q ss_pred EEecCCCceEEEEEcCCCcEEEEe--C-CCc-eeEEecCCc-----cCeEEEeecccCCccEEEEEecCCeEEEEeCCCC
Q 001178 461 AFSYPNKQLCIVTCGDDKLIRVWD--L-SGR-KLFQFEGHE-----APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV 531 (1131)
Q Consensus 461 ~~s~d~~~~~l~s~s~d~~i~iwd--~-~~~-~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 531 (1131)
.|..|.. .++++ +|-.|-+|+ . .+. .+..++.|. .-|++..|+|... ..+.-.+..|.|++-|++..
T Consensus 179 S~NsD~e--t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 179 SFNSDKE--TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred eecCchh--eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhhhh
Confidence 9999888 45554 577899999 2 222 233444443 4577888887554 56666777899999998732
Q ss_pred c------eeEE----------ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC-eeeEEEecccC------
Q 001178 532 G------SRVD----------YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRK------ 588 (1131)
Q Consensus 532 ~------~~~~----------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~------ 588 (1131)
. .... +......|..+.|+++|+++++-. -.++.+||.... .++.+...|..
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~l~ 329 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDELN 329 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHHHH
Confidence 1 1111 111223688899999999999875 568999998764 45666544321
Q ss_pred -----CceE---EEEEeCCCCEEEEEEcCCcEEEEEc
Q 001178 589 -----KSAG---VVQFDTTRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 589 -----~~v~---~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1131)
..|. -+.|+.+...+++|+..+..-++-.
T Consensus 330 d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 330 DVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred hhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 1222 3678888888888888777666653
No 308
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.58 E-value=5.8e-07 Score=93.00 Aligned_cols=160 Identities=15% Similarity=0.112 Sum_probs=102.3
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE----EeCCeEEEEeCCC
Q 001178 920 ITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV----NHETQLAIYDGSK 995 (1131)
Q Consensus 920 V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~----~~d~~i~vwd~~~ 995 (1131)
...+..++++++||++..+....++++...... ......... ......+.|..+.....+ |+...+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~-~kl~~~~~v--~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKG-AKLLDVSCV--PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCc-ceeeeEeec--ccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 344566777788888777777666666553321 111111000 023344555555544443 3456677777776
Q ss_pred cccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCC
Q 001178 996 MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQE 1075 (1131)
Q Consensus 996 ~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~ 1075 (1131)
+.+.. ..+ |-+.++.++||||+++|++++.|..|+|-.+..-..+..+- .+ |...|-.+++. +
T Consensus 142 ~~~~~-~lG---hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-----lG----H~eFVS~isl~----~ 204 (390)
T KOG3914|consen 142 GRCEP-ILG---HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC-----LG----HKEFVSTISLT----D 204 (390)
T ss_pred cCcch-hhh---hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc-----cc----cHhheeeeeec----c
Confidence 44433 233 47899999999999999999999999998876544433332 21 34445545553 5
Q ss_pred CCeEEEEecCCcEEEEecCCCccc
Q 001178 1076 PNQLAVGLTDGSVKVIEPSETERK 1099 (1131)
Q Consensus 1076 ~~~l~s~~~Dg~v~iW~~~~~~~~ 1099 (1131)
++.|++||.|++|++||+.++...
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred CceeeecCCCCcEEEEecccCCcc
Confidence 577999999999999999988765
No 309
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.7e-06 Score=88.92 Aligned_cols=290 Identities=14% Similarity=0.139 Sum_probs=189.4
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
.+.|.+.|+.|.-+-.. ++.+++.||.++.|.-..-.-+. + ..-+..|-+.|.+++.|-||.
T Consensus 5 symhrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvE---f-------------VKhFraHL~~I~sl~~S~dg~ 66 (558)
T KOG0882|consen 5 SYMHRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVE---F-------------VKHFRAHLGVILSLAVSYDGW 66 (558)
T ss_pred hhcccceeeeEeeehhh--eEEeeecchhhhhcCCCCcccee---e-------------hhhhHHHHHHHHhhhccccce
Confidence 34588888888776543 68999999999999754311110 0 012557888999999999999
Q ss_pred EEEEEeC-CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC-CCceEEEEEcCCCcEEEEe--CCCce-eEEecCCc
Q 001178 423 FIGVAFT-KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP-NKQLCIVTCGDDKLIRVWD--LSGRK-LFQFEGHE 497 (1131)
Q Consensus 423 ~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d-~~~~~l~s~s~d~~i~iwd--~~~~~-~~~~~~h~ 497 (1131)
++.+.+. |..++++|+++-..+.-. .+.--.+.+. ...++. -..++.++.-.++.+.|+| ..+.. ...-.-|.
T Consensus 67 L~~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~ 144 (558)
T KOG0882|consen 67 LFRSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHF 144 (558)
T ss_pred eEeeccCcccceeEEEeeccchhhhc-ccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccccc
Confidence 9999777 999999999875433111 1111122222 112222 1111344455788999999 34423 34445699
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCC------CceeE---------EecCCCceEEEEEEccCCCEEEEEeec
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN------VGSRV---------DYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~------~~~~~---------~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.+|..+.+.+.. +.+++....|.|.-|..+. ..... .+........++.|+|+|..+.+.+.
T Consensus 145 sPV~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~- 221 (558)
T KOG0882|consen 145 SPVKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP- 221 (558)
T ss_pred CceEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc-
Confidence 999999987655 5788888899999998773 11111 12223345789999999999999875
Q ss_pred CCCCceEEEEeCCCCeeeEEEec--------------------------------ccCCceEEEEEeCCCCEEEEEEcCC
Q 001178 563 KEGDSHLVEWNESEGALKRTYIG--------------------------------FRKKSAGVVQFDTTRNRILAAGEDN 610 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~--------------------------------~~~~~v~~~~~s~~~~~l~~~~~dg 610 (1131)
+..|++++..+|++++.+.. +.......+.|...+++|+-++-=|
T Consensus 222 ---DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g 298 (558)
T KOG0882|consen 222 ---DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG 298 (558)
T ss_pred ---ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee
Confidence 89999999998887654321 1111234477888899999887755
Q ss_pred cEEEEEcCCCeEEEEEeccCCCC-----------------------CcceEEEcCCCCEEEEEECCCcEEEE
Q 001178 611 QIKFWDMDNVNMLTSTEAEGGLP-----------------------SLPRLRFNKEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~-----------------------~i~~v~~sp~~~~l~~~~~dg~i~iw 659 (1131)
|++.++.++...+.+....... .-..+.+.+|..+++++-....++++
T Consensus 299 -ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 299 -IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred -EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 8899999888777653221100 00123355566666666666677766
No 310
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.55 E-value=0.00017 Score=75.64 Aligned_cols=206 Identities=19% Similarity=0.211 Sum_probs=133.5
Q ss_pred EEEecCCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEee-cceeEEe-
Q 001178 838 CVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-VDEVKTK- 912 (1131)
Q Consensus 838 ~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~-~~~~~~~- 912 (1131)
.+++|.||+++.+.. ...|.|-|+..++.+.++..+. +..+--++ ++-+.+-+.||.+.-..+. .|+....
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecC--CCceEEEecCCceEEEEECCCCCEeEee
Confidence 468889999988876 4679999999999999887543 33333333 3457788899999999887 4544322
Q ss_pred ---ecccccCe-eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC------CCCCCceEEEEcCCCcEEEE
Q 001178 913 ---LKGHQKHI-TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAG------KLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 913 ---~~~h~~~V-~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~------~~~~~v~~v~~s~d~~~l~~ 982 (1131)
+..-..++ ..-+++..+..++-.+-+|.|+--|+................ =.+..-..+++++....|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 21222222 234555556666667888988888888765433333332210 01134556889887776665
Q ss_pred ----EeC-------CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEECCCCceeeEecC
Q 001178 983 ----NHE-------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 983 ----~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
+.+ ..|.+||+.+++.+.++... .++.+|+.+.|.+ +|++.+ .++.+.+||..+|+.+..+..
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 211 24888899999999998764 3688999999888 665554 578999999999999998875
Q ss_pred Cc
Q 001178 1050 SA 1051 (1131)
Q Consensus 1050 ~~ 1051 (1131)
..
T Consensus 331 lG 332 (342)
T PF06433_consen 331 LG 332 (342)
T ss_dssp -S
T ss_pred cC
Confidence 33
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.52 E-value=1.9e-05 Score=93.23 Aligned_cols=273 Identities=9% Similarity=0.119 Sum_probs=164.2
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
....|.++.|-.++..++.+...|.+.+-|.++.... ..+.-...|.+++||||+
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-------------------------ivg~vd~GI~aaswS~De 121 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-------------------------IVGNVDNGISAASWSPDE 121 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee-------------------------eeeeccCceEEEeecCCC
Confidence 3478999999999999999999999877654432111 112357889999999999
Q ss_pred CEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce-----e------EEeec
Q 001178 846 SYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE-----V------KTKLK 914 (1131)
Q Consensus 846 ~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~-----~------~~~~~ 914 (1131)
+.++....+...++...+..++.....+. .-.+ .++.+ .+++...=.-+.-..|+ . .....
T Consensus 122 e~l~liT~~~tll~mT~~f~~i~E~~L~~------d~~~-~sk~v-~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~ 193 (1265)
T KOG1920|consen 122 ELLALITGRQTLLFMTKDFEPIAEKPLDA------DDER-KSKFV-NVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE 193 (1265)
T ss_pred cEEEEEeCCcEEEEEeccccchhcccccc------cccc-ccccc-eecccccceeeecchhhhcccccccccccccchh
Confidence 99999986444445444554443322111 0011 11222 22222111111111110 0 01111
Q ss_pred ccccCeeEEEEccCCCEEEEEe----CC-CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE----EeC
Q 001178 915 GHQKHITGLAFSTNLNILVSSG----SD-AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV----NHE 985 (1131)
Q Consensus 915 ~h~~~V~~l~~s~dg~~l~s~~----~D-g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~----~~d 985 (1131)
-.+.=+.+.|--||.++|+.. .+ +.|++||-+. .. ..........-.+++|-|.|..+++ ++|
T Consensus 194 -~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~L------ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd 265 (1265)
T KOG1920|consen 194 -QDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-AL------NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSD 265 (1265)
T ss_pred -hccCCceEEEccCCcEEEEEEEeccCCceeEEEecccc-hh------hcccCcccccccceeecCCCCeEeeeeecCCC
Confidence 122346789999999988832 23 7899999873 21 1111112244568999999999998 357
Q ss_pred CeEEEEeCCC---cccceeeecCCCCCCCeEEEEEccCCCEEEE---EecCCcEEEEECCCCceeeEecCCccccCCCCC
Q 001178 986 TQLAIYDGSK---MECIRQWVPQDVLSSPISSAAYSCNSQLIYA---TFTDGSIGVFDADSLRLRCRIAPSAYMSQASPN 1059 (1131)
Q Consensus 986 ~~i~vwd~~~---~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s---~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1059 (1131)
+.|.+|.-+. |+....+... ..++..++|+.++..|++ ......|++|-..+..---+.. -..+..
T Consensus 266 ~~IvffErNGL~hg~f~l~~p~d---e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~--l~~~~~--- 337 (1265)
T KOG1920|consen 266 SDIVFFERNGLRHGEFVLPFPLD---EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE--LQFSQK--- 337 (1265)
T ss_pred CcEEEEecCCccccccccCCccc---ccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE--Eecccc---
Confidence 7899998653 2222222222 344999999999999998 4455569999987654322221 111110
Q ss_pred CCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1060 SSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1060 ~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
. -+.|+|..+..|..-..+|.+.+.++.
T Consensus 338 ----~---~~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 338 ----A---LLMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred ----c---cccccCCCceeEEEEecCCcEEEEEEE
Confidence 1 178999888888887788887777764
No 312
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.6e-05 Score=82.31 Aligned_cols=248 Identities=14% Similarity=0.154 Sum_probs=145.1
Q ss_pred eccCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001178 404 IVKDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 482 (1131)
++.+|...|..++|||..+ +|..++.+.+|+|.|+++..++. .+..| ..+++++|.-|..+ ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 6788999999999999877 78889999999999999976544 45556 78999999999876 8899999999999
Q ss_pred Ee--CCCceeEEecC--CccCeEEEeeccc----CCccEEEEEecCCeEEEEeCCCCceeE--EecC-CCceEEEEEEcc
Q 001178 483 WD--LSGRKLFQFEG--HEAPVYSVCPHQK----ENIHFIFSTAVDGKIKAWLYDNVGSRV--DYDA-PGLWCTTMLYSA 551 (1131)
Q Consensus 483 wd--~~~~~~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~-~~~~v~~~~~s~ 551 (1131)
+| .....+..+.+ ...+|..++..+. +.+.+++..+.+ ...|.+....... .... ..+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99 33344444433 2334544432211 112233333322 3456543322211 1111 234566677776
Q ss_pred CCCEEEEEeecCCCCceE----EEEeCCCCeeeEEEeccc-CC---c---eEEEEEeCCCCEEEE-EEcCCcEEEEEcCC
Q 001178 552 DGSRLFSCGTSKEGDSHL----VEWNESEGALKRTYIGFR-KK---S---AGVVQFDTTRNRILA-AGEDNQIKFWDMDN 619 (1131)
Q Consensus 552 ~g~~l~~~~~~~~~~~~i----~iwd~~~~~~~~~~~~~~-~~---~---v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~ 619 (1131)
-.+.++....+...-.++ .--|-.+|..+...+... +. . -.++.-.++.++++. +.+.+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 556655544321111111 111223333332211111 10 0 111222345555554 55678899999999
Q ss_pred CeEEEEEeccCCCCCcceEEEcC-CC-CEEEEEECCCcEEEEecC
Q 001178 620 VNMLTSTEAEGGLPSLPRLRFNK-EG-NLLVVTTADQGIKILANA 662 (1131)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~sp-~~-~~l~~~~~dg~i~iw~~~ 662 (1131)
++.++.+.... +|.++.... ++ .+|++- .|..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 99999987763 566655433 33 355544 45578888654
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.46 E-value=3e-05 Score=81.86 Aligned_cols=193 Identities=18% Similarity=0.155 Sum_probs=120.7
Q ss_pred CCCEEEEE-eCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEee-cccc---c
Q 001178 844 NDSYVMSA-GGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL-KGHQ---K 918 (1131)
Q Consensus 844 dg~~la~~-~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~-~~h~---~ 918 (1131)
++..++++ .++.|..||..+|+.+.++.......... .. .+..+++++.++.++.+|..+|+.+-.. .... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-ee--cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 55556565 48999999999999998887532211222 22 2334556778889999999999988773 3221 1
Q ss_pred CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCC----CCceEEEEcCCCcEEEEEeCCeEEEEeCC
Q 001178 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP----VGETRVQFHSDQVRLLVNHETQLAIYDGS 994 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~----~~v~~v~~s~d~~~l~~~~d~~i~vwd~~ 994 (1131)
.........++..++.+..++.|..+|+++|+............... .....-....++..+++..++.+..+|+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETT
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECC
Confidence 12233333347888888889999999999998766655433221100 11122223334544444556654434999
Q ss_pred CcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceee
Q 001178 995 KMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC 1045 (1131)
Q Consensus 995 ~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1045 (1131)
+++.+-... . . .+.. ....++..|++++.++.|..||+.+|+...
T Consensus 192 tg~~~w~~~-~---~-~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 192 TGEKLWSKP-I---S-GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTEEEEEEC-S---S--ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCEEEEec-C---C-CccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 998553222 1 1 2222 145678888888899999999999998764
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.46 E-value=3.1e-06 Score=96.19 Aligned_cols=181 Identities=17% Similarity=0.210 Sum_probs=133.6
Q ss_pred CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeE
Q 001178 844 NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITG 922 (1131)
Q Consensus 844 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 922 (1131)
++..++.|+ ...+..+|+.+.+..+......+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445566666 788999999999888887765555665555 7789999999999999999999999999999999988
Q ss_pred EEEccCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCC--CcEEEEEeCCeEEEE
Q 001178 923 LAFSTNLNILVSSGS---------DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD--QVRLLVNHETQLAIY 991 (1131)
Q Consensus 923 l~~s~dg~~l~s~~~---------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--~~~l~~~~d~~i~vw 991 (1131)
+.. .|+.|+++|. |..|+|||+..-+.... ++.+. ...-+.|.|. .+..+++..|...+-
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--I~~~~-----~P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--IQFPY-----GPQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC--ccccc-----CchhhhhcccccceEEEEecccceeec
Confidence 766 4889999875 67899999988543322 22222 2244566664 344455678889888
Q ss_pred eCCCcc-c-ceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 001178 992 DGSKME-C-IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037 (1131)
Q Consensus 992 d~~~~~-~-~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd 1037 (1131)
|..+.. . ......+. ....+.++++|++|..||.|..+|.|.+|-
T Consensus 294 d~~~lsNP~~~~~~v~p-~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNP-NGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEcc-CCCcceeEEecCCCceEEEecccCcEeeec
Confidence 844321 1 11111111 145699999999999999999999999997
No 315
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=3.7e-05 Score=86.56 Aligned_cols=222 Identities=14% Similarity=0.155 Sum_probs=128.5
Q ss_pred EEEEEcCCCCEEEEEeC----CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeC-CC
Q 001178 413 SRVAWSPDGNFIGVAFT----KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SG 487 (1131)
Q Consensus 413 ~~~~~spdg~~las~~~----d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~-~~ 487 (1131)
+-..|+|...++|+++. .|.|-||-- +|+.- ...+.+-| +++++|+|..- +|+.|=.-|.+.+|.. +.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPq-r~Vt~P~h---atSLCWHpe~~--vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQ-RDVTYPVH---ATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec-CCCCC-ccccccee---hhhhccChHHH--HHhhccccceeEEEecCCc
Confidence 34679999889888853 478888853 44422 22233334 67899999876 7888888999999994 44
Q ss_pred ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC--C--Cc--eEEEEEEccCCCEEE---E
Q 001178 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--P--GL--WCTTMLYSADGSRLF---S 558 (1131)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~--~~--~v~~~~~s~~g~~l~---~ 558 (1131)
+.-.....|..+|..+.|+ ++|..++++..-|.+.+|.++..+....... | +. ...+...++++.-++ -
T Consensus 92 e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred eeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence 4444455799999999995 5668999999999999998875443332111 1 11 223444456543221 1
Q ss_pred EeecCCCCc--eEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcc
Q 001178 559 CGTSKEGDS--HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1131)
Q Consensus 559 ~~~~~~~~~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 636 (1131)
++-.+|..+ ...-|..+.. .+... -.-.|+|..++.++.+|+|+--|- .|+.....+... ..
T Consensus 170 aaVtgDe~alD~~fnwk~~~a--~rs~~---------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS----~v 233 (1416)
T KOG3617|consen 170 AAVTGDESALDEPFNWKESLA--ERSDE---------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDS----EV 233 (1416)
T ss_pred hhccCchhhhcccccCccchh--hcccc---------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccc----hH
Confidence 110111111 1122221111 11110 112467888889999999988774 455555544332 23
Q ss_pred eEEEcCCCCEEEEEECCCcEEEE
Q 001178 637 RLRFNKEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 637 ~v~~sp~~~~l~~~~~dg~i~iw 659 (1131)
.+-|.+...-+++-..+-.+.++
T Consensus 234 QmLf~~~~eai~~i~e~lr~~l~ 256 (1416)
T KOG3617|consen 234 QMLFMGYCEAISIIIEFLRDCLI 256 (1416)
T ss_pred HHHHhcccceEEEEeeeceeeEE
Confidence 44555544444444444444443
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.41 E-value=9.1e-07 Score=89.19 Aligned_cols=166 Identities=16% Similarity=0.112 Sum_probs=123.2
Q ss_pred EEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCC
Q 001178 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK 430 (1131)
Q Consensus 351 ~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d 430 (1131)
+.++||-+-.-.-++.+.+-.|-+-|+++|-... + ...+.|.++.|...+.++..|..+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccC
Confidence 3346664422122444557788999998875432 2 246789999999989999999999
Q ss_pred CeEEEEEecCCCc--cceeeeeecCcCCeeEEEEec-CCCceEEEEEcCCCcEEEEe-CCCce---eEEecCCccCeEEE
Q 001178 431 HLIHLYTYQGSND--LCQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDDKLIRVWD-LSGRK---LFQFEGHEAPVYSV 503 (1131)
Q Consensus 431 ~~i~vwd~~~~~~--~~~~~~~~~h~~~V~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~~~~---~~~~~~h~~~v~~~ 503 (1131)
|.|.++|++.+.. ..+... .-|...|+++.... +++ +|++.+.+|.|++|| ..-++ +..+.||...-.-+
T Consensus 274 geI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 9999999987522 112222 34899999998887 555 789999999999999 44444 88999998776666
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 540 (1131)
-++..+....++++++|-..|+|.++.+....++...
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 6666666678999999999999999988777665543
No 317
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.41 E-value=7.6e-07 Score=62.53 Aligned_cols=39 Identities=28% Similarity=0.572 Sum_probs=37.1
Q ss_pred ceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEE
Q 001178 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945 (1131)
Q Consensus 907 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd 945 (1131)
++++..+++|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 318
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.41 E-value=0.00012 Score=82.92 Aligned_cols=184 Identities=9% Similarity=0.005 Sum_probs=118.3
Q ss_pred EEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC----cEEEEEeecceeEEe
Q 001178 839 VALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS----TIQIYNVRVDEVKTK 912 (1131)
Q Consensus 839 l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg----~I~iwd~~~~~~~~~ 912 (1131)
+=+++||+.+...+ .+.+.+.|.++.+...++.... ....++++| +++++++.+.+. ++...+..+...+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 34567888775554 5779999999988887776533 557789999 777777775322 233332222111111
Q ss_pred ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCC----CceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CC
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT----WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ET 986 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~----~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~ 986 (1131)
+.-. . .-++.++|++... .++.|.+.|..+ +.. ....+ +.+ .....+.++|||++++++. +.
T Consensus 276 fni~--~--iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~-v~~yI--PVG---KsPHGV~vSPDGkylyVanklS~ 343 (635)
T PRK02888 276 FNIA--R--IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSA-LTRYV--PVP---KNPHGVNTSPDGKYFIANGKLSP 343 (635)
T ss_pred EchH--H--HHHhhhCCCEEEE--CCCEEEEEECCccccCCcc-eEEEE--ECC---CCccceEECCCCCEEEEeCCCCC
Confidence 1100 0 0134557877665 367899999887 221 11112 222 4566799999999999864 88
Q ss_pred eEEEEeCCCccc------------ceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 001178 987 QLAIYDGSKMEC------------IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 987 ~i~vwd~~~~~~------------~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
.+.|+|+.+.+. +.+... ...-...+|.++|....+-..|..|..|++.+
T Consensus 344 tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999999987553 223222 22334668999999888888999999999986
No 319
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=9.8e-06 Score=84.84 Aligned_cols=213 Identities=11% Similarity=0.152 Sum_probs=143.9
Q ss_pred cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCC----ceeEEecCCccCeEEEeecccCCccEEEEEec-CCeEEEE
Q 001178 452 AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG----RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DGKIKAW 526 (1131)
Q Consensus 452 ~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~~w 526 (1131)
-|...|+.+.-+.. + ++.+++.||.++.|..+. +.+..+..|.+.|.+++.+ -++..+.|.+. |..++++
T Consensus 7 mhrd~i~hv~~tka-~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S--~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-K--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS--YDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeehh-h--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc--ccceeEeeccCcccceeEE
Confidence 47777777766543 3 799999999999999433 2345567888888888874 45577888777 9999999
Q ss_pred eCCCCceeEEecCCCceEEEEEEccCC--CEEEEEeecCCCCceEEEEeCCCCe-eeEEEecccCCceEEEEEeCCCCEE
Q 001178 527 LYDNVGSRVDYDAPGLWCTTMLYSADG--SRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRI 603 (1131)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l 603 (1131)
|+++......+....-+=.+-.+...| .-+++.+. -.++.+.++|-.... ....+.+.+-.+|..+.+.+.+..+
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred EeeccchhhhcccccCCCceEEecCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 988755442211111111111122223 22222221 237889999976543 4455566666699999999999999
Q ss_pred EEEEcCCcEEEEEcCC------CeEEEEEec-------cCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhh
Q 001178 604 LAAGEDNQIKFWDMDN------VNMLTSTEA-------EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRA 670 (1131)
Q Consensus 604 ~~~~~dg~i~iwd~~~------~~~~~~~~~-------~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 670 (1131)
++....|.|.-|.... .+....++. ........++.|+|+|..+.+-+.|..|+++...++ +..+.
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqe 238 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQE 238 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhhh
Confidence 9999999999999873 111111111 112235689999999999999999999999999988 55555
Q ss_pred hh
Q 001178 671 IE 672 (1131)
Q Consensus 671 ~~ 672 (1131)
+.
T Consensus 239 iD 240 (558)
T KOG0882|consen 239 ID 240 (558)
T ss_pred hh
Confidence 53
No 320
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=3.9e-07 Score=102.28 Aligned_cols=201 Identities=17% Similarity=0.198 Sum_probs=146.4
Q ss_pred eeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCC--cEE
Q 001178 865 KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA--QLI 942 (1131)
Q Consensus 865 ~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg--~v~ 942 (1131)
+..+.|..+...-+|++|+- +.++|++|+..|.|++|++.+|........|..+|+-+.-+.||..+.+.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 34556677788899999999 889999999999999999999999999999999999999999999877665533 467
Q ss_pred EEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecC-CCCCCCeEEEEEccC
Q 001178 943 FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQ-DVLSSPISSAAYSCN 1020 (1131)
Q Consensus 943 lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~-~~~~~~v~~i~~s~d 1020 (1131)
+|+..+--. ..|.-....++.|+....+-+.|. .....+||+.++....++... ...+..-+++.|||+
T Consensus 1171 LW~~~s~~~---------~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1171 LWDASSTGG---------PRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred HhccccccC---------ccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence 999876111 111124567788888766555554 456789999999888775433 222333478899999
Q ss_pred CCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCccc
Q 001178 1021 SQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERK 1099 (1131)
Q Consensus 1021 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~ 1099 (1131)
.++++- || .+||++..+.+.++....-.. .=.|||+ ++.++.-++ |||+.+-...
T Consensus 1242 D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~-------------~G~FHP~-g~eVIINSE-----IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1242 DTLILN---DG--VLWDVRIPEAIHRFDQFTDYG-------------GGGFHPS-GNEVIINSE-----IWDMRTFKLL 1296 (1516)
T ss_pred cceEee---Cc--eeeeeccHHHHhhhhhheecc-------------cccccCC-CceEEeech-----hhhhHHHHHH
Confidence 998885 44 579999887777766444111 1257884 566666553 7887665543
No 321
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.37 E-value=0.00026 Score=74.28 Aligned_cols=137 Identities=9% Similarity=0.055 Sum_probs=89.1
Q ss_pred CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEee--c----CCCCceEEEEeCCCCeeeEEEecccC------
Q 001178 521 GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT--S----KEGDSHLVEWNESEGALKRTYIGFRK------ 588 (1131)
Q Consensus 521 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~----~~~~~~i~iwd~~~~~~~~~~~~~~~------ 588 (1131)
+++.++|.++++.+-.+... ..-.+..+||++.++++.. + +.-.-.|.+||..+-.....+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 47888888777655444322 2334678999999987653 1 11234689999999877765543221
Q ss_pred CceEEEEEeCCCCEEEEE--EcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 589 KSAGVVQFDTTRNRILAA--GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 589 ~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
......+++.+++++++. +-..+|.|-|+..++.+..+...+. ..+--+++ +-+.+-+.||.+.-..+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----WLIYPSGN-RGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE----EEEEEEET-TEEEEEETTSCEEEEEETST
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE----EEEEecCC-CceEEEecCCceEEEEECCC
Confidence 112236788999988874 4466799999999999988876652 22222222 45778889999998888643
No 322
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=3.9e-06 Score=85.97 Aligned_cols=120 Identities=14% Similarity=0.182 Sum_probs=99.1
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHhcCCCc--------cHHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHHH
Q 001178 5 SRELVFLILQFLDEEKFKESVHRLEQESGFFF--------NMKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEI 76 (1131)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~--------~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1131)
+.-+-|+|..||..+||..+|..|-++|.+.- ++...+++|++|+...|+...+.-..-.. +....+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHH
Confidence 45578999999999999999999999999851 37788999999999999888765411111 1222378999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccc
Q 001178 77 RKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFR 125 (1131)
Q Consensus 77 ~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~ 125 (1131)
..|.|+||+..+++.+|+.+.++++.|.......+++....+|.++...
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t 242 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYT 242 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcccc
Confidence 9999999999999999999999999999876778888888898886554
No 323
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.33 E-value=0.016 Score=68.02 Aligned_cols=601 Identities=11% Similarity=0.050 Sum_probs=286.5
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC--
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG-- 421 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg-- 421 (1131)
++..+-..|+..-++| +|.+|+.-|.=++-.+.+......+.. ....+ ..-++|..++.-.+.
T Consensus 303 lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~~------------ilet~-~NLgPI~Dm~Vvd~d~q 367 (1096)
T KOG1897|consen 303 LGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYVV------------ILETF-VNLGPIVDMCVVDLDRQ 367 (1096)
T ss_pred cCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchhh------------hhhhc-ccccceeeEEEEecccc
Confidence 3444555667777777 588898877666666654332211000 00001 122477777765432
Q ss_pred --CEEEEEe---CCCeEEEEEecCCCccceeeeeecCcCCeeEEE--EecCCCceEEEEEcCCCcEEEEeCCCceeE-Ee
Q 001178 422 --NFIGVAF---TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLA--FSYPNKQLCIVTCGDDKLIRVWDLSGRKLF-QF 493 (1131)
Q Consensus 422 --~~las~~---~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~--~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~-~~ 493 (1131)
..+++|+ .||++++..-.-+-.......+.| -..++.+. +.+.-.. +++.+-- +.-++...+++... ..
T Consensus 368 ~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~-~eTrvl~i~~e~ee~~~ 444 (1096)
T KOG1897|consen 368 GQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFI-SETRVLNISEEVEETED 444 (1096)
T ss_pred CCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEec-cceEEEEEccceEEecc
Confidence 3555553 478888876433322222224555 44567776 4443332 2333322 23344454444211 12
Q ss_pred cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEe
Q 001178 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573 (1131)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 573 (1131)
.+.......+..+... ++.|+-.. ...||+++-. .....+..... ++....+.+...++.++. ++.+...+
T Consensus 445 ~gf~~~~~Tif~S~i~-g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~----~~~l~y~~ 515 (1096)
T KOG1897|consen 445 PGFSTDEQTIFCSTIN-GNQLVQVT-SNSIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAGG----GLALFYLE 515 (1096)
T ss_pred ccccccCceEEEEccC-CceEEEEe-cccEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEecC----ccEEEEEE
Confidence 2222333333322211 12222221 2345665533 12222232222 333444445555666553 55666666
Q ss_pred CCCCeeeEEEecccCCceEEEEEeCCC------CEEEEEEcCCcEEEEE-cCCCeEEEEEec--cCCCCCcceEEEcCCC
Q 001178 574 ESEGALKRTYIGFRKKSAGVVQFDTTR------NRILAAGEDNQIKFWD-MDNVNMLTSTEA--EGGLPSLPRLRFNKEG 644 (1131)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~~~~~dg~i~iwd-~~~~~~~~~~~~--~~~~~~i~~v~~sp~~ 644 (1131)
+..+.+...........+.|+.++|-+ +.+++|..+..+.+.- ......+..... ..-...|.-..+-.|.
T Consensus 516 i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~ 595 (1096)
T KOG1897|consen 516 IEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDI 595 (1096)
T ss_pred eeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccc
Confidence 666654333333334478899888753 2677777665554433 333333322211 1111234445566678
Q ss_pred CEEEEEECCCcEEEEecCCCchhhhhhh---ccccccccccccccccCccceecccccccccccccCCCCCCccccccCC
Q 001178 645 NLLVVTTADQGIKILANADGLRALRAIE---TRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGA 721 (1131)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~ 721 (1131)
.+|.++..||.+.-+.+....-.....+ ....++..-....+....+.+.+-.|.......++--..+-..+-+...
T Consensus 596 ~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~ 675 (1096)
T KOG1897|consen 596 HYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHM 675 (1096)
T ss_pred eEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhh
Confidence 8999999999988776544321111111 0011111000001111111111111211111111100000000000000
Q ss_pred CccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCC
Q 001178 722 DSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ 801 (1131)
Q Consensus 722 ~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 801 (1131)
...........+.....+.+++..++....... .++|. ......+++.+....+.+.+....... +
T Consensus 676 c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~i---rtvpl----~~~prrI~~q~~sl~~~v~s~r~e~~~------~- 741 (1096)
T KOG1897|consen 676 CPFNSDAYPDSLASANGGALTIGTIDEIQKLHI---RTVPL----GESPRRICYQESSLTFGVLSNRIESSA------E- 741 (1096)
T ss_pred cccccccCCceEEEecCCceEEEEecchhhcce---eeecC----CCChhheEecccceEEEEEecccccch------h-
Confidence 000011111112222234555555554332111 11222 234456667664444444443221110 0
Q ss_pred CCCCccceeeeceeecCCCCcccccCCCC--CCCCCeeEEEecCC-CCEEEEEe-----------CCeEEEEECCCceeE
Q 001178 802 NPSGKATAAVAPQHWQPSNGLLMTNDVPE--NAEDVVPCVALSKN-DSYVMSAG-----------GGKVSLFNMMNFKVM 867 (1131)
Q Consensus 802 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--~~~~~i~~l~~s~d-g~~la~~~-----------dg~i~vwd~~~~~~~ 867 (1131)
..+.....-.++++|.++-+.+...-.. .....+.++.|..| +.++++|. .|.|.||.+..+..+
T Consensus 742 -~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L 820 (1096)
T KOG1897|consen 742 -YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL 820 (1096)
T ss_pred -hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce
Confidence 0111112224567777776654421111 12233444458777 77888772 267888887774443
Q ss_pred EEEeC--CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEE
Q 001178 868 TTFMS--PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945 (1131)
Q Consensus 868 ~~~~~--~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd 945 (1131)
+.... -.+.+.++..- +++++| +-+..|++|++.+.+.+..-..|..++..+...-.|..++.|.--+.+.+-.
T Consensus 821 ~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 821 ELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQ 896 (1096)
T ss_pred eeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence 33322 23445554433 577775 4567899999999987877778999999999999999999999888777665
Q ss_pred cCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeC
Q 001178 946 TDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDG 993 (1131)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~ 993 (1131)
.+..+.. .......-.+...+++.+-.+..++.+-.+|.+.+-..
T Consensus 897 y~~~eg~---f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 897 YKGDEGN---FEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRK 941 (1096)
T ss_pred EeccCCc---eEEeehhhCccceeeEEEecCceEEeecccccEEEEEe
Confidence 5543311 11122222336778888888888887766676665543
No 324
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.33 E-value=2.1e-06 Score=81.89 Aligned_cols=134 Identities=22% Similarity=0.223 Sum_probs=97.2
Q ss_pred HHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001178 38 MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQ 117 (1131)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1131)
...++++|++|+++.|++.++.....-... ...+.|.|+.|+|+||+..++..+|+.+.|+.+.|......+.++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 567899999999999999998773221111 2238999999999999999999999999999997765434578888888
Q ss_pred hhccccccc--ccccccCCCChhHHHHHHHHHHhhcccCcCccccccCCCCC-hHHHHHHHHHHHHHH
Q 001178 118 LLTLENFRE--NEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLK-TSRLRTLINQSLNWQ 182 (1131)
Q Consensus 118 ll~~~~~~~--~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 182 (1131)
+|..++..+ ...+...- ....|+++.+.+.+.+-... . +| .+.|..++.+....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~------~---~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSY------G---LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHh------C---cCCCCHHHHHHHHHHHHh
Confidence 888876654 22333332 23778899888887654421 2 33 466888877766544
No 325
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.29 E-value=2.2e-06 Score=86.52 Aligned_cols=164 Identities=13% Similarity=0.158 Sum_probs=121.6
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC----cee
Q 001178 459 DLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV----GSR 534 (1131)
Q Consensus 459 ~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~----~~~ 534 (1131)
.++|+-+-.... ++.+.+..|-+-|..+.....|. ..+.|.++.|+... ++++.|+..|.|...|++.. ...
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecccccccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCcc
Confidence 346664433313 66667778888885554555554 56778888886544 69999999999999999876 333
Q ss_pred EEecCCCceEEEEEEcc-CCCEEEEEeecCCCCceEEEEeCCCCee---eEEEecccCCceE-EEEEeCCCCEEEEEEcC
Q 001178 535 VDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESEGAL---KRTYIGFRKKSAG-VVQFDTTRNRILAAGED 609 (1131)
Q Consensus 535 ~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d 609 (1131)
...-.|...|+++..-. ++.+|++.+. +|.|.+||.+.-++ ++.+.+|-+.... -+.+.+....++++++|
T Consensus 292 a~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 292 AQRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred eEEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 34445777888888877 7778877765 99999999987666 8899998663222 24456677889999999
Q ss_pred CcEEEEEcCCCeEEEEEeccC
Q 001178 610 NQIKFWDMDNVNMLTSTEAEG 630 (1131)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~ 630 (1131)
...+||.++.+.++.+++...
T Consensus 368 cytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eEEEEEecccCceeeccCCCC
Confidence 999999999999998887653
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.29 E-value=0.00012 Score=82.86 Aligned_cols=104 Identities=19% Similarity=0.192 Sum_probs=74.5
Q ss_pred ecCCCCEEEEEeCCeEEEEECCC-----ceeEEEEeCCCCCeeEEEEeCCCCcEE-EEEeCCCcEEEEEeeccee-----
Q 001178 841 LSKNDSYVMSAGGGKVSLFNMMN-----FKVMTTFMSPPPASTFLAFHPQDNNII-AIGMEDSTIQIYNVRVDEV----- 909 (1131)
Q Consensus 841 ~s~dg~~la~~~dg~i~vwd~~~-----~~~~~~~~~~~~~i~~l~~s~~~~~~l-a~g~~dg~I~iwd~~~~~~----- 909 (1131)
+.++|++... .+++|.+.|..+ .+.+..+. -......++++| |++++ +++..+.+|.|+|+.+.+.
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457776665 467899999988 34555554 345688899999 55555 5555689999999987542
Q ss_pred -------EEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001178 910 -------KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 910 -------~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~ 948 (1131)
.....--.+ -...+|.++|+...|-..|..|..|++..
T Consensus 361 ~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333332222 24578999999999999999999999987
No 327
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.29 E-value=0.0018 Score=63.46 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=79.7
Q ss_pred EEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 001178 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433 (1131)
Q Consensus 354 ~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i 433 (1131)
..-+|.+.+++.|+..+.+.--|..+|+.+-+ . + -..+|.+-+.- -|++++.|...|.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We-------~----------i---lg~RiE~sa~v-vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE-------A----------I---LGVRIECSAIV-VGDFVVLGCYSGGL 75 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEee-------h----------h---hCceeeeeeEE-ECCEEEEEEccCcE
Confidence 34456667899999999999999999887532 1 1 12233332222 57789999999999
Q ss_pred EEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEec
Q 001178 434 HLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE 494 (1131)
Q Consensus 434 ~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~ 494 (1131)
.+-+.++|+.......+..- . ......+++. ++..|+.|++.+..| .+..++.+.+
T Consensus 76 Yfl~~~tGs~~w~f~~~~~v--k-~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILETV--K-VRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EEEEecchhheeeeeehhhh--c-cceEEcCCCc--eEEEecCCCcEEEecccccceEEecc
Confidence 99999999766543322211 1 2234456777 899999999999999 7777776654
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.2e-05 Score=80.15 Aligned_cols=245 Identities=14% Similarity=0.106 Sum_probs=144.1
Q ss_pred CCCCCeeEEEecCCCC-EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce
Q 001178 831 NAEDVVPCVALSKNDS-YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1131)
Q Consensus 831 ~~~~~i~~l~~s~dg~-~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~ 908 (1131)
.+...|+.++|||..+ ++..++ +.+|+|.|+++..+...+..+ ..+.+++|.-++.++|..|..+|.|.|||+...+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 6788999999999988 566677 899999999999999998877 7899999999888999999999999999998543
Q ss_pred e-EEeecc--cccCeeEEEE------ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcE
Q 001178 909 V-KTKLKG--HQKHITGLAF------STNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 909 ~-~~~~~~--h~~~V~~l~~------s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 979 (1131)
- +..+.+ -..+|..++. .+-|.+|+....+ +..|++.....-... ...-..++...+++..+..+.
T Consensus 270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~---vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPC---VLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred chHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCc---ccccCCCcceeeeeecCccce
Confidence 2 222221 1233443333 3345566666555 567877653321111 111111244555666665555
Q ss_pred EEEEeCC--------eEEEE-eCCCcccceeeecCC-C-C---CCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCcee
Q 001178 980 LLVNHET--------QLAIY-DGSKMECIRQWVPQD-V-L---SSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLR 1044 (1131)
Q Consensus 980 l~~~~d~--------~i~vw-d~~~~~~~~~~~~~~-~-~---~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~ 1044 (1131)
++.+... .+-++ |-.+|..+..-.... + . -..-..+.-.+|..+|+..+ ..+.+.+||..+++..
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv 424 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV 424 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhee
Confidence 5543210 11110 111222221111100 0 0 00111222245666655554 4588999999999988
Q ss_pred eEecCCccccCCCCCCCCccccEEEEEcCC-CCCeEEEEecCCcEEEEecCC
Q 001178 1045 CRIAPSAYMSQASPNSSQTVFPLVVTSHPQ-EPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~-~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
.++... .++. +|+.... .+.+|++-. |..++|++.+.
T Consensus 425 Q~l~~~-----------epv~--Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 425 QTLALS-----------EPVL--DICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred eecccC-----------ccee--ecceeecCCcchhhhee-cceEEEEecCC
Confidence 887643 2233 3333222 445666665 55688887653
No 329
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.27 E-value=0.00024 Score=84.31 Aligned_cols=275 Identities=15% Similarity=0.175 Sum_probs=158.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
..+.|.++.|.-++.. ++.+..+|.|.+-|..+.... +...-...|.+++||||++.++
T Consensus 67 gd~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~e--------------------ivg~vd~GI~aaswS~Dee~l~ 125 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNS-ICVITALGDIILVDPETLELE--------------------IVGNVDNGISAASWSPDEELLA 125 (1265)
T ss_pred CCcceEEEEEecccce-EEEEecCCcEEEEccccccee--------------------eeeeccCceEEEeecCCCcEEE
Confidence 3469999999999875 666778899999988776543 2344567899999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC-----ceeEEec-----
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-----RKLFQFE----- 494 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-----~~~~~~~----- 494 (1131)
..+..+++.+.+-.= ..+.. ..+ ...-.+.++ .+++|..+.=.-+. ..| +.+...+
T Consensus 126 liT~~~tll~mT~~f-~~i~E-~~L--------~~d~~~~sk---~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~ 192 (1265)
T KOG1920|consen 126 LITGRQTLLFMTKDF-EPIAE-KPL--------DADDERKSK---FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI 192 (1265)
T ss_pred EEeCCcEEEEEeccc-cchhc-ccc--------ccccccccc---cceecccccceeeecchhhhcccccccccccccch
Confidence 999888887755321 11110 001 111112222 33333222100111 111 1110000
Q ss_pred CCccCeEEEeecccCCccEEEEE-----ecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceE
Q 001178 495 GHEAPVYSVCPHQKENIHFIFST-----AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~-----s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 569 (1131)
...+.=++++| .+||+++++. ...+.|++||-+ +.....-......-.+++|-|.|..+++.....+ +..|
T Consensus 193 ~~~~~~~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~I 268 (1265)
T KOG1920|consen 193 EQDDHKTSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDI 268 (1265)
T ss_pred hhccCCceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcE
Confidence 01122234666 5778888873 333899999976 2222222222233468999999999998875443 5578
Q ss_pred EEEeCCCCeeeEEEe--cc-cCCceEEEEEeCCCCEEEE---EEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 570 VEWNESEGALKRTYI--GF-RKKSAGVVQFDTTRNRILA---AGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 570 ~iwd~~~~~~~~~~~--~~-~~~~v~~~~~s~~~~~l~~---~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
.++... |-....|. -. ....+..++|+.++..|++ ......|++|-..+-.........-. ...-+.|+|.
T Consensus 269 vffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~--~~~~~~W~p~ 345 (1265)
T KOG1920|consen 269 VFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS--QKALLMWDPV 345 (1265)
T ss_pred EEEecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc--ccccccccCC
Confidence 888743 43222221 11 1213788999999998887 44555699999887654332222111 1222788884
Q ss_pred C-CEEEEEECCCcEEEEec
Q 001178 644 G-NLLVVTTADQGIKILAN 661 (1131)
Q Consensus 644 ~-~~l~~~~~dg~i~iw~~ 661 (1131)
. ..+.+-..+|...++++
T Consensus 346 ~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 346 TEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CceeEEEEecCCcEEEEEE
Confidence 3 34444446777666665
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=2.1e-05 Score=88.83 Aligned_cols=189 Identities=16% Similarity=0.209 Sum_probs=134.4
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001178 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~ 954 (1131)
..++|.+++ +++++-|+.+|.|++++.... . .+...|+.. ..+|.+++||+.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 457777775 478999999999999997633 3 444445543 56799999999999999999888665443
Q ss_pred eeeecCCCCCCCCceEEEEcCC-----CcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEec
Q 001178 955 IAIQLPAGKLPVGETRVQFHSD-----QVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT 1029 (1131)
Q Consensus 955 ~~~~~~~~~~~~~v~~v~~s~d-----~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~ 1029 (1131)
..++ .++.+++++|+ .+.+++|+...+.++.-.-.........+ ...++|.+++|- |.++|-++
T Consensus 109 ~df~-------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~-~~eG~I~~i~W~--g~lIAWan- 177 (846)
T KOG2066|consen 109 YDFK-------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLS-EGEGPIHSIKWR--GNLIAWAN- 177 (846)
T ss_pred EecC-------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeee-cCccceEEEEec--CcEEEEec-
Confidence 3333 68899999998 45566665544888765432222222222 127899999995 77888887
Q ss_pred CCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1030 DGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1030 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
|-.|+|||..+++.+..+......+ ....++-.+.|.+. ..|+.|=.| +|+|..+.
T Consensus 178 d~Gv~vyd~~~~~~l~~i~~p~~~~------R~e~fpphl~W~~~--~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDGVKVYDTPTRQRLTNIPPPSQSV------RPELFPPHLHWQDE--DRLVIGWGD-SVKICSIK 233 (846)
T ss_pred CCCcEEEeccccceeeccCCCCCCC------CcccCCCceEecCC--CeEEEecCC-eEEEEEEe
Confidence 5568999999999999888766333 34466667888773 467666555 59999887
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.24 E-value=0.00024 Score=79.42 Aligned_cols=289 Identities=14% Similarity=0.105 Sum_probs=164.5
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
|...|.--+++..+++ ++.|+..|.+++|+-.+++.... ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 5667777778888885 89999999999999988876642 1234456677788999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeee--e-ecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCc-----eeEEecCCc
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLE--I-DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR-----KLFQFEGHE 497 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~--~-~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~h~ 497 (1131)
.|+..|.|.|+-+..+........ . ..|...|++++|++|+. .+++|...|.|.+-.++.. ..+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999998877433222111 1 23678999999999999 7999999999888764332 122333345
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC-c-eEEEEEEccC----CCEEEEEeecCCCCceEEE
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG-L-WCTTMLYSAD----GSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~-~v~~~~~s~~----g~~l~~~~~~~~~~~~i~i 571 (1131)
+.|..+... ++..|++... .. .+++.+.......-+... + .-...+|-|. ..-.+.|+ ....++
T Consensus 171 s~IVQlD~~---q~~LLVStl~-r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-----RPG~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QSYLLVSTLT-RC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-----RPGLRL 240 (726)
T ss_pred cceEEeecc---cceehHhhhh-hh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-----cCCCce
Confidence 566666532 2233333332 22 223333222111000011 1 1223334332 23334443 334566
Q ss_pred EeCC-CCeeeEEEecc-------------cC----------CceEEEE----EeCCCCEEEEEEcCCcEEEEEcCCCeEE
Q 001178 572 WNES-EGALKRTYIGF-------------RK----------KSAGVVQ----FDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1131)
Q Consensus 572 wd~~-~~~~~~~~~~~-------------~~----------~~v~~~~----~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1131)
|... .|..+++..-. .. ..-..+. +.-.+.++++-++-| |+|+|..+...+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 6543 24444332100 00 0000010 111223455555545 889998776554
Q ss_pred EEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhh
Q 001178 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAI 671 (1131)
Q Consensus 624 ~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 671 (1131)
.-... .+ .|..++. .++-|++-..|+.+++..+.+..+.+..+
T Consensus 320 l~se~-~~--DI~dVs~--~~neiFvL~~d~~l~~~sv~s~qr~l~~l 362 (726)
T KOG3621|consen 320 LWSEG-GH--DILDVSH--CGNEIFVLNLDRGLKVESVASRQRKLESL 362 (726)
T ss_pred EeecC-CC--ceeEEee--cCceEEEEecCCceeEEEeehhHHHHHHH
Confidence 33322 22 4555554 46677777888888888887775554443
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=9e-05 Score=84.45 Aligned_cols=206 Identities=13% Similarity=0.173 Sum_probs=132.5
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccC-eeEEEEccCCCEEEEEeCCCc-----EEEEEcCCCceee-
Q 001178 881 AFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKH-ITGLAFSTNLNILVSSGSDAQ-----LIFWNTDTWEKRK- 953 (1131)
Q Consensus 881 ~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~s~dg~~l~s~~~Dg~-----v~lwd~~~~~~~~- 953 (1131)
+|++ ++..+|.|+.+|.|.+++ .+-+.+..++++... |..+....+..+|++.+.|+. |++|+++.-+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 778899999999998887 344556778888777 555555555578999988765 8999998753222
Q ss_pred eee------eecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCc--ccceeeecCCCCCCCeEEEEEccCCCEE
Q 001178 954 SIA------IQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKM--ECIRQWVPQDVLSSPISSAAYSCNSQLI 1024 (1131)
Q Consensus 954 ~~~------~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~--~~~~~~~~~~~~~~~v~~i~~s~dg~~l 1024 (1131)
..+ ........+.+++.++.+.+-+.+++|- +|.|..+.-+-. +-.+.-.. +....+|+.++|-.|++.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS-HRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee-ccCCCCceeeEEecCCcee
Confidence 111 1112233457899999999999999984 788888864321 11111111 2227899999999999974
Q ss_pred EEEecCCcEEEEECCCCce-eeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCccccccc
Q 001178 1025 YATFTDGSIGVFDADSLRL-RCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVA 1103 (1131)
Q Consensus 1025 ~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w~~~ 1103 (1131)
+.+..-..|.+|.+..... .+.+. +++.+.+ +..|++..+ .+++++.. .|.+|+....+.-|...
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld----------~~G~~ln--Css~~~~t~-qfIca~~e-~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLD----------NNGISLN--CSSFSDGTY-QFICAGSE-FLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeec----------cCCccce--eeecCCCCc-cEEEecCc-eEEEEcCCCcceeeeec
Confidence 4444567899999873331 22222 1333333 566666433 35555544 48888887665555443
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.21 E-value=0.00087 Score=74.85 Aligned_cols=254 Identities=16% Similarity=0.174 Sum_probs=132.1
Q ss_pred ecCCCcEEEEE--------cCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 356 HPFHHTLLVVG--------CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 356 spdg~~llasg--------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
|||++++|+.- +..+.+.|||+.+++.... ......+....|||||+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l--------------------~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL--------------------TPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES--------------------S-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC--------------------cCCccccccceeecCCCeeEEE
Confidence 68888755521 2235789999998765431 1115678889999999999988
Q ss_pred eCCCeEEEEEecCCCccceeeeeec-------C---------cCCeeEEEEecCCCceEEEEE-cCCCcEEEEeCCCcee
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDA-------H---------VGGVNDLAFSYPNKQLCIVTC-GDDKLIRVWDLSGRKL 490 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~-------h---------~~~V~~l~~s~d~~~~~l~s~-s~d~~i~iwd~~~~~~ 490 (1131)
. ++.|.+++..++...+. +..| - -+.-..+.|||||++ |+.. -++..|+.+. +
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~-----~ 130 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYP-----L 130 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEE-----E
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEE-----e
Confidence 5 57899999877643321 2222 0 112357889999995 4433 2334444333 0
Q ss_pred EEecCCcc---CeEEEeecccCCccEEEEEecCC--eEEEEeCCCCceeE-Ee----cCCCceEEEEEEccCCCEEEEEe
Q 001178 491 FQFEGHEA---PVYSVCPHQKENIHFIFSTAVDG--KIKAWLYDNVGSRV-DY----DAPGLWCTTMLYSADGSRLFSCG 560 (1131)
Q Consensus 491 ~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~dg--~i~~wd~~~~~~~~-~~----~~~~~~v~~~~~s~~g~~l~~~~ 560 (1131)
........ .+..+.+ |.+ |..+- .+.++|+.+++... .. ......+..+.|.++++.++..-
T Consensus 131 ~~~~~~~~~yp~~~~~~Y-Pk~-------G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~ 202 (353)
T PF00930_consen 131 PDYSPPDSQYPEVESIRY-PKA-------GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQW 202 (353)
T ss_dssp EEESSSTESS-EEEEEE---BT-------TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEE
T ss_pred eccCCccccCCccccccc-CCC-------CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEE
Confidence 01111111 1222222 111 11112 35567777665432 21 23455789999999999555444
Q ss_pred ecC-CCCceEEEEeCCCCeeeEEEecccCCce---EEEEEe-CCCCEE-EEEEcCCc--EEEEEcCCCeEEEEEeccCCC
Q 001178 561 TSK-EGDSHLVEWNESEGALKRTYIGFRKKSA---GVVQFD-TTRNRI-LAAGEDNQ--IKFWDMDNVNMLTSTEAEGGL 632 (1131)
Q Consensus 561 ~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~v---~~~~~s-~~~~~l-~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~ 632 (1131)
.++ .....+.+.|..++.....+.......+ ....+. +++..+ .....+|- |++++...+... .+.. +.
T Consensus 203 ~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~--G~ 279 (353)
T PF00930_consen 203 LNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTS--GD 279 (353)
T ss_dssp EETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS---SS
T ss_pred cccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-cccc--Cc
Confidence 333 3345677888887766544443333332 234554 666544 44446665 555566655533 2221 11
Q ss_pred CCcc-eEEEcCCCCEEEEE
Q 001178 633 PSLP-RLRFNKEGNLLVVT 650 (1131)
Q Consensus 633 ~~i~-~v~~sp~~~~l~~~ 650 (1131)
-.|. .+.++++++.++..
T Consensus 280 ~~V~~i~~~d~~~~~iyf~ 298 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFT 298 (353)
T ss_dssp S-EEEEEEEECTSSEEEEE
T ss_pred eeecccceEcCCCCEEEEE
Confidence 2453 35667766655433
No 334
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.20 E-value=0.00038 Score=77.69 Aligned_cols=298 Identities=13% Similarity=0.121 Sum_probs=160.7
Q ss_pred eCCCCEEEEEE---------cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchh
Q 001178 597 DTTRNRILAAG---------EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRA 667 (1131)
Q Consensus 597 s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1131)
|||+++++... ..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 46777666532 346799999999776554433 23688999999999998875 578999887665211
Q ss_pred hhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeee
Q 001178 668 LRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELT 747 (1131)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~ 747 (1131)
.-+..+ ... +..|- --|-..
T Consensus 77 ~lT~dg-~~~------------------------------------------------------i~nG~-----~dwvye 96 (353)
T PF00930_consen 77 QLTTDG-EPG------------------------------------------------------IYNGV-----PDWVYE 96 (353)
T ss_dssp ESES---TTT------------------------------------------------------EEESB-------HHHH
T ss_pred Eecccc-cee------------------------------------------------------EEcCc-----cceecc
Confidence 111111 000 00000 001000
Q ss_pred cccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeec-ceeeEEeecCCCC-------------CCCCccceeeec
Q 001178 748 EIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSN-GVQKLWKWNRTEQ-------------NPSGKATAAVAP 813 (1131)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~iw~~~~~~~-------------~~~~~~~~~~~~ 813 (1131)
+. --..-..+-|||||++|+...-| ..+..+.+..-.. ..-|.......+
T Consensus 97 EE----------------v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l 160 (353)
T PF00930_consen 97 EE----------------VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSL 160 (353)
T ss_dssp HH----------------TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEE
T ss_pred cc----------------ccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEE
Confidence 00 01112357788888888877654 4444443322111 112333355567
Q ss_pred eeecCCCCcccccCCC---CCCCCCeeEEEecCCCCEEEEE-e--C-C--eEEEEECCCceeEEEEeC-CCC---CeeEE
Q 001178 814 QHWQPSNGLLMTNDVP---ENAEDVVPCVALSKNDSYVMSA-G--G-G--KVSLFNMMNFKVMTTFMS-PPP---ASTFL 880 (1131)
Q Consensus 814 ~~w~~~~~~~~~~~~~---~~~~~~i~~l~~s~dg~~la~~-~--d-g--~i~vwd~~~~~~~~~~~~-~~~---~i~~l 880 (1131)
.++++.+++......+ ......+..+.|+++++.|+.. . + . .+.++|..++.+...... ... .-...
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~ 240 (353)
T PF00930_consen 161 FVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPP 240 (353)
T ss_dssp EEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEE
T ss_pred EEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccc
Confidence 7888888876544443 2346678899999999944443 2 2 2 377778877655443331 122 23356
Q ss_pred EEe-CCCCcEEEEEeCCCcEEEEEee--cceeEEeecccccCeeE-EEEccCCCEEE-EEeCC----CcEEEEEcC-CCc
Q 001178 881 AFH-PQDNNIIAIGMEDSTIQIYNVR--VDEVKTKLKGHQKHITG-LAFSTNLNILV-SSGSD----AQLIFWNTD-TWE 950 (1131)
Q Consensus 881 ~~s-~~~~~~la~g~~dg~I~iwd~~--~~~~~~~~~~h~~~V~~-l~~s~dg~~l~-s~~~D----g~v~lwd~~-~~~ 950 (1131)
.|. ++++.+|.....+|.-+||-++ .+. ...+....-.|+. +.++++++.|. ++..+ ..|..-+++ .++
T Consensus 241 ~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~ 319 (353)
T PF00930_consen 241 HFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE 319 (353)
T ss_dssp EE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE
T ss_pred ccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC
Confidence 665 6577777777788876666554 444 3455555566755 77888877654 45442 245555555 322
Q ss_pred eeeeeeeecCCCCCCCCc-eEEEEcCCCcEEEEE
Q 001178 951 KRKSIAIQLPAGKLPVGE-TRVQFHSDQVRLLVN 983 (1131)
Q Consensus 951 ~~~~~~~~~~~~~~~~~v-~~v~~s~d~~~l~~~ 983 (1131)
. .++... ... ..+.|||++++++..
T Consensus 320 ~---~~LT~~-----~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 320 P---KCLTCE-----DGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp E---EESSTT-----SSTTEEEEE-TTSSEEEEE
T ss_pred e---EeccCC-----CCCceEEEECCCCCEEEEE
Confidence 2 111111 122 689999999998863
No 335
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.13 E-value=9.4e-06 Score=56.90 Aligned_cols=39 Identities=31% Similarity=0.528 Sum_probs=36.8
Q ss_pred ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001178 864 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1131)
Q Consensus 864 ~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd 903 (1131)
++++.++.+|...|.+++|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 468899999999999999999 899999999999999997
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00031 Score=80.23 Aligned_cols=203 Identities=17% Similarity=0.182 Sum_probs=136.6
Q ss_pred EEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCC-eeEEEEeCCCCcEEEEEeCCC-----cEEEEEeecc----
Q 001178 839 VALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVD---- 907 (1131)
Q Consensus 839 l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~~la~g~~dg-----~I~iwd~~~~---- 907 (1131)
-++++.+..++.|+ +|.|.+++- +.+.++.+..+... |+.+.... +..+|++-+.|+ .++||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678888899998 898888774 23445667766666 44444443 446777766665 4899998742
Q ss_pred --eeE--Eeecc-----cccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCc
Q 001178 908 --EVK--TKLKG-----HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 908 --~~~--~~~~~-----h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 978 (1131)
.++ ..+.. ...++++++.|.+-+.+|.|-.||.|..+.-+--+.+.....-.. ....+|+.+++..|+.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~--~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSH--RGKEPITGLALRSDGK 184 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeec--cCCCCceeeEEecCCc
Confidence 233 12222 356789999999999999999999999986544332222222222 2237999999999998
Q ss_pred E-EEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEec
Q 001178 979 R-LLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 979 ~-l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
. +.+.+...|.+|.+.... ........+...+.|..|++...-+++++ +..+.+|+.+......++.
T Consensus 185 s~lFv~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eeEEEEecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 7 666778899999998433 22222334478899999987655355554 5789999988665555554
No 337
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.05 E-value=0.0094 Score=64.15 Aligned_cols=280 Identities=13% Similarity=0.077 Sum_probs=134.9
Q ss_pred EEecCCCcEEEEEcCCC--eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCC
Q 001178 354 DFHPFHHTLLVVGCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1131)
Q Consensus 354 ~fspdg~~llasg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~ 431 (1131)
+|.+||++||..+..|| .+.+.|+.+++...- ..+.........++|+++.++......
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QL-------------------Tdg~g~~~~g~~~s~~~~~~~Yv~~~~ 102 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQL-------------------TDGPGDNTFGGFLSPDDRALYYVKNGR 102 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----------------------SS-B-TTT-EE-TTSSEEEEEETTT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEEC-------------------ccCCCCCccceEEecCCCeEEEEECCC
Confidence 67899998888887776 467778888876531 111112222466789999887776677
Q ss_pred eEEEEEecCCCccceeeeeecCcCCeeEEEEe--cCCCceEEEEEc---CC-------------------CcEEEEeCCC
Q 001178 432 LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS--YPNKQLCIVTCG---DD-------------------KLIRVWDLSG 487 (1131)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s--~d~~~~~l~s~s---~d-------------------~~i~iwd~~~ 487 (1131)
.|+--|+++.+.. .+ +......+-...|. .|+. .++..- .| +.|.--|+..
T Consensus 103 ~l~~vdL~T~e~~-~v--y~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t 177 (386)
T PF14583_consen 103 SLRRVDLDTLEER-VV--YEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT 177 (386)
T ss_dssp EEEEEETTT--EE-EE--EE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred eEEEEECCcCcEE-EE--EECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence 8999999886632 33 33344455445664 3455 333221 11 1122223222
Q ss_pred ceeEEecCCccCeEEEeecccCCccEEEEEe---cCC-eEEEEeCCCCceeE-Eec--CCCceEEEEEEccCCCEEEEEe
Q 001178 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTA---VDG-KIKAWLYDNVGSRV-DYD--APGLWCTTMLYSADGSRLFSCG 560 (1131)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg-~i~~wd~~~~~~~~-~~~--~~~~~v~~~~~s~~g~~l~~~~ 560 (1131)
.....+..-...+.-+.|+|... ..|+-|- .|. .-|+|-+++..... .+. .....+..=-|.|||..+...+
T Consensus 178 G~~~~v~~~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~ 256 (386)
T PF14583_consen 178 GERKVVFEDTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDS 256 (386)
T ss_dssp --EEEEEEESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEE
T ss_pred CceeEEEecCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEe
Confidence 23333333444556667766543 3343332 122 13667555433222 111 2334677778999999988765
Q ss_pred e-cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC----------------CcEEEEEcCCCeEE
Q 001178 561 T-SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED----------------NQIKFWDMDNVNML 623 (1131)
Q Consensus 561 ~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------------g~i~iwd~~~~~~~ 623 (1131)
. .+..+..|.-+|..+++....... . ...-...++||.+++-=+.| --|+++++..+...
T Consensus 257 ~~~~~~~~~i~~~d~~t~~~~~~~~~--p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~ 333 (386)
T PF14583_consen 257 YTPGGQDFWIAGYDPDTGERRRLMEM--P-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR 333 (386)
T ss_dssp EETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred ecCCCCceEEEeeCCCCCCceEEEeC--C-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence 4 223356788889888865443322 1 23335567888877653332 25677888877654
Q ss_pred EEEecc--------CCCCCcceEEEcCCCCEEEEEEC-CCcEEEEec
Q 001178 624 TSTEAE--------GGLPSLPRLRFNKEGNLLVVTTA-DQGIKILAN 661 (1131)
Q Consensus 624 ~~~~~~--------~~~~~i~~v~~sp~~~~l~~~~~-dg~i~iw~~ 661 (1131)
...... .....-....|+|||+.++..+. .|...||-+
T Consensus 334 ~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 334 KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 322211 01112357899999998876554 677766654
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.03 E-value=0.0023 Score=74.65 Aligned_cols=242 Identities=12% Similarity=0.136 Sum_probs=141.1
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEEeCCCCC-----e-eEEEEeCCCCcEEEEEe---------CCCcEEEEEeeccee
Q 001178 846 SYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPA-----S-TFLAFHPQDNNIIAIGM---------EDSTIQIYNVRVDEV 909 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~-----i-~~l~~s~~~~~~la~g~---------~dg~I~iwd~~~~~~ 909 (1131)
..++.++ ++.|.-+|.++++.+-++...... + ....+. ++ ++++++ .+|.+.-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCce
Confidence 4455554 899999999999999887643321 1 122232 23 444554 367889999999987
Q ss_pred EEeeccccc--------------------Ce-eEEEEccCCCEEEEEeCCC------------------cEEEEEcCCCc
Q 001178 910 KTKLKGHQK--------------------HI-TGLAFSTNLNILVSSGSDA------------------QLIFWNTDTWE 950 (1131)
Q Consensus 910 ~~~~~~h~~--------------------~V-~~l~~s~dg~~l~s~~~Dg------------------~v~lwd~~~~~ 950 (1131)
+-....... .| ...++.+.+..++.++.|+ .|.-.|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 766543211 11 1345555566777776665 69999999988
Q ss_pred eeeeeeeecCCCCCCCCceEEEE----cCCCc---EEEEE-eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCC
Q 001178 951 KRKSIAIQLPAGKLPVGETRVQF----HSDQV---RLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ 1022 (1131)
Q Consensus 951 ~~~~~~~~~~~~~~~~~v~~v~~----s~d~~---~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~ 1022 (1131)
..-...................+ .-++. .++++ .+|.++..|..+|+.+-..... ...++.+| .
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~--~ 339 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP--G 339 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC--c
Confidence 76654322110000000000111 12333 34444 5899999999999987765321 11223333 3
Q ss_pred EEEEE------------------ecCCcEEEEECCCCceeeEecCCccccCCCCCCCCcc--ccEEEEEcCCCCCeEEEE
Q 001178 1023 LIYAT------------------FTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTV--FPLVVTSHPQEPNQLAVG 1082 (1131)
Q Consensus 1023 ~l~s~------------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~~~p~~~~~l~s~ 1082 (1131)
.++.+ ..+|.+.-.|+.+|+.+-+.......... ...... .++.+ .+.+|+.+
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~--~~g~~~~~~~~~~-----~g~~v~~g 412 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSW--NIGFPHWGGSLAT-----AGNLVFAG 412 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccccc--ccCCcccCcceEe-----cCCeEEEE
Confidence 33332 23578888999999888777643111000 000000 01112 34688899
Q ss_pred ecCCcEEEEecCCCccccccccC
Q 001178 1083 LTDGSVKVIEPSETERKWGVAVP 1105 (1131)
Q Consensus 1083 ~~Dg~v~iW~~~~~~~~w~~~~p 1105 (1131)
+.||.|+.+|..+++..|....+
T Consensus 413 ~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 413 AADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred CCCCeEEEEECCCCceeeEEECC
Confidence 99999999999999999998753
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.02 E-value=0.0031 Score=73.67 Aligned_cols=110 Identities=12% Similarity=0.077 Sum_probs=69.1
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCc------eEE--EEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL------WCT--TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~------~v~--~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
..++.++.++.+.-.|..+++.+..+..... .+. .+.+. ++..++.++. ++.|+-+|.++|+.+-.+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 4577777889999999888887776544322 000 11111 2255666554 889999999999998777
Q ss_pred ecccCC----ceE-EEEEeCCCCEEEEEE---------cCCcEEEEEcCCCeEEEEEec
Q 001178 584 IGFRKK----SAG-VVQFDTTRNRILAAG---------EDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 584 ~~~~~~----~v~-~~~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
...... .+. ...+. +..++.++ .+|.++.+|..+|+.+.....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 643220 011 12222 24555554 368899999999998877654
No 340
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.00062 Score=76.32 Aligned_cols=284 Identities=15% Similarity=0.104 Sum_probs=157.3
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
+...+.=-+++..+++++.|++.|.+.+|+-..+ ++..... ++....+....+|++.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~----------------------~~~~~~~-~~~~~~~~~~~vs~~e 88 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG----------------------EMRKLKN-EGATGITCVRSVSSVE 88 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCch----------------------hhhcccc-cCccceEEEEEecchh
Confidence 4455555677788999999999999998874432 2211111 1234556667888998
Q ss_pred CEEEEEe-CCeEEEEECCCceeE-----EEE-eCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc----eeEEeec
Q 001178 846 SYVMSAG-GGKVSLFNMMNFKVM-----TTF-MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD----EVKTKLK 914 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~~~~~~~-----~~~-~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~----~~~~~~~ 914 (1131)
.++|.|+ .|.|.++-+...... ... +.|...|++++|++ ++..+.+|...|.|.+-.+++. .....+-
T Consensus 89 ~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il 167 (726)
T KOG3621|consen 89 YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEIL 167 (726)
T ss_pred HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceee
Confidence 8888888 688999887653221 111 13678899999999 9999999999999999888772 1112233
Q ss_pred ccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCC-CceEEEEcCC----CcEEEEEeCCeEE
Q 001178 915 GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPV-GETRVQFHSD----QVRLLVNHETQLA 989 (1131)
Q Consensus 915 ~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~-~v~~v~~s~d----~~~l~~~~d~~i~ 989 (1131)
.-.+.|..+... ++..|++...- ..+.+.+.... .++......+ .-...+|-|. ..-.+.+..-..|
T Consensus 168 ~~ds~IVQlD~~-q~~LLVStl~r--~~Lc~tE~eti-----~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~R 239 (726)
T KOG3621|consen 168 SEDSEIVQLDYL-QSYLLVSTLTR--CILCQTEAETI-----TQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLR 239 (726)
T ss_pred ccCcceEEeecc-cceehHhhhhh--hheeecchhHH-----HHhcCCCcCCccccceEEeeccccCCCceEEEecCCCc
Confidence 345667777765 33444443332 23444443221 1111111101 1223344333 2233334444567
Q ss_pred EEeCC-Ccccceeeec-------------CCC-------------CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 001178 990 IYDGS-KMECIRQWVP-------------QDV-------------LSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR 1042 (1131)
Q Consensus 990 vwd~~-~~~~~~~~~~-------------~~~-------------~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1042 (1131)
+|..+ .|..+++..- +.. +.-....+.+-.++ .+++-++- .|+|+|..+..
T Consensus 240 lWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~-Giyv~d~~~~~ 317 (726)
T KOG3621|consen 240 LWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEV-GIYVFDSNNSQ 317 (726)
T ss_pred eEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecc-eEEEEEeccce
Confidence 77665 2433333211 000 00011112222233 34444433 49999998877
Q ss_pred eeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCccc
Q 001178 1043 LRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERK 1099 (1131)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~ 1099 (1131)
.....+..+ .|. +|+ ..++-|+.-..|+.+++..+.+.+.+
T Consensus 318 v~l~se~~~-----------DI~--dVs---~~~neiFvL~~d~~l~~~sv~s~qr~ 358 (726)
T KOG3621|consen 318 VYLWSEGGH-----------DIL--DVS---HCGNEIFVLNLDRGLKVESVASRQRK 358 (726)
T ss_pred EEEeecCCC-----------cee--EEe---ecCceEEEEecCCceeEEEeehhHHH
Confidence 776654322 122 233 24566777777888888887665443
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.01 E-value=0.00044 Score=77.85 Aligned_cols=223 Identities=12% Similarity=0.143 Sum_probs=119.7
Q ss_pred ccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCC
Q 001178 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1131)
......+.++|+|+.+++ +.+|...++.... ......+.....+|.++++
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~-----------------------------~r~k~~G~g~~~vw~~~n~ 81 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA-----------------------------WRNKAFGSGLSFVWSSRNR 81 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTT-----------------------------TEEEEEEE-SEEEE-TSSE
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccC-----------------------------CcccccCceeEEEEecCcc
Confidence 344678999999998888 6677777775111 0001234445788998766
Q ss_pred EEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEc
Q 001178 847 YVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFS 926 (1131)
Q Consensus 847 ~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 926 (1131)
+.+.-..++|.|+.--+.+....+..+ ..+..+- .|.+|...+.+ .|.+||+.+++.+..+... +|..+.||
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC-cccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 555545788999733233332333322 1233333 26677766554 8999999999999988744 38999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCC------c---eeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcc
Q 001178 927 TNLNILVSSGSDAQLIFWNTDTW------E---KRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKME 997 (1131)
Q Consensus 927 ~dg~~l~s~~~Dg~v~lwd~~~~------~---~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~ 997 (1131)
++|.+++-.+.+ .+.+++.+.. + ......... ....|.+.+|..| -++.+... +++-+--....
T Consensus 154 ~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E----~~~~IkSg~W~~d-~fiYtT~~-~lkYl~~Ge~~ 226 (443)
T PF04053_consen 154 DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE----ISERIKSGCWVED-CFIYTTSN-HLKYLVNGETG 226 (443)
T ss_dssp TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE----E-S--SEEEEETT-EEEEE-TT-EEEEEETTEEE
T ss_pred CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE----ecceeEEEEEEcC-EEEEEcCC-eEEEEEcCCcc
Confidence 999999999877 5777776543 0 000011110 0167888999888 44444444 66663322222
Q ss_pred cceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 001178 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 998 ~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
.+..+ ..+++=+.+.+..+.+.....|+.|..+.++.
T Consensus 227 ~i~~l------d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 227 IIAHL------DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEE-------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred eEEEc------CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 33332 45788888888888899999999999988764
No 342
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.99 E-value=5.7e-06 Score=64.15 Aligned_cols=53 Identities=38% Similarity=0.537 Sum_probs=42.8
Q ss_pred cHHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHHHHHHHHHHHHhcCCH
Q 001178 37 NMKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDR 90 (1131)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~Ell~~~~~ 90 (1131)
++..++++|++|+|++|++.++..........+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 367899999999999999999888443322223 49999999999999998764
No 343
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.99 E-value=0.0034 Score=67.41 Aligned_cols=293 Identities=14% Similarity=0.075 Sum_probs=140.1
Q ss_pred eEEEEeecCCceEEEeee-cceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEE
Q 001178 770 VARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV 848 (1131)
Q Consensus 770 i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 848 (1131)
...=+|.++|+.|+..++ +|.-.+|-+ |+.+++... +..+.........++++.+.+
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~Q--LTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQ--LTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE-----SS-B-TTT-EE-TTSSEE
T ss_pred ecCCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEE--CccCCCCCccceEEecCCCeE
Confidence 334568899988888776 666555544 334444332 111122222346677888888
Q ss_pred EEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeC-CCCcEEEEEeC----------------------CCcEEEEEe
Q 001178 849 MSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHP-QDNNIIAIGME----------------------DSTIQIYNV 904 (1131)
Q Consensus 849 a~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~~la~g~~----------------------dg~I~iwd~ 904 (1131)
+-.. +..|+-.|+.+.+....+..+...+....|.. .|+..++-.-. ...|.-.|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 7654 67899999999887777776666665555542 24555442211 112455566
Q ss_pred ecceeEEeecccccCeeEEEEccCCCEEEEEeC----CCc-EEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcE
Q 001178 905 RVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS----DAQ-LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 905 ~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~----Dg~-v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 979 (1131)
.+|+....+. -...+..+.|||....++.-+. |.. -+||-+.+........ ........+..=-|.|||..
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v---~~~~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV---HRRMEGESVGHEFWVPDGST 251 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES---S---TTEEEEEEEE-TTSS-
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee---ecCCCCcccccccccCCCCE
Confidence 6776544444 3455778999997655555433 332 3677665532211111 11112245666689999998
Q ss_pred EEE-E-----eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC----------------cEEEEE
Q 001178 980 LLV-N-----HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG----------------SIGVFD 1037 (1131)
Q Consensus 980 l~~-~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg----------------~i~vwd 1037 (1131)
+.. + .+..|.-+++.+++....... ..-..+-.++||++++-=+.|. -|++++
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~ 326 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFD 326 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEE
T ss_pred EEEEeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEec
Confidence 775 2 244577788888765432222 1344566688998776544432 466788
Q ss_pred CCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1038 ADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
+..++..... .|...... ..+...+..-...|+|++...|.+....|...||-+.-
T Consensus 327 ~~~~~~~~l~-~h~~sw~v-~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 327 VEAGRFRKLA-RHDTSWKV-LDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp TTTTEEEEEE-E--------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred cccCceeeee-eccCccee-ecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence 8776643222 22110000 00112223345899997666777777788877775543
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.99 E-value=0.0022 Score=71.26 Aligned_cols=251 Identities=16% Similarity=0.222 Sum_probs=133.2
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccc------c------------ccceeecccccc------cceecee
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLV------S------------KPFKIWDMSNCS------MMLQAAI 404 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~------~------------~~~~~~~~~~~~------~~~~~~~ 404 (1131)
.|+.+.|+++... ||+|...|.|.||.+...+... . .+-++-|+.... ...+...
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999775 8899999999999986654332 0 011223333211 1223335
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeec------CcCCeeEEEEec-----CC-CceEEE
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDA------HVGGVNDLAFSY-----PN-KQLCIV 472 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~------h~~~V~~l~~s~-----d~-~~~~l~ 472 (1131)
+....++|++++.| |=-++|.|+.+|.+.|.|+++...+.. ..+.. ....|+++.|+- |+ ...+++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66678999999998 555999999999999999987664432 12222 234688898873 22 124788
Q ss_pred EEcCCCcEEEEe-C-C--CceeEE----ecCCccCeEEEeecccCC-------------------ccEEEEEecCCeEEE
Q 001178 473 TCGDDKLIRVWD-L-S--GRKLFQ----FEGHEAPVYSVCPHQKEN-------------------IHFIFSTAVDGKIKA 525 (1131)
Q Consensus 473 s~s~d~~i~iwd-~-~--~~~~~~----~~~h~~~v~~~~~~~~~~-------------------~~~l~s~s~dg~i~~ 525 (1131)
.|...|.+.+|. . . +..... ...+.++|..+....... -+-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 888899999997 2 1 222211 224566766665321111 122444555788999
Q ss_pred EeCCCCceeEEecCCCceEEEEEEc-----cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccC---CceEEEEEe
Q 001178 526 WLYDNVGSRVDYDAPGLWCTTMLYS-----ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK---KSAGVVQFD 597 (1131)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~s 597 (1131)
+...+.+...+.......+..+.+- ..+..|++... +|.++++.+..-+.+..+.-... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888776655544333344445553 24555665554 89999999998888777664321 122335566
Q ss_pred CCCCEEEEE
Q 001178 598 TTRNRILAA 606 (1131)
Q Consensus 598 ~~~~~l~~~ 606 (1131)
++|..++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 666644443
No 345
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.00058 Score=77.60 Aligned_cols=178 Identities=12% Similarity=0.139 Sum_probs=123.2
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEE
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVS 857 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~ 857 (1131)
++.++.|..+|.+.+++.+... ...+ .|... ..+|+++++++ ||+|.
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~------------------------~~~~--~~s~~------~~~Gey~asCS~DGkv~ 96 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP------------------------KTNF--DHSSS------ILEGEYVASCSDDGKVV 96 (846)
T ss_pred cceeeeccccceEEEEecCCcc------------------------cccc--ccccc------ccCCceEEEecCCCcEE
Confidence 6678888889999888754311 0000 12211 66899999999 89999
Q ss_pred EEECCCceeEEEEeCCCCCeeEEEEeCC----CCcEEEEEeCCCcEEEEEee--cceeEEeecccccCeeEEEEccCCCE
Q 001178 858 LFNMMNFKVMTTFMSPPPASTFLAFHPQ----DNNIIAIGMEDSTIQIYNVR--VDEVKTKLKGHQKHITGLAFSTNLNI 931 (1131)
Q Consensus 858 vwd~~~~~~~~~~~~~~~~i~~l~~s~~----~~~~la~g~~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~s~dg~~ 931 (1131)
|..+.+.+...++. ...++.+++++|+ ..+.+++|+..| +.++.-. ..+.-..+..-.|+|.++.|. |++
T Consensus 97 I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~l 172 (846)
T KOG2066|consen 97 IGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNL 172 (846)
T ss_pred EeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcE
Confidence 99988877776654 3467999999993 256788899888 7777533 112122456667899999996 889
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCC
Q 001178 932 LVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGS 994 (1131)
Q Consensus 932 l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~ 994 (1131)
+|=++.+| |++||+.+.+.................-..+.|.++.+ |+.|=..+|+|..++
T Consensus 173 IAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 173 IAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 99998888 89999999776655544333333334456778887765 555655677777766
No 346
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.94 E-value=0.00016 Score=82.82 Aligned_cols=182 Identities=8% Similarity=0.090 Sum_probs=129.5
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
++..++.|+....+..+|+.+.+..+. ..--.+.|+-++. +++ .+.+|...|+|.+-| .+.+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT---TNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee---eeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 456777788888899999988764431 2212223544443 466 799999999999999 88999999999999
Q ss_pred CeEEEeecccCCccEEEEEec---------CCeEEEEeCCCCceeEEecCCCceEEEEEEccC-CCEEEEEeecCCCCce
Q 001178 499 PVYSVCPHQKENIHFIFSTAV---------DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD-GSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~---------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~~~~~~ 568 (1131)
.|..+.. .|+.|++++. |..|++||++....+..+..+.++ .-+.|.|. ...+++++. .|.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq 289 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ 289 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec----ccc
Confidence 9998865 4478888874 567899999988777655554443 44566664 345556654 677
Q ss_pred EEEEe---CCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEc
Q 001178 569 LVEWN---ESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 569 i~iwd---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1131)
..+-| +.+...-..+....+..+...+++++++.++.|..+|.|.+|.-
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 88877 33322211222223334888999999999999999999999973
No 347
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.90 E-value=1.7e-05 Score=49.09 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHhc
Q 001178 6 RELVFLILQFLDEEKFKESVHRLEQES 32 (1131)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es 32 (1131)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999997
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.87 E-value=0.004 Score=69.20 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=80.8
Q ss_pred CCCeeEEEecC-CCCEEEEEe-----CCe----EEEEECCCceeEEE--E-eCCCCCeeEEEEeCCCCcEEEEEeCCCcE
Q 001178 833 EDVVPCVALSK-NDSYVMSAG-----GGK----VSLFNMMNFKVMTT--F-MSPPPASTFLAFHPQDNNIIAIGMEDSTI 899 (1131)
Q Consensus 833 ~~~i~~l~~s~-dg~~la~~~-----dg~----i~vwd~~~~~~~~~--~-~~~~~~i~~l~~s~~~~~~la~g~~dg~I 899 (1131)
+....++.||. +...+.+.. +|. -.+|++...+..+. . -.....+.+++++| +...++.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 33446777776 333343331 333 56777765543322 1 13567899999999 88889999999999
Q ss_pred EEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001178 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTW 949 (1131)
Q Consensus 900 ~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~ 949 (1131)
.+||...+... +..+.-..+.++|+|+|..+++|+.-|.+.+||+.-.
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99998766332 2234456788999999999999999999999998763
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.87 E-value=0.0022 Score=72.22 Aligned_cols=221 Identities=17% Similarity=0.194 Sum_probs=120.0
Q ss_pred CCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe
Q 001178 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~ 912 (1131)
...+..+.++|+|++++++++|...|+.....+....- .-..++|++ .++ +|+-..+++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G-----~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFG-----SGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEE-----E-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccC-----ceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 34467899999999999999999999996555554432 345688988 555 66676788999973222222222
Q ss_pred ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEe
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYD 992 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd 992 (1131)
++.. ..+..+-. |..|...+.+ .|.+||+++++....... .++..+.|+++|.+++..++..+.|++
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--------~~vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--------SAVKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---------E-EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--------CCCcEEEEECCCCEEEEEeCCeEEEEE
Confidence 3211 12333433 8888877666 799999999775544332 347899999999999998888999987
Q ss_pred CCCc-----------ccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc--eeeEecCCccccCCCCC
Q 001178 993 GSKM-----------ECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR--LRCRIAPSAYMSQASPN 1059 (1131)
Q Consensus 993 ~~~~-----------~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~ 1059 (1131)
.... .....+... ...|.+.+|..| -++.+ +.. .++. +-.|+ .++.+.
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d-~fiYt-T~~-~lkY--l~~Ge~~~i~~ld----------- 232 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED-CFIYT-TSN-HLKY--LVNGETGIIAHLD----------- 232 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S-----------
T ss_pred ecchhcccccccCchhceEEEEEe---cceeEEEEEEcC-EEEEE-cCC-eEEE--EEcCCcceEEEcC-----------
Confidence 6533 022222221 457888888766 34444 333 6665 33333 233322
Q ss_pred CCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1060 SSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1060 ~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
.+++. +.+.| ..+.+.....|+.|..+.+...+
T Consensus 233 --~~~yl--lgy~~-~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 233 --KPLYL--LGYLP-KENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp --S--EE--EEEET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred --CceEE--EEEEc-cCCEEEEEECCCCEEEEEECHHH
Confidence 22332 33344 34688888899999988876443
No 350
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.86 E-value=0.012 Score=67.89 Aligned_cols=251 Identities=15% Similarity=0.072 Sum_probs=134.0
Q ss_pred cEEEEEEecCCCcEEEEEcCCC----eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDG----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.+...++||||++++++-+..| +++++|+.+|+.+.. . +.. ..-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IEN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EEE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------ccc--cccceEEEeCCCCEE
Confidence 3446789999997555544444 599999999976642 1 111 112239999999987
Q ss_pred EEEeCCC-----------eEEEEEecCCCccceeeeeecCcCC--eeEEEEecCCCceEEEEEcC-C-CcEEEEeCCC--
Q 001178 425 GVAFTKH-----------LIHLYTYQGSNDLCQSLEIDAHVGG--VNDLAFSYPNKQLCIVTCGD-D-KLIRVWDLSG-- 487 (1131)
Q Consensus 425 as~~~d~-----------~i~vwd~~~~~~~~~~~~~~~h~~~--V~~l~~s~d~~~~~l~s~s~-d-~~i~iwd~~~-- 487 (1131)
+....+. .|..|.+.++..-. ...+.+.... ...+..++|++.+++.+.+. + ..+.+-|...
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 7664333 37777776653221 1233333332 67889999999633323332 2 3577777333
Q ss_pred ---ceeEEecCCccCeEEEeecccCCccEEEEE---ecCCeEEEEeCCCCce---eEEecCCCceEEEEEEccCCCEEEE
Q 001178 488 ---RKLFQFEGHEAPVYSVCPHQKENIHFIFST---AVDGKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSADGSRLFS 558 (1131)
Q Consensus 488 ---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~ 558 (1131)
.....+......+....-+. ++.+++.. ...+.|...++..... ...+..+...+.-..+...+++|+.
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 23344433333333322221 22333333 2345677777776653 2234444443333333445666665
Q ss_pred EeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEE--EE--cCCcEEEEEcCCCeEE
Q 001178 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILA--AG--EDNQIKFWDMDNVNML 623 (1131)
Q Consensus 559 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~--~dg~i~iwd~~~~~~~ 623 (1131)
... .++...|++++...+...........+.+..+...++++.+.. .+ .-++++.||+.+++..
T Consensus 342 ~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 342 SYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 543 4557789999998455555555444445666665566654443 22 2467888899887654
No 351
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.84 E-value=0.00037 Score=77.06 Aligned_cols=133 Identities=12% Similarity=0.067 Sum_probs=89.7
Q ss_pred cccCCCcccceeeeccCCCcEEEEEEecCCCcEEEE-E---cCCCe----EEEEECCCCcccccccceeeccccccccee
Q 001178 330 TWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVV-G---CGDGE----ITLWDVGLRERLVSKPFKIWDMSNCSMMLQ 401 (1131)
Q Consensus 330 ~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~llas-g---~~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1131)
.++.....-+++..+.-.....++.||-...+.+.+ . +.+|. -.+|++..++....
T Consensus 188 L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv---------------- 251 (545)
T PF11768_consen 188 LLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV---------------- 251 (545)
T ss_pred EEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE----------------
Confidence 333333333444445555666888888644333333 2 22343 45666654432211
Q ss_pred ceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 402 ~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
..+--.....|.|++++|+.+.|+.|+.||.|++||...+... +..+.-..+.++|+|+|. ++++|+..|.+.
T Consensus 252 svtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ 324 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQ 324 (545)
T ss_pred EEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEE
Confidence 1122356788999999999999999999999999999775322 223445678999999999 899999999999
Q ss_pred EEeC
Q 001178 482 VWDL 485 (1131)
Q Consensus 482 iwd~ 485 (1131)
+||.
T Consensus 325 ~FD~ 328 (545)
T PF11768_consen 325 CFDM 328 (545)
T ss_pred EEEe
Confidence 9993
No 352
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.81 E-value=2.9e-05 Score=52.36 Aligned_cols=32 Identities=34% Similarity=0.513 Sum_probs=29.7
Q ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHhcCCC
Q 001178 4 LSRELVFLILQFLDEEKFKESVHRLEQESGFF 35 (1131)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1131)
.++++.++|+|||...||..|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.79 E-value=0.0057 Score=68.08 Aligned_cols=210 Identities=16% Similarity=0.171 Sum_probs=123.6
Q ss_pred CeeEEEecCCCCEEEEEe-CCeEEEEECCCcee-------------------------------------------EEEE
Q 001178 835 VVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKV-------------------------------------------MTTF 870 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~-------------------------------------------~~~~ 870 (1131)
.|+.+.|+++..-|+++. .|.|.||.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 467888988887888877 78888875532111 1112
Q ss_pred eCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe--ecc------cccCeeEEEEcc-----CC---CEEEE
Q 001178 871 MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK--LKG------HQKHITGLAFST-----NL---NILVS 934 (1131)
Q Consensus 871 ~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~--~~~------h~~~V~~l~~s~-----dg---~~l~s 934 (1131)
....++|++++.|. =-++|+|..+|.+.|.|++....+.. +.. ....|+++.|+. |+ -+|++
T Consensus 83 ~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 23467899999984 45899999999999999987776654 222 234688898873 33 36888
Q ss_pred EeCCCcEEEEEcCC-Cceeee-eeeecCCCCCCCCceEEE-EcCC---------------------CcEEEEEeCCeEEE
Q 001178 935 SGSDAQLIFWNTDT-WEKRKS-IAIQLPAGKLPVGETRVQ-FHSD---------------------QVRLLVNHETQLAI 990 (1131)
Q Consensus 935 ~~~Dg~v~lwd~~~-~~~~~~-~~~~~~~~~~~~~v~~v~-~s~d---------------------~~~l~~~~d~~i~v 990 (1131)
|...|.+.+|.+.- ...... ...... ......+..+. |+.+ ..++++.++..+++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 99999999998762 111111 111111 11223444443 3221 22667788999999
Q ss_pred EeCCCcccceeeecCCCCCCCeEEEEEc-----cCCCEEEEEecCCcEEEEECCCCceeeEecCC
Q 001178 991 YDGSKMECIRQWVPQDVLSSPISSAAYS-----CNSQLIYATFTDGSIGVFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 991 wd~~~~~~~~~~~~~~~~~~~v~~i~~s-----~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 1050 (1131)
+...+.+........ ......+++- ..+..|++-..+|.|++|.+...+.+..+...
T Consensus 240 ~~~~~~k~~~K~~~~---~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDD---PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp E-TT---EEEEE-SS----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred EeCCCCcccceeecc---ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence 999988776665422 2233445553 35678888889999999999999998888754
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.71 E-value=0.012 Score=60.59 Aligned_cols=216 Identities=14% Similarity=0.121 Sum_probs=114.9
Q ss_pred EEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeeccc-ccCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001178 869 TFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH-QKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 869 ~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
.+.+-...++.++|.|+++.++|+....+.|..++. +|+.+..+.-. .+..-+|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 344555679999999966889999999999988886 47777665432 3568899999888888877779999999984
Q ss_pred CCce----eeeeeeecCC-CCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCC---ccccee-----eecCCCCCCCeE
Q 001178 948 TWEK----RKSIAIQLPA-GKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSK---MECIRQ-----WVPQDVLSSPIS 1013 (1131)
Q Consensus 948 ~~~~----~~~~~~~~~~-~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~---~~~~~~-----~~~~~~~~~~v~ 1013 (1131)
.... .....+.... ......+..++|++.+..|++.. ..-..+|.+.. ...+.. +......-..+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 4321 1111111111 12225689999999877766654 44455555543 111111 110111245688
Q ss_pred EEEEccC-CCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEE
Q 001178 1014 SAAYSCN-SQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVI 1091 (1131)
Q Consensus 1014 ~i~~s~d-g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW 1091 (1131)
++++.|. |.+++...+...|.++| .+|+.+..+........-. ...-.+=.|+|.+ ++++.++ ++-+.+..|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~---~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLS---KDIPQPEGIAFDP-DGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-S---S---SEEEEEE-T-T--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcc---cccCCccEEEECC-CCCEEEE-cCCceEEEe
Confidence 9999986 45666677888999999 6777776665443221110 0111122488888 5555444 455545444
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.70 E-value=0.0077 Score=61.97 Aligned_cols=191 Identities=12% Similarity=0.153 Sum_probs=108.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
-...++.++|.|++..|+|+....+.|...+.. |+.+...+ +.+ .+..-.|++..++.+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence 445799999999988889999999999999974 66665322 333 35688899998888888
Q ss_pred EEeCCCeEEEEEecCCCc-cce----eeee--e-cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCC----CceeEE-
Q 001178 426 VAFTKHLIHLYTYQGSND-LCQ----SLEI--D-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS----GRKLFQ- 492 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~-~~~----~~~~--~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~----~~~~~~- 492 (1131)
+--.++.+.++++..... +.. ...+ . .++..+..++|.+.++. |+.+-...-..|+... ...+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence 776789999999844321 111 1111 1 35567999999999884 4445555556666622 222111
Q ss_pred -e------cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC---------ceEEEEEEccCCCEE
Q 001178 493 -F------EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG---------LWCTTMLYSADGSRL 556 (1131)
Q Consensus 493 -~------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~g~~l 556 (1131)
. ......+.++++++. .+++++-......|..+|. .++....+.... .....|+|.++|+..
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 1 123456788888875 4567777788888888884 444433332222 246789999998766
Q ss_pred EEE
Q 001178 557 FSC 559 (1131)
Q Consensus 557 ~~~ 559 (1131)
++.
T Consensus 237 Ivs 239 (248)
T PF06977_consen 237 IVS 239 (248)
T ss_dssp EEE
T ss_pred EEc
Confidence 554
No 356
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.69 E-value=1.7e-05 Score=87.03 Aligned_cols=206 Identities=14% Similarity=0.198 Sum_probs=132.8
Q ss_pred CCCcEEEEEEecCC-CcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCE
Q 001178 346 QGSSVVSMDFHPFH-HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1131)
Q Consensus 346 h~~~V~~~~fspdg-~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~ 423 (1131)
....+.|++++-+. +.++++|..+|.|-+-.+....-. ...+..+|....++++|++ |...
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 44567777766543 368999999999999887643221 1225668889999999999 6778
Q ss_pred EEEEe----CCCeEEEEEecCCCcc-ceeeeeec-CcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCc
Q 001178 424 IGVAF----TKHLIHLYTYQGSNDL-CQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHE 497 (1131)
Q Consensus 424 las~~----~d~~i~vwd~~~~~~~-~~~~~~~~-h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~ 497 (1131)
||.|- .|..+.|||+.++-.. .....+.+ -.....+++|..|.+ ++.+|...+.++++|....+.....-.+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~svnT 195 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSVNT 195 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhhhh
Confidence 88773 3567999999886211 01111222 344567899998887 7899999999999995444433332233
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEe-CCCCceeEEecCCC-----ceEEEEEEccCCC-EEEEEeecCCCCceEE
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWL-YDNVGSRVDYDAPG-----LWCTTMLYSADGS-RLFSCGTSKEGDSHLV 570 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd-~~~~~~~~~~~~~~-----~~v~~~~~s~~g~-~l~~~~~~~~~~~~i~ 570 (1131)
..+..+.+.|- .+.++++-. ||.|.+|| ..+.+.......+. ..+..++|.|-.. .+++... ..++|+
T Consensus 196 k~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIr 270 (783)
T KOG1008|consen 196 KYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIR 270 (783)
T ss_pred hhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEE
Confidence 44555555542 224665555 99999999 44443333221121 2488999998643 3444443 277899
Q ss_pred EEeCC
Q 001178 571 EWNES 575 (1131)
Q Consensus 571 iwd~~ 575 (1131)
++|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 99875
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.017 Score=65.01 Aligned_cols=211 Identities=14% Similarity=0.148 Sum_probs=149.1
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeC---CCcEEEEEeecce
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME---DSTIQIYNVRVDE 908 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~---dg~I~iwd~~~~~ 908 (1131)
.....+++++++..+.+.. ++.|.+.|..+.+......... ....++++| ++..+.++.. ++++.+.|..+++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCe
Confidence 3445788999998666665 6889999988887777765332 678899999 5544444444 6899999999888
Q ss_pred eEEeecccccCeeEEEEccCCCEEEEE-eCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe---
Q 001178 909 VKTKLKGHQKHITGLAFSTNLNILVSS-GSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--- 984 (1131)
Q Consensus 909 ~~~~~~~h~~~V~~l~~s~dg~~l~s~-~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--- 984 (1131)
.+.....-..+ ..++++|+|..+... ..++.|.+.|..+..... .. .............+.++|+|.++.+..
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~-~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS-VGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc-cccccccCCCCceEEECCCCCEEEEEeccC
Confidence 88776544455 899999999965555 478899999977754321 00 000011124557899999999887743
Q ss_pred -CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEECCCCceeeEecCCc
Q 001178 985 -ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-GSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 985 -d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
++.+...|..++.....-..... . ....+.++|+|+++.+.... +.+.+-|..+......+....
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred CCceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccc
Confidence 25888899888777665222210 2 45678999999999888544 899999999888777665444
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.62 E-value=0.029 Score=63.48 Aligned_cols=199 Identities=15% Similarity=0.131 Sum_probs=106.0
Q ss_pred EEecCCCCEEEEEeCC------------eEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001178 839 VALSKNDSYVMSAGGG------------KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1131)
Q Consensus 839 l~~s~dg~~la~~~dg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~ 906 (1131)
++.+|.|-.+|...+. .|+||+... +.+.++.-..+.+.++.|+. +.. |++-..||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~~~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDSGRIVGMGWTD-DEE-LVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECCCCEEEEEECC-CCe-EEEEEcCCEEEEEeCCC
Confidence 4555655555555433 599999865 45555543348999999997 544 44567999999999863
Q ss_pred ce------eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC----CCCCceE-EEEcC
Q 001178 907 DE------VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGK----LPVGETR-VQFHS 975 (1131)
Q Consensus 907 ~~------~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~----~~~~v~~-v~~s~ 975 (1131)
.. .+....-....+....+..+|-.+. ..++.+.+-+-.............+... ....... ..++.
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~ 188 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS 188 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec
Confidence 32 1111111222233334444553333 3344443332221110000000111100 0011111 23444
Q ss_pred CCcEEEE-EeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecC
Q 001178 976 DQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 976 d~~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
+....+. ..++.+.+.+....+. +. . .+++..|++||+|++||.-..+|.+.|...+-.+..+.+..
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~-~---~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---ID-S---DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---cc-C---CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 4443333 3445555444332211 11 1 46899999999999999999999999998776666666654
No 359
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.0034 Score=70.59 Aligned_cols=188 Identities=16% Similarity=0.141 Sum_probs=113.6
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCC---CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGD---GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
....+..-+|+|+++.+....-.. ..+.++|+++++...... ..+.-..-+|||||+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~~P~fspDG~ 250 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNGAPAFSPDGS 250 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccCCccCCCCCC
Confidence 556788889999998754443222 359999999987654211 223334568999999
Q ss_pred EEEEEe-CCC--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE--eCCCceeEEecCCc
Q 001178 423 FIGVAF-TKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW--DLSGRKLFQFEGHE 497 (1131)
Q Consensus 423 ~las~~-~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw--d~~~~~~~~~~~h~ 497 (1131)
+||.+. .|| .|.++|+.++. +. .+..-.+.-+.-.|+|||+. ++++.+..|.-.|| |..+.....+....
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~-~~---~Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKN-LP---RLTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCc-ce---ecccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 888664 455 46667777765 22 23333333347789999997 45555556654554 56666655554333
Q ss_pred cCeEEEeecccCCccEEEEEec-CCe--EEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEee
Q 001178 498 APVYSVCPHQKENIHFIFSTAV-DGK--IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
+.-..-.| +++|++++..+. +|. |.+.|+.+... ............-.+.++|+.++..+.
T Consensus 326 ~~~~~p~~--SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 326 GGNSNPVW--SPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCCcCccC--CCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 32223333 567777776664 344 55566655553 222223333455678888888877653
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.61 E-value=0.17 Score=59.48 Aligned_cols=109 Identities=10% Similarity=0.056 Sum_probs=65.8
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCc-eEE----------EEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-WCT----------TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~----------~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
..++.++.++.|.-.|.++++.+..+..... .+. .+++ .+..++.++. ++.+.-.|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~----dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL----DARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 4666777778888888888877776543211 111 1122 2334555543 789999999999988
Q ss_pred EEEecccCC---ceEE-EEEeCCCCEEEEEEc------CCcEEEEEcCCCeEEEEEec
Q 001178 581 RTYIGFRKK---SAGV-VQFDTTRNRILAAGE------DNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 581 ~~~~~~~~~---~v~~-~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 628 (1131)
-.+...... .+.+ -.+. +..++++.. +|.|+.+|..+|+.+-....
T Consensus 144 W~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred eecccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 765432110 1111 1111 335555542 68999999999998876543
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.60 E-value=0.0088 Score=67.33 Aligned_cols=191 Identities=14% Similarity=0.156 Sum_probs=114.5
Q ss_pred ecCcCCeeEEEEecCCCceEEEEEcCC--CcEEEEe-CCCce--eEEecCCccCeEEEeecccCCcc-EEEEEecCCeEE
Q 001178 451 DAHVGGVNDLAFSYPNKQLCIVTCGDD--KLIRVWD-LSGRK--LFQFEGHEAPVYSVCPHQKENIH-FIFSTAVDGKIK 524 (1131)
Q Consensus 451 ~~h~~~V~~l~~s~d~~~~~l~s~s~d--~~i~iwd-~~~~~--~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~ 524 (1131)
..-...+..-+|+|+++.+..++-... ..+.++| ..++. +..+.++.. .-.|+ +||+ ++++...||...
T Consensus 189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fs--pDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFS--PDGSKLAFSSSRDGSPD 263 (425)
T ss_pred cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCC--CCCCEEEEEECCCCCcc
Confidence 334456777899999996433433333 3588888 44433 333333332 33454 4444 455667777655
Q ss_pred EE--eCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCE
Q 001178 525 AW--LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNR 602 (1131)
Q Consensus 525 ~w--d~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 602 (1131)
+| |+....... +......-..-.|+|||++++..+ +..+.-.|++.+...+...+....... -..-.++|||++
T Consensus 264 iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~~--~~~p~~SpdG~~ 339 (425)
T COG0823 264 IYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGGG--NSNPVWSPDGDK 339 (425)
T ss_pred EEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCCC--CcCccCCCCCCE
Confidence 55 665555322 333333334778999999999987 556667899999887665333322222 226779999998
Q ss_pred EEEEEc-CCc--EEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC
Q 001178 603 ILAAGE-DNQ--IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 603 l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
++..+. +|. |.+.++.++.....+.... ....-.|.++++.+...+..
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 888664 344 6667776665444443322 23456777888877665543
No 362
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.53 E-value=0.21 Score=58.72 Aligned_cols=148 Identities=9% Similarity=0.112 Sum_probs=88.5
Q ss_pred cEEEEEeecceeEEeecccccCeeE---------EEEccCCC---EEEEEeCCCcEEEEEcCCCceeeeeee--------
Q 001178 898 TIQIYNVRVDEVKTKLKGHQKHITG---------LAFSTNLN---ILVSSGSDAQLIFWNTDTWEKRKSIAI-------- 957 (1131)
Q Consensus 898 ~I~iwd~~~~~~~~~~~~h~~~V~~---------l~~s~dg~---~l~s~~~Dg~v~lwd~~~~~~~~~~~~-------- 957 (1131)
+|.-.|+++|+.+-.++.....+.. +.+..+|+ .++.+..+|.+.+.|..+++.+.....
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 5666788888887666542222222 22224666 788999999999999999886421100
Q ss_pred ec--CCCC------------------------C-CCCceEEEEcCCCcEEEEEe--------------------------
Q 001178 958 QL--PAGK------------------------L-PVGETRVQFHSDQVRLLVNH-------------------------- 984 (1131)
Q Consensus 958 ~~--~~~~------------------------~-~~~v~~v~~s~d~~~l~~~~-------------------------- 984 (1131)
.. ..+. . ...-..++++|+..++++..
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 00 0000 0 00011256777666655411
Q ss_pred --------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecC
Q 001178 985 --------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 985 --------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
-+.|.-+|+.+++..-...... +...-.+.-.|.+++.++.||.++.+|.++|+.+.+.+.
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~----p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDF----PLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCC----CCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 1347778888887766554321 111111223556777888899999999999999988865
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.52 E-value=0.014 Score=64.43 Aligned_cols=175 Identities=15% Similarity=0.180 Sum_probs=104.9
Q ss_pred CeEEEEECCCceeEEEEeCC-CCCeeEEEE---eCC---CCcEEEEEeC----------CCcEEEEEeecc-----eeEE
Q 001178 854 GKVSLFNMMNFKVMTTFMSP-PPASTFLAF---HPQ---DNNIIAIGME----------DSTIQIYNVRVD-----EVKT 911 (1131)
Q Consensus 854 g~i~vwd~~~~~~~~~~~~~-~~~i~~l~~---s~~---~~~~la~g~~----------dg~I~iwd~~~~-----~~~~ 911 (1131)
..|++.|..+.+.+.++.-. ...+.+++. ..+ ...+|++|+. .|.|.++++... ++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35888898888877766532 334554443 221 1578888864 288999999884 2221
Q ss_pred e-ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCc-eeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeE
Q 001178 912 K-LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWE-KRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQL 988 (1131)
Q Consensus 912 ~-~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i 988 (1131)
. -....++|++++-- +++ |+.+. .+.|.+|++...+ .......... ..+.++... +.++++|+ ...+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~-----~~i~sl~~~--~~~I~vgD~~~sv 151 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSP-----FYITSLSVF--KNYILVGDAMKSV 151 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BS-----SSEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecce-----EEEEEEecc--ccEEEEEEcccCE
Confidence 1 12357889998877 444 44433 4689999999877 3322222211 234444443 55888876 5667
Q ss_pred EEEeCCC-cccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 989 AIYDGSK-MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 989 ~vwd~~~-~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
.++..+. ...+..+.. ......++++.|-+|++.+++++.+|.+.++...
T Consensus 152 ~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 7664432 222222222 1225678999999777899999999999999886
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.44 E-value=0.011 Score=69.62 Aligned_cols=187 Identities=11% Similarity=0.058 Sum_probs=105.5
Q ss_pred CCeeEEEecCCCCEEEEEe-------CC--eEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC--------
Q 001178 834 DVVPCVALSKNDSYVMSAG-------GG--KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED-------- 896 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-------- 896 (1131)
..+.+.++||||+.++... +. .|.+++.. +.......+ ...+.-.|+| ++..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4677899999999887664 32 46666653 333222222 2488899999 76666665432
Q ss_pred ----CcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEE---EEcCCCceeeeeeeecCCCCCCCCce
Q 001178 897 ----STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIF---WNTDTWEKRKSIAIQLPAGKLPVGET 969 (1131)
Q Consensus 897 ----g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~l---wd~~~~~~~~~~~~~~~~~~~~~~v~ 969 (1131)
+.+.+.+++.++... ...+.|..+.|||||.+++... ++.|++ -....++........... .....+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~-~l~~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGP-GLGDTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeec-ccCCccc
Confidence 233333444333222 2356799999999999988766 477777 444444422211211111 1213457
Q ss_pred EEEEcCCCcEEEEEeCCe--EEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 001178 970 RVQFHSDQVRLLVNHETQ--LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSI 1033 (1131)
Q Consensus 970 ~v~~s~d~~~l~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i 1033 (1131)
.+.|..++.+++...++. ++..++. |.....+ .......++.+++-+++ .|+.++.++.+
T Consensus 501 ~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 501 SLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cceEecCCEEEEEecCCCCceEEEecC-Ccccccc-CCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 899999999765544333 4444444 2222221 22222457777777753 45555555533
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.41 E-value=0.38 Score=54.56 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=37.4
Q ss_pred eEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
.|.+|+.. |+++..+.-.. +.+-.+.|+.+ ..|++...||.++++|+....
T Consensus 62 ~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS-GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCC-CCEeEEEEECC-CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce
Confidence 58888854 66666655433 47888999875 567777899999999987433
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.16 Score=57.14 Aligned_cols=243 Identities=15% Similarity=0.177 Sum_probs=153.3
Q ss_pred CeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe
Q 001178 835 VVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~ 912 (1131)
....+.+.+++..+.... ...+...+...................+++++.+.+..+....+..|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 455688888887666655 334555555522222222222244567788884555777776779999999877766655
Q ss_pred ecccccCeeEEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCe
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGS---DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQ 987 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~---Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~ 987 (1131)
..--. .-..++++++++.+..+.. ++++.+.|-.+.+..... +.+. .+ ..++++|+|..+.+.. ++.
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~----~vG~--~P-~~~a~~p~g~~vyv~~~~~~~ 183 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI----PVGN--TP-TGVAVDPDGNKVYVTNSDDNT 183 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE----ecCC--Cc-ceEEECCCCCeEEEEecCCCe
Confidence 43222 5678999999977666555 678888888876654432 2222 12 8899999999888764 889
Q ss_pred EEEEeCCCcccceeeecC--CCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECCCCceeeEecCCccccCCCCCCCC
Q 001178 988 LAIYDGSKMECIRQWVPQ--DVLSSPISSAAYSCNSQLIYATFTD---GSIGVFDADSLRLRCRIAPSAYMSQASPNSSQ 1062 (1131)
Q Consensus 988 i~vwd~~~~~~~~~~~~~--~~~~~~v~~i~~s~dg~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1131)
+.+.|........ -... ......-..+.+++||.++.+.... +.+.+.|..++.......... .
T Consensus 184 v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~----------~ 252 (381)
T COG3391 184 VSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG----------S 252 (381)
T ss_pred EEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc----------c
Confidence 9999977665553 1100 1113455678999999977777644 489999999888766522211 1
Q ss_pred ccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1063 TVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1063 ~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
. .+..+...|.+....+.-+..+.+.+-|..+..
T Consensus 253 ~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 253 G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 1 233477778443333333445677776665543
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.067 Score=53.84 Aligned_cols=239 Identities=15% Similarity=0.117 Sum_probs=140.6
Q ss_pred CeeEEEecCCCCE-EEEEe-CCe-EEEEECCCceeEEEEeCCCCC--eeEEEEeCCCCcEEEEEeCC-----CcEEEEEe
Q 001178 835 VVPCVALSKNDSY-VMSAG-GGK-VSLFNMMNFKVMTTFMSPPPA--STFLAFHPQDNNIIAIGMED-----STIQIYNV 904 (1131)
Q Consensus 835 ~i~~l~~s~dg~~-la~~~-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~~la~g~~d-----g~I~iwd~ 904 (1131)
....|+|+|--.. ++.+- -|+ ..++|..+.+...++....++ --.=.||| ||.+|...-.| |.|-|||.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEec
Confidence 3445778776544 44444 355 788999988877776543322 22346999 88888766444 67999998
Q ss_pred ecc-eeEEeecccccCeeEEEEccCCCEEEEEeC------C------------CcEEEEEcCCCceeeeeeeecCCCCCC
Q 001178 905 RVD-EVKTKLKGHQKHITGLAFSTNLNILVSSGS------D------------AQLIFWNTDTWEKRKSIAIQLPAGKLP 965 (1131)
Q Consensus 905 ~~~-~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~------D------------g~v~lwd~~~~~~~~~~~~~~~~~~~~ 965 (1131)
..+ +.+..+..|.-.--.+.+.+||+.|+.+.. | -.+.+-|..+++...+..+ +...+.
T Consensus 148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L--p~~l~~ 225 (366)
T COG3490 148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL--PASLRQ 225 (366)
T ss_pred ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC--chhhhh
Confidence 854 556778888777788999999999988743 1 1233334333333222211 111122
Q ss_pred CCceEEEEcCCCcEEEEEe------CCeEEEEeCCCcccceeeecCC----CCCCCeEEEEEccCCCEEEEEe-cCCcEE
Q 001178 966 VGETRVQFHSDQVRLLVNH------ETQLAIYDGSKMECIRQWVPQD----VLSSPISSAAYSCNSQLIYATF-TDGSIG 1034 (1131)
Q Consensus 966 ~~v~~v~~s~d~~~l~~~~------d~~i~vwd~~~~~~~~~~~~~~----~~~~~v~~i~~s~dg~~l~s~~-~dg~i~ 1034 (1131)
..+..++..+||+.++.+. |.--.+=-...++.+.-+.... .....|-+|+...+..+++..+ ..+...
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 5678888888888777532 1111111112222222221110 0144677888887777666666 556678
Q ss_pred EEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEec
Q 001178 1035 VFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1035 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~ 1093 (1131)
+||..+|..+......... .|.- ...-++..+.+|.+.++.-
T Consensus 306 i~da~tG~vv~~a~l~daa--------------Gva~---~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 306 IWDAATGAVVSEAALPDAA--------------GVAA---AKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred EEEcCCCcEEecccccccc--------------ccee---ccCceEEecCCceEEeccc
Confidence 8999999977544322210 1221 2234667777898888754
No 368
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.32 E-value=0.018 Score=68.68 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=99.7
Q ss_pred CCcEEEE-EeCCCcEEEEEeecceeEEeecccccC-eeEEEEcc-----CCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 001178 886 DNNIIAI-GMEDSTIQIYNVRVDEVKTKLKGHQKH-ITGLAFST-----NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ 958 (1131)
Q Consensus 886 ~~~~la~-g~~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~s~-----dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~ 958 (1131)
+..+|.. ......|+-.|++.|+.+..+..|... |..++-.. +...-+.|-.+..+..||..-.... ....+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~v~~~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-LVDSQ 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-eeecc
Confidence 4444443 345678999999999999999988754 55554321 1233455667778999998753210 00111
Q ss_pred cCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 001178 959 LPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 959 ~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
...........+++-+.+|...+.+.+|.||+||-- |..-++..+. ...+|..|..+.||+||++.+ +..+.+++.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~--lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALPG--LGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCCC--CCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 111223367788888888887777789999999954 3333333322 278999999999999999876 778888886
No 369
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.29 E-value=0.00015 Score=79.90 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=106.2
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee--EEecCCCceEEEEEEcc-CCCEEEEEeecCCCCceEEEEeCC
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR--VDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
.+.|+++....+..+++.|..+|.|-+-..+..... .....+...+++++|++ |.+.||++-...+.+..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 455555554455567888888999988877654433 23445666899999998 556677765444568889999998
Q ss_pred CC--ee--eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC-eEEEEEeccCCCCCcceEEEcC-CCCEEEE
Q 001178 576 EG--AL--KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV-NMLTSTEAEGGLPSLPRLRFNK-EGNLLVV 649 (1131)
Q Consensus 576 ~~--~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~v~~sp-~~~~l~~ 649 (1131)
++ .+ -..|.+.......++||..+.+.+++|...+.+.++|++.. .....+.. ..+..+...| .+.++++
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT----k~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT----KYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh----hhcccceecCCCCCceec
Confidence 76 11 12233222335667889888889999999999999998732 22222211 1356677778 6677776
Q ss_pred EECCCcEEEEec
Q 001178 650 TTADQGIKILAN 661 (1131)
Q Consensus 650 ~~~dg~i~iw~~ 661 (1131)
.. ||.|.+||.
T Consensus 214 ~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 214 NS-DGDIAIWDT 224 (783)
T ss_pred cc-cCceeeccc
Confidence 55 999999993
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.27 E-value=0.17 Score=54.52 Aligned_cols=236 Identities=14% Similarity=0.134 Sum_probs=135.6
Q ss_pred cCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeE
Q 001178 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKV 856 (1131)
Q Consensus 777 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i 856 (1131)
..++.|+.|.++| +.+++...... ... + .....|..+...++-+.+++-+|+.+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~---------------------~~~--i--~~~~~I~ql~vl~~~~~llvLsd~~l 58 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK---------------------PTR--I--LKLSSITQLSVLPELNLLLVLSDGQL 58 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc---------------------cee--E--eecceEEEEEEecccCEEEEEcCCcc
Confidence 4577888998888 77777611000 000 0 12334899999999999999999999
Q ss_pred EEEECCCceeEEEE--------------eCCCCCeeEEE--EeCCCCcEEEEEeCCCcEEEEEeecc-----eeEEeecc
Q 001178 857 SLFNMMNFKVMTTF--------------MSPPPASTFLA--FHPQDNNIIAIGMEDSTIQIYNVRVD-----EVKTKLKG 915 (1131)
Q Consensus 857 ~vwd~~~~~~~~~~--------------~~~~~~i~~l~--~s~~~~~~la~g~~dg~I~iwd~~~~-----~~~~~~~~ 915 (1131)
.++++......... ......+...+ -...+...|+++. ...|.+|..... +....+.
T Consensus 59 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~- 136 (275)
T PF00780_consen 59 YVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS- 136 (275)
T ss_pred EEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-
Confidence 99998765444311 01122344444 1122445555554 448999888753 3344444
Q ss_pred cccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC-----CCCCCCceEEEEcCCCcEEEEEeCCeEEE
Q 001178 916 HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA-----GKLPVGETRVQFHSDQVRLLVNHETQLAI 990 (1131)
Q Consensus 916 h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~s~d~~~l~~~~d~~i~v 990 (1131)
-...+.+++|. ++.++.+..++ ..+.|+.++............ .........+.--+++.+|++-++-.+ .
T Consensus 137 lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~-f 212 (275)
T PF00780_consen 137 LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGV-F 212 (275)
T ss_pred cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEE-E
Confidence 34778999998 55777776655 788999875542221111000 000112223333344566665433222 2
Q ss_pred EeCCCcccce-eeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCc
Q 001178 991 YDGSKMECIR-QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 991 wd~~~~~~~~-~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
.+. .|+..+ ..... .....++++. ..||++.+ ++.|.||++.+++++..+....
T Consensus 213 v~~-~G~~~r~~~i~W---~~~p~~~~~~--~pyli~~~-~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 213 VNK-NGEPSRKSTIQW---SSAPQSVAYS--SPYLIAFS-SNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EcC-CCCcCcccEEEc---CCchhEEEEE--CCEEEEEC-CCEEEEEECcCCcEEEEEECCC
Confidence 232 344333 22222 4466677774 45888766 4669999999999988876543
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.27 E-value=0.041 Score=58.95 Aligned_cols=185 Identities=15% Similarity=0.085 Sum_probs=110.8
Q ss_pred eEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeC-----CCCCeeEEEEeCCCCcEEEEEeC-----C----CcEEEE
Q 001178 837 PCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMS-----PPPASTFLAFHPQDNNIIAIGME-----D----STIQIY 902 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~~la~g~~-----d----g~I~iw 902 (1131)
.++..-.++..|+++ +..+.+++.+++..+..+.. .....+.+...| +|.+.++... . ..-.||
T Consensus 69 ~~~~~~d~~g~Lv~~-~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~ly 146 (307)
T COG3386 69 SSGALIDAGGRLIAC-EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLY 146 (307)
T ss_pred ccceeecCCCeEEEE-ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEE
Confidence 344443344444443 33455666665555333221 224566788888 6776664433 0 112455
Q ss_pred Eee-cceeEEeecccccCeeEEEEccCCCEEEEEeCC-CcEEEEEcCC--CceeeeeeeecCCCCCCCCceEEEEcCCCc
Q 001178 903 NVR-VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD-AQLIFWNTDT--WEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 903 d~~-~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D-g~v~lwd~~~--~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 978 (1131)
.+. .+..+..+..|-..-+.|+||||++.|..+... +.|.-|++.. +............ ......-.++...+|.
T Consensus 147 r~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~-~~~G~PDG~~vDadG~ 225 (307)
T COG3386 147 RVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFD-EEPGLPDGMAVDADGN 225 (307)
T ss_pred EEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEcc-CCCCCCCceEEeCCCC
Confidence 555 566667777766667889999999887776654 7788887763 2211111111111 1224556778888888
Q ss_pred EEEEEe-C-CeEEEEeCCCcccceeeecCCCCCCCeEEEEEc-cCCCEEEEEe
Q 001178 979 RLLVNH-E-TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYS-CNSQLIYATF 1028 (1131)
Q Consensus 979 ~l~~~~-d-~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s-~dg~~l~s~~ 1028 (1131)
+.+++. + +.|.+|+.+ |+.+..+..+ ...+++++|- ++.+.|++.+
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~l~~~i~lP---~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GKLLGEIKLP---VKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEEecccCCceEEEECCC-CcEEEEEECC---CCCCccceEeCCCcCEEEEEe
Confidence 876543 3 389999999 8888888776 4678888885 3556665555
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.25 E-value=0.047 Score=64.39 Aligned_cols=212 Identities=13% Similarity=0.113 Sum_probs=111.3
Q ss_pred CCeeEEEEeCCCCcEEEEEe------CCC--cEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCC-CcEEEEE
Q 001178 875 PASTFLAFHPQDNNIIAIGM------EDS--TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD-AQLIFWN 945 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~------~dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D-g~v~lwd 945 (1131)
..+...+++| +++.+|... .|+ .|.+++. .+.......+. ..+.-.|+|||+.|++.... ..+++.+
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678899999 676666554 244 4444453 23332233333 38889999999988877533 2222222
Q ss_pred cCCCceeeeeeeec--CCCCCCCCceEEEEcCCCcEEEEEeCCeEEE---EeCCCccccee-----eecCCCCCCCeEEE
Q 001178 946 TDTWEKRKSIAIQL--PAGKLPVGETRVQFHSDQVRLLVNHETQLAI---YDGSKMECIRQ-----WVPQDVLSSPISSA 1015 (1131)
Q Consensus 946 ~~~~~~~~~~~~~~--~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v---wd~~~~~~~~~-----~~~~~~~~~~v~~i 1015 (1131)
-............. ........+..+.|||||..++...+++|++ -....|. ... +... ....+.++
T Consensus 426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~--l~~~~~~l 502 (591)
T PRK13616 426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPG--LGDTAVSL 502 (591)
T ss_pred cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecc--cCCccccc
Confidence 21111111111100 0001225799999999999999877888887 4444454 111 1111 13346889
Q ss_pred EEccCCCEEEEEecCCcEEEEECCC-CceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1016 AYSCNSQLIYATFTDGSIGVFDADS-LRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1016 ~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
.|..++.++ ++..++...+|.+.- |.....+... +....+ ..|+-.+ ..+..+..+|.+.+=.-.
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~--------n~~~~v--~~vaa~~---~~iyv~~~~g~~~l~~~~ 568 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSR--------NLSAPV--VAVAASP---STVYVTDARAVLQLPNSD 568 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCCccccccCCC--------CccCce--EEEecCC---ceEEEEcCCceEEecCCC
Confidence 999999955 555555555665431 2221111110 011112 2455444 346666777733322223
Q ss_pred CCccccccccCCC
Q 001178 1095 ETERKWGVAVPVD 1107 (1131)
Q Consensus 1095 ~~~~~w~~~~p~~ 1107 (1131)
.++..|..-.+..
T Consensus 569 ~~~~~W~ev~~l~ 581 (591)
T PRK13616 569 SGDQYWREVPGLM 581 (591)
T ss_pred CCCCCceECcccc
Confidence 3455688765543
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.24 E-value=0.089 Score=53.00 Aligned_cols=239 Identities=12% Similarity=0.140 Sum_probs=134.3
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCe-EEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGE-ITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
...-..++|+|.-.+-++.+-.-|+ ..++|..+++......- . ...-+-|| =.|||||.+|.
T Consensus 67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s----------~-~~RHfyGH------Gvfs~dG~~LY 129 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS----------Q-EGRHFYGH------GVFSPDGRLLY 129 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec----------c-cCceeecc------cccCCCCcEEE
Confidence 3444568888887666666666665 56889887765532100 0 00013345 35999999998
Q ss_pred EEeCC-----CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC------------------CCcEEE
Q 001178 426 VAFTK-----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD------------------DKLIRV 482 (1131)
Q Consensus 426 s~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~------------------d~~i~i 482 (1131)
..-.| |.|-|||...+ +...-++..|.-.-..+.|.+||+. ++.+.. .-++.+
T Consensus 130 ATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrt--lvvanGGIethpdfgR~~lNldsMePSlvl 205 (366)
T COG3490 130 ATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRT--LVVANGGIETHPDFGRTELNLDSMEPSLVL 205 (366)
T ss_pred eecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcE--EEEeCCceecccccCccccchhhcCccEEE
Confidence 76443 78999999853 5566678888888889999999994 444421 113445
Q ss_pred Ee-CCCceeEEec----CCccCeEEEeecccCCccEEEEEecCCe-----EEEEeCCCCceeEEecCC-------CceEE
Q 001178 483 WD-LSGRKLFQFE----GHEAPVYSVCPHQKENIHFIFSTAVDGK-----IKAWLYDNVGSRVDYDAP-------GLWCT 545 (1131)
Q Consensus 483 wd-~~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~s~dg~-----i~~wd~~~~~~~~~~~~~-------~~~v~ 545 (1131)
.| .+|..+.+.. .+.-.|..++. ..||..++.+-..|. -.+=-...++....+... ...|-
T Consensus 206 ld~atG~liekh~Lp~~l~~lSiRHld~--g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYig 283 (366)
T COG3490 206 LDAATGNLIEKHTLPASLRQLSIRHLDI--GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIG 283 (366)
T ss_pred EeccccchhhhccCchhhhhcceeeeee--CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhh
Confidence 55 5565553322 23344555554 233333332221111 000000111111111111 12467
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 616 (1131)
+++.+.+..+++..+. ..+...+||..+|..+..-.-. .+.-..+...-+++.+.+|.+.++.
T Consensus 284 siA~n~~~glV~lTSP---~GN~~vi~da~tG~vv~~a~l~-----daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 284 SIAANRRDGLVALTSP---RGNRAVIWDAATGAVVSEAALP-----DAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred heeecccCCeEEEecC---CCCeEEEEEcCCCcEEeccccc-----ccccceeccCceEEecCCceEEecc
Confidence 7888877777766654 2567889999999887554321 1122233445566677778888774
No 374
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0023 Score=67.38 Aligned_cols=111 Identities=10% Similarity=0.112 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc----------HHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHH
Q 001178 6 RELVFLILQFLDEEKFKESVHRLEQESGFFFN----------MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFE 75 (1131)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~ 75 (1131)
+.+..+|..++...|+.+.+..|-+|||...+ +.++-++|..|+-.-|++.+..-....... ...+.|.
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~LE~~ 195 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-cccHHHH
Confidence 34689999999999999999999999998752 788899999999999999987642211111 2348899
Q ss_pred HHHHHHHHHHhcCCHH--HHHHHHHhhcccccccCHHHHHHHHH
Q 001178 76 IRKQKYLEALDRHDRA--KAVEILVKDLKVFSTFNEELFKEITQ 117 (1131)
Q Consensus 76 i~~~~~~Ell~~~~~~--~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1131)
+..+.|++++..|... +|++..|+.++|+.......++.|-.
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~ 239 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG 239 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 9999999999998877 99999999999996544444554443
No 375
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.20 E-value=0.25 Score=56.95 Aligned_cols=243 Identities=13% Similarity=0.140 Sum_probs=122.9
Q ss_pred CEEEEEEcCCCCEEEEE-eCC----CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC---------
Q 001178 411 SVSRVAWSPDGNFIGVA-FTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD--------- 476 (1131)
Q Consensus 411 ~V~~~~~spdg~~las~-~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~--------- 476 (1131)
.+..+++||||+++|.+ +.. .+++++|+++|+.+... +..- ....+.|.+|++. ++.+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--cccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 45578999999999876 333 36999999998654321 2211 1233999999985 3444322
Q ss_pred -CCcEEEEe-CCCce--eEEecCCccCe--EEEeecccCCccEEEEEecC----CeEEEEeCCCC----ceeEEecCCCc
Q 001178 477 -DKLIRVWD-LSGRK--LFQFEGHEAPV--YSVCPHQKENIHFIFSTAVD----GKIKAWLYDNV----GSRVDYDAPGL 542 (1131)
Q Consensus 477 -d~~i~iwd-~~~~~--~~~~~~h~~~v--~~~~~~~~~~~~~l~s~s~d----g~i~~wd~~~~----~~~~~~~~~~~ 542 (1131)
...|+.|. -+... ...+....... ..+.. +.++++++..+.. ..+.+.++... .....+.....
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 22367777 22221 23344433333 34444 5666776654322 34677777664 12222222222
Q ss_pred eE-EEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee---eEEEecccCCceEEEEEeCCCCEEEEE-EcCC--cEEEE
Q 001178 543 WC-TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL---KRTYIGFRKKSAGVVQFDTTRNRILAA-GEDN--QIKFW 615 (1131)
Q Consensus 543 ~v-~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~iw 615 (1131)
.+ ..+... +..+...+......+.|...++..... ...+..+.. .+....+...+++|+.. ..++ .|+++
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEEE
Confidence 23 233333 443333333334467888888877652 223443333 23333334445555554 3333 58889
Q ss_pred EcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEE--EC--CCcEEEEecCCC
Q 001178 616 DMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT--TA--DQGIKILANADG 664 (1131)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~--~~--dg~i~iw~~~~~ 664 (1131)
++..+.....+..... ..|..+...+++..+... +- -+++..||+.++
T Consensus 355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 9984555555554432 234555555555544333 22 246777777766
No 376
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.16 E-value=0.44 Score=50.80 Aligned_cols=159 Identities=11% Similarity=0.122 Sum_probs=85.1
Q ss_pred CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEc-CCCc
Q 001178 872 SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNT-DTWE 950 (1131)
Q Consensus 872 ~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~-~~~~ 950 (1131)
...+.+..+..++ ++++++++..-....-|+--...-...-+.-...|.+|.|+|++.+.+.+ ..|.|++=+. ...+
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 4456788888898 89999887655555566643211122223345789999999998776654 7888887762 2211
Q ss_pred eeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC
Q 001178 951 KRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD 1030 (1131)
Q Consensus 951 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d 1030 (1131)
.-.. .. .+.....-.+..+++.+++...+++..|.+. ...+.|+.-+.-..........+.|.|.++.+-++.| .+
T Consensus 220 ~w~~-~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~ 295 (302)
T PF14870_consen 220 TWSE-PI-IPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QD 295 (302)
T ss_dssp EE----B--TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--ST
T ss_pred cccc-cc-CCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CC
Confidence 1111 11 1111222457899999999999988888554 4556666555544333335678999998776666655 58
Q ss_pred CcEEEE
Q 001178 1031 GSIGVF 1036 (1131)
Q Consensus 1031 g~i~vw 1036 (1131)
|.|.-|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 888766
No 377
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.14 E-value=0.17 Score=56.32 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=57.8
Q ss_pred EEEecCCCCEEEEEeCCeEEE----EECC-----CceeEEEEe----CC-CCCeeEEEEeCC----------CCcEEEEE
Q 001178 838 CVALSKNDSYVMSAGGGKVSL----FNMM-----NFKVMTTFM----SP-PPASTFLAFHPQ----------DNNIIAIG 893 (1131)
Q Consensus 838 ~l~~s~dg~~la~~~dg~i~v----wd~~-----~~~~~~~~~----~~-~~~i~~l~~s~~----------~~~~la~g 893 (1131)
.++.+|++++||.+....+.+ |+.. .+....... .. ...|+++.+-|- |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 578899999999998655333 5331 122222221 11 146777766441 46889999
Q ss_pred eCCCcEEEEEeecceeEEeecccccCeeEEEEc
Q 001178 894 MEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFS 926 (1131)
Q Consensus 894 ~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 926 (1131)
..+|.|++|.- +|.++..-.-|..+|..+..-
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 99999999984 666665555677777777764
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.17 Score=54.35 Aligned_cols=222 Identities=17% Similarity=0.084 Sum_probs=131.7
Q ss_pred EEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 001178 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433 (1131)
Q Consensus 354 ~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i 433 (1131)
.|.|++..++.+--..+.|.-|+..+++... + .+.+.+.++..-.++..|+++.. -+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~-~~p~~~~~~~~~d~~g~Lv~~~~--g~ 87 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------F-PSPGGFSSGALIDAGGRLIACEH--GV 87 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------E-ECCCCcccceeecCCCeEEEEcc--cc
Confidence 4677777777777778899999998775432 1 12233455555555555655533 36
Q ss_pred EEEEecCCCccceeeee-ecC-cCCeeEEEEecCCCceEEEEEcC-----------CCcEEEEeCCCceeEEecCCccCe
Q 001178 434 HLYTYQGSNDLCQSLEI-DAH-VGGVNDLAFSYPNKQLCIVTCGD-----------DKLIRVWDLSGRKLFQFEGHEAPV 500 (1131)
Q Consensus 434 ~vwd~~~~~~~~~~~~~-~~h-~~~V~~l~~s~d~~~~~l~s~s~-----------d~~i~iwd~~~~~~~~~~~h~~~v 500 (1131)
.+++.+++......... .+. ...-+.+...|+|. +.++... -|.++..|..+..+..+..+-..-
T Consensus 88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP 165 (307)
T ss_pred EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence 77777655532222111 122 23567889999998 3333222 123444444566767676666677
Q ss_pred EEEeecccCCccEEEEE-ecCCeEEEEeCCC-----Cce--eEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEE
Q 001178 501 YSVCPHQKENIHFIFST-AVDGKIKAWLYDN-----VGS--RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~-s~dg~i~~wd~~~-----~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 572 (1131)
+.++|+|+ ++.++.+ +..+.|.-|+++. ... ...+....+..-.++...+|.+-+++.. +.+.|..|
T Consensus 166 NGla~SpD--g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~~ 240 (307)
T COG3386 166 NGLAFSPD--GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVRF 240 (307)
T ss_pred CceEECCC--CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEEE
Confidence 88999664 4455554 5568888887762 111 1222223344556778888887754432 13489999
Q ss_pred eCCCCeeeEEEecccCCceEEEEEe-CCCCEEEEEE
Q 001178 573 NESEGALKRTYIGFRKKSAGVVQFD-TTRNRILAAG 607 (1131)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 607 (1131)
+.. |+++..+..... .+++++|- ++.+.|++.+
T Consensus 241 ~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 241 NPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 988 888888887543 56667764 4445555444
No 379
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.06 E-value=0.082 Score=58.33 Aligned_cols=173 Identities=18% Similarity=0.173 Sum_probs=101.1
Q ss_pred eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEE---EEEcCC----CCEEEEEeC----------CCeE
Q 001178 371 EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR---VAWSPD----GNFIGVAFT----------KHLI 433 (1131)
Q Consensus 371 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~---~~~spd----g~~las~~~----------d~~i 433 (1131)
.|+|.|..+.+.+....+ .. ...+.+ +.|..+ ..+|++|+. .|.|
T Consensus 3 ~i~l~d~~~~~~~~~~~l-----------------~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri 64 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFEL-----------------EP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRI 64 (321)
T ss_dssp EEEEEETTTSSEEEEEEE-----------------ET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEE
T ss_pred EEEEEeCCCCeEEEEEEC-----------------CC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEE
Confidence 578888877776643222 11 223443 334433 467887743 2889
Q ss_pred EEEEecCC----CccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecC--CccCeEEEeec
Q 001178 434 HLYTYQGS----NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG--HEAPVYSVCPH 506 (1131)
Q Consensus 434 ~vwd~~~~----~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~--h~~~v~~~~~~ 506 (1131)
.++++... ..+..... ....++|++++-. .+. ++++.+ +.|.+|+ ...+.+..... ....+.++...
T Consensus 65 ~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~g--~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 65 LVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAVG--NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEET--TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred EEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEeec--CEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 99999884 22333322 3357889999877 343 344443 7899999 44441332222 23356666543
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCce-eE--EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGS-RV--DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
+++++.|...+.+.++.++.... .. .......+++++.|-++++.++.+.. +|.+.++...
T Consensus 139 ----~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~ 202 (321)
T PF03178_consen 139 ----KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYN 202 (321)
T ss_dssp ----TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-
T ss_pred ----ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEEC
Confidence 25899998888888886654333 22 22334557899999877776666643 7888887654
No 380
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.05 E-value=0.16 Score=60.79 Aligned_cols=93 Identities=10% Similarity=0.139 Sum_probs=65.4
Q ss_pred CCceEEEEeCCCCeeeEEEecccCCceEEEEEeCC-------CCEEEEEEcCCcEEEEEcCCCe--EEEE-EeccCCCCC
Q 001178 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT-------RNRILAAGEDNQIKFWDMDNVN--MLTS-TEAEGGLPS 634 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~-------~~~l~~~~~dg~i~iwd~~~~~--~~~~-~~~~~~~~~ 634 (1131)
....|+-.|+..|+.+..+..+...++. .+.|+ ....+.|-.++.+..||.+-.. ++.. .........
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 3678999999999999999987764444 34443 2345677788899999988632 2211 111122235
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 635 LPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 635 i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
..|++-+.+| ++|+|+.+|.||+||
T Consensus 580 Fs~~aTt~~G-~iavgs~~G~IRLyd 604 (794)
T PF08553_consen 580 FSCFATTEDG-YIAVGSNKGDIRLYD 604 (794)
T ss_pred ceEEEecCCc-eEEEEeCCCcEEeec
Confidence 6777777766 689999999999998
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.04 Score=60.25 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=102.7
Q ss_pred CcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCE--E-----EEEeCCCcEEEEEcCCCceeeeeeeec
Q 001178 887 NNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNI--L-----VSSGSDAQLIFWNTDTWEKRKSIAIQL 959 (1131)
Q Consensus 887 ~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~--l-----~s~~~Dg~v~lwd~~~~~~~~~~~~~~ 959 (1131)
+.++.++.....++-.|++.|+.+..++-|.. |+-+.+.|+.+. | +.|=.|..|.-||..-...-.....+.
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 34555666667788899999999999998877 888888887532 2 234457789999987432211111222
Q ss_pred CCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 960 ~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
..-.......+.+-..+|..++.+.+|.||+||- .+..-++..+.. ..+|..+..+.||++|++.+ +.++.+.+..
T Consensus 425 kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgL--G~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGL--GDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccccc--CCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 2222224566777777887666677999999998 555555444332 78999999999999998776 7777777754
No 382
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.96 E-value=0.3 Score=52.59 Aligned_cols=225 Identities=14% Similarity=0.118 Sum_probs=124.2
Q ss_pred cCCCCEEEEEeCCeEEEEECCC-ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEee-------
Q 001178 842 SKNDSYVMSAGGGKVSLFNMMN-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL------- 913 (1131)
Q Consensus 842 s~dg~~la~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~------- 913 (1131)
...++.|+.|.++.|.++++.. ........ ...|..+...| .-+.+++- .|+.++++++..-......
T Consensus 4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--~~~I~ql~vl~-~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRILK--LSSITQLSVLP-ELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred ccCCCEEEEEECCCEEEEEecCCccceeEee--cceEEEEEEec-ccCEEEEE-cCCccEEEEchhhccccccccccccc
Confidence 3567888888854499999933 33333332 23399999999 44444433 3599999998764333210
Q ss_pred -------cccccCeeEEE--EccCCCEEEEEeCCCcEEEEEcCCCcee---eeeeeecCCCCCCCCceEEEEcCCCcEEE
Q 001178 914 -------KGHQKHITGLA--FSTNLNILVSSGSDAQLIFWNTDTWEKR---KSIAIQLPAGKLPVGETRVQFHSDQVRLL 981 (1131)
Q Consensus 914 -------~~h~~~V~~l~--~s~dg~~l~s~~~Dg~v~lwd~~~~~~~---~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 981 (1131)
......+...+ -...+...+.+...+.|.+|........ ....+.. +..+..++|. +..++
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-----p~~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-----PDPPSSIAFL--GNKIC 152 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-----CCCcEEEEEe--CCEEE
Confidence 11222344444 1123333344444558888888763211 1112222 2678888888 66788
Q ss_pred EEeCCeEEEEeCCCcccceeeecCCC---------CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceee--EecCC
Q 001178 982 VNHETQLAIYDGSKMECIRQWVPQDV---------LSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC--RIAPS 1050 (1131)
Q Consensus 982 ~~~d~~i~vwd~~~~~~~~~~~~~~~---------~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~ 1050 (1131)
++..+...+.|+.++.....+..... ...++..+... ++.+|++- |..-...|. .|+... .+.-
T Consensus 153 v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W- 227 (275)
T PF00780_consen 153 VGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQW- 227 (275)
T ss_pred EEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEc-
Confidence 88888899999997766544422211 12344444443 56777763 333333343 344322 1111
Q ss_pred ccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCcc
Q 001178 1051 AYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETER 1098 (1131)
Q Consensus 1051 ~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~ 1098 (1131)
. . .+..+.+.. + +|+..+. +.|-||++.+++-
T Consensus 228 ~---------~---~p~~~~~~~--p-yli~~~~-~~iEV~~~~~~~l 259 (275)
T PF00780_consen 228 S---------S---APQSVAYSS--P-YLIAFSS-NSIEVRSLETGEL 259 (275)
T ss_pred C---------C---chhEEEEEC--C-EEEEECC-CEEEEEECcCCcE
Confidence 0 1 122344433 2 5655555 5599999999863
No 383
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.92 E-value=0.68 Score=51.59 Aligned_cols=84 Identities=12% Similarity=0.207 Sum_probs=61.0
Q ss_pred CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCC----------------C-E-
Q 001178 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR----------------N-R- 602 (1131)
Q Consensus 541 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~----------------~-~- 602 (1131)
...+.++..+|++++.++. |.-|+|.++|+.++..++..+|..+..+.-+.....+ . +
T Consensus 307 ~R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3467899999998877775 3489999999999999999988876544433222211 1 2
Q ss_pred EEEEEcCCcEEEEEcCCCeEEEEEec
Q 001178 603 ILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 603 l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
++-+-.-|.|.||++.+|..+..+..
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEe
Confidence 22356789999999999988777654
No 384
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.84 E-value=0.0028 Score=43.55 Aligned_cols=39 Identities=33% Similarity=0.609 Sum_probs=34.5
Q ss_pred ceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEE
Q 001178 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945 (1131)
Q Consensus 907 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd 945 (1131)
+++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 385
>PHA02713 hypothetical protein; Provisional
Probab=96.83 E-value=0.06 Score=63.87 Aligned_cols=226 Identities=9% Similarity=0.054 Sum_probs=114.7
Q ss_pred eEEEEECCCceeEEEEeCCCCCe-eEEEEeCCCCcEEEEEeCC------CcEEEEEeecceeE--EeecccccCeeEEEE
Q 001178 855 KVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMED------STIQIYNVRVDEVK--TKLKGHQKHITGLAF 925 (1131)
Q Consensus 855 ~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~d------g~I~iwd~~~~~~~--~~~~~h~~~V~~l~~ 925 (1131)
.+..||..+.+-...-.-+.... .+++. - ++.++++|+.+ ..+..||..+.+-. ..+........ ..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~--~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS--LA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee--EE
Confidence 46678877654322111111111 22233 2 67788888854 34778887765422 22221111112 22
Q ss_pred ccCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-C--------------
Q 001178 926 STNLNILVSSGSDA-----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-E-------------- 985 (1131)
Q Consensus 926 s~dg~~l~s~~~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d-------------- 985 (1131)
.-+|+..+.||.++ .+..||..+.+-........+.. ....+ .-+|+..+.|+ +
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~----~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS----SYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc----cccEE--EECCEEEEEeCCCcccccccccccccc
Confidence 33678888888764 47889988754322222111111 11112 22566555543 2
Q ss_pred ---------CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC------CcEEEEECCC-CceeeEecC
Q 001178 986 ---------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD------GSIGVFDADS-LRLRCRIAP 1049 (1131)
Q Consensus 986 ---------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d------g~i~vwd~~~-~~~~~~~~~ 1049 (1131)
..+..||..+.+-...-... .......+..-+|++.+.|+.+ ..+..||.++ .+-. .+..
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~---~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~-~~~~ 498 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFW---TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE-LITT 498 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCC---cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee-Eccc
Confidence 24778888765432211111 1111112223467777777754 2467899887 3322 2221
Q ss_pred CccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCC--cEEEEecCCCccccccccCCCC
Q 001178 1050 SAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG--SVKVIEPSETERKWGVAVPVDN 1108 (1131)
Q Consensus 1050 ~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg--~v~iW~~~~~~~~w~~~~p~~~ 1108 (1131)
++... ....+.+. ++.+.++||.|| ++-.||+.+.+ |...+|--.
T Consensus 499 ---m~~~r-----~~~~~~~~----~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~ 545 (557)
T PHA02713 499 ---TESRL-----SALHTILH----DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHS 545 (557)
T ss_pred ---cCccc-----ccceeEEE----CCEEEEEeeecceeehhhcCccccc--ccchhhhcC
Confidence 11110 01111222 678999999999 77788888777 998887653
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.82 E-value=0.33 Score=49.76 Aligned_cols=203 Identities=14% Similarity=0.173 Sum_probs=119.4
Q ss_pred CCCeeEEEecCCCCEEEEEe-CC--eEEEEECCCceeEEEEeCCCC-CeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce
Q 001178 833 EDVVPCVALSKNDSYVMSAG-GG--KVSLFNMMNFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~ 908 (1131)
......+.|..+|.++-+.+ -| .|+.+|+.+++......-+.. ---.++.. ++++....-.++...+||..+-+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 33455788878888777776 34 599999999998877654332 22344554 45666677788999999999998
Q ss_pred eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeE
Q 001178 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQL 988 (1131)
Q Consensus 909 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i 988 (1131)
.+..+.- .+.=+.++ .|++.|+.......+.++|.++.+.....
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i--------------------------------- 165 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI--------------------------------- 165 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE---------------------------------
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEE---------------------------------
Confidence 8888763 35667777 46777777766778999998874432221
Q ss_pred EEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCC--CCCCcccc
Q 001178 989 AIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASP--NSSQTVFP 1066 (1131)
Q Consensus 989 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~ 1066 (1131)
.|.+ .+..+ ..++.+-+- +|...|=.=....|...|..+|+....+......+.... .......+
T Consensus 166 ~V~~--~g~pv----------~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dV 232 (264)
T PF05096_consen 166 QVTD--NGRPV----------SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDV 232 (264)
T ss_dssp E-EE--TTEE-------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-
T ss_pred EEEE--CCEEC----------CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCe
Confidence 1111 11111 234444443 555555555667788888888888887765443321100 00011222
Q ss_pred E-EEEEcCCCCCeEEEEecCC
Q 001178 1067 L-VVTSHPQEPNQLAVGLTDG 1086 (1131)
Q Consensus 1067 ~-~v~~~p~~~~~l~s~~~Dg 1086 (1131)
+ .|+|.|..+.+++||=.=-
T Consensus 233 LNGIAyd~~~~~l~vTGK~Wp 253 (264)
T PF05096_consen 233 LNGIAYDPETDRLFVTGKLWP 253 (264)
T ss_dssp EEEEEEETTTTEEEEEETT-S
T ss_pred eEeEeEeCCCCEEEEEeCCCC
Confidence 2 5999998888888875433
No 387
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0055 Score=68.17 Aligned_cols=94 Identities=11% Similarity=0.130 Sum_probs=77.1
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCee-EEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 001178 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT-GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK 953 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~-~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~ 953 (1131)
..+.-+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577889999 88999999999999999988 677788887888888 99999999999999999999999999987655
Q ss_pred eeeeecCCCCCCCCceEEEEcC
Q 001178 954 SIAIQLPAGKLPVGETRVQFHS 975 (1131)
Q Consensus 954 ~~~~~~~~~~~~~~v~~v~~s~ 975 (1131)
..... ....+..+.|++
T Consensus 99 ~~~~s-----~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFS-----VETDISKGIWDR 115 (665)
T ss_pred ccccc-----cccchheeeccc
Confidence 43211 125667777763
No 388
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.64 E-value=1.5 Score=48.31 Aligned_cols=113 Identities=24% Similarity=0.263 Sum_probs=60.1
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC----CCEE
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD----GNFI 424 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd----g~~l 424 (1131)
..++|+|.|||+ +++ +...|.|++++ ..+.... .+ -++ ..+..........++++|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v-~e~~G~i~~~~-~~g~~~~--~v--~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLV-AERSGRIWVVD-KDGSLKT--PV--ADL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEE-EETTTEEEEEE-TTTEECE--EE--EE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEE-EeCCceEEEEe-CCCcCcc--ee--ccc--------ccccccccCCcccceeccccCCCCEEE
Confidence 468999999997 555 45699999999 4444311 00 000 0134455678999999995 4444
Q ss_pred EEEeCC--------CeEEEEEecCCC-ccc---ee-eeeec---CcCCeeEEEEecCCCceEEEEEcCCC
Q 001178 425 GVAFTK--------HLIHLYTYQGSN-DLC---QS-LEIDA---HVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1131)
Q Consensus 425 as~~~d--------~~i~vwd~~~~~-~~~---~~-~~~~~---h~~~V~~l~~s~d~~~~~l~s~s~d~ 478 (1131)
++.+.. ..|.-|.+..+. .+. .+ ..+.. ....-..|+|.|||. +.++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 433321 245556665441 111 11 11121 233457799999996 555555443
No 389
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.61 E-value=1.7 Score=48.60 Aligned_cols=285 Identities=12% Similarity=0.114 Sum_probs=151.7
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEec-----CCCCEEEEEeC
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS-----KNDSYVMSAGG 853 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s-----~dg~~la~~~d 853 (1131)
...+++|+-.|.++||+.......+..-.. .. .-..+|..+..- .+...||+-.-
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lll----------------E~----~l~~PILqv~~G~F~s~~~~~~LaVLhP 96 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLL----------------ET----QLKDPILQVECGKFVSGSEDLQLAVLHP 96 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEE----------------EE----ecCCcEEEEEeccccCCCCcceEEEecC
Confidence 467889999999999987554433321111 11 234555555542 13446666667
Q ss_pred CeEEEEECCC--ce-------eEEEEeCCCCC--eeEEEEeC----CCCcEEEEEeCCCcEEEEEeecceeEEeeccccc
Q 001178 854 GKVSLFNMMN--FK-------VMTTFMSPPPA--STFLAFHP----QDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQK 918 (1131)
Q Consensus 854 g~i~vwd~~~--~~-------~~~~~~~~~~~--i~~l~~s~----~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~ 918 (1131)
.++.||.+.. +. .+..+..|.-. ...+++-| .+..+|.+-+-||.+.+|+-+.-.....+.+ .-
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~l 175 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FL 175 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CC
Confidence 7888887631 11 12222223222 22233322 1357899999999999999765544444443 22
Q ss_pred CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee-------------------eeeeeecCCCCCCCCceEEEEcCCCcE
Q 001178 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR-------------------KSIAIQLPAGKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~-------------------~~~~~~~~~~~~~~~v~~v~~s~d~~~ 979 (1131)
--..+.|.+.-..+++++.+..+.-|....-... .........+...-.+..+.++.....
T Consensus 176 lPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~ 255 (418)
T PF14727_consen 176 LPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESD 255 (418)
T ss_pred CCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCce
Confidence 2344788888888999999888888865321000 000001111111112333334333344
Q ss_pred EEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEc----cCCC---EEEEEecCCcEEEEECCCCceeeEecCCcc
Q 001178 980 LLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYS----CNSQ---LIYATFTDGSIGVFDADSLRLRCRIAPSAY 1052 (1131)
Q Consensus 980 l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s----~dg~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 1052 (1131)
+++-....+.+.+.. |......+-. -.+.....|. .++. .+++++.++.+.||.=.+..-.+++.
T Consensus 256 IvvLger~Lf~l~~~-G~l~~~krLd---~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~---- 327 (418)
T PF14727_consen 256 IVVLGERSLFCLKDN-GSLRFQKRLD---YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP---- 327 (418)
T ss_pred EEEEecceEEEEcCC-CeEEEEEecC---CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC----
Confidence 444455566665553 3332222221 1122111121 2322 57788889999999744333333321
Q ss_pred ccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCccccc
Q 001178 1053 MSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWG 1101 (1131)
Q Consensus 1053 ~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w~ 1101 (1131)
..+| .+.++..+.-+..+++-+.+|.+.+-=+-+++..-.
T Consensus 328 --------~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~ 367 (418)
T PF14727_consen 328 --------HVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQ 367 (418)
T ss_pred --------CCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCcccc
Confidence 1112 234554454567999999999998877766665443
No 390
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.57 E-value=0.12 Score=44.79 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=65.4
Q ss_pred EEEEEEec---CCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEE
Q 001178 350 VVSMDFHP---FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1131)
Q Consensus 350 V~~~~fsp---dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 426 (1131)
|+++++.. ||..-|++|+.|..|+||+=.. .+. --...+.|++++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~--------------------Ei~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA--------------------EITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE--------------------EEecccceEEEEEcCC-CEEEE
Confidence 56666654 6656688999999999998542 221 1123567888887776 56888
Q ss_pred EeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEec---CCCceEEEEEcCCCcEE
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY---PNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~---d~~~~~l~s~s~d~~i~ 481 (1131)
+..+|+|-+|+-... +.. ... ...+.++++.. ||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R--lWR---iKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR--LWR---IKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce--eee---ecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999986431 221 221 22366665543 3433 577877777653
No 391
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.01 Score=66.20 Aligned_cols=92 Identities=15% Similarity=0.260 Sum_probs=77.2
Q ss_pred CCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCee-EEEEeCCCCcEEEEEeCCCcEEEEEeecceeE
Q 001178 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPAST-FLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK 910 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~ 910 (1131)
...+..+.|+|.-..+|.+. +|.|.+..+. .+.+.++..|...++ +++|.| ||++||+|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 55678899999999999998 8999999988 888888887777777 999999 8999999999999999999998766
Q ss_pred Eee-cccccCeeEEEEc
Q 001178 911 TKL-KGHQKHITGLAFS 926 (1131)
Q Consensus 911 ~~~-~~h~~~V~~l~~s 926 (1131)
... ..-..+|+++-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 552 2234567777775
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.53 E-value=0.78 Score=48.20 Aligned_cols=151 Identities=15% Similarity=0.108 Sum_probs=90.3
Q ss_pred CeeEEEEeCCCCcEEEEEe-CCCcEEEEEeecceeEEe-ecccccCeeEEEEccCCCEEEEEeCCCcEEEEE-cCCCcee
Q 001178 876 ASTFLAFHPQDNNIIAIGM-EDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN-TDTWEKR 952 (1131)
Q Consensus 876 ~i~~l~~s~~~~~~la~g~-~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd-~~~~~~~ 952 (1131)
.+.+.++++ ++..+|... .++.-.||-...+..... +.+ ..++...|++++...+....+...+++. ...++.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~- 100 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG- 100 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc-
Confidence 688999999 666555444 333334444333332222 233 3788999999988877777777777774 223222
Q ss_pred eeeeeecCCCCCCCCceEEEEcCCCcEEEEEe----CCeEEEEeCC---Cc---ccceeeecCCCCCCCeEEEEEccCCC
Q 001178 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH----ETQLAIYDGS---KM---ECIRQWVPQDVLSSPISSAAYSCNSQ 1022 (1131)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----d~~i~vwd~~---~~---~~~~~~~~~~~~~~~v~~i~~s~dg~ 1022 (1131)
........... ..|..+.+||||..++.-. ++.|.+--+. .+ ...............+++++|.+++.
T Consensus 101 ~~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 101 EPVEVDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred eeEEecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 12222222211 2799999999999999743 6777776543 23 11111111111246899999999999
Q ss_pred EEEEEecCCc
Q 001178 1023 LIYATFTDGS 1032 (1131)
Q Consensus 1023 ~l~s~~~dg~ 1032 (1131)
+++.+...+.
T Consensus 179 L~V~~~~~~~ 188 (253)
T PF10647_consen 179 LVVLGRSAGG 188 (253)
T ss_pred EEEEeCCCCC
Confidence 8887775443
No 393
>PRK13684 Ycf48-like protein; Provisional
Probab=96.45 E-value=1.5 Score=48.28 Aligned_cols=157 Identities=10% Similarity=0.076 Sum_probs=92.5
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCCcEEE-EEeecceeE-EeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 001178 874 PPASTFLAFHPQDNNIIAIGMEDSTIQI-YNVRVDEVK-TKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEK 951 (1131)
Q Consensus 874 ~~~i~~l~~s~~~~~~la~g~~dg~I~i-wd~~~~~~~-~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~ 951 (1131)
...+..+.+.| ++.+++++ ..|.+.. ++ ..++.- .....-...++++.+.++++.++. +..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 45688899999 77777655 4555442 22 222211 122233467899999999887665 4567654323333321
Q ss_pred eeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001178 952 RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG 1031 (1131)
Q Consensus 952 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg 1031 (1131)
-.. ...+.......+..+.+.+++..++++.+|.+. ...+.++...............+.+.|..+++.+++| ..|
T Consensus 248 W~~--~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G 323 (334)
T PRK13684 248 WSK--PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRG 323 (334)
T ss_pred ccc--ccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCc
Confidence 111 111111122456788999999988888888665 3455555544433211113468888888888777765 488
Q ss_pred cEEEEEC
Q 001178 1032 SIGVFDA 1038 (1131)
Q Consensus 1032 ~i~vwd~ 1038 (1131)
.|..|+-
T Consensus 324 ~il~~~~ 330 (334)
T PRK13684 324 VLLRYVG 330 (334)
T ss_pred eEEEecC
Confidence 8888763
No 394
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.44 E-value=0.48 Score=49.79 Aligned_cols=148 Identities=14% Similarity=0.073 Sum_probs=90.8
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEE-eeccee-
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN-VRVDEV- 909 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd-~~~~~~- 909 (1131)
..+.+.++|+||+.+|... ++.-.||-...+....... ....++...|++ ++.+.+....+...+++. ..+++.
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3678999999999888766 5443444333333333322 234788889999 677777777777777774 233322
Q ss_pred -EEe-ecccccCeeEEEEccCCCEEEEEe---CCCcEEEEEcCCCcee----eeeeeecCCCCCCCCceEEEEcCCCcEE
Q 001178 910 -KTK-LKGHQKHITGLAFSTNLNILVSSG---SDAQLIFWNTDTWEKR----KSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1131)
Q Consensus 910 -~~~-~~~h~~~V~~l~~s~dg~~l~s~~---~Dg~v~lwd~~~~~~~----~~~~~~~~~~~~~~~v~~v~~s~d~~~l 980 (1131)
+.. ...-.+.|+++.+||||..+|... .++.|.+=-+...... ......... .....+..++|.+++.++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeecCCCEEE
Confidence 111 111122899999999999887765 3567777655432221 111111111 112678899999999988
Q ss_pred EEEe
Q 001178 981 LVNH 984 (1131)
Q Consensus 981 ~~~~ 984 (1131)
+.+.
T Consensus 181 V~~~ 184 (253)
T PF10647_consen 181 VLGR 184 (253)
T ss_pred EEeC
Confidence 8753
No 395
>PRK10115 protease 2; Provisional
Probab=96.42 E-value=3.6 Score=50.27 Aligned_cols=243 Identities=9% Similarity=0.044 Sum_probs=117.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCC-----CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC-----Cc
Q 001178 410 ISVSRVAWSPDGNFIGVAFTK-----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-----KL 479 (1131)
Q Consensus 410 ~~V~~~~~spdg~~las~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d-----~~ 479 (1131)
-.+..+.|||||++||.+... ..|++.|+.+|..+.. .+.+ . -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 357788999999999877432 3688999988764321 1221 1 156999999985 34443322 35
Q ss_pred EEEEe-CCC--ceeEEecCCccCeEEEeecccCCccEEEEEe---cCCeEEEEeCCC--CceeEEecCCCceEEEEEEcc
Q 001178 480 IRVWD-LSG--RKLFQFEGHEAPVYSVCPHQKENIHFIFSTA---VDGKIKAWLYDN--VGSRVDYDAPGLWCTTMLYSA 551 (1131)
Q Consensus 480 i~iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~~wd~~~--~~~~~~~~~~~~~v~~~~~s~ 551 (1131)
|+.|+ -++ +-...+........ +....+.++.+++..+ .++.+.+++.+. ......+.........+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~- 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H- 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e-
Confidence 66677 444 22223333233333 2222233555555443 345788888532 222222222222222222 2
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCC-CeeeEEEecc-cCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC-CeEEEEEec
Q 001178 552 DGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYIGF-RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN-VNMLTSTEA 628 (1131)
Q Consensus 552 ~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~ 628 (1131)
.+..+...+........|...++.. ++. ..+..+ ....+..+.+. .+..+++...+|.-+++-+.. +..+..+..
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~ 355 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAF 355 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecC
Confidence 2344444432222344566666652 332 333333 33367777776 234555566677655554432 223333331
Q ss_pred cCCCCCcceEEEc--CCCC-EEEEEEC---CCcEEEEecCCC
Q 001178 629 EGGLPSLPRLRFN--KEGN-LLVVTTA---DQGIKILANADG 664 (1131)
Q Consensus 629 ~~~~~~i~~v~~s--p~~~-~l~~~~~---dg~i~iw~~~~~ 664 (1131)
... ..+..+.++ +++. ++++.+. -+.+..+|..++
T Consensus 356 ~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 356 DDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 111 012222333 3333 3333332 356777776654
No 396
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.41 E-value=0.19 Score=43.69 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=66.0
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCC
Q 001178 412 VSRVAWSP---DG-NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG 487 (1131)
Q Consensus 412 V~~~~~sp---dg-~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 487 (1131)
|++|++.. || +.|++|+.|..|++|+-+. .+ .++. -...|++++-...++ ++.+-.+|+|-+|+...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~---~Ei~-e~~~v~~L~~~~~~~---F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IV---AEIT-ETDKVTSLCSLGGGR---FAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EE---EEEe-cccceEEEEEcCCCE---EEEEecCCEEEEEeCcc
Confidence 66777665 33 4899999999999998543 22 2333 345688888777754 89999999999998533
Q ss_pred ceeEEecCCccCeEEEee-cccCCc-cEEEEEecCCeEE
Q 001178 488 RKLFQFEGHEAPVYSVCP-HQKENI-HFIFSTAVDGKIK 524 (1131)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~-~~~~~~-~~l~s~s~dg~i~ 524 (1131)
+. ...+.... +.++++ ....+| .-|++|-.+|.|-
T Consensus 73 Rl-WRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RL-WRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ee-eeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33 33332222 555543 333333 3577887788764
No 397
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.29 E-value=1.7 Score=47.92 Aligned_cols=243 Identities=14% Similarity=0.096 Sum_probs=116.7
Q ss_pred CeeEEEecCCCCEEEEEeCCeEEEEECCCcee---EEEEe----CCCCCeeEEEEeCC---CCcEEEEEeCC--------
Q 001178 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKV---MTTFM----SPPPASTFLAFHPQ---DNNIIAIGMED-------- 896 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~---~~~~~----~~~~~i~~l~~s~~---~~~~la~g~~d-------- 896 (1131)
..+.|+|.|||+++++-..|.|++++ .++.. +..+. ........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999988877789999999 44443 22221 23346789999993 24544444422
Q ss_pred CcEEEEEeecc-------eeE-Eeecc---cccCeeEEEEccCCCEEEEEeCCCc-------------EEEEEcCCCcee
Q 001178 897 STIQIYNVRVD-------EVK-TKLKG---HQKHITGLAFSTNLNILVSSGSDAQ-------------LIFWNTDTWEKR 952 (1131)
Q Consensus 897 g~I~iwd~~~~-------~~~-~~~~~---h~~~V~~l~~s~dg~~l~s~~~Dg~-------------v~lwd~~~~~~~ 952 (1131)
..|.-|....+ +.+ ..+.. ....-..|+|.|||.+.++.+..+. |.-.+... ...
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCC
Confidence 23444444433 111 12222 2223466999999988777765432 22222221 000
Q ss_pred eeeeeecCCCCC-------CCCceEEEEcCC-CcEEEE--EeCCeEEEEeCCCcccc----------------e------
Q 001178 953 KSIAIQLPAGKL-------PVGETRVQFHSD-QVRLLV--NHETQLAIYDGSKMECI----------------R------ 1000 (1131)
Q Consensus 953 ~~~~~~~~~~~~-------~~~v~~v~~s~d-~~~l~~--~~d~~i~vwd~~~~~~~----------------~------ 1000 (1131)
...+..-..... -.....++|.|. |.+.++ +.+..=.|.-+..|.-. .
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 000000000000 023457899999 666655 22332222222221100 0
Q ss_pred ----eeecCCCCCCCeEEEEEcc-------CCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEE
Q 001178 1001 ----QWVPQDVLSSPISSAAYSC-------NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVV 1069 (1131)
Q Consensus 1001 ----~~~~~~~~~~~v~~i~~s~-------dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 1069 (1131)
-... ..+...+..+.|-. .|.++++.-..+.|....+..+.......... ..-.-.++.+
T Consensus 241 ~~~~P~~~-~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~r~~~v 311 (331)
T PF07995_consen 241 GFVPPVFA-YPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL--------GGFGGRPRDV 311 (331)
T ss_dssp TS---SEE-ETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC--------TTSSS-EEEE
T ss_pred CcCcccee-ecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc--------ccCCCCceEE
Confidence 0000 01135677777764 44566655556677777776443322221111 0111235578
Q ss_pred EEcCCCCCeEEEEecCCcEE
Q 001178 1070 TSHPQEPNQLAVGLTDGSVK 1089 (1131)
Q Consensus 1070 ~~~p~~~~~l~s~~~Dg~v~ 1089 (1131)
.+.| |+.++++...+|.|.
T Consensus 312 ~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEET-TSEEEEEE-TTTTEE
T ss_pred EEcC-CCeEEEEECCCCeEe
Confidence 8888 677888888888763
No 398
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.097 Score=57.36 Aligned_cols=143 Identities=14% Similarity=0.112 Sum_probs=98.1
Q ss_pred CCCEE-EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEE-----EEEcCCCcEEEEe--CCCc-ee
Q 001178 420 DGNFI-GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCI-----VTCGDDKLIRVWD--LSGR-KL 490 (1131)
Q Consensus 420 dg~~l-as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l-----~s~s~d~~i~iwd--~~~~-~~ 490 (1131)
+.++| .++.....++-.|++.|+.+. ++.-|.. |+-+.+.|+.+.-.+ +.|-.|+.|.-|| ..+. .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 44444 344555678888999998665 4555555 888888887642112 3355688899999 5555 33
Q ss_pred EEecCCc----cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCC
Q 001178 491 FQFEGHE----APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGD 566 (1131)
Q Consensus 491 ~~~~~h~----~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 566 (1131)
..-.+|+ ..-.|.+- ..+ .+|+.||.+|.|++||--.......+.+-+.+|..+..+.||++++..+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~aT--T~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFAT--TES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceeee--cCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 3333332 23344443 344 4899999999999999755555567788888999999999999998876 6
Q ss_pred ceEEEEeC
Q 001178 567 SHLVEWNE 574 (1131)
Q Consensus 567 ~~i~iwd~ 574 (1131)
..+.+.+.
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 67777764
No 399
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.21 E-value=0.74 Score=50.41 Aligned_cols=237 Identities=13% Similarity=0.092 Sum_probs=108.6
Q ss_pred CCceEEEee-ecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe---C
Q 001178 778 SGIGILALW-SNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG---G 853 (1131)
Q Consensus 778 ~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~---d 853 (1131)
+.++|++.+ ..+.|.+.|+.+....|.-..+... ..+... ..-.....+.--|+|+.++++- +
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~---------~ev~~k----~g~s~PHT~Hclp~G~imIS~lGd~~ 152 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEP---------EEVFEK----TGLSRPHTVHCLPDGRIMISALGDAD 152 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-H---------HHHHHH----H-EEEEEEEEE-SS--EEEEEEEETT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCH---------HHHHhh----cCCCCCceeeecCCccEEEEeccCCC
Confidence 456677766 4688888888765444332211100 000000 0001122233347898888762 2
Q ss_pred ----CeEEEEECCCceeEEEEeCCCC---CeeEEEEeCCCCcEEEEEeC--------------------CCcEEEEEeec
Q 001178 854 ----GKVSLFNMMNFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGME--------------------DSTIQIYNVRV 906 (1131)
Q Consensus 854 ----g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~~la~g~~--------------------dg~I~iwd~~~ 906 (1131)
|.+.++|-++.+.+........ .-..+-|.| ..+.+++... ..++.+||+.+
T Consensus 153 G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~ 231 (461)
T PF05694_consen 153 GNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST 231 (461)
T ss_dssp S-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT
T ss_pred CCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC
Confidence 4599999999888887764322 244566777 6666766542 34699999999
Q ss_pred ceeEEeecccc--cCeeEEEEccC--CCE-EEEEeCCCcEEEEEc-CCCceeeeeeeecCCCCC---------------C
Q 001178 907 DEVKTKLKGHQ--KHITGLAFSTN--LNI-LVSSGSDAQLIFWNT-DTWEKRKSIAIQLPAGKL---------------P 965 (1131)
Q Consensus 907 ~~~~~~~~~h~--~~V~~l~~s~d--g~~-l~s~~~Dg~v~lwd~-~~~~~~~~~~~~~~~~~~---------------~ 965 (1131)
.+.++++.--. .....|.|..+ ..+ ++.+--..+|..|-- +.++-.....+.++.... +
T Consensus 232 r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P 311 (461)
T PF05694_consen 232 RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP 311 (461)
T ss_dssp TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC
Confidence 99998876432 23556777654 333 333333445544433 444433333444333210 2
Q ss_pred CCceEEEEcCCCcEEEEEe--CCeEEEEeCCCcccceee---ecC-------------CCCCCCeEEEEEccCCCEEEEE
Q 001178 966 VGETRVQFHSDQVRLLVNH--ETQLAIYDGSKMECIRQW---VPQ-------------DVLSSPISSAAYSCNSQLIYAT 1027 (1131)
Q Consensus 966 ~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~~~~~---~~~-------------~~~~~~v~~i~~s~dg~~l~s~ 1027 (1131)
.-++.|.+|.|.++|.++. .|.++.||+..-...+.. ... ....+...-+..|-||+.|.+.
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 4578999999999999985 999999999864333221 110 0012234668889999988876
Q ss_pred e
Q 001178 1028 F 1028 (1131)
Q Consensus 1028 ~ 1028 (1131)
.
T Consensus 392 n 392 (461)
T PF05694_consen 392 N 392 (461)
T ss_dssp -
T ss_pred e
Confidence 5
No 400
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.19 E-value=0.46 Score=56.30 Aligned_cols=237 Identities=14% Similarity=0.154 Sum_probs=127.9
Q ss_pred cCCCCEEEEEe-C------CeEEEEECCCceeEEEEeC-CCCCeeEEEEeCCCCcEEEEEeCC-C-----cEEEEEeecc
Q 001178 842 SKNDSYVMSAG-G------GKVSLFNMMNFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGMED-S-----TIQIYNVRVD 907 (1131)
Q Consensus 842 s~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~d-g-----~I~iwd~~~~ 907 (1131)
+..+..+++|+ . ..+..||..+++-.....- ....-.++++. ++.+.++|+.| | ++..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33455666665 3 3488899887643332221 12223445554 56889999999 3 5778887765
Q ss_pred eeE--EeecccccCeeEEEEccCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCCCCCceEE-EEcCCCcE
Q 001178 908 EVK--TKLKGHQKHITGLAFSTNLNILVSSGSDA-----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRV-QFHSDQVR 979 (1131)
Q Consensus 908 ~~~--~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v-~~s~d~~~ 979 (1131)
+=. ..+........... -+|...|+||.|| ++..||..+.+-........ ..... ...-+|+.
T Consensus 360 ~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-------~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-------RRSGHGVAVLGGKL 430 (571)
T ss_pred ceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-------ceeeeEEEEECCEE
Confidence 422 22222222222222 2688899999996 47778877754322221111 11111 22234555
Q ss_pred EEEEe-C------CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC-----cEEEEECCCCceeeEe
Q 001178 980 LLVNH-E------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG-----SIGVFDADSLRLRCRI 1047 (1131)
Q Consensus 980 l~~~~-d------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg-----~i~vwd~~~~~~~~~~ 1047 (1131)
.++|. + ..+..||..++.....-.-... .... . .-.-++.+.+.||.|+ +|..||..+.+-...
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-R~~~-g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v- 506 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-RSGF-G-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV- 506 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcccc-cccc-e-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEc-
Confidence 55532 2 4578899887654332211100 1111 1 2234788888888776 377788877654332
Q ss_pred cCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCC-----cEEEEecCCCccccccccCCC
Q 001178 1048 APSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG-----SVKVIEPSETERKWGVAVPVD 1107 (1131)
Q Consensus 1048 ~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg-----~v~iW~~~~~~~~w~~~~p~~ 1107 (1131)
..-. .+ .+.+. +.+ .++.+.++||.|| +|-.||..+.+ |....+..
T Consensus 507 ~~m~-~~------rs~~g-~~~----~~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~~~ 557 (571)
T KOG4441|consen 507 APMT-SP------RSAVG-VVV----LGGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTEPE 557 (571)
T ss_pred ccCc-cc------ccccc-EEE----ECCEEEEEecccCccccceeEEcCCCCCc--eeeCCCcc
Confidence 1111 11 00011 111 2678999999988 47778777766 98887744
No 401
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.17 E-value=0.014 Score=39.92 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=33.6
Q ss_pred ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001178 864 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1131)
Q Consensus 864 ~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd 903 (1131)
++++..+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355667777888999999999 778999999999999996
No 402
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.08 E-value=2.6 Score=45.09 Aligned_cols=151 Identities=18% Similarity=0.248 Sum_probs=81.2
Q ss_pred CCCCeeEEEecCCCCEEEEEeCCe-EEEEECCC--ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEe-ecc
Q 001178 832 AEDVVPCVALSKNDSYVMSAGGGK-VSLFNMMN--FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV-RVD 907 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~dg~-i~vwd~~~--~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~-~~~ 907 (1131)
....+..+..++||++++++..|. +.-||--. .+...+ ....+|..+.|.| ++.+.+++ ..|.|++=+. ...
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r--~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR--NSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc--CccceehhceecC-CCCEEEEe-CCcEEEEccCCCCc
Confidence 456688888999999999999766 45677542 333332 2457899999999 67766644 8888887762 122
Q ss_pred eeEEe----ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE
Q 001178 908 EVKTK----LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1131)
Q Consensus 908 ~~~~~----~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 983 (1131)
+.-.. +..-.-.+..++|.+++...|+++.. .+ +...+.++.=.... .....+.....+.|.++.+-++.|
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~---~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDR---VGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-G---GGTTSSS---EEEEEETTEEEEE-
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECc---cccCCCCceEEEEEcCCCceEEEC
Confidence 21111 11122347899999998877766554 33 44444443211111 111122568899999888999999
Q ss_pred eCCeEEEE
Q 001178 984 HETQLAIY 991 (1131)
Q Consensus 984 ~d~~i~vw 991 (1131)
.+|.|--|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 99987655
No 403
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.03 E-value=3.5 Score=46.22 Aligned_cols=278 Identities=11% Similarity=0.135 Sum_probs=145.0
Q ss_pred cCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-----CCCEEEEEeCCC
Q 001178 357 PFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-----DGNFIGVAFTKH 431 (1131)
Q Consensus 357 pdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-----dg~~las~~~d~ 431 (1131)
++++..+++|+..|.++||+...++...... ..-..-+.+|..++.-+ +...||+ =.-+
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~l---------------llE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~ 97 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDL---------------LLETQLKDPILQVECGKFVSGSEDLQLAV-LHPR 97 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccE---------------EEEEecCCcEEEEEeccccCCCCcceEEE-ecCC
Confidence 4455568999999999999996544221100 01123345677776542 2335555 4557
Q ss_pred eEEEEEecCCCcc------ceeeeeecCcC--CeeEEEEec----CCCceEEEEEcCCCcEEEEeCCCceeE-EecC--C
Q 001178 432 LIHLYTYQGSNDL------CQSLEIDAHVG--GVNDLAFSY----PNKQLCIVTCGDDKLIRVWDLSGRKLF-QFEG--H 496 (1131)
Q Consensus 432 ~i~vwd~~~~~~~------~~~~~~~~h~~--~V~~l~~s~----d~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~--h 496 (1131)
.+.||.+...... .....+..|.- ....++.-| .++. +++.=+.||.+.+++.+.-... .+.. .
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCCC
Confidence 7889988332111 11112233332 223333333 2233 7888999999999995444432 2322 3
Q ss_pred ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc-----------------------eeEEecCCCc--eEEEEEEcc
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-----------------------SRVDYDAPGL--WCTTMLYSA 551 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----------------------~~~~~~~~~~--~v~~~~~s~ 551 (1131)
.+|+ ++.+.. +.+++++.+..+..|...... ..+.+..... .|..+.++.
T Consensus 177 PgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~ 251 (418)
T PF14727_consen 177 PGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSS 251 (418)
T ss_pred CcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCC
Confidence 3443 343333 478888888888888642100 0011111111 233344443
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC----CC---CEEEEEEcCCcEEEEEcCCCeEEE
Q 001178 552 DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT----TR---NRILAAGEDNQIKFWDMDNVNMLT 624 (1131)
Q Consensus 552 ~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~----~~---~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1131)
....+++-+ ...+.+.+. +|.+....+- .-.+.....|.. ++ ..+++++.++.+.||.-.+ .+.
T Consensus 252 ~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~W 322 (418)
T PF14727_consen 252 SESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVW 322 (418)
T ss_pred CCceEEEEe-----cceEEEEcC-CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEE
Confidence 444454444 567777775 4654433322 211222222221 22 2588899999999987433 333
Q ss_pred EEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCc
Q 001178 625 STEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 625 ~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 665 (1131)
........-.+.-..|..-...+++-+.+|.+.+--+.+..
T Consensus 323 sA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 323 SAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred ecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 33222111012222233345678888899999998776653
No 404
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.98 E-value=1.2 Score=43.80 Aligned_cols=107 Identities=11% Similarity=0.117 Sum_probs=64.4
Q ss_pred EEEeecCCceEEEeee-cceeeEEee--cCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEE
Q 001178 772 RLLYTNSGIGILALWS-NGVQKLWKW--NRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV 848 (1131)
Q Consensus 772 ~l~~s~~g~~l~~~~~-dg~i~iw~~--~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 848 (1131)
.++|+.+.+.+....+ +-.+..||. +++.... .-.++++...+... ......+++..+|++.
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn--------r~~i~dlrk~~~~e-------~~~PDGm~ID~eG~L~ 226 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN--------RKVIFDLRKSQPFE-------SLEPDGMTIDTEGNLY 226 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccC--------cceeEEeccCCCcC-------CCCCCcceEccCCcEE
Confidence 4556656555555544 556666663 3322211 11334443332211 1122346667788866
Q ss_pred EEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEE
Q 001178 849 MSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 893 (1131)
Q Consensus 849 a~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g 893 (1131)
++.- .++|...|..+|+.+.+++.+...|++++|--.+-.++.+.
T Consensus 227 Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred EEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 6665 78999999999999999999999999999964222344443
No 405
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.83 E-value=1.6 Score=47.89 Aligned_cols=150 Identities=13% Similarity=0.085 Sum_probs=73.3
Q ss_pred CccEEEEEe-cCCeEEEEeCCCCcee----EEecC---C----CceEEEEEEccCCCEEEEEeec--CCCCceEEEEeCC
Q 001178 510 NIHFIFSTA-VDGKIKAWLYDNVGSR----VDYDA---P----GLWCTTMLYSADGSRLFSCGTS--KEGDSHLVEWNES 575 (1131)
Q Consensus 510 ~~~~l~s~s-~dg~i~~wd~~~~~~~----~~~~~---~----~~~v~~~~~s~~g~~l~~~~~~--~~~~~~i~iwd~~ 575 (1131)
+.++|+..+ ..++|++.|+.+.... ..+.. . -.....+..-|+|+.++++-.+ +++.|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666665 6789999998743221 12211 0 0123445556889888876433 3456789999988
Q ss_pred CCeeeEEEecccCC--ceEEEEEeCCCCEEEEEE--------------------cCCcEEEEEcCCCeEEEEEeccCCCC
Q 001178 576 EGALKRTYIGFRKK--SAGVVQFDTTRNRILAAG--------------------EDNQIKFWDMDNVNMLTSTEAEGGLP 633 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1131)
+.+........... .-....+.|..+.+++.. ...++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 88877776653321 233477888888888754 24679999999999999998764322
Q ss_pred CcceEEEc--CCCCEEEEEEC-CCcEEEE
Q 001178 634 SLPRLRFN--KEGNLLVVTTA-DQGIKIL 659 (1131)
Q Consensus 634 ~i~~v~~s--p~~~~l~~~~~-dg~i~iw 659 (1131)
...-+.|. |+..+-++++. ..+|..|
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEE
Confidence 23445554 44555444433 3344433
No 406
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.29 Score=58.57 Aligned_cols=181 Identities=15% Similarity=0.209 Sum_probs=102.3
Q ss_pred CCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEE---EeCCCCcEEEEEeCCCcEEEEEeecc
Q 001178 832 AEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLA---FHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~---~s~~~~~~la~g~~dg~I~iwd~~~~ 907 (1131)
...+|++++|+.||+.++.|- +|.|.+||+..++.++.+..+..+.+.+- +.. ++..+.++...|. +|.+.-.
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~lv~n 205 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKLVFN 205 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEEEec
Confidence 577899999999999999997 89999999999999998887666655543 344 4557778877776 5665422
Q ss_pred e-e--------EEeecccccCeeEEEEccCCCE---------EEEEeCCC-cEEEEEcCCCceeeeeeeecCCCCCCCCc
Q 001178 908 E-V--------KTKLKGHQKHITGLAFSTNLNI---------LVSSGSDA-QLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1131)
Q Consensus 908 ~-~--------~~~~~~h~~~V~~l~~s~dg~~---------l~s~~~Dg-~v~lwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1131)
+ + ...+.+-.++|.+..--|+... +++...-+ -|.++- .+......+.+.....-
T Consensus 206 k~~L~~~~~kskcl~sg~~g~Vis~s~i~~e~l~~~~v~hf~~v~L~p~~sIvt~fP------i~f~~q~pPa~v~~~~~ 279 (1206)
T KOG2079|consen 206 KALLNMNTDKSKCLLSGKNGEVISASPISDENLGSLLVSHFGFVSLVPLSSIVTLFP------IKFMYQKPPAGVVGSGS 279 (1206)
T ss_pred hhhhcccchHHHHhhcCCCCceEecccCCcchhhhhheeeeeEEEeecccceeeecc------eEEEEecCCCceecccc
Confidence 2 1 1112344566666554443211 11111111 111221 11111111112111222
Q ss_pred eEEEEcC------CCcEEEEEeCCeEEEEeCCCcccceee--ecCCCCCCCeEEEEEccCC
Q 001178 969 TRVQFHS------DQVRLLVNHETQLAIYDGSKMECIRQW--VPQDVLSSPISSAAYSCNS 1021 (1131)
Q Consensus 969 ~~v~~s~------d~~~l~~~~d~~i~vwd~~~~~~~~~~--~~~~~~~~~v~~i~~s~dg 1021 (1131)
....++. .+-.++++..+.+.++.+...+-..++ ..+....+.+.++.|-+..
T Consensus 280 ~s~~ins~~ts~e~~~~ia~s~nNkL~v~sI~~sn~~~ql~~~~~~efa~Silsi~W~~s~ 340 (1206)
T KOG2079|consen 280 HSKLINSDSTSVEEDVVIAASYNNKLVVKSIPNSNFYAQLQPRREGEFAGSILSIHWRRST 340 (1206)
T ss_pred ceeeeeccccccccceEEEEEeCCeEEEEEEecccceEEEeeccccccccchhheeeeccc
Confidence 2223322 244666778888888888754444333 2223336788888887554
No 407
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.76 E-value=0.033 Score=40.09 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=30.3
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcc
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRER 382 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~ 382 (1131)
....|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus 10 l~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 456799999999998 8999999999999999 4543
No 408
>PRK10115 protease 2; Provisional
Probab=95.68 E-value=7.7 Score=47.49 Aligned_cols=242 Identities=11% Similarity=0.035 Sum_probs=115.4
Q ss_pred cceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCE
Q 001178 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1131)
-.+..+.++|||++|+.+.+.+--.-+ .+.+.++.+|..+...+.. .-..++|++|++.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~-----------------~l~v~d~~tg~~l~~~i~~----~~~~~~w~~D~~~ 185 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQY-----------------GIRFRNLETGNWYPELLDN----VEPSFVWANDSWT 185 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEE-----------------EEEEEECCCCCCCCccccC----cceEEEEeeCCCE
Confidence 445678889999988877553222222 2234455555533322211 1145999999987
Q ss_pred EEEEe-C------CeEEEEECCCc--eeEEEEeCCCCCee-EEEEeCCCCcEEEEEeCC---CcEEEEEee--cceeEEe
Q 001178 848 VMSAG-G------GKVSLFNMMNF--KVMTTFMSPPPAST-FLAFHPQDNNIIAIGMED---STIQIYNVR--VDEVKTK 912 (1131)
Q Consensus 848 la~~~-d------g~i~vwd~~~~--~~~~~~~~~~~~i~-~l~~s~~~~~~la~g~~d---g~I~iwd~~--~~~~~~~ 912 (1131)
|+... + ..|..+++.++ +....+........ .+..+. ++++++..+.. +.+.+|+.. +++....
T Consensus 186 ~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 186 FYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 77654 2 25888899887 33444443333333 333343 56655544433 468888843 3332222
Q ss_pred ecccccCeeEEEEccCCCEEEEEeCC-C--cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE--EeCCe
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGSD-A--QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV--NHETQ 987 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~D-g--~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~--~~d~~ 987 (1131)
+..-.+....+. +..+.+++....+ . .|...++.... ....+. +. .....+..+.+..+ .|+. ..++.
T Consensus 265 ~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~--~~~~l~-~~-~~~~~i~~~~~~~~--~l~~~~~~~g~ 337 (686)
T PRK10115 265 LPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQ--QWEELI-PP-RENIMLEGFTLFTD--WLVVEERQRGL 337 (686)
T ss_pred EECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcc--cCeEEE-CC-CCCCEEEEEEEECC--EEEEEEEeCCE
Confidence 222222222222 2223333332221 2 33333443211 111111 11 11235667777733 4443 34554
Q ss_pred --EEEEeCCCcccceeee-cCCCCCCCeEEEEEc--cCCC-EEEEEe---cCCcEEEEECCCCc
Q 001178 988 --LAIYDGSKMECIRQWV-PQDVLSSPISSAAYS--CNSQ-LIYATF---TDGSIGVFDADSLR 1042 (1131)
Q Consensus 988 --i~vwd~~~~~~~~~~~-~~~~~~~~v~~i~~s--~dg~-~l~s~~---~dg~i~vwd~~~~~ 1042 (1131)
+++++..++ .+..+. .. ...+..+.++ +++. ++++.+ .-+.++.||+.+++
T Consensus 338 ~~l~~~~~~~~-~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 338 TSLRQINRKTR-EVIGIAFDD---PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEcCCCC-ceEEecCCC---CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 455555433 333332 11 1223334444 3443 444444 34789999988765
No 409
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.62 E-value=1.6 Score=43.12 Aligned_cols=137 Identities=11% Similarity=0.043 Sum_probs=77.7
Q ss_pred cCCeeEEEEecCCCceEEE-EEcCC--------CcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEE
Q 001178 454 VGGVNDLAFSYPNKQLCIV-TCGDD--------KLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIK 524 (1131)
Q Consensus 454 ~~~V~~l~~s~d~~~~~l~-s~s~d--------~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 524 (1131)
..+.++-..+|+|+ +++ +.+.- |.++.|-..+ .+..+...-+--+.++|.. ....+-++-+.+-.|.
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~~le~~~g~Ly~~~~~h-~v~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGDDLEPIGGELYSWLAGH-QVELIWNCVGISNGLAWDS-DAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccccccccccEEEEeccCC-CceeeehhccCCccccccc-cCcEEEEEccCceEEe
Confidence 34566777889999 332 22221 2223332111 1111222222334566752 2224445667777888
Q ss_pred EEeCCCC-------ceeEEecC----CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEE
Q 001178 525 AWLYDNV-------GSRVDYDA----PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGV 593 (1131)
Q Consensus 525 ~wd~~~~-------~~~~~~~~----~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~ 593 (1131)
-||++-. ..+..+.. .....-.+++..+|.+.+++-. .++|...|..+|+.+..+.-... .+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qits 258 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QITS 258 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceEE
Confidence 8884422 22222222 1112234566778888777765 78999999999999999887654 7899
Q ss_pred EEEeCC
Q 001178 594 VQFDTT 599 (1131)
Q Consensus 594 ~~~s~~ 599 (1131)
+||...
T Consensus 259 ccFgGk 264 (310)
T KOG4499|consen 259 CCFGGK 264 (310)
T ss_pred EEecCC
Confidence 998643
No 410
>PHA02713 hypothetical protein; Provisional
Probab=95.59 E-value=0.59 Score=55.56 Aligned_cols=185 Identities=15% Similarity=0.132 Sum_probs=95.4
Q ss_pred CCCCEEEEEe-C------CeEEEEECCCceeEE--EEeCCCCCeeEEEEeCCCCcEEEEEeCCC-----cEEEEEeecce
Q 001178 843 KNDSYVMSAG-G------GKVSLFNMMNFKVMT--TFMSPPPASTFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDE 908 (1131)
Q Consensus 843 ~dg~~la~~~-d------g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~~la~g~~dg-----~I~iwd~~~~~ 908 (1131)
-++...+.|+ + ..+..||..+..-.. .+....... +++ .- ++++.+.|+.++ ++..||..+.+
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VI-DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EE-CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 3666666665 3 247788887664321 111111112 222 22 678888898764 47889987653
Q ss_pred --eEEeecccccCeeEEEEccCCCEEEEEeCCC-----------------------cEEEEEcCCCceeeeeeeecCCCC
Q 001178 909 --VKTKLKGHQKHITGLAFSTNLNILVSSGSDA-----------------------QLIFWNTDTWEKRKSIAIQLPAGK 963 (1131)
Q Consensus 909 --~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg-----------------------~v~lwd~~~~~~~~~~~~~~~~~~ 963 (1131)
.+..+.........++ -+|+..+.||.++ .+..||..+.+-....... ...
T Consensus 379 W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r 454 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGT 454 (557)
T ss_pred EEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC--ccc
Confidence 2222222222122222 3678888887653 4777887775432222111 111
Q ss_pred CCCCceEEEEcCCCcEEEEEe-C------CeEEEEeCCC-ccc--ceeeecCCCCCCCeEEEEEccCCCEEEEEecCC--
Q 001178 964 LPVGETRVQFHSDQVRLLVNH-E------TQLAIYDGSK-MEC--IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG-- 1031 (1131)
Q Consensus 964 ~~~~v~~v~~s~d~~~l~~~~-d------~~i~vwd~~~-~~~--~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg-- 1031 (1131)
.-.+++. -+|+..++|. + ..+..||..+ .+- +..+... ......+++ +|++.++|+.|+
T Consensus 455 ---~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~---r~~~~~~~~--~~~iyv~Gg~~~~~ 525 (557)
T PHA02713 455 ---IRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR---LSALHTILH--DNTIMMLHCYESYM 525 (557)
T ss_pred ---ccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc---cccceeEEE--CCEEEEEeeeccee
Confidence 1112222 2344444442 2 2467899886 332 2222211 222222222 788999999888
Q ss_pred cEEEEECCCCce
Q 001178 1032 SIGVFDADSLRL 1043 (1131)
Q Consensus 1032 ~i~vwd~~~~~~ 1043 (1131)
.+..||..+.+-
T Consensus 526 ~~e~yd~~~~~W 537 (557)
T PHA02713 526 LQDTFNVYTYEW 537 (557)
T ss_pred ehhhcCcccccc
Confidence 777888877663
No 411
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.56 E-value=1.3 Score=45.65 Aligned_cols=174 Identities=9% Similarity=0.133 Sum_probs=114.8
Q ss_pred ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEE
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIY 991 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vw 991 (1131)
+.+-...|.++.|+|+.+.|++......-.+|=-..|+....+++... .....+.+..+|++.++-. ++.+.++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-----~DpE~Ieyig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-----SDPETIEYIGGNQFVIVDERDRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-----CChhHeEEecCCEEEEEehhcceEEEE
Confidence 344455699999999999999998888888887777777666665432 3455778888888888753 7788887
Q ss_pred eCCCcccceeee-------cCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCcc
Q 001178 992 DGSKMECIRQWV-------PQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTV 1064 (1131)
Q Consensus 992 d~~~~~~~~~~~-------~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 1064 (1131)
.+.......... .....+...-.++|+|.++.|+.+=+-+-+.||.+..+.......... .+ .....+
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~-~~----~~~~~~ 230 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL-DP----TADRDL 230 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc-Cc----ccccce
Confidence 776543222211 111115677899999999999999888888888776332111110000 00 001111
Q ss_pred cc---EEEEEcCCCCCeEEEEecCCcEEEEecCCC
Q 001178 1065 FP---LVVTSHPQEPNQLAVGLTDGSVKVIEPSET 1096 (1131)
Q Consensus 1065 ~~---~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~ 1096 (1131)
+. ..+.|.+..+.+|+-+.+++.+.-.+...+
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 11 246788878889999999998888887665
No 412
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.55 E-value=0.036 Score=54.20 Aligned_cols=104 Identities=18% Similarity=0.208 Sum_probs=71.4
Q ss_pred CCEEEEEe-CCeEEEEECCCceeE-EEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccc-cCee
Q 001178 845 DSYVMSAG-GGKVSLFNMMNFKVM-TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ-KHIT 921 (1131)
Q Consensus 845 g~~la~~~-dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~-~~V~ 921 (1131)
+..+++|. +|.|.+|+..-...+ ..+......|.+..-.-+++.+..++..||.|+.|++.-++.+...-.|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34556665 899999887622111 11112223344433333356689999999999999999999888888888 6677
Q ss_pred EEEEccCCCEEEEE--eCCCcEEEEEcCC
Q 001178 922 GLAFSTNLNILVSS--GSDAQLIFWNTDT 948 (1131)
Q Consensus 922 ~l~~s~dg~~l~s~--~~Dg~v~lwd~~~ 948 (1131)
.+..+..+++++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 77777777777777 7788888888765
No 413
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.54 E-value=4.4 Score=49.57 Aligned_cols=239 Identities=11% Similarity=0.010 Sum_probs=121.0
Q ss_pred CCCEEEEEeCCeEEEEECCCceeEEEEeCCCCC--------eeEEEEeC---------------CCCcEEEEEeCCCcEE
Q 001178 844 NDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPA--------STFLAFHP---------------QDNNIIAIGMEDSTIQ 900 (1131)
Q Consensus 844 dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~~~~~la~g~~dg~I~ 900 (1131)
++.+.++..++.|.-.|..+|+.+-++...... .+.+++.. .++..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 444444434788888999999888776532211 12233321 0234677888999999
Q ss_pred EEEeecceeEEeecccccCee-------------EEEEcc--CCCEEEEEeC----------CCcEEEEEcCCCceeeee
Q 001178 901 IYNVRVDEVKTKLKGHQKHIT-------------GLAFST--NLNILVSSGS----------DAQLIFWNTDTWEKRKSI 955 (1131)
Q Consensus 901 iwd~~~~~~~~~~~~h~~~V~-------------~l~~s~--dg~~l~s~~~----------Dg~v~lwd~~~~~~~~~~ 955 (1131)
-.|.++|+..-.+. ..+.|. .+.-+| .+..++.++. +|.|+-+|..+|+..-..
T Consensus 274 ALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99999998876653 222110 111111 1345555542 688999999999876654
Q ss_pred eeecCCCCCCCCceEEEEcCCCcEEEEEeCC--eEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 001178 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHET--QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSI 1033 (1131)
Q Consensus 956 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i 1033 (1131)
....+... .. .+++.....+..+ ...-||.+.+....-.-. . +..+....+........++|
T Consensus 353 ~~g~p~~~--~~------~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn----~----~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 353 DPGNPDPT--AP------PAPGETYTRNTPNSWSVASYDEKLGLVYLPMGN----Q----TPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred ecCCCCcc--cC------CCCCCEeccCCCCccCceEEcCCCCeEEEeCCC----c----cccccCCccccCcccccceE
Confidence 43211110 00 0122222111111 222334333332211000 0 00010111101111224567
Q ss_pred EEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCC---eEEEEecCCcEEEEecCCCcccccc
Q 001178 1034 GVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPN---QLAVGLTDGSVKVIEPSETERKWGV 1102 (1131)
Q Consensus 1034 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~---~l~s~~~Dg~v~iW~~~~~~~~w~~ 1102 (1131)
.-.|++||+..-.+...+...-.-+....++ -+...-.++. .++.++.+|.+++.|..+++..|.+
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~---L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWDMDVPAQPS---LVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EEEeCCCCceEEEecccCCccccccccCCce---EEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 7788888888776654221110001111111 1212111332 8999999999999999999999974
No 414
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.8 Score=44.22 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=62.2
Q ss_pred CCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCe
Q 001178 844 NDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI 920 (1131)
Q Consensus 844 dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V 920 (1131)
+|.++.+.+ ...|++||+.+++.+..-......+..=-...-+..+.+-.-.+|.-..||.++.+++..+. -.+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 455565555 35699999999998877553322221111111133444556678888999998888776655 23344
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001178 921 TGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 921 ~~l~~s~dg~~l~s~~~Dg~v~lwd~~~ 948 (1131)
+.++- |+..|+.++...++++-|.++
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHH
Confidence 55543 555677666666777777666
No 415
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.49 E-value=0.05 Score=39.16 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=29.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCC
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN 442 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~ 442 (1131)
...|.+++|+|...+||.++.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 457999999999999999999999999998 443
No 416
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.34 E-value=4.1 Score=42.11 Aligned_cols=176 Identities=10% Similarity=0.141 Sum_probs=106.9
Q ss_pred eCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeeccc-ccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001178 871 MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH-QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTW 949 (1131)
Q Consensus 871 ~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~ 949 (1131)
.+....+.++.|+| +.+.|++......-.|+=..+|..+.++.-. -..--.+++..+|++.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 34455699999999 4555554545555555555678877765411 223456888888888888888999999988775
Q ss_pred ceeeee---eeecCCCCC-CCCceEEEEcCCCcEEEEEeC-CeEEEEeCCCcccc---eeeecCCC----CCCCeEEEEE
Q 001178 950 EKRKSI---AIQLPAGKL-PVGETRVQFHSDQVRLLVNHE-TQLAIYDGSKMECI---RQWVPQDV----LSSPISSAAY 1017 (1131)
Q Consensus 950 ~~~~~~---~~~~~~~~~-~~~v~~v~~s~d~~~l~~~~d-~~i~vwd~~~~~~~---~~~~~~~~----~~~~v~~i~~ 1017 (1131)
...... .+....... ......++|+|.+..|.+..+ .-+.||.+..+..- .....+.. .-..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 322211 111111111 357789999999998888754 44666655532211 11001100 0235777888
Q ss_pred cc-CCCEEEEEecCCcEEEEECCCCceeeEec
Q 001178 1018 SC-NSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 1018 s~-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
.+ .+.+|+-+.+++.+...|... +.+..+.
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~ls 271 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSG-EVIELLS 271 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCC-CeeeeEE
Confidence 76 566777777888888888754 3344443
No 417
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.27 E-value=1.7 Score=51.69 Aligned_cols=233 Identities=9% Similarity=0.008 Sum_probs=117.1
Q ss_pred CCCEEEEEeCC------CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC------CcEEEEe-CC
Q 001178 420 DGNFIGVAFTK------HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD------KLIRVWD-LS 486 (1131)
Q Consensus 420 dg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d------~~i~iwd-~~ 486 (1131)
.+..++.|+.+ ..+..||..++.-. ....+. +...-.+++... +. +.++||.| .++..|| ..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~-~~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWS-SLAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEe-ecCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 45566666665 36888888876322 111222 222344455543 44 78888888 3567788 44
Q ss_pred CceeE--EecCCccCeEEEeecccCCccEEEEEecCCe-----EEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEE
Q 001178 487 GRKLF--QFEGHEAPVYSVCPHQKENIHFIFSTAVDGK-----IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 487 ~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~-----i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
++-.. .+........... -+|.+.+.|+.||. +-.||..+.+-...-......-..-...-+|...++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEE----ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 43221 1211111111111 24467788888864 5666665543222211111111122223366677777
Q ss_pred eecCCC--CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCc-----EEEEEcCCCeEEEEEeccCCC
Q 001178 560 GTSKEG--DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ-----IKFWDMDNVNMLTSTEAEGGL 632 (1131)
Q Consensus 560 ~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~ 632 (1131)
|.+... -..+..||..+.+....-.......-..++.- ++...+.||.|+. +..||..+.+....-......
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 643332 25788999888765443322222122223332 5667777776653 777888776655442222221
Q ss_pred CCcceEEEcCCCCEEEEEECCCc-----EEEEecCCC
Q 001178 633 PSLPRLRFNKEGNLLVVTTADQG-----IKILANADG 664 (1131)
Q Consensus 633 ~~i~~v~~sp~~~~l~~~~~dg~-----i~iw~~~~~ 664 (1131)
..+..+.. ++...++|+.||. |..||..++
T Consensus 514 s~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 514 SAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 12222222 4667788887763 455554443
No 418
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=0.24 Score=59.20 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=74.8
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
.+..+|.|+..|.|-..|+.+. +.+...-..-.++|++++|+.||+ .++.|-.+|.|.+|| -.++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4557889999999999888764 221111122457999999999999 789999999999999 77788888888888
Q ss_pred CeEEEeecc-cCCccEEEEEecCCeEEEEeC
Q 001178 499 PVYSVCPHQ-KENIHFIFSTAVDGKIKAWLY 528 (1131)
Q Consensus 499 ~v~~~~~~~-~~~~~~l~s~s~dg~i~~wd~ 528 (1131)
+++++-+.. ..++..++++..-|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 877765432 233346777766665 5543
No 419
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.76 E-value=0.034 Score=54.34 Aligned_cols=127 Identities=13% Similarity=0.057 Sum_probs=67.6
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~~ 502 (1131)
..-+.|+.|.-+++...+...+. -.-|...-.-+. -+. -++.|+.+|.|.+|+ ..|.....+..-...|.+
T Consensus 34 ~~~sa~~~v~~~~~~k~k~s~rs--e~~~~e~~~v~~---~~~--~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~ 106 (238)
T KOG2444|consen 34 RATSADGLVRERKVRKHKESCRS--ERFIDEGQRVVT---ASA--KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDL 106 (238)
T ss_pred ccccCCcccccchhhhhhhhhhh--hhhhhcceeecc---cCc--eEEeecccceEEEecCCccchHHHhhhccccccee
Confidence 33456777777776553321110 111211111111 122 488899999999998 344433333323333433
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC-ceEEEEEEccCCCEEEEE
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG-LWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~ 559 (1131)
+-. ...++.+..+++.||.|+.|++.-.+..-....|. .++.....+..+++++..
T Consensus 107 ~Ip-~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a 163 (238)
T KOG2444|consen 107 GIP-NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIA 163 (238)
T ss_pred ccc-cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEee
Confidence 322 23444688899999999999987666655555454 333333333344444443
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.68 E-value=5.2 Score=48.54 Aligned_cols=74 Identities=12% Similarity=0.169 Sum_probs=52.0
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec----------cee----EEe------e-cccccCeeEEEEccC---CC
Q 001178 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV----------DEV----KTK------L-KGHQKHITGLAFSTN---LN 930 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~----------~~~----~~~------~-~~h~~~V~~l~~s~d---g~ 930 (1131)
-.|..+.++| .|++||..+..|.+ |..+.. |+. ... + ..+...|..+.|+|. +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4588899999 89999888876644 433321 111 110 0 134567899999997 57
Q ss_pred EEEEEeCCCcEEEEEcCCCc
Q 001178 931 ILVSSGSDAQLIFWNTDTWE 950 (1131)
Q Consensus 931 ~l~s~~~Dg~v~lwd~~~~~ 950 (1131)
.|+.-..|+++++||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 89999999999999997643
No 421
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.35 E-value=12 Score=42.68 Aligned_cols=151 Identities=12% Similarity=0.072 Sum_probs=84.9
Q ss_pred CCeeEEEEecCCCceEEEEEc--CCCcEEEEeCCCceeEEecCCccCeEEEeecccC--CccEEEEEecCCeEEEEeCCC
Q 001178 455 GGVNDLAFSYPNKQLCIVTCG--DDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKE--NIHFIFSTAVDGKIKAWLYDN 530 (1131)
Q Consensus 455 ~~V~~l~~s~d~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~s~dg~i~~wd~~~ 530 (1131)
.+|..++|. ||++ .++|.- ..|.+++=| .+.+..| .-|..++|.|.. +...+++....+.|.+|.+..
T Consensus 20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd--s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD--SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCE-EEEEeeeeeCCccccCC--ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478899998 6775 455542 122222211 1122233 357888887642 233577777889999998752
Q ss_pred C-----ceeEEecCC---Cc--eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC--CeeeEEEecccCCceEEEEEeC
Q 001178 531 V-----GSRVDYDAP---GL--WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE--GALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 531 ~-----~~~~~~~~~---~~--~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
. +.......+ .- --..+.|+|....|++-.. ...-.++++.. .+....+. ..+.|.|.||.+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~----~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~ 165 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA----RDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTK 165 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec----CceeEeeeeeeCCceEEEecc--CCceEEEEEecC
Confidence 2 111111111 01 1245779998888776653 22223444432 22333333 445899999999
Q ss_pred CCCEEEEEE-cCCcEEEEEcCC
Q 001178 599 TRNRILAAG-EDNQIKFWDMDN 619 (1131)
Q Consensus 599 ~~~~l~~~~-~dg~i~iwd~~~ 619 (1131)
||++|+++- ..=.-++||-..
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCch
Confidence 999877753 334567888654
No 422
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.33 E-value=0.89 Score=51.17 Aligned_cols=153 Identities=12% Similarity=0.157 Sum_probs=89.0
Q ss_pred CCeeEEEEeCCCCcEEEEEe--CCCcEEEEEeecceeEEeecccccCeeEEEEccCC----CEEEEEeCCCcEEEEEcCC
Q 001178 875 PASTFLAFHPQDNNIIAIGM--EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL----NILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~--~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg----~~l~s~~~Dg~v~lwd~~~ 948 (1131)
.++..++|.. +.+.+.+.- .+|.+++=| .+.+.. -..|.++.|.|-+ ..|........|.+|.+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeec----cceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4688899985 555555442 334443322 223333 3459999999853 2455667788999999873
Q ss_pred Cceeeeeeee--c--CCCCCCCCceEEEEcCCCcEEEEEeCCeE-EEEeCCC--cccceeeecCCCCCCCeEEEEEccCC
Q 001178 949 WEKRKSIAIQ--L--PAGKLPVGETRVQFHSDQVRLLVNHETQL-AIYDGSK--MECIRQWVPQDVLSSPISSAAYSCNS 1021 (1131)
Q Consensus 949 ~~~~~~~~~~--~--~~~~~~~~v~~v~~s~d~~~l~~~~d~~i-~vwd~~~--~~~~~~~~~~~~~~~~v~~i~~s~dg 1021 (1131)
........+. . .....+.-...+.|+|....|++-....+ .++++.. .+....+.. .+.|.|.||.+||
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~----~G~IhCACWT~DG 167 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT----SGLIHCACWTKDG 167 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC----CceEEEEEecCcC
Confidence 2221111111 1 11111123346789999999988543333 3444432 333333322 6799999999999
Q ss_pred CEEEEEecC-CcEEEEECC
Q 001178 1022 QLIYATFTD-GSIGVFDAD 1039 (1131)
Q Consensus 1022 ~~l~s~~~d-g~i~vwd~~ 1039 (1131)
+.|+++-.. =.-+|||-.
T Consensus 168 ~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CEEEEEeCCeEEEEEecCc
Confidence 988776522 346788854
No 423
>PHA03098 kelch-like protein; Provisional
Probab=94.09 E-value=1.7 Score=51.91 Aligned_cols=194 Identities=11% Similarity=0.106 Sum_probs=94.0
Q ss_pred CCcEEEEEeCCC------cEEEEEeecceeEEe--ecccccCeeEEEEccCCCEEEEEeCC-----CcEEEEEcCCCcee
Q 001178 886 DNNIIAIGMEDS------TIQIYNVRVDEVKTK--LKGHQKHITGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKR 952 (1131)
Q Consensus 886 ~~~~la~g~~dg------~I~iwd~~~~~~~~~--~~~h~~~V~~l~~s~dg~~l~s~~~D-----g~v~lwd~~~~~~~ 952 (1131)
++.+++.|+.++ .+..||..+.+-... +.........+. -+++.++.||.+ ..+..||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 445555555432 466777766543221 111111122222 367777888765 34777888775432
Q ss_pred eeeeeecCCCCCCCCceEEEEcCCCcEEEEEe---C----CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEE
Q 001178 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH---E----TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIY 1025 (1131)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d----~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~ 1025 (1131)
.......+ ..-.+++. -+++..+.|. + ..+..||..+.+-...-.... ...-.+ +...++++.+
T Consensus 372 ~~~~lp~~-----r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~--~r~~~~-~~~~~~~iyv 442 (534)
T PHA03098 372 EEPPLIFP-----RYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI--SHYGGC-AIYHDGKIYV 442 (534)
T ss_pred eCCCcCcC-----CccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc--cccCce-EEEECCEEEE
Confidence 22211111 11112222 3455555543 1 458889987654332211111 111112 2334677777
Q ss_pred EEecC--------CcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecC-----CcEEEEe
Q 001178 1026 ATFTD--------GSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTD-----GSVKVIE 1092 (1131)
Q Consensus 1026 s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~D-----g~v~iW~ 1092 (1131)
.|+.+ ..+.+||..+.+-.. +.... .+.. .+ . .+.. ++.+++.||.+ +.|..+|
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~-~~~~~-~~r~--~~-----~-~~~~---~~~iyv~GG~~~~~~~~~v~~yd 509 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTE-LSSLN-FPRI--NA-----S-LCIF---NNKIYVVGGDKYEYYINEIEVYD 509 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceee-CCCCC-cccc--cc-----e-EEEE---CCEEEEEcCCcCCcccceeEEEe
Confidence 77643 238888988765332 22111 1110 01 1 1222 55788888765 4677888
Q ss_pred cCCCccccccccC
Q 001178 1093 PSETERKWGVAVP 1105 (1131)
Q Consensus 1093 ~~~~~~~w~~~~p 1105 (1131)
+.+.+ |....+
T Consensus 510 ~~~~~--W~~~~~ 520 (534)
T PHA03098 510 DKTNT--WTLFCK 520 (534)
T ss_pred CCCCE--EEecCC
Confidence 77665 987654
No 424
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.08 E-value=20 Score=44.15 Aligned_cols=197 Identities=14% Similarity=0.117 Sum_probs=113.2
Q ss_pred EEEEEcCCCcEEEEe-CCCceeEEecCCccC--------eEEEeecc--------------cCCccEEEEEecCCeEEEE
Q 001178 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP--------VYSVCPHQ--------------KENIHFIFSTAVDGKIKAW 526 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~--------v~~~~~~~--------------~~~~~~l~s~s~dg~i~~w 526 (1131)
.++.++.++.|.-.| .+|+.+.++...... ...+.+.. ...+..|+.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 356666677777777 777777665432110 11222221 1223478889999999999
Q ss_pred eCCCCceeEEecCCCce--------E----EEEEEcc--CCCEEEEEeecCC------CCceEEEEeCCCCeeeEEEecc
Q 001178 527 LYDNVGSRVDYDAPGLW--------C----TTMLYSA--DGSRLFSCGTSKE------GDSHLVEWNESEGALKRTYIGF 586 (1131)
Q Consensus 527 d~~~~~~~~~~~~~~~~--------v----~~~~~s~--~g~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~ 586 (1131)
|.++++....+...+.. . ..+.-.| .+..+++++...+ .+|.|+-+|.++|+++-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 99998888765432110 0 0111111 1345555543222 2688999999999988776521
Q ss_pred c---------C--------CceEEEEEeCCCCEEEEEE------------------cCCcEEEEEcCCCeEEEEEeccCC
Q 001178 587 R---------K--------KSAGVVQFDTTRNRILAAG------------------EDNQIKFWDMDNVNMLTSTEAEGG 631 (1131)
Q Consensus 587 ~---------~--------~~v~~~~~s~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1131)
. + ..-...++++....++.+. ..+.|.-.|.++|+..-..+...|
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0 0112345555555555422 135577778888888776654222
Q ss_pred C-------CCcceEEEcC-CCC---EEEEEECCCcEEEEecCCCch
Q 001178 632 L-------PSLPRLRFNK-EGN---LLVVTTADQGIKILANADGLR 666 (1131)
Q Consensus 632 ~-------~~i~~v~~sp-~~~---~l~~~~~dg~i~iw~~~~~~~ 666 (1131)
. ....-+.+.. +|+ .++.++.+|.+.++|-.+++.
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 0 0011122222 553 789999999999999999843
No 425
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=0.65 Score=51.06 Aligned_cols=97 Identities=14% Similarity=0.076 Sum_probs=67.8
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEE---------CCCCc--eeeEecCCccccCCCCCCCCccccEEEEEcCCC--
Q 001178 1009 SSPISSAAYSCNSQLIYATFTDGSIGVFD---------ADSLR--LRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQE-- 1075 (1131)
Q Consensus 1009 ~~~v~~i~~s~dg~~l~s~~~dg~i~vwd---------~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~-- 1075 (1131)
.-.|..+..++.|..++.++.+|.+.++= ++.|+ ..|+..+.....-. .+..+....++|||+.
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft---ss~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT---SSTSLTLKQAAWHPSSIL 179 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec---cCCceeeeeccccCCccC
Confidence 45678899999999999999898776653 22332 34444332211111 1234666789999975
Q ss_pred CCeEEEEecCCcEEEEecCCCccccccccCCCC
Q 001178 1076 PNQLAVGLTDGSVKVIEPSETERKWGVAVPVDN 1108 (1131)
Q Consensus 1076 ~~~l~s~~~Dg~v~iW~~~~~~~~w~~~~p~~~ 1108 (1131)
+..|+.-+.|+.||+|++++....|-..+|+..
T Consensus 180 D~hL~iL~sdnviRiy~lS~~telylqpgepgR 212 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTELYLQPGEPGR 212 (741)
T ss_pred CceEEEEecCcEEEEEecCCcchhhccCCCcCC
Confidence 678888999999999999999988887766653
No 426
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.90 E-value=1.6 Score=51.27 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=75.1
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEec-CCccCeEEEeecccCCccEEEEEecCCeEEEEeC-----
Q 001178 456 GVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY----- 528 (1131)
Q Consensus 456 ~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~----- 528 (1131)
..+-+.-|.-++ ..+.-+....+.||| ..+.....-. ...+.|..+.|...++++.+++.+..+.|.++.-
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344455555555 344455566899999 4444322221 4578999999999999999999999999999843
Q ss_pred CCCce----e--EEecCC-CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 529 DNVGS----R--VDYDAP-GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 529 ~~~~~----~--~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
.+..+ + ..+..+ .++|.+..|.++|..++.++ +.+.++|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECCC
Confidence 11111 1 122233 35789999999998887774 478888743
No 427
>PHA03098 kelch-like protein; Provisional
Probab=93.86 E-value=1.5 Score=52.47 Aligned_cols=188 Identities=13% Similarity=0.032 Sum_probs=91.3
Q ss_pred CCCCEEEEEe-C------CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC-----cEEEEEeecceeE
Q 001178 843 KNDSYVMSAG-G------GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDEVK 910 (1131)
Q Consensus 843 ~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-----~I~iwd~~~~~~~ 910 (1131)
.++..++.|+ + ..+..||..+.+-...-..+..........- ++++++.|+.++ .+..||..+++-.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 3555555554 2 2477888877654322111111111112222 678888888763 4777887665322
Q ss_pred E--eecccccCeeEEEEccCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 911 T--KLKGHQKHITGLAFSTNLNILVSSGSD------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 911 ~--~~~~h~~~V~~l~~s~dg~~l~s~~~D------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
. .+........ + ..-+++.++.||.+ ..+..||+.+.+-..... .+... ...+++ ..++...+.
T Consensus 372 ~~~~lp~~r~~~~-~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~--~p~~r---~~~~~~-~~~~~iyv~ 443 (534)
T PHA03098 372 EEPPLIFPRYNPC-V-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP--LPISH---YGGCAI-YHDGKIYVI 443 (534)
T ss_pred eCCCcCcCCccce-E-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC--CCccc---cCceEE-EECCEEEEE
Confidence 1 1211111111 1 22356777777742 357889987754322211 11111 111222 234555555
Q ss_pred Ee-C--------CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCc
Q 001178 983 NH-E--------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLR 1042 (1131)
Q Consensus 983 ~~-d--------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~ 1042 (1131)
|. + ..+.+||..+.+-...-..... ......+. -++++++.|+.+ +.|.+||..+.+
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 42 1 2388899887553322111100 11112222 377888888754 468888887665
No 428
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.67 E-value=15 Score=41.34 Aligned_cols=152 Identities=9% Similarity=0.093 Sum_probs=87.0
Q ss_pred eEEEEeCCCCcEEEEEeCCCcEEEEEeeccee--EEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee-
Q 001178 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV--KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS- 954 (1131)
Q Consensus 878 ~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~- 954 (1131)
..+..++ ++.++++|..-..++-|| .+.. ...-......++++.|.+++..++++ .+|.+ +|....++....
T Consensus 242 ~~v~~~~-dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 242 STVNRSP-DGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred eeEEEcC-CCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 3445666 677777665443233333 2221 11122234568999999998877655 55654 444444331110
Q ss_pred eeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001178 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIG 1034 (1131)
Q Consensus 955 ~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~ 1034 (1131)
.............+..+.|.+++..+++|..|.+.... +.|+.-.............+.+.|.++++.+++| .+|.|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il 394 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLL 394 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEE
Confidence 01111111112458889999999999999888776654 4444433332122225678999998888777766 488877
Q ss_pred EE
Q 001178 1035 VF 1036 (1131)
Q Consensus 1035 vw 1036 (1131)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 65
No 429
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.66 E-value=8.6 Score=39.25 Aligned_cols=193 Identities=12% Similarity=0.090 Sum_probs=127.5
Q ss_pred CeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001178 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955 (1131)
Q Consensus 876 ~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~ 955 (1131)
....++-+| ||..-.++...+.|--.|..+|+....--+....-..|..-|||...++-+.. -|.-.|-++.+. .
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev---t 137 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV---T 137 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce---E
Confidence 455677788 88888888888888888888998776665665666778888998877765544 455566655442 2
Q ss_pred eeecCCCCCCCCceEEEEcCCCcEEEEEeCC----------eEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEE
Q 001178 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHET----------QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIY 1025 (1131)
Q Consensus 956 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~----------~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~ 1025 (1131)
.+..+..+.........|.++|.+-+++..| .|++|+... ...-+.||..|||...+
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-------------G~gpyGi~atpdGsvwy 204 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-------------GGGPYGICATPDGSVWY 204 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-------------CCCCcceEECCCCcEEE
Confidence 3344444555678889999999999886433 355555432 34567889999999888
Q ss_pred EEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1026 ATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1026 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
+.-.++.|...|..++. ...+....... .... =.|+..-+..-+|....+.+.-+|.+...
T Consensus 205 aslagnaiaridp~~~~-aev~p~P~~~~------~gsR----riwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 205 ASLAGNAIARIDPFAGH-AEVVPQPNALK------AGSR----RIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EeccccceEEcccccCC-cceecCCCccc------cccc----ccccCccCcEEEeccCCceeeEeCccccc
Confidence 87778888888877763 22222222111 1111 12333345677777777788888876555
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=93.55 E-value=14 Score=40.72 Aligned_cols=158 Identities=11% Similarity=0.013 Sum_probs=88.8
Q ss_pred ccCeeEEEEccCCCEEEEEeCCCcEEE-EEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCC
Q 001178 917 QKHITGLAFSTNLNILVSSGSDAQLIF-WNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSK 995 (1131)
Q Consensus 917 ~~~V~~l~~s~dg~~l~s~~~Dg~v~l-wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~ 995 (1131)
.+.+.++.+.+++.+++++ ..|.+.. ++-. ++. -.... ......+..+.+.+++..++++..|.+++=..+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~g-g~t--W~~~~---~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPG-QTA--WTPHQ---RNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCC-CCe--EEEee---CCCcccceeeeEcCCCCEEEEecCCEEEEccCCC
Confidence 4578899999988666554 4554432 2211 110 00111 1222678899999999998888888765433444
Q ss_pred cccceeeecC-CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCC
Q 001178 996 MECIRQWVPQ-DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQ 1074 (1131)
Q Consensus 996 ~~~~~~~~~~-~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~ 1074 (1131)
|........+ ......+.++.|.+++..++++ .+|.+. ...+.|+....+...... .. .-..+.|..
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~-------~~--~~~~~~~~~- 312 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEV-------PS--NFYKIVFLD- 312 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCC-------Cc--ceEEEEEeC-
Confidence 4433322211 1013468899999988866655 577665 455666654443321111 11 112355544
Q ss_pred CCCeEEEEecCCcEEEEecC
Q 001178 1075 EPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1075 ~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
+ +.....+..|.|.-|+-.
T Consensus 313 ~-~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 313 P-EKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred C-CceEEECCCceEEEecCC
Confidence 2 345667778988877654
No 431
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.55 E-value=0.12 Score=60.22 Aligned_cols=199 Identities=11% Similarity=0.158 Sum_probs=112.6
Q ss_pred CCCCCeeEEEecCC-CCEEEEEe-CCeEEEEECC--CceeEEEEe-----CCCCCeeEEEEeCC--CCcEEEEEeCCCcE
Q 001178 831 NAEDVVPCVALSKN-DSYVMSAG-GGKVSLFNMM--NFKVMTTFM-----SPPPASTFLAFHPQ--DNNIIAIGMEDSTI 899 (1131)
Q Consensus 831 ~~~~~i~~l~~s~d-g~~la~~~-dg~i~vwd~~--~~~~~~~~~-----~~~~~i~~l~~s~~--~~~~la~g~~dg~I 899 (1131)
+..+.+..+.|-.- ...+. . -|.+.||+++ .|+....+. .....+.-+.|.|- +.-++..+..+++|
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 45566666666321 11111 2 2678889865 344333222 12223344444431 55778888899999
Q ss_pred EEEEeecceeEEeecccccCeeEEE-----------EccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCC-CC
Q 001178 900 QIYNVRVDEVKTKLKGHQKHITGLA-----------FSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP-VG 967 (1131)
Q Consensus 900 ~iwd~~~~~~~~~~~~h~~~V~~l~-----------~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~-~~ 967 (1131)
++....+... ..+++|...++.++ .||||..+|.+..||.+++|.+.-.......+......|.. ..
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~ 286 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPR 286 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCc
Confidence 9988765432 55667887777654 48999999999999999999876433333333333333321 22
Q ss_pred ceEEEEcCC---------CcEEEEEe--CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCE------------E
Q 001178 968 ETRVQFHSD---------QVRLLVNH--ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQL------------I 1024 (1131)
Q Consensus 968 v~~v~~s~d---------~~~l~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~------------l 1024 (1131)
++.+ |... ..+++++. +..+++|.....+|...+.. ..|..+. -+||+. +
T Consensus 287 vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~-----d~v~iV~-p~~~~v~~~~~~~~~~~~~ 359 (1283)
T KOG1916|consen 287 VCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLI-----DGVQIVG-PHDGEVTDLSMCQWMTTRL 359 (1283)
T ss_pred eeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcc-----cceEeec-CCCccccchhhhHHHHHHH
Confidence 3333 3322 12334443 56799999888777733322 2344444 344442 2
Q ss_pred EEEecCCcEEEEECC
Q 001178 1025 YATFTDGSIGVFDAD 1039 (1131)
Q Consensus 1025 ~s~~~dg~i~vwd~~ 1039 (1131)
+.-+-|+.|.+|.-.
T Consensus 360 v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 360 VSRSVDGTIKIWQNR 374 (1283)
T ss_pred HHhhhHHHHHHhhcc
Confidence 334467888888644
No 432
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.50 E-value=24 Score=43.19 Aligned_cols=113 Identities=16% Similarity=0.056 Sum_probs=68.8
Q ss_pred ceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC-CceeeE
Q 001178 968 ETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS-LRLRCR 1046 (1131)
Q Consensus 968 v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~~~ 1046 (1131)
..-.+..|-..++.+|-...+++||+...++.+...... ....|+.+++ .+..+++|+..-.|..+.++. ++.+..
T Consensus 936 ~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~-~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~ 1012 (1205)
T KOG1898|consen 936 GPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKF-IPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIV 1012 (1205)
T ss_pred ccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhcc-CceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEE
Confidence 344577788889999999999999999888777654432 1456777776 467889888666666554432 233333
Q ss_pred ecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1047 IAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
+..-. .+. .|. ++.+ - |...++.+..=|.+.+-++..
T Consensus 1013 fadD~-~pR-------~Vt--~~~~-l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1013 FADDP-VPR-------HVT--ALEL-L-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred EeCCC-ccc-------eee--EEEE-e-cCCceeeccccCcEEEEECCC
Confidence 33211 111 122 2222 2 445677777766666666543
No 433
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.28 E-value=1.3 Score=53.43 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=60.8
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCC----------C--ceeeEecCCccccCCCCCCCCccccEEEEEcCCC-
Q 001178 1009 SSPISSAAYSCNSQLIYATFTDGSIGVFDADS----------L--RLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQE- 1075 (1131)
Q Consensus 1009 ~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~----------~--~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~- 1075 (1131)
...|..+.++++|++|+..|.. .|.|-.+.. | ...|+........ +. .........+.|||..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~-~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~-~~--~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPR-GVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERF-FT--SNSSLEIKQVRWHPWSE 159 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCC-cEEEEEeccccCccccccCCCcceeEEEEEechhh-cc--CCCCceEEEEEEcCCCC
Confidence 5679999999999999999964 455554432 1 2233322111111 11 1223555689999973
Q ss_pred -CCeEEEEecCCcEEEEecCCCcccccccc
Q 001178 1076 -PNQLAVGLTDGSVKVIEPSETERKWGVAV 1104 (1131)
Q Consensus 1076 -~~~l~s~~~Dg~v~iW~~~~~~~~w~~~~ 1104 (1131)
+..|+.-+.|+++|+||+.....-|.+..
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 57899999999999999987666666665
No 434
>PHA02790 Kelch-like protein; Provisional
Probab=93.18 E-value=3.3 Score=48.43 Aligned_cols=185 Identities=10% Similarity=0.009 Sum_probs=89.3
Q ss_pred CCCEEEEEe-C-----CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC--CcEEEEEeeccee--EEee
Q 001178 844 NDSYVMSAG-G-----GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED--STIQIYNVRVDEV--KTKL 913 (1131)
Q Consensus 844 dg~~la~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d--g~I~iwd~~~~~~--~~~~ 913 (1131)
++..+++|+ + .++..||..+++-...-.-+..........- ++.+.++|+.+ ..+..||..+++- +..+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE-CCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 455556665 2 2477788877543322111111111111223 77888888864 3577888765432 2222
Q ss_pred cccccCeeEEEEccCCCEEEEEeCCC---cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEE
Q 001178 914 KGHQKHITGLAFSTNLNILVSSGSDA---QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAI 990 (1131)
Q Consensus 914 ~~h~~~V~~l~~s~dg~~l~s~~~Dg---~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v 990 (1131)
........ +..-+|+..+.||.++ .+..||..+.+-........+. .-.+ +..-+|+..+.| |.+.+
T Consensus 350 ~~~r~~~~--~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r-----~~~~-~~~~~~~IYv~G--G~~e~ 419 (480)
T PHA02790 350 LKPRCNPA--VASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH-----YKSC-ALVFGRRLFLVG--RNAEF 419 (480)
T ss_pred CCCCcccE--EEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc-----ccce-EEEECCEEEEEC--CceEE
Confidence 21111112 2233677888888654 4778888765432222211111 1111 223345555555 45678
Q ss_pred EeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCc
Q 001178 991 YDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLR 1042 (1131)
Q Consensus 991 wd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~ 1042 (1131)
||..+.+-... ............+ .-+|+..++||.+ .++.+||..+.+
T Consensus 420 ydp~~~~W~~~-~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 420 YCESSNTWTLI-DDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ecCCCCcEeEc-CCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 88876543321 1111001122222 2377888888754 346666665544
No 435
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.15 E-value=12 Score=38.74 Aligned_cols=192 Identities=12% Similarity=0.100 Sum_probs=109.2
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccc-cCCCCCCCCCeeEEEecCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMT-NDVPENAEDVVPCVALSKN 844 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~i~~l~~s~d 844 (1131)
...-...+.|..+|..+-+.+.-|.-.+ +.+++.+|+... ..++ ...--..+++..|
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l--------------------~~~d~~tg~~~~~~~l~--~~~FgEGit~~~d 100 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSL--------------------RKVDLETGKVLQSVPLP--PRYFGEGITILGD 100 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEE--------------------EEEETTTSSEEEEEE-T--TT--EEEEEEETT
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEE--------------------EEEECCCCcEEEEEECC--ccccceeEEEECC
Confidence 3455677888888888888777664333 233444454332 1222 2223345555544
Q ss_pred CCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccc-----cC
Q 001178 845 DSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ-----KH 919 (1131)
Q Consensus 845 g~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~-----~~ 919 (1131)
.-+..+--++...+||..+.+.+.++.-. +.=..++. ++..|+..+....++++|..+-+....+.... ..
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred EEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCC
Confidence 43444444899999999999999988643 34455553 55666667667789999987766555544221 23
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC---------CCCCCCceEEEEcCCCcEEEEEe
Q 001178 920 ITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA---------GKLPVGETRVQFHSDQVRLLVNH 984 (1131)
Q Consensus 920 V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~---------~~~~~~v~~v~~s~d~~~l~~~~ 984 (1131)
++-|.|- +|...|=.-....|..-|..+|+.....-+.... .....-...||+.|....+.+..
T Consensus 177 LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 177 LNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5556775 6766776666667888888887765543221110 01124567899988877666544
No 436
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.12 E-value=3.1 Score=48.88 Aligned_cols=120 Identities=14% Similarity=0.271 Sum_probs=78.1
Q ss_pred EEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec-ccccCeeEEEEc--cCCCEEEEEeCCCcEEEEE
Q 001178 869 TFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-GHQKHITGLAFS--TNLNILVSSGSDAQLIFWN 945 (1131)
Q Consensus 869 ~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s--~dg~~l~s~~~Dg~v~lwd 945 (1131)
++...-..++-+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|. |||+.+++.|-...|.++.
T Consensus 24 ~~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 24 TFETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3444444555566665 55555555556679999998876443322 356889999985 6899999999999999985
Q ss_pred cCC---------CceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeC
Q 001178 946 TDT---------WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDG 993 (1131)
Q Consensus 946 ~~~---------~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~ 993 (1131)
-.. +..... +.+ ....+.+|....|.++|.+ +++.++.+.|+|-
T Consensus 103 Q~R~dy~~~~p~w~~i~~--i~i-~~~T~h~Igds~Wl~~G~L-vV~sGNqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRK--IDI-SSHTPHPIGDSIWLKDGTL-VVGSGNQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEE--EEe-ecCCCCCccceeEecCCeE-EEEeCCEEEEECC
Confidence 421 111111 111 1233367889999999864 5566778888874
No 437
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.92 E-value=0.94 Score=54.79 Aligned_cols=146 Identities=14% Similarity=0.101 Sum_probs=95.3
Q ss_pred CCCeeEEEecCCCCEEEEEe--CC-eEEEEECCCceeEE-----EEeC------CCCCeeEEEEeCCCCcEEEEEeCCCc
Q 001178 833 EDVVPCVALSKNDSYVMSAG--GG-KVSLFNMMNFKVMT-----TFMS------PPPASTFLAFHPQDNNIIAIGMEDST 898 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg-~i~vwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~~~~~la~g~~dg~ 898 (1131)
.-++..+...+|++..++.. +| .|..||+.+...-. .+.. ......++.|.|.-....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45666777888888777665 33 58999987643221 1111 12345677787743445667788999
Q ss_pred EEEEEeecce-eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCC
Q 001178 899 IQIYNVRVDE-VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1131)
Q Consensus 899 I~iwd~~~~~-~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 977 (1131)
|++..+.... ....+. -....+|++|+|.|+.++.|-..|++.-|...-... ..+..+.......|.+|.|-...
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik---~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK---SEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccccee---ecccCCCcCCCcceeEEEEecce
Confidence 9988765332 222222 345689999999999999999999999887654221 11222222223678899998888
Q ss_pred cEEEE
Q 001178 978 VRLLV 982 (1131)
Q Consensus 978 ~~l~~ 982 (1131)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 88876
No 438
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=2.3 Score=51.64 Aligned_cols=147 Identities=10% Similarity=0.100 Sum_probs=88.9
Q ss_pred cCeeEEEEccCCCEEEE--EeCCCcEEEEEcCCCceeee---eeeec--CCCCCCCCceEEEEcCCCc--EEEEEeCCeE
Q 001178 918 KHITGLAFSTNLNILVS--SGSDAQLIFWNTDTWEKRKS---IAIQL--PAGKLPVGETRVQFHSDQV--RLLVNHETQL 988 (1131)
Q Consensus 918 ~~V~~l~~s~dg~~l~s--~~~Dg~v~lwd~~~~~~~~~---~~~~~--~~~~~~~~v~~v~~s~d~~--~l~~~~d~~i 988 (1131)
-+|..+...+|+...++ .+.+-.|..||+.+-..... .++.. ..........++.|.|.-. .+++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35666667778665443 34455789999987432221 11110 1111224556677776533 3444578888
Q ss_pred EEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEE
Q 001178 989 AIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLV 1068 (1131)
Q Consensus 989 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1068 (1131)
++..+........-... ....++++|+|.|+.++.|...|++.-|.. +++....+...-..+ ...+++
T Consensus 181 ~V~~~~~~~~~v~s~p~---t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e--------~yrvl~ 248 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPV---TNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEE--------NYRVLS 248 (1405)
T ss_pred hhhhhhhhhhhhcccCc---ccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCC--------CcceeE
Confidence 88877643333222222 568899999999999999999999998874 355444444333221 356778
Q ss_pred EEEcCCCC
Q 001178 1069 VTSHPQEP 1076 (1131)
Q Consensus 1069 v~~~p~~~ 1076 (1131)
|+|.....
T Consensus 249 v~Wl~t~e 256 (1405)
T KOG3630|consen 249 VTWLSTQE 256 (1405)
T ss_pred EEEeccee
Confidence 88887543
No 439
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.64 E-value=12 Score=43.96 Aligned_cols=177 Identities=10% Similarity=0.126 Sum_probs=88.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCcccee-eeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCc
Q 001178 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQS-LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR 488 (1131)
Q Consensus 411 ~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~ 488 (1131)
.+..+.|+.+..+| +...+|+++||++-... .... .........|..+.|...|= .+.+. +|.+.+-+ ....
T Consensus 85 ~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELI-CVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCCceEE-EEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCcc
Confidence 78899999877655 56689999999986532 2110 11122333466666666553 33333 44555544 3333
Q ss_pred eeEEecC---CccCeEEEeeccc-CCccEEEEEe-cCCeEEEEeCCCCc-eeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 489 KLFQFEG---HEAPVYSVCPHQK-ENIHFIFSTA-VDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 489 ~~~~~~~---h~~~v~~~~~~~~-~~~~~l~s~s-~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.+.++.. ...+-.|-..... .....++-.. ..+ ..+...+... ....+......+..+.+||+.++|+.-..
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~- 236 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE- 236 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec-
Confidence 3333332 1111111111111 1111111111 000 0111111111 11122223356888999999999998875
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
.|.|++-+....+....+..........++|..
T Consensus 237 ---~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 237 ---TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred ---CCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 888988888777766666533222222455543
No 440
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.42 E-value=20 Score=40.41 Aligned_cols=203 Identities=11% Similarity=0.027 Sum_probs=107.5
Q ss_pred ecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCC--CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccc-
Q 001178 841 LSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ- 917 (1131)
Q Consensus 841 ~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~- 917 (1131)
..-||+.++...+|.|.-+|..++..+-...... ..+..-.+.. +|+ |..++.+|.++.+|..+|+.+-......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 4446666666567888888888887664433221 2233333333 555 6678899988888988888877766554
Q ss_pred cCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCC
Q 001178 918 KHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSK 995 (1131)
Q Consensus 918 ~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~ 995 (1131)
-.+..-..-.++ .+...+.|+.+.-.+..+++.......... . ...+..-....++...+... ++.+.-.+..+
T Consensus 143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~--~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP-L--SLSIYGSPAIASGTVYVGSDGYDGILYALNAED 218 (370)
T ss_pred eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc-c--ccccccCceeecceEEEecCCCcceEEEEEccC
Confidence 112222222233 233333667777777777665444322211 0 00111111133333333333 44667777777
Q ss_pred cccceeeecCCCC-CCCe------EEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCC
Q 001178 996 MECIRQWVPQDVL-SSPI------SSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 996 ~~~~~~~~~~~~~-~~~v------~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 1050 (1131)
|..+......... ...+ ..-..--++ -+..++.++.+...+..+|+.+.+....
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 7766553221100 0111 110111122 2355667788999999999988887753
No 441
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.27 E-value=8.9 Score=43.24 Aligned_cols=206 Identities=14% Similarity=0.090 Sum_probs=108.8
Q ss_pred EEEEEeCCCcEEEEEeecceeEEeeccc--ccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCC
Q 001178 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGH--QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPV 966 (1131)
Q Consensus 889 ~la~g~~dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~ 966 (1131)
.+.++..+|.|.-.|..+++.+-....- ...+.+-.+..+|+ +..++.++.++..|..+++......... . .
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~----~-~ 143 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG----S-P 143 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC----C-e
Confidence 3444577777777777777654222111 12233333333665 7777888888888887777654443322 0 1
Q ss_pred CceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCcee
Q 001178 967 GETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT--DGSIGVFDADSLRLR 1044 (1131)
Q Consensus 967 ~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~--dg~i~vwd~~~~~~~ 1044 (1131)
.......-.++..+....++.+.-.+..+|+..-...........+..--...++ .++.+.. ++.+.-.|+.+|...
T Consensus 144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEe
Confidence 1222233344444444456777777777777655533321001111111112233 3444444 556777888888877
Q ss_pred eEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCccccccccC
Q 001178 1045 CRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVP 1105 (1131)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w~~~~p 1105 (1131)
...................+..-.|- .+..+..++.++.+.-.+...++..|....+
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~----v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVY----VDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeecccCcccccccccccCceEE----ECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 76543222211100000001110111 1224577888888999999999999999987
No 442
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.06 E-value=7.2 Score=45.62 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=87.4
Q ss_pred CCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcC
Q 001178 896 DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1131)
Q Consensus 896 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 975 (1131)
--.|+||+. +|.++..+.-..+++..+.|+.+ ..|++...||++.+|++.......... ........|..+.|..
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~sv---g~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSV---GFESQMSDIVECRFFH 137 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhccccc---ccccccCceeEEEEec
Confidence 345888885 46666665555568999999976 466777899999999987644322111 1111113344444444
Q ss_pred CCcEEEEEeCCeEE--------EEeCCC---c----ccceeeec----------------------------C--CCCCC
Q 001178 976 DQVRLLVNHETQLA--------IYDGSK---M----ECIRQWVP----------------------------Q--DVLSS 1010 (1131)
Q Consensus 976 d~~~l~~~~d~~i~--------vwd~~~---~----~~~~~~~~----------------------------~--~~~~~ 1010 (1131)
.|..+.+.++.-+. +|.... . .+...+.+ | ....+
T Consensus 138 ~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 138 NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 44443332222221 221111 0 00000000 0 00135
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEec
Q 001178 1011 PISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 1011 ~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
.+..+..||+.++|+-=..+|.|.+-+++..+..+.+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 67889999999999999999999999999888887776
No 443
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.57 E-value=0.61 Score=32.52 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=26.5
Q ss_pred CcEEEEEEecCCC--cEEEEEcCCCeEEEEECCC
Q 001178 348 SSVVSMDFHPFHH--TLLVVGCGDGEITLWDVGL 379 (1131)
Q Consensus 348 ~~V~~~~fspdg~--~llasg~~dg~v~iwd~~~ 379 (1131)
+.|.+|+|||+.. .||+..-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998654 5788888889999999985
No 444
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.36 E-value=5.9 Score=44.50 Aligned_cols=147 Identities=10% Similarity=0.067 Sum_probs=79.3
Q ss_pred CCeeEEEEeCCCCcEEEEEe-----------CCC-cEEEEEeec--ce--eEEeecccccCeeEEEEccCCCEEEEEeCC
Q 001178 875 PASTFLAFHPQDNNIIAIGM-----------EDS-TIQIYNVRV--DE--VKTKLKGHQKHITGLAFSTNLNILVSSGSD 938 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~-----------~dg-~I~iwd~~~--~~--~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 938 (1131)
.....++|.+ +++++++-. ..+ .|.+++-.+ |+ ....+...-.....+++.++| +++ +..+
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 4567888988 777776542 223 676665432 22 223343334456889999998 444 4444
Q ss_pred CcEEEEEcCCCce---eeeeeee-cCCC--CCCCCceEEEEcCCCcEEEE-EeC-------------------CeEEEEe
Q 001178 939 AQLIFWNTDTWEK---RKSIAIQ-LPAG--KLPVGETRVQFHSDQVRLLV-NHE-------------------TQLAIYD 992 (1131)
Q Consensus 939 g~v~lwd~~~~~~---~~~~~~~-~~~~--~~~~~v~~v~~s~d~~~l~~-~~d-------------------~~i~vwd 992 (1131)
...++.+.+.... ....... .... ........++|.|||.+.++ +.. +.+.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 4333435443211 1111112 1111 01245678999999987664 311 3455555
Q ss_pred CCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 001178 993 GSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
..+++. ..+... -.....++|+++|+++++-.
T Consensus 171 pdg~~~-e~~a~G---~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKL-RVVAHG---FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeE-EEEecC---cCCCccceECCCCCEEEEcc
Confidence 554432 222221 34567899999999877644
No 445
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.11 E-value=0.51 Score=55.29 Aligned_cols=126 Identities=18% Similarity=0.237 Sum_probs=79.7
Q ss_pred CCCcEEEEEEe----cCCCcEEEEEcCCCeEEEEECC--CCcccccccceeecccccccceeceeccCCCCCEEEEEE--
Q 001178 346 QGSSVVSMDFH----PFHHTLLVVGCGDGEITLWDVG--LRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW-- 417 (1131)
Q Consensus 346 h~~~V~~~~fs----pdg~~llasg~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-- 417 (1131)
..+.|-.++|- |.++ -.-|...|||++ .|+......+++ ...-...+.-+.|
T Consensus 131 f~G~v~dl~fah~~~pk~~------~~vg~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR------RLVGELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWCP 190 (1283)
T ss_pred CCCCcccccccccCChHHH------HHhhhhheeehHhhccccccceEEee--------------cCcCCCCcceeeecc
Confidence 56677777774 3333 123678999876 344443322222 1122223334444
Q ss_pred -cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEE-----------ecCCCceEEEEEcCCCcEEEEe-
Q 001178 418 -SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF-----------SYPNKQLCIVTCGDDKLIRVWD- 484 (1131)
Q Consensus 418 -spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~-----------s~d~~~~~l~s~s~d~~i~iwd- 484 (1131)
-++..++..+-.+++|++.++..... .-+.+|..++..++| ||||+ .++..+.||.++.|-
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 44677888888888998887766432 124568877776655 88999 899999999999998
Q ss_pred -CCCc----eeEEecCCc
Q 001178 485 -LSGR----KLFQFEGHE 497 (1131)
Q Consensus 485 -~~~~----~~~~~~~h~ 497 (1131)
+.|+ ++...+.|+
T Consensus 265 yi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeccccHhhhhccCCCC
Confidence 6665 445566676
No 446
>PHA02790 Kelch-like protein; Provisional
Probab=91.10 E-value=8.1 Score=45.19 Aligned_cols=188 Identities=11% Similarity=0.050 Sum_probs=91.7
Q ss_pred CCcEEEEEeCCC-----cEEEEEeecceeEE--eecccccCeeEEEEccCCCEEEEEeCC--CcEEEEEcCCCceeeeee
Q 001178 886 DNNIIAIGMEDS-----TIQIYNVRVDEVKT--KLKGHQKHITGLAFSTNLNILVSSGSD--AQLIFWNTDTWEKRKSIA 956 (1131)
Q Consensus 886 ~~~~la~g~~dg-----~I~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D--g~v~lwd~~~~~~~~~~~ 956 (1131)
++.++++|+.++ .+..||..+++-.. .+.........+ .-+|...+.||.+ ..+..||..+++-.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 567777787653 46678877654322 222111112222 2467777888764 357788876543222111
Q ss_pred eecCCCCCCCCceEEEEcCCCcEEEEEe-C---CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 001178 957 IQLPAGKLPVGETRVQFHSDQVRLLVNH-E---TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGS 1032 (1131)
Q Consensus 957 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d---~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~ 1032 (1131)
. +.. ..-..+ ..-+|+..+.|+ + ..+..||..+.+-...-..... .... + +..-+|++.+.| |.
T Consensus 349 l--~~~---r~~~~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~-r~~~-~-~~~~~~~IYv~G---G~ 416 (480)
T PHA02790 349 L--LKP---RCNPAV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP-HYKS-C-ALVFGRRLFLVG---RN 416 (480)
T ss_pred C--CCC---CcccEE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc-cccc-e-EEEECCEEEEEC---Cc
Confidence 1 111 111122 223455555543 2 3477888776543221111100 1111 2 223466666666 45
Q ss_pred EEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecC-----CcEEEEecCCCcccccc
Q 001178 1033 IGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTD-----GSVKVIEPSETERKWGV 1102 (1131)
Q Consensus 1033 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~D-----g~v~iW~~~~~~~~w~~ 1102 (1131)
+.+||..+.+-. .+.... .+.. . ..+.+. ++.+.+.||.+ .++..||+.+.+ |..
T Consensus 417 ~e~ydp~~~~W~-~~~~m~-~~r~----~---~~~~v~----~~~IYviGG~~~~~~~~~ve~Yd~~~~~--W~~ 476 (480)
T PHA02790 417 AEFYCESSNTWT-LIDDPI-YPRD----N---PELIIV----DNKLLLIGGFYRGSYIDTIEVYNNRTYS--WNI 476 (480)
T ss_pred eEEecCCCCcEe-EcCCCC-CCcc----c---cEEEEE----CCEEEEECCcCCCcccceEEEEECCCCe--EEe
Confidence 788998766433 222111 1110 0 111222 56788888865 357788887666 754
No 447
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.80 E-value=0.077 Score=57.60 Aligned_cols=241 Identities=12% Similarity=0.087 Sum_probs=132.3
Q ss_pred EEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEE
Q 001178 772 RLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA 851 (1131)
Q Consensus 772 ~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 851 (1131)
...+.+.+..++.++-+..+..||-.. ..... .........++|..+|..+++.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag----------------------q~~le----~n~tg~aldm~wDkegdvlavl 92 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG----------------------QVILE----LNPTGKALDMAWDKEGDVLAVL 92 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc----------------------ceecc----cCCchhHhhhhhccccchhhhh
Confidence 445666666677777777776665221 11111 1234455567888888877766
Q ss_pred e--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCC
Q 001178 852 G--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL 929 (1131)
Q Consensus 852 ~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg 929 (1131)
. .+.+.+||+.+......-.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|...++++++.+.+
T Consensus 93 Aek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 93 AEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred hhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence 5 68899999976433222112222233378999 88899999999999999988777666665599999999999876
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEE-----EeCCCcccceeeec
Q 001178 930 NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAI-----YDGSKMECIRQWVP 1004 (1131)
Q Consensus 930 ~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v-----wd~~~~~~~~~~~~ 1004 (1131)
+.+.++.|..+.+-...+...........+......-...=.|..-|..+..--.+.+.+ -..+....+ .+..
T Consensus 172 -~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval-~fq~ 249 (615)
T KOG2247|consen 172 -YVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL-QFQE 249 (615)
T ss_pred -eeeecCcHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce-Eeee
Confidence 555666665544433332111110000000000000000111222233332211111111 111111111 3333
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceee
Q 001178 1005 QDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC 1045 (1131)
Q Consensus 1005 ~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1045 (1131)
. .+.+.++.|--||.. .-+..-|.|..-.+.++++..
T Consensus 250 ~---~gni~cyrwylDg~i-~igf~ag~iV~iS~h~aeLga 286 (615)
T KOG2247|consen 250 K---YGNIHCYRWYLDGYI-LIGFDAGYIVSISAHNAELGA 286 (615)
T ss_pred c---CCceeEEEEeccccc-cccccceeEEEEeccchHHHH
Confidence 3 567888888888754 446666777777777766543
No 448
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=90.48 E-value=58 Score=41.04 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=19.2
Q ss_pred CCCccceEEEEeecCCceEEEeeecc
Q 001178 764 TDSASKVARLLYTNSGIGILALWSNG 789 (1131)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~~~~dg 789 (1131)
..+-..+.+++++|||...++-..+-
T Consensus 658 ~A~lnsp~alaVsPdg~v~IAD~gN~ 683 (1899)
T KOG4659|consen 658 QAKLNSPYALAVSPDGDVIIADSGNS 683 (1899)
T ss_pred ccccCCcceEEECCCCcEEEecCCch
Confidence 34667788999999999777654443
No 449
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.38 E-value=11 Score=42.44 Aligned_cols=149 Identities=13% Similarity=0.084 Sum_probs=77.8
Q ss_pred cCeeEEEEccCCCEEEEEe-----------CCC-cEEEEEcCCC--ceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE
Q 001178 918 KHITGLAFSTNLNILVSSG-----------SDA-QLIFWNTDTW--EKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1131)
Q Consensus 918 ~~V~~l~~s~dg~~l~s~~-----------~Dg-~v~lwd~~~~--~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 983 (1131)
....+|+|.++|+++++-. ..+ .|.+++-..+ .......+. .+ . .....+++.++| + .++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa--~~-l-~~p~Gi~~~~~G-l-yV~ 87 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA--EE-L-SMVTGLAVAVGG-V-YVA 87 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee--cC-C-CCccceeEecCC-E-EEe
Confidence 3467889999998877753 223 6766654332 111111111 11 1 345778999999 4 444
Q ss_pred eCCeEEEE-eCCCc-----ccceeeecCCC----CCCCeEEEEEccCCCEEEEEecC-------------------CcEE
Q 001178 984 HETQLAIY-DGSKM-----ECIRQWVPQDV----LSSPISSAAYSCNSQLIYATFTD-------------------GSIG 1034 (1131)
Q Consensus 984 ~d~~i~vw-d~~~~-----~~~~~~~~~~~----~~~~v~~i~~s~dg~~l~s~~~d-------------------g~i~ 1034 (1131)
....|..| +.... +....+..... +......++|.|||.+.++-+.. |.|.
T Consensus 88 ~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 88 TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence 44455544 44321 11111111111 13457789999999866655521 3455
Q ss_pred EEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCC
Q 001178 1035 VFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG 1086 (1131)
Q Consensus 1035 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg 1086 (1131)
-++.++++.. .+. .+..++..++|+| ++.++++-..++
T Consensus 168 r~~pdg~~~e-~~a------------~G~rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 168 RYNPDGGKLR-VVA------------HGFQNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEecCCCeEE-EEe------------cCcCCCccceECC-CCCEEEEccCCC
Confidence 5555544422 111 2234456789998 567776655443
No 450
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.37 E-value=15 Score=40.44 Aligned_cols=164 Identities=14% Similarity=0.158 Sum_probs=92.8
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCCc------EEEEEeec--c--eeE-----Eeeccccc--------CeeEEEEccCCC
Q 001178 874 PPASTFLAFHPQDNNIIAIGMEDST------IQIYNVRV--D--EVK-----TKLKGHQK--------HITGLAFSTNLN 930 (1131)
Q Consensus 874 ~~~i~~l~~s~~~~~~la~g~~dg~------I~iwd~~~--~--~~~-----~~~~~h~~--------~V~~l~~s~dg~ 930 (1131)
-+.++.+.+.++++.++| .+++|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788999874555554 566666 65555543 1 011 11222222 334788888888
Q ss_pred EEEEEeCC------CcEEEEEcCCCceeeeeeee--c-------CCCCCCCCceEEEEcCCCcEEEEE------eCC--e
Q 001178 931 ILVSSGSD------AQLIFWNTDTWEKRKSIAIQ--L-------PAGKLPVGETRVQFHSDQVRLLVN------HET--Q 987 (1131)
Q Consensus 931 ~l~s~~~D------g~v~lwd~~~~~~~~~~~~~--~-------~~~~~~~~v~~v~~s~d~~~l~~~------~d~--~ 987 (1131)
++++.-.+ ..|+.++.+ ++......+. . ...........++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887777 778888876 4433322111 1 112233678899999999955542 122 1
Q ss_pred -------EEE--EeCCC-cccceeeecCCC------CCCCeEEEEEccCCCEEEEEec-----CCcEEEEECC
Q 001178 988 -------LAI--YDGSK-MECIRQWVPQDV------LSSPISSAAYSCNSQLIYATFT-----DGSIGVFDAD 1039 (1131)
Q Consensus 988 -------i~v--wd~~~-~~~~~~~~~~~~------~~~~v~~i~~s~dg~~l~s~~~-----dg~i~vwd~~ 1039 (1131)
+++ ||..+ +.....+.-... ....|+.+.+-+|+++|+.-=. ...++||.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 55544 333444322211 2578899999999997665321 2355555443
No 451
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.23 E-value=1.1 Score=31.23 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=26.6
Q ss_pred CCEEEEEEcCC-C--CEEEEEeCCCeEEEEEecC
Q 001178 410 ISVSRVAWSPD-G--NFIGVAFTKHLIHLYTYQG 440 (1131)
Q Consensus 410 ~~V~~~~~spd-g--~~las~~~d~~i~vwd~~~ 440 (1131)
+.|.+|+|||+ + .+||.+-..+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5999998889999999986
No 452
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.18 E-value=39 Score=38.58 Aligned_cols=139 Identities=9% Similarity=0.120 Sum_probs=71.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCc
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR 488 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 488 (1131)
..+|..+.+...|.+. .|+.|| +..||..+++.+... ......+|..+.-+-.|+ +..|+.+| +++.+..|.
T Consensus 164 d~~V~aLv~D~~g~lW-vgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G~ 235 (671)
T COG3292 164 DTPVVALVFDANGRLW-VGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEGW 235 (671)
T ss_pred CccceeeeeeccCcEE-EecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhhc
Confidence 4578889998888655 466776 677787776654311 122235677777777776 66666554 666665553
Q ss_pred eeEEec--CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec---CCCceEEEEEEccCCCEEEEE
Q 001178 489 KLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---APGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 489 ~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
...... -..+.|..+.- +.. ..+..|+..|..+. ............ ..-..|.++....+|..-+..
T Consensus 236 ~~sn~~~~lp~~~I~ll~q--D~q-G~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t 307 (671)
T COG3292 236 RASNWGPMLPSGNILLLVQ--DAQ-GELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGT 307 (671)
T ss_pred cccccCCCCcchheeeeec--ccC-CCEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCCEeeec
Confidence 222111 12233433321 222 24555665555432 222222111111 112245666667777655443
No 453
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.03 E-value=4.8 Score=47.80 Aligned_cols=173 Identities=12% Similarity=0.156 Sum_probs=94.0
Q ss_pred CCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEE
Q 001178 845 DSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA 924 (1131)
Q Consensus 845 g~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 924 (1131)
+.+++++..+.|.||+......... ..++..+...| .. +...|+.+..|- ..| .|+.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~----~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PH--tIN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPS----RKPCLRFDTKP---EF--TSTPDRLISTWP----------FPH--TINFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccc----cccccccccCc---cc--cccccccccCCC----------CCc--eeeEEE
Confidence 7888888999999999865322110 01112222222 11 122333333332 112 133333
Q ss_pred Ecc--CCCEEEEEeCCCcEEEEEcCCCc--------eeee---e--eeecCCCCCCCCceEEEEc--CCCcEEEEEeC-C
Q 001178 925 FST--NLNILVSSGSDAQLIFWNTDTWE--------KRKS---I--AIQLPAGKLPVGETRVQFH--SDQVRLLVNHE-T 986 (1131)
Q Consensus 925 ~s~--dg~~l~s~~~Dg~v~lwd~~~~~--------~~~~---~--~~~~~~~~~~~~v~~v~~s--~d~~~l~~~~d-~ 986 (1131)
... +...|+.+..||.|.+|.++.-- .... . .........+..+..++++ ...+++|++++ .
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 322 34578888888888888663200 0000 0 0000111122577888998 88889999875 4
Q ss_pred eEEEEeCCCcccceeeecCCCCCCCeEEEEEccCC---C---EEEEEecCCcEEEEEC
Q 001178 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNS---Q---LIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 987 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg---~---~l~s~~~dg~i~vwd~ 1038 (1131)
.|.||-...............+...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 56666544321111111112246789999998754 2 7888999999999887
No 454
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.98 E-value=13 Score=36.92 Aligned_cols=154 Identities=12% Similarity=0.064 Sum_probs=82.9
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe----CC---eEEEE-eCCC----cc
Q 001178 930 NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH----ET---QLAIY-DGSK----ME 997 (1131)
Q Consensus 930 ~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----d~---~i~vw-d~~~----~~ 997 (1131)
..|..+...+.|.+|++...+......+... +.+..++++.-|.+|++-. .. .+|+| +++. ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-----~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-----GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-----hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence 3444445566799999994333222222211 6788999999999999832 22 56765 2211 11
Q ss_pred cce-eeecCC------------------CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCce-eeEecCCccccCCC
Q 001178 998 CIR-QWVPQD------------------VLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL-RCRIAPSAYMSQAS 1057 (1131)
Q Consensus 998 ~~~-~~~~~~------------------~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~ 1057 (1131)
.++ .+.+|. ..+.++.+++..|-..-|++|+ ++.+.+|.+..... ...+....+. ...
T Consensus 104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe-~~l 181 (215)
T PF14761_consen 104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFE-RSL 181 (215)
T ss_pred cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEech-hhh
Confidence 111 111210 1145677888888555566665 78899998754433 1111111111 111
Q ss_pred CCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1058 PNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1058 ~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
..+.....+..+++.- +++|..+ |-.+++.++.
T Consensus 182 ~~~~~~~~p~~v~ic~---~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 182 IDHIDNFKPTQVAICE---GYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred hheecCceEEEEEEEe---eEEEEec-CCEEEEEEEe
Confidence 1122334455566533 5777776 5558887764
No 455
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.79 E-value=11 Score=34.14 Aligned_cols=115 Identities=14% Similarity=0.086 Sum_probs=70.0
Q ss_pred EcCCCcEEEE-EeCCeEEEEeCCCcc--------cceeeecCCCCCCCeEEEEEcc-----CCCEEEEEecCCcEEEEEC
Q 001178 973 FHSDQVRLLV-NHETQLAIYDGSKME--------CIRQWVPQDVLSSPISSAAYSC-----NSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 973 ~s~d~~~l~~-~~d~~i~vwd~~~~~--------~~~~~~~~~~~~~~v~~i~~s~-----dg~~l~s~~~dg~i~vwd~ 1038 (1131)
|......|++ +..++|.|++..... .+..+. . +..|++++-.+ +...|+.|+ ...+..||+
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-i---n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-I---NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-C---CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3333344555 346788888765322 222222 1 56777776554 334677766 788999999
Q ss_pred CCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCccccccc
Q 001178 1039 DSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVA 1103 (1131)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w~~~ 1103 (1131)
.....+..-.. ...+..+.+.-....+.-|+..|..+.|.-||-...|..|.+.
T Consensus 81 ~~N~d~Fyke~-----------~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 81 ENNSDLFYKEV-----------PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred ccCchhhhhhC-----------ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 87665433221 2234544443333233456666668899999999999999875
No 456
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.77 E-value=1.2 Score=48.07 Aligned_cols=159 Identities=13% Similarity=0.060 Sum_probs=99.3
Q ss_pred CCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEE-EEe-CCCC----Cee-EEEEeCCCCcEEEEEeCCCcEEEE-E
Q 001178 832 AEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMT-TFM-SPPP----AST-FLAFHPQDNNIIAIGMEDSTIQIY-N 903 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~-~~~-~~~~----~i~-~l~~s~~~~~~la~g~~dg~I~iw-d 903 (1131)
....+..+-+.|||+.+.+-+..++.++++.+..... ++. ...+ .|+ ++..-. ++.-+.+++.||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 4567788899999999999888899999987654322 121 1111 122 222223 66677789999998776 4
Q ss_pred eecc-e----eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCc
Q 001178 904 VRVD-E----VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 904 ~~~~-~----~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 978 (1131)
...+ . .+..++-...++..+.--.+.+-+++-+..|++.++.....+...... .-.....+++||.+.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-------~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-------AYQAPQLVAMSPNQA 370 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-------hhcCcceeeeCcccc
Confidence 4322 1 122222222344444433345567778888888877654422211111 113567789999999
Q ss_pred EEEEEeCCeEEEEeCCCccc
Q 001178 979 RLLVNHETQLAIYDGSKMEC 998 (1131)
Q Consensus 979 ~l~~~~d~~i~vwd~~~~~~ 998 (1131)
+|++-..|.++++.+++...
T Consensus 371 ~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 371 YLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred hheeecCCceEEEEecCCCC
Confidence 99999999999998876443
No 457
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.53 E-value=30 Score=36.34 Aligned_cols=207 Identities=11% Similarity=0.104 Sum_probs=118.1
Q ss_pred CeeEEEecCCCCEEEEEe-CCeEEEEECC-------CceeEEEEeC-----CCCCeeEEEEeCCCCc------------E
Q 001178 835 VVPCVALSKNDSYVMSAG-GGKVSLFNMM-------NFKVMTTFMS-----PPPASTFLAFHPQDNN------------I 889 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~-dg~i~vwd~~-------~~~~~~~~~~-----~~~~i~~l~~s~~~~~------------~ 889 (1131)
.-+.|+++|.+.+-++.. .+...+||.. ...++.++.. .....+.+.|.. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 357899999887666655 5889999986 1223334432 124577787774 222 2
Q ss_pred EEEEeCCCcEEEEEeeccee-----EEeec-ccccCe-eEEEEccC--CCEE-EEEeCCCcEEEEEcCCCceeeeeeeec
Q 001178 890 IAIGMEDSTIQIYNVRVDEV-----KTKLK-GHQKHI-TGLAFSTN--LNIL-VSSGSDAQLIFWNTDTWEKRKSIAIQL 959 (1131)
Q Consensus 890 la~g~~dg~I~iwd~~~~~~-----~~~~~-~h~~~V-~~l~~s~d--g~~l-~s~~~Dg~v~lwd~~~~~~~~~~~~~~ 959 (1131)
++.+++||+|.=|...-+.. ...+. ...+.| ..+++... +.+| ++--..++|.++|-.-.....
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~------ 176 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL------ 176 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC------
Confidence 45678999999998532211 11221 112333 34565533 3444 444457889999765422110
Q ss_pred CCCCCCCCceEEEEcC------CCcEEEE-E-------------eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEcc
Q 001178 960 PAGKLPVGETRVQFHS------DQVRLLV-N-------------HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC 1019 (1131)
Q Consensus 960 ~~~~~~~~v~~v~~s~------d~~~l~~-~-------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~ 1019 (1131)
.+....+-.-.-|.| .+++.++ . .-|.|-+||.. |..++++... ..-..-+.|+..|
T Consensus 177 -~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-g~LNaPWG~a~AP 253 (336)
T TIGR03118 177 -PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-GRLNAPWGLAIAP 253 (336)
T ss_pred -CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC-CcccCCceeeeCh
Confidence 011101101111222 1222222 1 12468889876 6666666332 2244567788765
Q ss_pred ------CCCEEEEEecCCcEEEEECCCCceeeEecCCc
Q 001178 1020 ------NSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 1020 ------dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
.|.+|+----||+|..||..+|+.+..+....
T Consensus 254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred hhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCC
Confidence 56777776789999999999999888887543
No 458
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.42 E-value=30 Score=39.49 Aligned_cols=277 Identities=16% Similarity=0.095 Sum_probs=133.6
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
+.....|..+.|.-.|. +-+|+.|| +..||..+++.+... ......+|..+.-+-.|+
T Consensus 161 ll~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~------------------s~~~dk~I~al~~d~qg~- 218 (671)
T COG3292 161 LLKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLA------------------SPPLDKAINALIADVQGR- 218 (671)
T ss_pred cccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcC------------------CCcchhhHHHHHHHhcCc-
Confidence 34677899999999996 55676665 566777777655421 011124566665555555
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEE-ecCCc--cCe
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHE--APV 500 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~h~--~~v 500 (1131)
|-+|+.+| |.+.+.++.+..... ..--.+.|..+.=..+|. +-.|+..|-.+.=-..+..... .+-|. ..|
T Consensus 219 LWVGTdqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~v 292 (671)
T COG3292 219 LWVGTDQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTV 292 (671)
T ss_pred EEEEeccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeecccceeEecCCCCccccccccCCccccc
Confidence 44566666 777776652211100 000122333333333333 3334433322111112221111 11121 233
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc--CCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA--DGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
.++.. +.+| -+.+++.+|.+++-+-+-..........+..+...+..| .+..+-... ..+.+.+-+-.+|.
T Consensus 293 nsL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~ 365 (671)
T COG3292 293 NSLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGE 365 (671)
T ss_pred cceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCc
Confidence 44432 2332 456666666665543221111111111111122222222 111111111 13445566667777
Q ss_pred eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC-CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001178 579 LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1131)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~ 657 (1131)
.++....-....++.+++.. +..+-.++...-+..|+..+ +........ -....|..+.-.|+++ |..|+.+|.++
T Consensus 366 ~v~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~ag-l~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 366 LVRSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAG-LPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred EEEEeeeccccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccC-CcccceeeeeecCCCC-EEEeccCCeEe
Confidence 77776555555677777877 44566666664566676665 322222222 2233677787788887 77788887655
Q ss_pred E
Q 001178 658 I 658 (1131)
Q Consensus 658 i 658 (1131)
.
T Consensus 443 ~ 443 (671)
T COG3292 443 R 443 (671)
T ss_pred c
Confidence 3
No 459
>PLN02153 epithiospecifier protein
Probab=89.31 E-value=33 Score=38.06 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=15.3
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCc
Q 001178 928 NLNILVSSGSD-----AQLIFWNTDTWE 950 (1131)
Q Consensus 928 dg~~l~s~~~D-----g~v~lwd~~~~~ 950 (1131)
++++++.||.+ ..+.+||+.+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 46677777754 247788887644
No 460
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.86 E-value=5.1 Score=43.68 Aligned_cols=115 Identities=11% Similarity=0.120 Sum_probs=77.3
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
..++|.++.||+|.+ ++|+--.+++|.+.+....+....... ..+..+..|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ---------------ECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH---------------HhccCcceeEEEEEecC-eeEE
Confidence 456999999999998 799999999999999854333221000 12234556999999976 5666
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcE
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 480 (1131)
..+..| +.+|-+...+ +.......|...|.-..|+++.+-.+++|+-..+++
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~l 179 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVL 179 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeecccccccc
Confidence 666555 7788776543 222234678888999999999885333333234333
No 461
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=88.73 E-value=39 Score=36.61 Aligned_cols=210 Identities=10% Similarity=-0.016 Sum_probs=103.3
Q ss_pred CCCCeeEEEecCCCCEEEEEeCCe--EEEEECCCceeE---------------EEEeCCCCCeeEEEEeCCCCcEEEEEe
Q 001178 832 AEDVVPCVALSKNDSYVMSAGGGK--VSLFNMMNFKVM---------------TTFMSPPPASTFLAFHPQDNNIIAIGM 894 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~dg~--i~vwd~~~~~~~---------------~~~~~~~~~i~~l~~s~~~~~~la~g~ 894 (1131)
+...|.++...+.-+.|++-+++. ++++++...... .....+................++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 567899999999999988888766 999998543310 111123333344444431222333444
Q ss_pred CCCcEEEEEeecc----eeEEee---c-ccccCeeEEEEccC--CCEEEEEeCCCcEEEEEcCC--CceeeeeeeecCCC
Q 001178 895 EDSTIQIYNVRVD----EVKTKL---K-GHQKHITGLAFSTN--LNILVSSGSDAQLIFWNTDT--WEKRKSIAIQLPAG 962 (1131)
Q Consensus 895 ~dg~I~iwd~~~~----~~~~~~---~-~h~~~V~~l~~s~d--g~~l~s~~~Dg~v~lwd~~~--~~~~~~~~~~~~~~ 962 (1131)
...+|.++..... .....+ . .-..++..+..+++ ...++.|+..+...++++.. ....... ......
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~s-l~~~~~ 199 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLS-LPFLSE 199 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccc-cccccc
Confidence 5566777654322 111110 0 11233444444433 44666666542344555532 1100000 000000
Q ss_pred CCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceee-ecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 001178 963 KLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQW-VPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1131)
Q Consensus 963 ~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~ 1041 (1131)
.......++..-+++.+|++-++..+.+ |....+..+.. ... .....++++. ..||++-. ++.|.|+++.++
T Consensus 200 ~~~~~p~~i~~l~~~e~Llc~~~~~v~V-n~~G~~~~r~~~l~w---~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 200 ETSLKPISVVQVPRDEFLLCYDEFGVFV-NLYGKRRSRNPILHW---EFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred ccccCceEEEEECCCeEEEEECcEEEEE-eCCCCccccceEEEc---CCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence 0000233344445566666544444433 33321221111 111 4456677776 45666665 667999999999
Q ss_pred ceeeEecC
Q 001178 1042 RLRCRIAP 1049 (1131)
Q Consensus 1042 ~~~~~~~~ 1049 (1131)
+.+..+..
T Consensus 273 ~l~q~i~~ 280 (302)
T smart00036 273 ELLQELAD 280 (302)
T ss_pred ceEEEEec
Confidence 98777753
No 462
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.61 E-value=29 Score=41.00 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=57.1
Q ss_pred EEEccCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcc
Q 001178 923 LAFSTNLNILVSSGSDA-----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKME 997 (1131)
Q Consensus 923 l~~s~dg~~l~s~~~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~ 997 (1131)
+.|-|.|..++|-+.|| .|+++..+.-+ .... .. .......+..++|.-....++++..+.+.+|-..+..
T Consensus 252 LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr--HGef-~l-r~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyh 327 (1243)
T COG5290 252 LSWKPQGSKYATIGTDGCSTSESVIFFERNGLR--HGEF-DL-RVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYH 327 (1243)
T ss_pred cccccCCceeeeeccCCCCCcceEEEEccCCcc--cCCc-cc-cCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceE
Confidence 78999999999988765 36666654411 1110 00 0011134556677766667777788899999988765
Q ss_pred cceeeecCCCCCCCeEEEEEccCCC
Q 001178 998 CIRQWVPQDVLSSPISSAAYSCNSQ 1022 (1131)
Q Consensus 998 ~~~~~~~~~~~~~~v~~i~~s~dg~ 1022 (1131)
........ -..+.-+.|.|...
T Consensus 328 WYLK~e~~---ip~~s~vkwhpe~~ 349 (1243)
T COG5290 328 WYLKVERQ---IPGISYVKWHPEEK 349 (1243)
T ss_pred EEEEEeec---CCCcceeeeccccC
Confidence 54443333 33566677877543
No 463
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.52 E-value=23 Score=44.52 Aligned_cols=148 Identities=11% Similarity=0.228 Sum_probs=94.0
Q ss_pred EeCCCcEEEEEeecceeEEeecccccCeeEEEEc--------cCCCEEEEEeCCCcEEEEEcCCCceeeeeeee---cCC
Q 001178 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFS--------TNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ---LPA 961 (1131)
Q Consensus 893 g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s--------~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~---~~~ 961 (1131)
.+-|..+.+|+.+++.....+.+-...|..|..- |.=++|...+.--.|.++-+.-.+........ ...
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 3457889999999877677777766677776542 23344444455555777655433221111110 001
Q ss_pred CCCCCCceEEEEcCCCcEEEEEeCCeEE--EEeCCCc---c-cc-------------eeeecC-CCCCCCeEEEEEccCC
Q 001178 962 GKLPVGETRVQFHSDQVRLLVNHETQLA--IYDGSKM---E-CI-------------RQWVPQ-DVLSSPISSAAYSCNS 1021 (1131)
Q Consensus 962 ~~~~~~v~~v~~s~d~~~l~~~~d~~i~--vwd~~~~---~-~~-------------~~~~~~-~~~~~~v~~i~~s~dg 1021 (1131)
...+..+.++....+|+.+.+|.||.++ +|...++ + +- ..+... ..+..+|..+++...-
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 1223678889989999999999999766 3333321 1 10 111111 1336799999999888
Q ss_pred CEEEEEecCCcEEEEECCC
Q 001178 1022 QLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 1022 ~~l~s~~~dg~i~vwd~~~ 1040 (1131)
..|.+-++.|+|++|++..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999976
No 464
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.50 E-value=44 Score=36.93 Aligned_cols=188 Identities=15% Similarity=0.177 Sum_probs=104.0
Q ss_pred EEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEeecc--cCCccE--EEEEe-cC---CeEEEEeCCCCce-eEEecC-
Q 001178 470 CIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQ--KENIHF--IFSTA-VD---GKIKAWLYDNVGS-RVDYDA- 539 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~--l~s~s-~d---g~i~~wd~~~~~~-~~~~~~- 539 (1131)
+++...+++-+.+||+.|+.+..+. .+.++.+.+.. .-+++. |+.++ .+ .+|++|.++.... ...+..
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~ 147 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDP 147 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBT
T ss_pred eEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCC
Confidence 6788888899999999999998885 24455444311 112222 33443 32 5799998764322 222221
Q ss_pred ------CCceEEEEEE--cc-CCCEEEEEeecCCCCceEEEEeCC---CC----eeeEEEecccCCceEEEEEeCCCCEE
Q 001178 540 ------PGLWCTTMLY--SA-DGSRLFSCGTSKEGDSHLVEWNES---EG----ALKRTYIGFRKKSAGVVQFDTTRNRI 603 (1131)
Q Consensus 540 ------~~~~v~~~~~--s~-~g~~l~~~~~~~~~~~~i~iwd~~---~~----~~~~~~~~~~~~~v~~~~~s~~~~~l 603 (1131)
.-..+..+++ ++ +|.+.+.... .+|.+..|.+. .+ ++++.|.... .+..+.......+|
T Consensus 148 ~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~L 222 (381)
T PF02333_consen 148 AAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRL 222 (381)
T ss_dssp TC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEE
T ss_pred CcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCE
Confidence 1123566666 33 4665555442 25666666543 33 4677777533 67888888888899
Q ss_pred EEEEcCCcEEEEEcCCC-----eEEEEEeccCCCCCcceEEEc--CCC-CEE-EEEECCCcEEEEecCCC
Q 001178 604 LAAGEDNQIKFWDMDNV-----NMLTSTEAEGGLPSLPRLRFN--KEG-NLL-VVTTADQGIKILANADG 664 (1131)
Q Consensus 604 ~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~i~~v~~s--p~~-~~l-~~~~~dg~i~iw~~~~~ 664 (1131)
+.+-++.-|.-|+.+.. ..+.......-...|-.++.- +++ .+| ++.-.+++..+|+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999988888887632 222222222222356666663 333 344 44445778999997543
No 465
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.42 E-value=24 Score=35.18 Aligned_cols=147 Identities=10% Similarity=0.081 Sum_probs=87.2
Q ss_pred cEEEEEeCCCcEEEEEee--cceeEEeecccccCeeEEEEccCCCEEEEEeCC---C---cEEEE---EcCCC--ceeee
Q 001178 888 NIIAIGMEDSTIQIYNVR--VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD---A---QLIFW---NTDTW--EKRKS 954 (1131)
Q Consensus 888 ~~la~g~~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D---g---~v~lw---d~~~~--~~~~~ 954 (1131)
..|..+.....|.+|++. ..+.+..+..- +.|..+.++..|++|+|--.+ . .+|+| +.... .....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444667789999988 33556666644 889999999999999986442 2 45554 33211 11110
Q ss_pred ee----------------eecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCccc-ce-----eeecC---CCCC
Q 001178 955 IA----------------IQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMEC-IR-----QWVPQ---DVLS 1009 (1131)
Q Consensus 955 ~~----------------~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~-~~-----~~~~~---~~~~ 1009 (1131)
.. +.+..-....+..+++..|-..-|++|.++.+.+|.+..... .. .+... ...+
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 00 000011112467788888888888999999999998764433 11 11110 0002
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 001178 1010 SPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 1010 ~~v~~i~~s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
-....++|. +.|+|..+ +-.+++..+
T Consensus 188 ~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 188 FKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred ceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 334556654 66888876 667777664
No 466
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.39 E-value=20 Score=41.72 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCeEEEEecCCcEEEEecCCCccccccccCCC
Q 001178 1067 LVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVD 1107 (1131)
Q Consensus 1067 ~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w~~~~p~~ 1107 (1131)
-++.+.+.++.+++|+=.-..|...|..+++-+|.+..|..
T Consensus 274 Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~ 314 (477)
T PF05935_consen 274 NSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGG 314 (477)
T ss_dssp EEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT
T ss_pred CccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCC
Confidence 36778886666666655555888899889999999999876
No 467
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.25 E-value=1.6 Score=30.05 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=23.4
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCC--CeEEEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGD--GEITLW 375 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~d--g~v~iw 375 (1131)
.....-.+.+|||||++++.+...+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4556788999999999988888777 776666
No 468
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.97 E-value=6.3 Score=49.22 Aligned_cols=166 Identities=14% Similarity=0.188 Sum_probs=96.3
Q ss_pred ccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 337 PRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 337 ~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
|.+++..+.|...=+.+-+-|.=.+.-+ +.|+.+.+|+.+++.... .+.+-+..|..+.
T Consensus 68 P~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~-------------------~~d~~shtIl~V~ 126 (1311)
T KOG1900|consen 68 PDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELA-------------------EYDGLSHTILKVG 126 (1311)
T ss_pred CHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCccc-------------------cccchhhhheeee
Confidence 4444445556666666777776444333 458899999999855433 2334444555544
Q ss_pred E--------cCCCCEEEEEeCCCeEEEEEecCCCccc------eeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001178 417 W--------SPDGNFIGVAFTKHLIHLYTYQGSNDLC------QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1131)
Q Consensus 417 ~--------spdg~~las~~~d~~i~vwd~~~~~~~~------~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 482 (1131)
. -|.=++|...+.--.|.++-+.-.+... ...++....-.|+|+....+|+ .+++| .|| .+
T Consensus 127 LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~G-~dg--~l 201 (1311)
T KOG1900|consen 127 LVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFAG-RDG--NL 201 (1311)
T ss_pred eecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEee-cCC--CE
Confidence 3 3333444444444557776654322111 1112223345689999888888 45554 555 44
Q ss_pred Ee-----CC---Cc-e----------------eEEec-CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCC
Q 001178 483 WD-----LS---GR-K----------------LFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN 530 (1131)
Q Consensus 483 wd-----~~---~~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~ 530 (1131)
|. .+ ++ + +..+. .+..+|..+.+.. ...++++-+..|+|.+|++..
T Consensus 202 yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 202 YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 44 11 11 0 11223 5677899998854 346889999999999999875
No 469
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.92 E-value=9.8 Score=41.47 Aligned_cols=162 Identities=15% Similarity=0.124 Sum_probs=92.7
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCee-EEEecCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVP-CVALSKN 844 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~-~l~~s~d 844 (1131)
....+..+...|||+.+...+. ..+.++++........ ++-+...| .....|+ .+.+-..
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r---------kl~~dspg---------~~~~~Vte~l~lL~G 279 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR---------KLVDDSPG---------DSRHQVTEQLYLLSG 279 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh---------hhhhcCCC---------chHHHHHHHHHHHhC
Confidence 4466778889999999988776 5677777654322111 01111111 0111121 1222334
Q ss_pred CCEEEEEe-CCeEEEE-ECCCc-----eeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccc
Q 001178 845 DSYVMSAG-GGKVSLF-NMMNF-----KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ 917 (1131)
Q Consensus 845 g~~la~~~-dg~i~vw-d~~~~-----~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~ 917 (1131)
|.-+.+++ ||.|.-| |.... ..++.++-...++..+.--. +.+-+++-+.+|++.++.....+.+..-. --
T Consensus 280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~ 357 (733)
T COG4590 280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER-AY 357 (733)
T ss_pred ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh-hh
Confidence 55555555 7776666 44321 23344443334455444433 56677788899999888765554433222 22
Q ss_pred cCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001178 918 KHITGLAFSTNLNILVSSGSDAQLIFWNTDTW 949 (1131)
Q Consensus 918 ~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~ 949 (1131)
..+.-+++||.+.+|++-. .|.++++.+++.
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred cCcceeeeCcccchheeec-CCceEEEEecCC
Confidence 3567789999999998754 456888888764
No 470
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=87.72 E-value=37 Score=44.11 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=50.6
Q ss_pred ccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEe
Q 001178 917 QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYD 992 (1131)
Q Consensus 917 ~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd 992 (1131)
...|++++.-.+ +.+++....|.+.... ..+. +...........|..++......+.|...+|.++--+
T Consensus 702 ~~~i~a~Avv~~-~~fvald~qg~lt~h~-k~g~-----p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~ 770 (1774)
T PF11725_consen 702 DRVITAFAVVND-NKFVALDDQGDLTAHQ-KPGR-----PVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLP 770 (1774)
T ss_pred cCcceeEEEEcC-CceEEeccCCcccccc-CCCC-----CccCCCCCCCcchhheeeccccceeEecCCCceeecC
Confidence 456888888755 5667778889899888 5544 3334444455889999999999988888888887543
No 471
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.53 E-value=51 Score=36.50 Aligned_cols=198 Identities=11% Similarity=0.176 Sum_probs=104.8
Q ss_pred CCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeC---CCCcE--EEEEe-CC---CcEEEEEeec--ceeE
Q 001178 843 KNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHP---QDNNI--IAIGM-ED---STIQIYNVRV--DEVK 910 (1131)
Q Consensus 843 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~---~~~~~--la~g~-~d---g~I~iwd~~~--~~~~ 910 (1131)
|...+|+... .+-+.+||+... .++.+. .++...+..-. -+++. ||+++ .+ .+|++|.+.. +. +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 3444555555 678999999765 444443 24444444321 02322 34443 32 4699998873 43 2
Q ss_pred Eeecc-------cccCeeEEEE--cc-CCC-EEEEEeCCCcEEEEEcCC---CceeeeeeeecCCCCCCCCceEEEEcCC
Q 001178 911 TKLKG-------HQKHITGLAF--ST-NLN-ILVSSGSDAQLIFWNTDT---WEKRKSIAIQLPAGKLPVGETRVQFHSD 976 (1131)
Q Consensus 911 ~~~~~-------h~~~V~~l~~--s~-dg~-~l~s~~~Dg~v~lwd~~~---~~~~~~~~~~~~~~~~~~~v~~v~~s~d 976 (1131)
..+.. -...+..+++ ++ +|. +.+..+.+|.+..|.+.. +........... ..+.+..++....
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~---~~sQ~EGCVVDDe 218 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK---VGSQPEGCVVDDE 218 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETT
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec---CCCcceEEEEecc
Confidence 33221 1124667776 33 455 566677889998888753 222112222211 1257888889998
Q ss_pred CcEEEEEe-CCeEEEEeCCC-----cccceeeecCCCCCCCeEEEEEcc--CCC-EEEEEe-cCCcEEEEECCC-Cceee
Q 001178 977 QVRLLVNH-ETQLAIYDGSK-----MECIRQWVPQDVLSSPISSAAYSC--NSQ-LIYATF-TDGSIGVFDADS-LRLRC 1045 (1131)
Q Consensus 977 ~~~l~~~~-d~~i~vwd~~~-----~~~~~~~~~~~~~~~~v~~i~~s~--dg~-~l~s~~-~dg~i~vwd~~~-~~~~~ 1045 (1131)
..+|.++. +..|.-|+.+- +..+.... .......|-.+++-. +++ ||++.+ .+++..||+.+. ...+.
T Consensus 219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g 297 (381)
T PF02333_consen 219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVG 297 (381)
T ss_dssp TTEEEEEETTTEEEEEESSCCC-S--EEEEEBS-SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEE
T ss_pred cCCEEEecCccEEEEEecCCCCCCcceeeeccc-ccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccc
Confidence 88888886 66788888762 22222211 122356788888753 443 666666 567899999875 34344
Q ss_pred Eec
Q 001178 1046 RIA 1048 (1131)
Q Consensus 1046 ~~~ 1048 (1131)
.+.
T Consensus 298 ~f~ 300 (381)
T PF02333_consen 298 SFR 300 (381)
T ss_dssp EEE
T ss_pred eEE
Confidence 443
No 472
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.25 E-value=3.6 Score=40.31 Aligned_cols=31 Identities=32% Similarity=0.570 Sum_probs=25.6
Q ss_pred CCEEEEEEcCCC------CEEEEEeCCCeEEEEEecC
Q 001178 410 ISVSRVAWSPDG------NFIGVAFTKHLIHLYTYQG 440 (1131)
Q Consensus 410 ~~V~~~~~spdg------~~las~~~d~~i~vwd~~~ 440 (1131)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999944 3788889999999998664
No 473
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.14 E-value=2.5 Score=43.04 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=51.6
Q ss_pred EccCCCEEEEEeCCCcEEEEEcCCCceeeee-e-eecCCC------CCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCc
Q 001178 925 FSTNLNILVSSGSDAQLIFWNTDTWEKRKSI-A-IQLPAG------KLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKM 996 (1131)
Q Consensus 925 ~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~-~-~~~~~~------~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~ 996 (1131)
+..++.+|++.+.+|.+++||+.+.+..... . ...... .....|..+.++.+|.-+++-++|..+.|+.+-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4456889999999999999999997754433 1 111111 2336788888888888888878888888886633
No 474
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.29 E-value=24 Score=42.29 Aligned_cols=110 Identities=11% Similarity=0.225 Sum_probs=71.4
Q ss_pred CeeEEEec--CCCCEEEEEe-CCeEEEEECCC-------c----e---------eEEEEeCCCCCeeEEEEe--CCCCcE
Q 001178 835 VVPCVALS--KNDSYVMSAG-GGKVSLFNMMN-------F----K---------VMTTFMSPPPASTFLAFH--PQDNNI 889 (1131)
Q Consensus 835 ~i~~l~~s--~dg~~la~~~-dg~i~vwd~~~-------~----~---------~~~~~~~~~~~i~~l~~s--~~~~~~ 889 (1131)
.|..|... -+...|+.+. ||.|.+|.+++ . . +...+. ....+..++++ . ..++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceE
Confidence 34444433 3445666665 79999997642 1 0 111111 23467889998 6 7889
Q ss_pred EEEEeCCCcEEEEEeecc--eeE-EeecccccCeeEEEEccCC---C---EEEEEeCCCcEEEEEc
Q 001178 890 IAIGMEDSTIQIYNVRVD--EVK-TKLKGHQKHITGLAFSTNL---N---ILVSSGSDAQLIFWNT 946 (1131)
Q Consensus 890 la~g~~dg~I~iwd~~~~--~~~-~~~~~h~~~V~~l~~s~dg---~---~l~s~~~Dg~v~lwd~ 946 (1131)
||+++....|.||-.... +.. ..-..|...|-+|+|-++. . .|++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999999998888876542 111 1111366679999997753 2 7888999999999888
No 475
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.14 E-value=13 Score=41.32 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=89.4
Q ss_pred CCcEEE-EEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCC--------CEEEEEeCCCcEEEEEcCC-Cceeeee
Q 001178 886 DNNIIA-IGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL--------NILVSSGSDAQLIFWNTDT-WEKRKSI 955 (1131)
Q Consensus 886 ~~~~la-~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg--------~~l~s~~~Dg~v~lwd~~~-~~~~~~~ 955 (1131)
+..+|. .|.....++-.|++.|+.+..+.-|..- -+.|.|+. +.|+-.+..+ |.--|..- +......
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc-eEEecccccCCceeee
Confidence 455444 4555567888889999999999988764 57777753 3455444443 33333322 2111111
Q ss_pred eeecCCCCCCCCceEEEEcCCCcEEEE-EeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001178 956 AIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIG 1034 (1131)
Q Consensus 956 ~~~~~~~~~~~~v~~v~~s~d~~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~ 1034 (1131)
... .-.......+..-...| ++|+ +..|.|++||--.-+....+.+. ...|..+..+.+|+++++.+ ..++.
T Consensus 555 esK--dY~tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~l---G~aIk~idvta~Gk~ilaTC-k~yll 627 (776)
T COG5167 555 ESK--DYKTKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGL---GDAIKHIDVTANGKHILATC-KNYLL 627 (776)
T ss_pred eeh--hccccccccccccccCc-eEEEecCCCceeeehhhcchhhhcCccc---ccceeeeEeecCCcEEEEee-cceEE
Confidence 111 11111223333333444 5555 55789999996544444444443 67899999999999988877 56777
Q ss_pred EEECC--CCceeeEe
Q 001178 1035 VFDAD--SLRLRCRI 1047 (1131)
Q Consensus 1035 vwd~~--~~~~~~~~ 1047 (1131)
+-|+. .|+...++
T Consensus 628 L~d~~ik~g~~aGr~ 642 (776)
T COG5167 628 LTDVPIKYGQPAGRD 642 (776)
T ss_pred EEecccccCCccccc
Confidence 77765 34444443
No 476
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.13 E-value=69 Score=36.64 Aligned_cols=110 Identities=20% Similarity=0.216 Sum_probs=61.2
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce--eEEeec-----ccccCeeEEEEccCC------CEEEEEe----
Q 001178 874 PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE--VKTKLK-----GHQKHITGLAFSTNL------NILVSSG---- 936 (1131)
Q Consensus 874 ~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~--~~~~~~-----~h~~~V~~l~~s~dg------~~l~s~~---- 936 (1131)
-.....|+|.| |+++|++--..|.|++++..++. .+..+. .-.+....|+|+|+- .+|....
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 34578899999 88877755546999999765442 222111 125668999999884 2333221
Q ss_pred ------CCCcEEEEEcCCC--ce--eeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeC
Q 001178 937 ------SDAQLIFWNTDTW--EK--RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHE 985 (1131)
Q Consensus 937 ------~Dg~v~lwd~~~~--~~--~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d 985 (1131)
....|.-|.+... .. ........+... ...-..++|.|||.+.++..|
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~-~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGN-DHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCC-CcCCceEEECCCCcEEEEECC
Confidence 1234555555421 11 111111222111 134568889999987665433
No 477
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.91 E-value=16 Score=35.68 Aligned_cols=110 Identities=8% Similarity=-0.008 Sum_probs=62.8
Q ss_pred CccEEEEEecC--CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc
Q 001178 510 NIHFIFSTAVD--GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR 587 (1131)
Q Consensus 510 ~~~~l~s~s~d--g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 587 (1131)
++.++.+.+.- ..|++||+++++...........+..--...-|.++..-.. .++.-..+|..+.+.+..+.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence 44666666654 47999999988777654433212211111122333333222 27788889988887776665322
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEE
Q 001178 588 KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST 626 (1131)
Q Consensus 588 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1131)
.-..+ ..|+..++.+....+++.-|.++.....++
T Consensus 132 --eGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v 166 (262)
T COG3823 132 --EGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTV 166 (262)
T ss_pred --cceee--ecCCcceEeeCCceEEEecCHHHhhhcceE
Confidence 22333 335666777766677887787765544443
No 478
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.89 E-value=53 Score=36.14 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=88.7
Q ss_pred CccceEEEEeecCCceEEEeeecce------eeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEE
Q 001178 766 SASKVARLLYTNSGIGILALWSNGV------QKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~------i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l 839 (1131)
.-+.+..+.+.+++..+++.+++|. +..+++...... ...........+-+.. |.... ...-...+|
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~-G~~~~-----~~~~D~Egi 90 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGG-IGGVTILDMIPLRDPD-GQPFP-----KNGLDPEGI 90 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCC-ccceEeccceeccCCC-CCcCC-----cCCCChhHe
Confidence 3466778999977777888888877 544444431111 1111111111111211 11111 112255678
Q ss_pred EecCCCCEEEEEe-C------CeEEEEECCCceeEEEEeC---------------CCCCeeEEEEeCCCCcEEEEEeCC-
Q 001178 840 ALSKNDSYVMSAG-G------GKVSLFNMMNFKVMTTFMS---------------PPPASTFLAFHPQDNNIIAIGMED- 896 (1131)
Q Consensus 840 ~~s~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~---------------~~~~i~~l~~s~~~~~~la~g~~d- 896 (1131)
++.++|.++++.. + ..|..++.. |+.+..+.. .+...-+++++| +++.|.++.+.
T Consensus 91 ~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~ 168 (326)
T PF13449_consen 91 AVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESP 168 (326)
T ss_pred EEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECcc
Confidence 8888888887776 5 568888876 655554421 234578999999 77755544332
Q ss_pred ----C--c-------EEEEEee--c-cee----EEeecc-----cccCeeEEEEccCCCEEEE
Q 001178 897 ----S--T-------IQIYNVR--V-DEV----KTKLKG-----HQKHITGLAFSTNLNILVS 934 (1131)
Q Consensus 897 ----g--~-------I~iwd~~--~-~~~----~~~~~~-----h~~~V~~l~~s~dg~~l~s 934 (1131)
+ . ++++... + ++. ...+.. ....|+.+.+-+++++|+-
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 2 1 5555444 3 222 222222 3467888999989887664
No 479
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.80 E-value=36 Score=37.55 Aligned_cols=122 Identities=11% Similarity=0.100 Sum_probs=78.1
Q ss_pred ccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCC
Q 001178 915 GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGS 994 (1131)
Q Consensus 915 ~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~ 994 (1131)
...|+|.++.||+|.+.||+--.|.+|.+.+....+...........+ ...+....|+.. .-+|.-.+..+.+|...
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k--~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK--NANILGFCWTSS-TEIAFITDQGIEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC--cceeEEEEEecC-eeEEEEecCCeEEEEEc
Confidence 456799999999999999999999999999985533221111111111 134777888776 55666677778888765
Q ss_pred Cc-ccceeeecCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECCCCc
Q 001178 995 KM-ECIRQWVPQDVLSSPISSAAYSCNSQLIYATF--TDGSIGVFDADSLR 1042 (1131)
Q Consensus 995 ~~-~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~--~dg~i~vwd~~~~~ 1042 (1131)
.. +.++....+ +..|.-..|.++.+.++.++ ..+++.=+.+.++.
T Consensus 141 pekrslRlVks~---~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 141 PEKRSLRLVKSH---NLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhhhc---ccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 32 233333333 77888888999888544433 44555555555443
No 480
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.34 E-value=1.1e+02 Score=38.07 Aligned_cols=104 Identities=12% Similarity=0.168 Sum_probs=66.3
Q ss_pred EEecCCCCEEEEEeCCeEEEEECCCceeEEEEe--CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEee--cceeEEeec
Q 001178 839 VALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFM--SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR--VDEVKTKLK 914 (1131)
Q Consensus 839 l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~--~~~~~~~~~ 914 (1131)
.|+.|-..++.+|-+..+++||+...++++... .-...|+.+++ .+..+++|+..-.|.++..+ ..+. ..+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l-~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQL-IVFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeE-EEEe
Confidence 456677778888889999999998877766543 23456777777 45677778766666555444 3333 3332
Q ss_pred c--cccCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001178 915 G--HQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 915 ~--h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
. -...|+++.+- |...+|.+..=|.+.+-.+.
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 2 22346766665 44567766666666555543
No 481
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.25 E-value=54 Score=33.81 Aligned_cols=196 Identities=10% Similarity=-0.045 Sum_probs=106.2
Q ss_pred eEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee-E
Q 001178 458 NDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-V 535 (1131)
Q Consensus 458 ~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~ 535 (1131)
..++-.|||. .-+++...+.|--.| .+|+....--+....-..+... +|+..-++-+.. .|.-.|-++.+.. +
T Consensus 65 ~dvapapdG~--VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~g--pdg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 65 FDVAPAPDGA--VWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVG--PDGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred cccccCCCCc--eEEecCccccceecCCCCCceEEEecCCCCCCceEEEC--CCCCeeEecCcc-eeEEecCcccceEEe
Confidence 4566667776 556666666666666 6665544433333333344332 233333332222 2222333222211 1
Q ss_pred Ee--cCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEE
Q 001178 536 DY--DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1131)
Q Consensus 536 ~~--~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 613 (1131)
.+ ...........|.+.|++-+++..+- -| -.|.. ...+..|....+..-..+|..|+|..-++.-.++.|-
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~--yG---rLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGA--YG---RLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeecccc--ce---ecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceE
Confidence 11 12233567888999999888875311 11 11221 2234455544555667788999998877776777777
Q ss_pred EEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
..|..++.................+.-+|.|+.-++....+.+..+|..+.
T Consensus 214 ridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 214 RIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred EcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 777766633222222221123455666778888888777778877776543
No 482
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=83.63 E-value=2.9 Score=38.76 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=44.6
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccc
Q 001178 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRE 126 (1131)
Q Consensus 67 ~~~~~~~~~i~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~ 126 (1131)
++.. ++|.|+-+.||||+..|..++|..++++--.-+.....+++++|+.+....++.+
T Consensus 25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~ 83 (133)
T cd08044 25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKE 83 (133)
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhh
Confidence 4444 9999999999999999999999999986544443335577778876666554443
No 483
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=82.89 E-value=17 Score=40.40 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=80.0
Q ss_pred EEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCC--------CEEEEEeecCCCCceEEEEeCCC-CeeeEEEe--
Q 001178 516 STAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG--------SRLFSCGTSKEGDSHLVEWNESE-GALKRTYI-- 584 (1131)
Q Consensus 516 s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g--------~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~-- 584 (1131)
.|+....++--|++.++.+-.+..+... -+.|.|+. ..|+-.+ +..|.-.|.+- |..+....
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-----~~svFrIDPR~~gNKi~v~esK 557 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-----DYSVFRIDPRARGNKIKVVESK 557 (776)
T ss_pred cCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-----ccceEEecccccCCceeeeeeh
Confidence 4455556666677777766666666553 46677643 3344443 44555556542 32222111
Q ss_pred ccc-CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 585 GFR-KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 585 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
... .....+. ......++++++..|.|++||.-..+....++.-+. .|..+..+.+|.++++.+.. .+.+-|+
T Consensus 558 dY~tKn~Fss~-~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idvta~Gk~ilaTCk~-yllL~d~ 631 (776)
T COG5167 558 DYKTKNKFSSG-MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDVTANGKHILATCKN-YLLLTDV 631 (776)
T ss_pred hcccccccccc-ccccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEeecCCcEEEEeecc-eEEEEec
Confidence 110 1112222 233457999999999999999765444444444444 78899999999998877654 5666665
No 484
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.72 E-value=52 Score=40.61 Aligned_cols=251 Identities=13% Similarity=0.053 Sum_probs=116.2
Q ss_pred EEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe
Q 001178 773 LLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG 852 (1131)
Q Consensus 773 l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 852 (1131)
.++..-|..+.+|+.+|.+.+|.+........... . .++-.. ... -+..+|..+...+.-.++.+-+
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~--------~~~~~~-~~~---~~kk~i~~l~~~~~~~~ll~l~ 86 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-V--------TETVKF-EKE---FSKKPINKLLVCASLELLLILS 86 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-h--------cchhHH-hhh---hccchhHHHhhcchhcchheec
Confidence 34455688899999999999998866432211110 0 000000 000 1256777777777777788888
Q ss_pred CCeEEEEECCCceeEEEEeCCCCCeeEEEEe--CC-CC--cEEEEEe-CCCcE-EEEEeecceeEEeecccccCeeEEEE
Q 001178 853 GGKVSLFNMMNFKVMTTFMSPPPASTFLAFH--PQ-DN--NIIAIGM-EDSTI-QIYNVRVDEVKTKLKGHQKHITGLAF 925 (1131)
Q Consensus 853 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s--~~-~~--~~la~g~-~dg~I-~iwd~~~~~~~~~~~~h~~~V~~l~~ 925 (1131)
|+.|.++++.+.+...... +-..+...++. +. .+ .+.++.+ ....+ ..|+-+.+..+..--+-.....+++|
T Consensus 87 dsqi~~~~l~~~~~~~~~~-~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 165 (877)
T KOG2063|consen 87 DSQIAVHKLPELEPVPSGT-RLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAW 165 (877)
T ss_pred CCcceeeecCccccccccc-ccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcc
Confidence 8889888887665521110 11111111110 00 11 1222222 11111 22322222222111111112222223
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecC
Q 001178 926 STNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQ 1005 (1131)
Q Consensus 926 s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~ 1005 (1131)
.|..+.++-.+....+|.-.++.........+... ..-..+.--+++..++.+.|+...+-|.......+.-...
T Consensus 166 --~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~---s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~l~w 240 (877)
T KOG2063|consen 166 --CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNE---SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGTLVW 240 (877)
T ss_pred --cceeEEEeecceeEEEecCCCccccceeeeccccc---cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCceEe
Confidence 24444444443444455444442211122111111 2233455556666677777776666664432211111111
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEec
Q 001178 1006 DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 1006 ~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
+....++. -+..|+++-+ ++.|.||+..++.++..+.
T Consensus 241 ---s~~P~~v~--~~~PYlIa~~-~~~veI~s~~~~qlvQSI~ 277 (877)
T KOG2063|consen 241 ---SEVPLSVV--VESPYLIALL-DRSVEIRSKLDGQLVQSIT 277 (877)
T ss_pred ---cccchhhc--ccCceEEEEc-cccEEEEeccCHHHhhccc
Confidence 11122222 2455777666 6699999999998777773
No 485
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=82.38 E-value=29 Score=31.65 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=70.3
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCceeee---eeeecCCCCCCCCceEEEEcC-----CCcEEEEEeCCeEEEEeCC
Q 001178 923 LAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS---IAIQLPAGKLPVGETRVQFHS-----DQVRLLVNHETQLAIYDGS 994 (1131)
Q Consensus 923 l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~---~~~~~~~~~~~~~v~~v~~s~-----d~~~l~~~~d~~i~vwd~~ 994 (1131)
-.|......|+.++.-|.|.|.+......... ..+..... ...+++++-.+ +...|+.|+...+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 34554555788888888888888765332111 01111111 13455554433 4557888999999999998
Q ss_pred CcccceeeecCCCCCCCeEEEEEcc----CCCEEEEEecCCcEEEEECCCCceeeE
Q 001178 995 KMECIRQWVPQDVLSSPISSAAYSC----NSQLIYATFTDGSIGVFDADSLRLRCR 1046 (1131)
Q Consensus 995 ~~~~~~~~~~~~~~~~~v~~i~~s~----dg~~l~s~~~dg~i~vwd~~~~~~~~~ 1046 (1131)
....+-.-.. ...|.++.+-. +..++++|+ ++.|.-||.+..+....
T Consensus 82 ~N~d~Fyke~----~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLFYKEV----PDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhhhhhC----ccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 7665443222 34566666632 344566655 88899898776655443
No 486
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.20 E-value=6.7 Score=27.29 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=28.7
Q ss_pred CCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEE
Q 001178 843 KNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAF 882 (1131)
Q Consensus 843 ~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 882 (1131)
|++++|.++. +++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5788777776 688999999999988887753 33444444
No 487
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.49 E-value=7.3 Score=39.75 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=50.5
Q ss_pred EecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceecc-------CCCCCEEEEEEcCCCCEEEEE
Q 001178 355 FHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK-------DSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 355 fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~~~~spdg~~las~ 427 (1131)
+..++.+ |++-+.+|.+++||+.+++.+... ..+. .++. .....|..+.++.+|.-|++-
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~-----------pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIA-----------PLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHH-----------HHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 4556776 566678999999999998876532 1111 1122 466789999999999887776
Q ss_pred eCCCeEEEEEecC
Q 001178 428 FTKHLIHLYTYQG 440 (1131)
Q Consensus 428 ~~d~~i~vwd~~~ 440 (1131)
+ +|....|+.+-
T Consensus 85 s-ng~~y~y~~~L 96 (219)
T PF07569_consen 85 S-NGDSYSYSPDL 96 (219)
T ss_pred e-CCCEEEecccc
Confidence 5 47788888654
No 488
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=81.48 E-value=1.1e+02 Score=35.19 Aligned_cols=63 Identities=16% Similarity=0.074 Sum_probs=39.5
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
.-...+.|+|.|||+ +|++--..|.|++++..++.......+ .......-.+....|+|+||-
T Consensus 28 GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 445789999999997 666654469999998765532211000 000111136778999999884
No 489
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=81.31 E-value=1.3e+02 Score=35.99 Aligned_cols=166 Identities=11% Similarity=0.095 Sum_probs=87.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeee-ecCcCCeeEEEEecC-----CCceEEEEEc--CC-Cc
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI-DAHVGGVNDLAFSYP-----NKQLCIVTCG--DD-KL 479 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~-~~h~~~V~~l~~s~d-----~~~~~l~s~s--~d-~~ 479 (1131)
.+.|..+.|.++++.+++...+|.|.+||...+..-... .+ ..+...|..=.|-++ +..++++.+. .+ -.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~-~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVP-QLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccc-ccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 578999999999999999999999999999332211100 11 122222222133332 3343333333 12 23
Q ss_pred EEEEeC--CCceeEEec---CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC-----C-ceEEEEE
Q 001178 480 IRVWDL--SGRKLFQFE---GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-----G-LWCTTML 548 (1131)
Q Consensus 480 i~iwd~--~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-----~-~~v~~~~ 548 (1131)
.+++.. ++..+..+. .+........|... .| .|+-- .++.|.+|++...+....+... . ..+.++.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G-~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FG-KLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEe-CC-EEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 556664 445444443 12222222233322 22 23333 6789999998776544433222 1 1233443
Q ss_pred EccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEe
Q 001178 549 YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584 (1131)
Q Consensus 549 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 584 (1131)
--...+.|++. +..|++.|..-...+..+.
T Consensus 285 ~~s~nRvLLs~------~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 285 PPSPNRVLLSV------NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred cCCCCeEEEEc------CCEEEEEeehhhhhhhhhh
Confidence 33344455554 6789999987655554444
No 490
>PLN02193 nitrile-specifier protein
Probab=80.86 E-value=1.2e+02 Score=35.41 Aligned_cols=111 Identities=12% Similarity=0.101 Sum_probs=52.8
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-C-----CeEEEEeCCCc
Q 001178 928 NLNILVSSGSDA-----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-E-----TQLAIYDGSKM 996 (1131)
Q Consensus 928 dg~~l~s~~~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d-----~~i~vwd~~~~ 996 (1131)
++.+++.|+.++ .+..+|+.+.+-...... ..........+++. -++++.+.|. + ..+..||+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~--~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPV--EEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcC--CCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 566777777653 577888877543221111 00011111122222 2344444432 2 34678887765
Q ss_pred ccceeeec--CCCCCCCeEEEEEccCCCEEEEEecC----CcEEEEECCCCce
Q 001178 997 ECIRQWVP--QDVLSSPISSAAYSCNSQLIYATFTD----GSIGVFDADSLRL 1043 (1131)
Q Consensus 997 ~~~~~~~~--~~~~~~~v~~i~~s~dg~~l~s~~~d----g~i~vwd~~~~~~ 1043 (1131)
+-...-.. .......- .++ .-++++.+.++.+ ..+.+||+.+.+-
T Consensus 305 ~W~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 305 KWFHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred EEEeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 43221110 00001111 122 2367777777755 4689999987664
No 491
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=80.82 E-value=37 Score=35.99 Aligned_cols=114 Identities=12% Similarity=0.131 Sum_probs=66.9
Q ss_pred CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe------CCCeEEEEEecCCCc
Q 001178 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF------TKHLIHLYTYQGSND 443 (1131)
Q Consensus 370 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~------~d~~i~vwd~~~~~~ 443 (1131)
..|++||..+.+-.. .-.+-.+.|++|.|..+.++++.|. ....+..||.++..-
T Consensus 16 ~~lC~yd~~~~qW~~-------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeec-------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 469999988766443 1234567899999998877888774 355788999987542
Q ss_pred cceeeeeec-----CcCCeeEEEEecCCCceEEEEEc-C--CCcEEEEe-CCCceeEE-ecCCccCeEEEeec
Q 001178 444 LCQSLEIDA-----HVGGVNDLAFSYPNKQLCIVTCG-D--DKLIRVWD-LSGRKLFQ-FEGHEAPVYSVCPH 506 (1131)
Q Consensus 444 ~~~~~~~~~-----h~~~V~~l~~s~d~~~~~l~s~s-~--d~~i~iwd-~~~~~~~~-~~~h~~~v~~~~~~ 506 (1131)
. .+.+ -.++|..+.+..+...-+.+.|. . +..|..|| .+-..+.. .......|..+.+.
T Consensus 77 ~----~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 77 S----SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred e----ecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 1 2222 23678888875433321344433 2 33566776 43333322 22223455555443
No 492
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.58 E-value=1.2 Score=48.76 Aligned_cols=120 Identities=20% Similarity=0.264 Sum_probs=83.7
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.-+..-..++|.-+|..+++.+-..+.+.|||+.+..... + ..-..|.... +.|++-+..+
T Consensus 72 n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq---L--------------E~gg~~s~sl--l~wsKg~~el 132 (615)
T KOG2247|consen 72 NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ---L--------------ESGGTSSKSL--LAWSKGTPEL 132 (615)
T ss_pred CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH---H--------------hccCcchHHH--HhhccCCccc
Confidence 3445556677777777666667778899999998653321 0 0111233333 7899999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCce
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK 489 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~ 489 (1131)
+.+...|.+.|++..+.+... ....|..+++++++.+.+. .+.++.|..+.+-...|..
T Consensus 133 ~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~qeget 191 (615)
T KOG2247|consen 133 VIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTTQEGET 191 (615)
T ss_pred cccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhhhccce
Confidence 999999999999988765432 2333999999999999886 7888888777665543433
No 493
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.75 E-value=1.2e+02 Score=36.35 Aligned_cols=99 Identities=15% Similarity=0.298 Sum_probs=59.0
Q ss_pred EEEEeecCCceEEEeeecce-----eeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 771 ARLLYTNSGIGILALWSNGV-----QKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 771 ~~l~~s~~g~~l~~~~~dg~-----i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
..++|-|+|..+++.+.||. +.++.-+ |- .-|.. .+..+-......++|+-..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-------GL------------rHGef---~lr~~~dEk~~~~~wn~~s 307 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERN-------GL------------RHGEF---DLRVGCDEKAFLENWNLLS 307 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccC-------Cc------------ccCCc---cccCCchhhhhhhhhhHHH
Confidence 45889999999999886643 2222111 00 00110 0111234455667777777
Q ss_pred CEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEE
Q 001178 846 SYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIA 891 (1131)
Q Consensus 846 ~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la 891 (1131)
..++++..+.|++|-..+..-..........+.-+.|+|.....|.
T Consensus 308 ~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~ 353 (1243)
T COG5290 308 TVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLL 353 (1243)
T ss_pred HHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEE
Confidence 7777777889999998876554444434556778899984333333
No 494
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.73 E-value=33 Score=43.72 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=44.1
Q ss_pred CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC
Q 001178 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620 (1131)
Q Consensus 541 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1131)
...+.+..+...+..+.... .+.+..|+.........+..... ..++++..++++..||.+.+||...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 198 EYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccceeeeecCCCcceeee-----eeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCCC
Confidence 33455555554444444443 55666776554444333332221 12778899999999999999999987
Q ss_pred eE
Q 001178 621 NM 622 (1131)
Q Consensus 621 ~~ 622 (1131)
..
T Consensus 267 ~~ 268 (993)
T KOG1983|consen 267 KL 268 (993)
T ss_pred ce
Confidence 65
No 495
>PLN02153 epithiospecifier protein
Probab=79.36 E-value=1.1e+02 Score=33.98 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=35.2
Q ss_pred CCcEEEEEeCC-----CcEEEEEeeccee--EEeecc---cccCeeEEEEccCCCEEEEEeCC-----------CcEEEE
Q 001178 886 DNNIIAIGMED-----STIQIYNVRVDEV--KTKLKG---HQKHITGLAFSTNLNILVSSGSD-----------AQLIFW 944 (1131)
Q Consensus 886 ~~~~la~g~~d-----g~I~iwd~~~~~~--~~~~~~---h~~~V~~l~~s~dg~~l~s~~~D-----------g~v~lw 944 (1131)
++++++.|+.+ ..+.+||..+.+- +..+.. ........+..-++++++.||.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 56788888754 2577888876532 222210 11111222223456777777754 247778
Q ss_pred EcCCCc
Q 001178 945 NTDTWE 950 (1131)
Q Consensus 945 d~~~~~ 950 (1131)
|..+.+
T Consensus 165 d~~~~~ 170 (341)
T PLN02153 165 NIADGK 170 (341)
T ss_pred ECCCCe
Confidence 887744
No 496
>PRK13615 lipoprotein LpqB; Provisional
Probab=79.25 E-value=1.4e+02 Score=35.26 Aligned_cols=154 Identities=8% Similarity=-0.009 Sum_probs=89.3
Q ss_pred eeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCC-Cceeeee
Q 001178 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT-WEKRKSI 955 (1131)
Q Consensus 877 i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~-~~~~~~~ 955 (1131)
..+++.++ ++..+|....++.++++... +.....+. ...++.-.|.++| ++-++-.+...++..... ++. ...
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~-~~v 409 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVG-HPV 409 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCce-EEe
Confidence 37889999 78888877778877777655 22222222 2347778888887 444444433455554433 222 111
Q ss_pred eeecCCCCCCCCceEEEEcCCCcEEEEEe----CCeEEEEeCC--Ccc--cc-eeeecCCCCCCCeEEEEEccCCCEEEE
Q 001178 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNH----ETQLAIYDGS--KME--CI-RQWVPQDVLSSPISSAAYSCNSQLIYA 1026 (1131)
Q Consensus 956 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----d~~i~vwd~~--~~~--~~-~~~~~~~~~~~~v~~i~~s~dg~~l~s 1026 (1131)
..... ....|..+..|+||..++.-. .++|+|--+. .+. .+ .....-......+.++.|..++.+++.
T Consensus 410 ~v~~~---~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl 486 (557)
T PRK13615 410 AVSWT---ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATL 486 (557)
T ss_pred ecccc---CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEE
Confidence 22222 226799999999999988732 3566653332 221 12 111111111348899999999997676
Q ss_pred Ee---cCCcEEEEECC
Q 001178 1027 TF---TDGSIGVFDAD 1039 (1131)
Q Consensus 1027 ~~---~dg~i~vwd~~ 1039 (1131)
+. .+..+++..+.
T Consensus 487 ~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 487 TLAPDGERQVELHQVG 502 (557)
T ss_pred eccCCCCceEEEEECC
Confidence 63 23456666665
No 497
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=79.22 E-value=1.9 Score=40.46 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=41.1
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccc
Q 001178 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENF 124 (1131)
Q Consensus 67 ~~~~~~~~~i~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~ 124 (1131)
++.. ++|.|+-+.||+|+..+..++|..++.+.-.-+.....+++++|..+....++
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l 92 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHL 92 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHH
Confidence 4444 89999999999999999999999999976555544455667777655444333
No 498
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=78.96 E-value=9.5 Score=37.33 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=26.0
Q ss_pred cCeeEEEEccCC------CEEEEEeCCCcEEEEEcCC
Q 001178 918 KHITGLAFSTNL------NILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 918 ~~V~~l~~s~dg------~~l~s~~~Dg~v~lwd~~~ 948 (1131)
..|.+++|||-| -.|++...++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999954 3688999999999998765
No 499
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=78.72 E-value=1.5e+02 Score=35.36 Aligned_cols=241 Identities=11% Similarity=0.192 Sum_probs=125.5
Q ss_pred EEecCCCCEEEEEeCC-eEEEEECC-CceeEEEEeC-CCCCeeEEEEeCC--CCcEEEEEeCCCc-EEEEEeecc-----
Q 001178 839 VALSKNDSYVMSAGGG-KVSLFNMM-NFKVMTTFMS-PPPASTFLAFHPQ--DNNIIAIGMEDST-IQIYNVRVD----- 907 (1131)
Q Consensus 839 l~~s~dg~~la~~~dg-~i~vwd~~-~~~~~~~~~~-~~~~i~~l~~s~~--~~~~la~g~~dg~-I~iwd~~~~----- 907 (1131)
..++|+...+-.|-.| .|.-|=+. |-+.+..+.- +...|.|+..... +..+.++|-.++. -++-.+..+
T Consensus 33 ~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~ 112 (670)
T PF10395_consen 33 DDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTE 112 (670)
T ss_pred cccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccc
Confidence 3567777777766543 34444332 4455555543 3445777766431 1345566644443 444444332
Q ss_pred ------e--eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCC---
Q 001178 908 ------E--VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD--- 976 (1131)
Q Consensus 908 ------~--~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--- 976 (1131)
+ ....++ -.+.|.++.|.++++.+++.-.+|.|.+||.+.+......... ..+...-+.+ .|-++
T Consensus 113 ~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~--~~~~~~v~ys-~fv~~~~~ 188 (670)
T PF10395_consen 113 DGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLK--LKSSINVSYS-KFVNDFEL 188 (670)
T ss_pred ccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccc--cccccceehh-hhhccccc
Confidence 1 111222 2567999999999999999999999999999332221111111 1111011111 22222
Q ss_pred ---CcEEEE-Ee-C---CeEEEEeC-CCcccceeeecCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCceeeE
Q 001178 977 ---QVRLLV-NH-E---TQLAIYDG-SKMECIRQWVPQDVLSSPISSAAYSC-NSQLIYATFTDGSIGVFDADSLRLRCR 1046 (1131)
Q Consensus 977 ---~~~l~~-~~-d---~~i~vwd~-~~~~~~~~~~~~~~~~~~v~~i~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~~ 1046 (1131)
..++.+ +. + -..+++.+ .+...+..+.....+........|.. +|++.-- .++.|.+|++...+....
T Consensus 189 ~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~t 266 (670)
T PF10395_consen 189 ENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKT 266 (670)
T ss_pred ccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEE
Confidence 223333 32 2 34678887 12222222220000122233333333 5553333 688999999999988888
Q ss_pred ecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1047 IAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
+.........+ .. .+++.|..+++++.+. +++|.+.|+.
T Consensus 267 I~l~~ii~~~~------~~--~vSl~~~s~nRvLLs~-~nkIyLld~~ 305 (670)
T PF10395_consen 267 ISLPSIIDKES------DD--LVSLKPPSPNRVLLSV-NNKIYLLDLK 305 (670)
T ss_pred EEechhhcccc------cc--ceEeecCCCCeEEEEc-CCEEEEEeeh
Confidence 87553332210 11 2455555667776655 6679999984
No 500
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.71 E-value=1.4e+02 Score=33.88 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=43.8
Q ss_pred eeEEEEeCCCCcEEEEEeCCCcEEEEE---------eecceeEEeec-----------ccccCeeEEEEccCC---CEEE
Q 001178 877 STFLAFHPQDNNIIAIGMEDSTIQIYN---------VRVDEVKTKLK-----------GHQKHITGLAFSTNL---NILV 933 (1131)
Q Consensus 877 i~~l~~s~~~~~~la~g~~dg~I~iwd---------~~~~~~~~~~~-----------~h~~~V~~l~~s~dg---~~l~ 933 (1131)
|..+..++ .|..+|-.+.+|.+.++= +++|+.....+ ...-.+..++|+|+. ..|.
T Consensus 106 V~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 106 VYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 56677788 788888888888665543 12232221111 111234567788874 5677
Q ss_pred EEeCCCcEEEEEcCC
Q 001178 934 SSGSDAQLIFWNTDT 948 (1131)
Q Consensus 934 s~~~Dg~v~lwd~~~ 948 (1131)
.-+.|.++++||+..
T Consensus 185 iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSE 199 (741)
T ss_pred EEecCcEEEEEecCC
Confidence 777888888888876
Done!