Query 001178
Match_columns 1131
No_of_seqs 839 out of 4599
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 15:03:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 1.9E-66 6.4E-71 631.4 78.8 562 345-1092 14-577 (577)
2 1nr0_A Actin interacting prote 100.0 6.8E-64 2.3E-68 608.8 71.7 573 346-1094 17-610 (611)
3 1nr0_A Actin interacting prote 100.0 2.7E-62 9.3E-67 594.7 75.0 562 316-1039 20-610 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 4.8E-62 1.6E-66 592.6 72.9 527 339-1037 48-577 (577)
5 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-61 4E-66 643.7 64.3 616 344-1095 612-1249(1249)
6 1pgu_A Actin interacting prote 100.0 1.3E-57 4.3E-62 558.8 66.9 559 345-1040 16-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 4.2E-56 1.4E-60 590.4 66.4 571 404-1101 610-1213(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 8E-56 2.7E-60 556.0 65.4 599 341-1107 11-795 (902)
9 1pgu_A Actin interacting prote 100.0 1.5E-54 5.2E-59 531.4 61.1 559 406-1095 15-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 3.8E-52 1.3E-56 522.7 55.1 587 316-1051 19-794 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 5.8E-46 2E-50 471.0 58.2 553 341-1040 6-601 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 4.6E-44 1.6E-48 453.6 59.2 477 404-993 8-502 (814)
13 1vyh_C Platelet-activating fac 100.0 3.9E-44 1.3E-48 412.2 39.8 283 345-661 106-409 (410)
14 1got_B GT-beta; complex (GTP-b 100.0 2.9E-38 1E-42 353.8 44.1 290 340-660 47-340 (340)
15 2pbi_B Guanine nucleotide-bind 100.0 2.5E-38 8.7E-43 355.8 43.2 293 340-660 56-354 (354)
16 3frx_A Guanine nucleotide-bind 100.0 1.7E-38 6E-43 351.8 40.9 298 341-664 10-318 (319)
17 3ow8_A WD repeat-containing pr 100.0 1.7E-38 5.7E-43 351.7 40.3 285 345-661 30-319 (321)
18 2ynn_A Coatomer subunit beta'; 100.0 7.3E-38 2.5E-42 344.4 40.8 289 341-663 6-302 (304)
19 3iz6_a 40S ribosomal protein R 100.0 2E-38 6.7E-43 361.1 35.9 301 338-664 56-376 (380)
20 3ow8_A WD repeat-containing pr 100.0 2.5E-37 8.6E-42 342.2 39.9 294 487-947 22-320 (321)
21 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.4E-37 1.2E-41 345.7 40.8 300 340-665 7-337 (345)
22 4g56_B MGC81050 protein; prote 100.0 1.1E-37 3.8E-42 350.8 36.4 292 345-664 40-344 (357)
23 1vyh_C Platelet-activating fac 100.0 2.6E-37 8.9E-42 355.3 38.8 285 405-796 104-409 (410)
24 4gqb_B Methylosome protein 50; 100.0 3.8E-37 1.3E-41 343.1 38.4 296 346-664 29-332 (344)
25 4g56_B MGC81050 protein; prote 100.0 1.8E-37 6E-42 349.2 34.5 318 731-1097 18-345 (357)
26 1got_B GT-beta; complex (GTP-b 100.0 1.4E-36 4.6E-41 340.2 40.8 248 404-664 50-302 (340)
27 4gqb_B Methylosome protein 50; 100.0 6.7E-37 2.3E-41 341.1 36.6 296 765-1097 28-333 (344)
28 1r5m_A SIR4-interacting protei 100.0 3.4E-36 1.2E-40 349.8 41.4 243 406-661 42-317 (425)
29 2xzm_R RACK1; ribosome, transl 100.0 4.9E-36 1.7E-40 336.3 40.4 299 340-664 13-341 (343)
30 3iz6_a 40S ribosomal protein R 100.0 2.1E-36 7.1E-41 344.4 37.9 320 568-1042 47-377 (380)
31 4ery_A WD repeat-containing pr 100.0 1.5E-35 5E-40 328.1 43.3 285 345-662 21-311 (312)
32 1r5m_A SIR4-interacting protei 100.0 3.8E-36 1.3E-40 349.4 39.7 303 342-664 40-362 (425)
33 2ynn_A Coatomer subunit beta'; 100.0 7.2E-36 2.5E-40 328.5 38.8 248 404-664 8-260 (304)
34 1erj_A Transcriptional repress 100.0 7.6E-36 2.6E-40 341.4 40.1 307 340-663 57-389 (393)
35 2hes_X YDR267CP; beta-propelle 100.0 8.4E-36 2.9E-40 332.0 39.1 294 340-663 6-328 (330)
36 4aow_A Guanine nucleotide-bind 100.0 2.2E-35 7.4E-40 331.6 42.4 301 339-665 29-339 (340)
37 2pm9_A Protein WEB1, protein t 100.0 4.3E-37 1.5E-41 356.3 28.3 293 345-664 10-338 (416)
38 2pbi_B Guanine nucleotide-bind 100.0 1.8E-35 6.2E-40 332.5 40.3 287 404-795 59-354 (354)
39 3frx_A Guanine nucleotide-bind 100.0 3E-35 1E-39 325.8 40.9 247 404-664 12-268 (319)
40 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.5E-35 1.9E-39 327.7 42.6 312 577-1046 5-341 (345)
41 1k32_A Tricorn protease; prote 100.0 3.3E-34 1.1E-38 370.1 54.4 521 346-1042 13-639 (1045)
42 1gxr_A ESG1, transducin-like e 100.0 6.2E-35 2.1E-39 327.4 36.8 285 346-664 8-297 (337)
43 4ery_A WD repeat-containing pr 100.0 2.3E-34 7.7E-39 318.6 40.8 250 404-664 18-269 (312)
44 1gxr_A ESG1, transducin-like e 100.0 7.1E-34 2.4E-38 318.7 44.3 315 316-661 11-335 (337)
45 3dm0_A Maltose-binding peripla 100.0 1.4E-34 4.8E-39 357.6 40.9 292 345-662 380-692 (694)
46 2hes_X YDR267CP; beta-propelle 100.0 6.2E-34 2.1E-38 316.9 41.3 307 576-1040 3-328 (330)
47 3vl1_A 26S proteasome regulato 100.0 3.6E-35 1.2E-39 340.6 31.8 283 348-664 57-366 (420)
48 3gre_A Serine/threonine-protei 100.0 5.5E-35 1.9E-39 340.8 32.2 347 405-945 59-437 (437)
49 3vl1_A 26S proteasome regulato 100.0 1.6E-34 5.4E-39 335.2 35.7 344 410-948 57-419 (420)
50 2j04_B YDR362CP, TAU91; beta p 100.0 2.7E-35 9.2E-40 344.5 29.2 275 335-663 121-428 (524)
51 2xzm_R RACK1; ribosome, transl 100.0 1.6E-33 5.4E-38 315.9 42.5 246 404-664 16-286 (343)
52 3ei3_B DNA damage-binding prot 100.0 3.9E-34 1.3E-38 327.1 37.2 294 340-663 65-382 (383)
53 1erj_A Transcriptional repress 100.0 2.4E-33 8.4E-38 320.6 40.0 290 495-948 62-389 (393)
54 1k32_A Tricorn protease; prote 100.0 3.3E-32 1.1E-36 351.4 55.0 531 408-1097 13-639 (1045)
55 2pm9_A Protein WEB1, protein t 100.0 1.3E-34 4.4E-39 335.5 27.8 322 320-664 39-415 (416)
56 1sq9_A Antiviral protein SKI8; 100.0 3.7E-33 1.3E-37 320.9 39.4 297 342-664 10-396 (397)
57 2j04_B YDR362CP, TAU91; beta p 100.0 5.2E-35 1.8E-39 342.1 24.1 343 408-948 132-517 (524)
58 4e54_B DNA damage-binding prot 100.0 2.6E-34 8.8E-39 333.9 29.8 293 345-664 117-431 (435)
59 3zwl_B Eukaryotic translation 100.0 8.8E-33 3E-37 314.2 41.6 286 343-664 28-347 (369)
60 3odt_A Protein DOA1; ubiquitin 100.0 8E-33 2.7E-37 306.5 40.0 287 339-664 9-297 (313)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.2E-32 1.4E-36 316.9 46.1 274 345-664 116-392 (445)
62 4aow_A Guanine nucleotide-bind 100.0 1.3E-32 4.6E-37 308.8 40.1 299 404-799 33-338 (340)
63 3v7d_B Cell division control p 100.0 2.9E-32 1E-36 320.4 44.7 278 344-664 118-422 (464)
64 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.5E-32 1.6E-36 316.6 44.3 316 449-948 113-442 (445)
65 3i2n_A WD repeat-containing pr 100.0 3.9E-33 1.3E-37 315.5 33.9 289 345-664 16-354 (357)
66 1k8k_C P40, ARP2/3 complex 41 100.0 6.7E-33 2.3E-37 315.6 35.6 292 346-668 7-366 (372)
67 3v7d_B Cell division control p 100.0 9.5E-32 3.2E-36 316.1 46.1 342 535-1037 115-460 (464)
68 3k26_A Polycomb protein EED; W 100.0 5.2E-33 1.8E-37 315.7 32.3 290 345-662 16-365 (366)
69 3gre_A Serine/threonine-protei 100.0 1.1E-32 3.9E-37 321.2 33.4 310 321-660 34-437 (437)
70 4a11_B DNA excision repair pro 100.0 6.6E-33 2.3E-37 320.1 30.6 350 566-1095 22-405 (408)
71 3zwl_B Eukaryotic translation 100.0 3.3E-31 1.1E-35 301.2 43.6 323 533-1047 24-353 (369)
72 4e54_B DNA damage-binding prot 100.0 1.3E-32 4.5E-37 319.5 31.3 303 580-1044 112-434 (435)
73 4h5i_A Guanine nucleotide-exch 100.0 2.3E-32 8E-37 308.2 32.3 301 345-664 12-344 (365)
74 4aez_A CDC20, WD repeat-contai 100.0 1.3E-31 4.4E-36 307.8 38.9 289 345-666 89-383 (401)
75 3ei3_B DNA damage-binding prot 100.0 1.9E-31 6.6E-36 304.7 40.1 306 571-1040 57-382 (383)
76 3dwl_C Actin-related protein 2 100.0 1.6E-33 5.6E-38 321.3 21.6 285 346-661 10-377 (377)
77 1sq9_A Antiviral protein SKI8; 100.0 5.5E-32 1.9E-36 311.1 34.4 294 490-949 9-396 (397)
78 3k26_A Polycomb protein EED; W 100.0 5.2E-32 1.8E-36 307.4 33.3 317 493-948 14-366 (366)
79 4gga_A P55CDC, cell division c 100.0 3E-31 1E-35 306.6 39.9 281 349-664 107-396 (420)
80 2pm7_B Protein transport prote 100.0 1.3E-31 4.3E-36 293.4 34.1 251 404-662 4-284 (297)
81 2j04_A TAU60, YPL007P, hypothe 100.0 1.8E-32 6.1E-37 309.0 26.9 316 346-787 14-350 (588)
82 1k8k_C P40, ARP2/3 complex 41 100.0 1.6E-31 5.5E-36 304.2 35.2 324 538-1043 5-364 (372)
83 3dm0_A Maltose-binding peripla 100.0 2.3E-31 8E-36 328.7 38.8 248 404-664 377-633 (694)
84 2pm7_B Protein transport prote 100.0 2.9E-31 9.9E-36 290.6 34.7 249 345-619 7-285 (297)
85 4h5i_A Guanine nucleotide-exch 100.0 2.6E-31 8.9E-36 299.6 34.8 202 832-1041 132-344 (365)
86 4ggc_A P55CDC, cell division c 100.0 2.3E-30 7.9E-35 287.4 40.9 281 350-664 28-316 (318)
87 3dw8_B Serine/threonine-protei 100.0 2.1E-31 7.3E-36 311.6 33.7 300 343-661 24-444 (447)
88 2j04_A TAU60, YPL007P, hypothe 100.0 1E-32 3.5E-37 310.9 20.8 224 407-664 13-255 (588)
89 4a11_B DNA excision repair pro 100.0 1E-30 3.6E-35 301.6 37.7 300 345-664 41-366 (408)
90 3dwl_C Actin-related protein 2 100.0 9.2E-32 3.1E-36 306.7 27.4 245 766-1039 10-280 (377)
91 3i2n_A WD repeat-containing pr 100.0 7.3E-31 2.5E-35 296.8 34.1 252 403-664 12-292 (357)
92 3odt_A Protein DOA1; ubiquitin 100.0 3.2E-30 1.1E-34 285.5 37.4 239 404-664 13-256 (313)
93 1yfq_A Cell cycle arrest prote 100.0 1.8E-30 6.3E-35 291.6 33.3 280 345-660 9-321 (342)
94 1p22_A F-BOX/WD-repeat protein 100.0 3.1E-30 1.1E-34 299.8 36.0 272 345-664 131-415 (435)
95 3bg1_A Protein SEC13 homolog; 100.0 4.4E-31 1.5E-35 291.9 26.5 249 345-619 11-293 (316)
96 3bg1_A Protein SEC13 homolog; 100.0 3.6E-31 1.2E-35 292.5 25.0 249 404-662 8-292 (316)
97 2aq5_A Coronin-1A; WD40 repeat 100.0 1.7E-30 5.7E-35 298.8 30.6 295 349-664 36-343 (402)
98 3mmy_A MRNA export factor; mRN 100.0 6.3E-30 2.1E-34 290.4 34.0 289 337-661 28-344 (368)
99 4gga_A P55CDC, cell division c 100.0 7.6E-29 2.6E-33 286.4 40.5 285 767-1097 105-397 (420)
100 4aez_A CDC20, WD repeat-contai 100.0 2E-29 6.8E-34 289.4 34.1 284 407-799 89-381 (401)
101 3f3f_A Nucleoporin SEH1; struc 100.0 7.6E-29 2.6E-33 279.1 33.9 260 345-627 9-345 (351)
102 3dw8_B Serine/threonine-protei 100.0 7.1E-29 2.4E-33 290.2 34.8 248 407-664 26-374 (447)
103 4ggc_A P55CDC, cell division c 100.0 4.7E-28 1.6E-32 268.7 39.6 282 770-1097 28-317 (318)
104 3f3f_A Nucleoporin SEH1; struc 100.0 8.5E-29 2.9E-33 278.7 33.7 252 404-664 6-338 (351)
105 3jrp_A Fusion protein of prote 100.0 6.5E-29 2.2E-33 283.4 31.9 257 341-622 4-290 (379)
106 1yfq_A Cell cycle arrest prote 100.0 7.6E-29 2.6E-33 278.4 31.7 250 404-664 6-283 (342)
107 3jrp_A Fusion protein of prote 100.0 1.4E-28 4.9E-33 280.6 33.2 253 404-664 6-288 (379)
108 1p22_A F-BOX/WD-repeat protein 100.0 2.8E-28 9.5E-33 283.3 34.5 233 406-664 130-366 (435)
109 3mmy_A MRNA export factor; mRN 100.0 4.5E-28 1.5E-32 275.1 33.1 295 485-948 27-346 (368)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.2E-28 2.5E-32 281.0 35.5 299 348-664 5-392 (450)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 2.5E-28 8.7E-33 280.6 28.1 246 411-664 36-300 (402)
112 3vu4_A KMHSV2; beta-propeller 100.0 9.4E-28 3.2E-32 269.7 29.8 277 345-664 17-337 (355)
113 2w18_A PALB2, fancn, partner a 100.0 2.4E-26 8E-31 243.1 37.4 299 411-946 41-355 (356)
114 3bws_A Protein LP49; two-domai 100.0 9E-27 3.1E-31 270.9 37.6 304 328-662 101-431 (433)
115 2xyi_A Probable histone-bindin 100.0 1.3E-27 4.3E-32 276.9 29.7 265 340-620 121-411 (430)
116 3jro_A Fusion protein of prote 100.0 2.9E-28 9.8E-33 302.3 25.4 251 345-621 7-287 (753)
117 3vu4_A KMHSV2; beta-propeller 100.0 5.5E-27 1.9E-31 263.5 33.0 239 405-664 15-272 (355)
118 2w18_A PALB2, fancn, partner a 100.0 1.8E-26 6.2E-31 243.9 34.7 219 766-1038 110-355 (356)
119 3lrv_A PRE-mRNA-splicing facto 100.0 4E-27 1.4E-31 263.9 30.2 279 461-948 43-333 (343)
120 1l0q_A Surface layer protein; 100.0 5.1E-26 1.7E-30 260.6 40.1 274 361-672 3-283 (391)
121 2xyi_A Probable histone-bindin 100.0 1.7E-26 5.7E-31 267.4 33.9 252 404-664 123-411 (430)
122 3bws_A Protein LP49; two-domai 100.0 2.1E-25 7.3E-30 259.3 42.5 354 408-948 26-432 (433)
123 3jro_A Fusion protein of prote 100.0 3.4E-27 1.1E-31 292.7 28.9 253 404-664 4-286 (753)
124 1l0q_A Surface layer protein; 100.0 3.3E-25 1.1E-29 253.8 42.2 327 470-982 4-364 (391)
125 4gq1_A NUP37; propeller, trans 100.0 7.6E-27 2.6E-31 266.4 26.5 303 347-661 15-387 (393)
126 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.6E-25 5.5E-30 261.2 36.8 243 410-661 5-337 (450)
127 3lrv_A PRE-mRNA-splicing facto 99.9 8.5E-27 2.9E-31 261.2 23.8 267 354-662 43-332 (343)
128 1nir_A Nitrite reductase; hemo 99.9 1.2E-24 4.2E-29 256.8 42.0 336 508-1050 146-524 (543)
129 4gq1_A NUP37; propeller, trans 99.9 1.1E-26 3.6E-31 265.2 22.2 248 345-618 87-388 (393)
130 1nir_A Nitrite reductase; hemo 99.9 1.1E-24 3.7E-29 257.3 38.3 274 354-664 144-459 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.8E-23 6.3E-28 239.6 27.9 284 347-664 62-388 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-22 3.7E-27 254.1 35.2 303 347-663 36-413 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.8E-22 9.7E-27 229.7 29.1 289 320-644 83-409 (415)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-21 3.6E-26 245.1 35.8 244 409-662 36-366 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 1.1E-22 3.9E-27 253.2 25.7 287 348-663 17-393 (723)
136 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-21 3.9E-26 244.1 29.9 386 544-1047 19-450 (723)
137 3u4y_A Uncharacterized protein 99.9 1.9E-20 6.3E-25 208.7 36.0 280 353-664 3-305 (331)
138 2z3z_A Dipeptidyl aminopeptida 99.9 1.3E-20 4.4E-25 233.8 34.6 237 412-662 28-341 (706)
139 3vgz_A Uncharacterized protein 99.9 3.4E-20 1.2E-24 208.7 35.0 276 344-654 37-335 (353)
140 2z3z_A Dipeptidyl aminopeptida 99.9 6.7E-21 2.3E-25 236.3 29.4 321 457-950 28-437 (706)
141 3u4y_A Uncharacterized protein 99.9 2.6E-20 8.7E-25 207.6 30.7 290 774-1103 4-312 (331)
142 1ri6_A Putative isomerase YBHE 99.9 1.1E-19 3.6E-24 203.7 35.0 252 832-1103 36-316 (343)
143 2ojh_A Uncharacterized protein 99.9 2.6E-20 9E-25 203.6 26.0 257 365-654 17-293 (297)
144 1ri6_A Putative isomerase YBHE 99.9 2.8E-19 9.4E-24 200.3 34.9 273 360-662 5-307 (343)
145 1pby_B Quinohemoprotein amine 99.9 2.4E-19 8.2E-24 200.2 31.6 199 837-1050 85-320 (337)
146 3vgz_A Uncharacterized protein 99.9 6.2E-19 2.1E-23 198.4 34.4 273 767-1086 40-335 (353)
147 2oit_A Nucleoporin 214KDA; NH2 99.8 9.2E-19 3.2E-23 200.9 34.4 314 767-1095 36-405 (434)
148 1pby_B Quinohemoprotein amine 99.8 7.7E-19 2.6E-23 196.1 31.9 301 512-918 2-322 (337)
149 2ojh_A Uncharacterized protein 99.8 2.4E-19 8.1E-24 195.9 26.8 255 324-610 20-293 (297)
150 3o4h_A Acylamino-acid-releasin 99.8 1.9E-19 6.4E-24 217.4 25.5 273 346-662 20-314 (582)
151 3hfq_A Uncharacterized protein 99.8 2.9E-18 9.9E-23 192.2 32.4 249 833-1098 39-320 (347)
152 1z68_A Fibroblast activation p 99.8 2.3E-19 7.8E-24 222.9 24.4 378 546-1048 20-451 (719)
153 1z68_A Fibroblast activation p 99.8 2.3E-19 7.8E-24 222.9 21.9 277 352-663 20-391 (719)
154 2oit_A Nucleoporin 214KDA; NH2 99.8 5.6E-18 1.9E-22 194.4 30.9 220 347-577 36-279 (434)
155 4a5s_A Dipeptidyl peptidase 4 99.8 7.7E-18 2.6E-22 208.8 34.1 381 544-1048 19-457 (740)
156 3scy_A Hypothetical bacterial 99.8 1.9E-16 6.4E-21 178.5 41.9 178 833-1018 154-360 (361)
157 3o4h_A Acylamino-acid-releasin 99.8 4.2E-18 1.4E-22 205.6 28.3 235 409-661 21-274 (582)
158 3hfq_A Uncharacterized protein 99.8 3.8E-17 1.3E-21 183.1 33.8 245 407-662 37-316 (347)
159 3pe7_A Oligogalacturonate lyas 99.8 2.2E-17 7.5E-22 188.4 30.6 292 345-662 28-381 (388)
160 1jmx_B Amine dehydrogenase; ox 99.8 1.5E-17 5.1E-22 186.7 28.0 245 838-1105 4-335 (349)
161 3scy_A Hypothetical bacterial 99.8 5.1E-17 1.8E-21 183.1 31.7 248 833-1099 49-341 (361)
162 1jmx_B Amine dehydrogenase; ox 99.8 2.4E-17 8.1E-22 185.0 28.7 274 352-664 4-326 (349)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.1E-16 3.7E-21 180.3 30.1 248 834-1096 40-342 (365)
164 4a5s_A Dipeptidyl peptidase 4 99.8 7.9E-17 2.7E-21 199.7 31.1 114 456-581 18-146 (740)
165 3pe7_A Oligogalacturonate lyas 99.7 9.1E-17 3.1E-21 183.2 25.7 253 405-664 26-330 (388)
166 1jof_A Carboxy-CIS,CIS-muconat 99.7 5.1E-16 1.7E-20 174.8 31.0 249 408-664 38-342 (365)
167 2oiz_A Aromatic amine dehydrog 99.7 1.7E-15 5.7E-20 169.4 34.7 312 510-930 14-360 (361)
168 2oiz_A Aromatic amine dehydrog 99.7 1E-15 3.5E-20 171.2 30.8 220 834-1074 108-358 (361)
169 3c5m_A Oligogalacturonate lyas 99.7 2.7E-16 9.3E-21 179.8 24.4 282 350-661 38-380 (396)
170 3c5m_A Oligogalacturonate lyas 99.7 4.2E-16 1.5E-20 178.2 24.9 179 853-1042 167-386 (396)
171 1qks_A Cytochrome CD1 nitrite 99.7 2.2E-13 7.4E-18 159.8 42.4 330 509-1004 165-547 (567)
172 3fvz_A Peptidyl-glycine alpha- 99.7 2.3E-14 7.9E-19 158.5 29.9 247 347-619 23-322 (329)
173 3azo_A Aminopeptidase; POP fam 99.7 9.8E-15 3.4E-19 179.3 29.4 206 449-660 18-269 (662)
174 1qks_A Cytochrome CD1 nitrite 99.7 3.1E-13 1.1E-17 158.4 39.1 322 566-1049 176-547 (567)
175 3fvz_A Peptidyl-glycine alpha- 99.6 4E-14 1.4E-18 156.6 28.6 251 833-1097 23-324 (329)
176 1q7f_A NHL, brain tumor CG1071 99.6 2E-13 6.9E-18 147.8 33.3 245 346-620 28-281 (286)
177 4a2l_A BT_4663, two-component 99.6 5E-10 1.7E-14 139.8 68.5 587 347-1095 42-659 (795)
178 3azo_A Aminopeptidase; POP fam 99.6 1.6E-14 5.3E-19 177.5 27.2 286 345-664 21-370 (662)
179 1q7f_A NHL, brain tumor CG1071 99.6 2.5E-13 8.6E-18 147.1 32.2 245 407-664 27-281 (286)
180 2gop_A Trilobed protease; beta 99.6 4.8E-14 1.6E-18 157.8 27.2 264 346-662 13-330 (347)
181 4a2l_A BT_4663, two-component 99.6 4.6E-10 1.6E-14 140.1 64.7 535 347-1039 87-658 (795)
182 2xdw_A Prolyl endopeptidase; a 99.6 5.6E-13 1.9E-17 164.4 32.2 248 406-664 121-415 (710)
183 2gop_A Trilobed protease; beta 99.6 8.6E-13 2.9E-17 147.5 29.8 221 834-1094 59-330 (347)
184 2dg1_A DRP35, lactonase; beta 99.6 1.1E-12 3.6E-17 145.7 29.8 272 348-654 6-301 (333)
185 3dsm_A Uncharacterized protein 99.6 2.7E-13 9.4E-18 149.5 24.5 251 834-1110 44-316 (328)
186 3e5z_A Putative gluconolactona 99.6 1.9E-12 6.7E-17 140.8 31.0 242 345-622 25-289 (296)
187 2z2n_A Virginiamycin B lyase; 99.6 2.8E-11 9.5E-16 131.8 39.4 282 346-664 13-296 (299)
188 3no2_A Uncharacterized protein 99.5 1.8E-12 6.2E-17 138.2 28.0 252 843-1111 3-268 (276)
189 3no2_A Uncharacterized protein 99.5 2.3E-12 7.9E-17 137.4 28.6 243 362-639 7-272 (276)
190 2xdw_A Prolyl endopeptidase; a 99.5 7E-13 2.4E-17 163.5 28.3 248 346-621 123-416 (710)
191 2dg1_A DRP35, lactonase; beta 99.5 8.6E-12 2.9E-16 138.4 34.3 236 345-610 42-301 (333)
192 3v9f_A Two-component system se 99.5 3E-08 1E-12 123.3 70.2 594 347-1096 18-657 (781)
193 2bkl_A Prolyl endopeptidase; m 99.5 7E-13 2.4E-17 162.9 26.3 247 406-664 117-398 (695)
194 2bkl_A Prolyl endopeptidase; m 99.5 3.2E-13 1.1E-17 166.0 23.2 248 346-622 119-400 (695)
195 2mad_H Methylamine dehydrogena 99.5 2.1E-11 7.1E-16 136.0 35.7 202 836-1047 127-357 (373)
196 3e5z_A Putative gluconolactona 99.5 3.7E-12 1.3E-16 138.6 28.5 236 405-663 23-286 (296)
197 3sjl_D Methylamine dehydrogena 99.5 5.7E-12 2E-16 137.7 29.4 206 835-1049 138-372 (386)
198 3dsm_A Uncharacterized protein 99.5 4.5E-12 1.5E-16 139.7 28.0 269 368-662 15-301 (328)
199 3sjl_D Methylamine dehydrogena 99.5 1.4E-11 4.7E-16 134.7 30.9 151 506-663 39-208 (386)
200 2z2n_A Virginiamycin B lyase; 99.5 2.5E-10 8.6E-15 124.1 40.7 239 407-661 12-253 (299)
201 2qc5_A Streptogramin B lactona 99.5 1.4E-10 4.7E-15 126.3 38.5 279 346-661 18-298 (300)
202 1rwi_B Serine/threonine-protei 99.5 5E-12 1.7E-16 135.5 26.3 239 349-621 25-266 (270)
203 3v9f_A Two-component system se 99.5 2.4E-08 8E-13 124.4 62.8 540 348-1040 66-656 (781)
204 1rwi_B Serine/threonine-protei 99.5 8.5E-12 2.9E-16 133.6 26.8 240 835-1098 25-267 (270)
205 2mad_H Methylamine dehydrogena 99.5 1.7E-10 5.9E-15 128.6 36.3 274 354-664 27-351 (373)
206 3c75_H MADH, methylamine dehyd 99.4 2.3E-11 8E-16 135.6 27.8 204 836-1047 179-409 (426)
207 1yr2_A Prolyl oligopeptidase; 99.4 8.8E-12 3E-16 154.2 26.0 246 407-664 160-442 (741)
208 1yr2_A Prolyl oligopeptidase; 99.4 1.5E-11 5.1E-16 152.2 23.6 247 346-622 161-444 (741)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 4.4E-10 1.5E-14 123.3 30.8 238 834-1095 18-299 (314)
210 3c75_H MADH, methylamine dehyd 99.3 3.3E-10 1.1E-14 126.4 29.4 296 508-913 81-409 (426)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 3E-10 1E-14 124.6 29.1 248 346-619 16-299 (314)
212 2qc5_A Streptogramin B lactona 99.3 3.9E-09 1.3E-13 114.7 37.3 240 407-661 17-258 (300)
213 3hrp_A Uncharacterized protein 99.3 1.8E-09 6E-14 122.3 32.8 253 833-1093 130-408 (409)
214 1xip_A Nucleoporin NUP159; bet 99.3 4.5E-10 1.6E-14 123.4 24.6 176 834-1028 38-232 (388)
215 3g4e_A Regucalcin; six bladed 99.3 2.9E-09 9.8E-14 115.4 30.2 229 833-1084 12-262 (297)
216 3hrp_A Uncharacterized protein 99.3 3.1E-09 1.1E-13 120.2 31.0 239 348-617 131-408 (409)
217 3iuj_A Prolyl endopeptidase; h 99.3 7.6E-10 2.6E-14 135.4 27.8 250 346-623 127-409 (693)
218 3g4e_A Regucalcin; six bladed 99.2 2.5E-09 8.7E-14 115.8 28.1 228 347-608 12-261 (297)
219 2qe8_A Uncharacterized protein 99.2 4.1E-10 1.4E-14 124.9 22.0 269 348-653 17-311 (343)
220 1mda_H Methylamine dehydrogena 99.2 6.5E-10 2.2E-14 122.0 22.3 197 837-1049 127-355 (368)
221 4a0p_A LRP6, LRP-6, low-densit 99.2 1.8E-05 6E-10 94.0 61.8 532 423-1048 8-557 (628)
222 2ghs_A AGR_C_1268P; regucalcin 99.2 8.4E-09 2.9E-13 113.3 30.2 225 349-609 50-292 (326)
223 3dr2_A Exported gluconolactona 99.2 3.3E-09 1.1E-13 115.5 26.4 234 345-616 42-303 (305)
224 2qe8_A Uncharacterized protein 99.2 9.3E-10 3.2E-14 122.0 22.2 271 768-1091 17-317 (343)
225 3iuj_A Prolyl endopeptidase; h 99.2 1.1E-09 3.7E-14 134.0 23.3 244 406-664 125-406 (693)
226 1kb0_A Quinohemoprotein alcoho 99.2 1.8E-08 6.2E-13 121.7 32.7 193 853-1050 189-517 (677)
227 1yiq_A Quinohemoprotein alcoho 99.1 1.3E-08 4.4E-13 123.3 30.6 193 853-1050 182-515 (689)
228 3dr2_A Exported gluconolactona 99.1 1.4E-08 4.7E-13 110.6 27.4 233 407-657 42-301 (305)
229 1xip_A Nucleoporin NUP159; bet 99.1 7.2E-10 2.5E-14 121.8 17.0 185 768-982 38-230 (388)
230 2ghs_A AGR_C_1268P; regucalcin 99.1 5.2E-08 1.8E-12 106.9 31.4 223 835-1085 50-293 (326)
231 3s94_A LRP-6, low-density lipo 99.1 8.6E-05 2.9E-09 88.0 59.6 525 429-1042 16-553 (619)
232 1yiq_A Quinohemoprotein alcoho 99.1 6.6E-08 2.3E-12 117.0 32.7 81 896-982 454-534 (689)
233 1kb0_A Quinohemoprotein alcoho 99.1 3.4E-08 1.2E-12 119.3 29.9 351 553-982 77-536 (677)
234 1mda_H Methylamine dehydrogena 99.1 1.8E-08 6.2E-13 110.6 24.3 296 512-926 33-365 (368)
235 3q7m_A Lipoprotein YFGL, BAMB; 99.1 6.2E-08 2.1E-12 109.0 29.7 147 470-628 55-216 (376)
236 2ece_A 462AA long hypothetical 99.0 8.4E-08 2.9E-12 105.0 28.0 237 840-1083 88-399 (462)
237 3hxj_A Pyrrolo-quinoline quino 99.0 3.1E-08 1.1E-12 109.2 24.2 301 459-948 24-324 (330)
238 3s94_A LRP-6, low-density lipo 99.0 0.0002 6.7E-09 85.0 58.5 486 368-950 16-512 (619)
239 3hxj_A Pyrrolo-quinoline quino 99.0 2.8E-08 9.6E-13 109.6 21.8 217 415-660 25-241 (330)
240 1fwx_A Nitrous oxide reductase 99.0 9.7E-08 3.3E-12 108.5 25.9 273 551-950 99-433 (595)
241 3q7m_A Lipoprotein YFGL, BAMB; 99.0 1.7E-07 5.9E-12 105.4 28.5 283 779-1104 53-346 (376)
242 3ei3_A DNA damage-binding prot 99.0 0.0005 1.7E-08 87.1 63.3 571 413-1095 330-999 (1158)
243 2hz6_A Endoplasmic reticulum t 98.9 1.2E-09 4.2E-14 122.0 9.2 189 420-628 8-201 (369)
244 3ei3_A DNA damage-binding prot 98.9 0.00062 2.1E-08 86.3 65.4 175 854-1040 807-999 (1158)
245 2ece_A 462AA long hypothetical 98.9 7E-08 2.4E-12 105.7 22.2 238 354-607 88-399 (462)
246 2hz6_A Endoplasmic reticulum t 98.9 8.2E-10 2.8E-14 123.4 6.2 191 886-1103 8-200 (369)
247 4a0p_A LRP6, LRP-6, low-densit 98.9 0.00042 1.4E-08 82.2 60.3 209 346-584 35-245 (628)
248 1fwx_A Nitrous oxide reductase 98.9 1.2E-07 4.1E-12 107.8 21.6 242 843-1106 99-442 (595)
249 1npe_A Nidogen, entactin; glyc 98.8 1.1E-05 3.8E-10 85.3 33.4 222 410-645 36-263 (267)
250 1kv9_A Type II quinohemoprotei 98.8 2.5E-06 8.5E-11 102.9 30.3 193 853-1050 177-498 (668)
251 2iwa_A Glutamine cyclotransfer 98.7 1.7E-06 5.8E-11 89.3 23.3 202 834-1041 21-238 (266)
252 1kv9_A Type II quinohemoprotei 98.7 5.3E-06 1.8E-10 100.1 30.7 109 512-628 67-196 (668)
253 1npe_A Nidogen, entactin; glyc 98.7 9.5E-06 3.3E-10 85.9 29.3 204 834-1049 36-247 (267)
254 2iwa_A Glutamine cyclotransfer 98.7 2.1E-06 7.2E-11 88.5 22.8 223 864-1097 9-239 (266)
255 3ott_A Two-component system se 98.7 0.0026 8.9E-08 78.4 58.6 529 347-1039 62-625 (758)
256 1w6s_A Methanol dehydrogenase 98.7 1.8E-05 6.2E-10 93.0 33.2 192 853-1050 181-513 (599)
257 3nol_A Glutamine cyclotransfer 98.6 5E-06 1.7E-10 84.4 22.3 211 865-1089 32-250 (262)
258 3nol_A Glutamine cyclotransfer 98.6 5E-06 1.7E-10 84.4 21.9 187 833-1028 42-243 (262)
259 2ad6_A Methanol dehydrogenase 98.6 1.7E-05 5.7E-10 93.5 30.0 110 512-629 63-195 (571)
260 2ad6_A Methanol dehydrogenase 98.6 2.6E-05 9E-10 91.8 31.6 192 853-1050 175-504 (571)
261 1w6s_A Methanol dehydrogenase 98.5 2.1E-05 7.2E-10 92.4 28.2 251 839-1106 111-514 (599)
262 3nok_A Glutaminyl cyclase; bet 98.5 8.3E-06 2.8E-10 82.7 20.7 186 833-1028 54-253 (268)
263 2fp8_A Strictosidine synthase; 98.5 6.3E-05 2.1E-09 82.1 29.8 239 835-1096 20-314 (322)
264 3nok_A Glutaminyl cyclase; bet 98.5 7.4E-06 2.5E-10 83.0 20.2 206 865-1086 44-257 (268)
265 1k3i_A Galactose oxidase precu 98.5 1E-05 3.4E-10 98.0 24.9 277 352-652 190-530 (656)
266 3ott_A Two-component system se 98.5 0.0081 2.8E-07 74.0 71.1 573 347-1095 21-626 (758)
267 1flg_A Protein (quinoprotein e 98.5 0.00022 7.6E-09 84.0 35.2 150 897-1050 291-526 (582)
268 1flg_A Protein (quinoprotein e 98.5 0.00034 1.2E-08 82.4 36.3 191 471-665 71-357 (582)
269 3mbr_X Glutamine cyclotransfer 98.4 4.1E-05 1.4E-09 77.1 23.7 188 833-1028 20-222 (243)
270 2xe4_A Oligopeptidase B; hydro 98.4 2.8E-05 9.7E-10 95.4 26.6 247 349-622 175-461 (751)
271 3mbr_X Glutamine cyclotransfer 98.4 8E-05 2.7E-09 75.0 24.7 211 865-1089 10-229 (243)
272 2p4o_A Hypothetical protein; p 98.4 8.2E-05 2.8E-09 80.4 26.7 228 410-654 32-279 (306)
273 2fp8_A Strictosidine synthase; 98.4 0.0001 3.5E-09 80.4 27.7 255 349-619 20-313 (322)
274 2p4o_A Hypothetical protein; p 98.4 0.00022 7.5E-09 77.0 30.0 241 334-610 18-279 (306)
275 3v64_C Agrin; beta propeller, 98.3 0.00066 2.3E-08 74.5 30.9 238 835-1097 35-277 (349)
276 3qqz_A Putative uncharacterize 98.3 0.00055 1.9E-08 70.1 28.0 201 346-574 25-251 (255)
277 2xbg_A YCF48-like protein; pho 98.3 0.0034 1.2E-07 68.1 36.3 280 346-660 34-319 (327)
278 3v65_B Low-density lipoprotein 98.3 0.00044 1.5E-08 77.1 29.3 237 837-1098 80-321 (386)
279 3qqz_A Putative uncharacterize 98.2 0.00051 1.7E-08 70.3 26.8 216 869-1091 21-249 (255)
280 1ijq_A LDL receptor, low-densi 98.2 0.001 3.6E-08 71.8 30.7 208 833-1048 29-246 (316)
281 1ijq_A LDL receptor, low-densi 98.2 0.0014 4.8E-08 70.8 30.9 229 847-1097 3-240 (316)
282 3tc9_A Hypothetical hydrolase; 98.2 0.00061 2.1E-08 77.1 28.8 250 835-1094 138-429 (430)
283 3v65_B Low-density lipoprotein 98.2 0.0012 4.2E-08 73.5 30.7 246 349-627 78-326 (386)
284 3p5b_L Low density lipoprotein 98.2 0.0015 5E-08 73.1 31.3 231 846-1098 84-323 (400)
285 2xbg_A YCF48-like protein; pho 98.2 0.0022 7.4E-08 69.7 31.7 234 833-1092 79-319 (327)
286 3v64_C Agrin; beta propeller, 98.1 0.0009 3.1E-08 73.4 28.3 205 834-1048 73-283 (349)
287 2xe4_A Oligopeptidase B; hydro 98.1 0.00019 6.5E-09 88.0 24.6 196 835-1038 175-398 (751)
288 4hw6_A Hypothetical protein, I 98.1 0.0011 3.6E-08 75.1 27.9 251 835-1094 140-432 (433)
289 1k3i_A Galactose oxidase precu 98.0 0.00032 1.1E-08 84.8 23.4 251 838-1106 190-506 (656)
290 3amr_A 3-phytase; beta-propell 98.0 0.0046 1.6E-07 65.6 28.9 197 844-1048 39-272 (355)
291 3p5b_L Low density lipoprotein 98.0 0.0053 1.8E-07 68.6 31.5 208 833-1048 111-328 (400)
292 3kya_A Putative phosphatase; s 98.0 0.0028 9.6E-08 71.5 27.6 256 835-1097 140-477 (496)
293 3sov_A LRP-6, low-density lipo 97.9 0.011 3.8E-07 63.5 30.3 231 369-627 12-246 (318)
294 3tc9_A Hypothetical hydrolase; 97.8 0.0025 8.5E-08 72.0 25.0 240 411-661 138-428 (430)
295 3sov_A LRP-6, low-density lipo 97.8 0.0058 2E-07 65.7 26.7 210 347-584 34-246 (318)
296 2xzh_A Clathrin heavy chain 1; 97.8 0.028 9.6E-07 58.2 29.1 260 566-950 48-334 (365)
297 2xzh_A Clathrin heavy chain 1; 97.7 0.055 1.9E-06 56.0 29.8 235 353-619 72-332 (365)
298 4hw6_A Hypothetical protein, I 97.7 0.007 2.4E-07 68.3 26.0 239 410-661 139-431 (433)
299 3m0c_C LDL receptor, low-densi 97.7 0.016 5.4E-07 70.3 29.4 217 343-584 419-640 (791)
300 3m0c_C LDL receptor, low-densi 97.6 0.046 1.6E-06 66.2 33.0 211 409-626 423-639 (791)
301 1bpo_A Protein (clathrin); cla 97.6 0.13 4.4E-06 55.6 32.1 261 566-950 47-333 (494)
302 1n7d_A LDL receptor, low-densi 97.5 0.00055 1.9E-08 82.6 14.7 207 834-1048 406-622 (699)
303 3kya_A Putative phosphatase; s 97.5 0.047 1.6E-06 61.5 29.2 162 349-530 140-341 (496)
304 2p9w_A MAL S 1 allergenic prot 97.5 0.021 7.1E-07 60.0 24.2 205 834-1040 13-265 (334)
305 2xtc_A F-box-like/WD repeat-co 97.5 6.2E-05 2.1E-09 60.4 3.8 35 1-35 1-35 (90)
306 1bpo_A Protein (clathrin); cla 97.5 0.11 3.7E-06 56.1 28.7 237 352-620 70-332 (494)
307 3amr_A 3-phytase; beta-propell 97.5 0.0095 3.3E-07 63.2 20.7 191 887-1094 40-262 (355)
308 2ism_A Putative oxidoreductase 97.4 0.06 2.1E-06 58.7 27.3 101 834-936 31-153 (352)
309 3a9g_A Putative uncharacterize 97.4 0.061 2.1E-06 58.7 27.2 230 834-1083 29-330 (354)
310 3a9g_A Putative uncharacterize 97.3 0.086 2.9E-06 57.5 27.2 233 347-606 28-329 (354)
311 1n7d_A LDL receptor, low-densi 97.3 0.002 6.9E-08 77.6 15.3 210 410-628 406-623 (699)
312 2p9w_A MAL S 1 allergenic prot 97.2 0.0074 2.5E-07 63.4 16.7 170 870-1040 8-215 (334)
313 2ism_A Putative oxidoreductase 97.2 0.063 2.2E-06 58.6 24.9 108 347-474 30-152 (352)
314 3ii7_A Kelch-like protein 7; p 97.1 0.039 1.3E-06 59.1 21.3 235 846-1107 13-282 (306)
315 2g8s_A Glucose/sorbosone dehyd 97.0 0.18 6.2E-06 54.9 25.9 242 835-1094 19-351 (353)
316 2vpj_A Kelch-like protein 12; 97.0 0.033 1.1E-06 59.5 19.7 235 844-1105 14-286 (301)
317 3pbp_A Nucleoporin NUP82; beta 97.0 0.022 7.5E-07 61.5 17.3 151 837-990 24-207 (452)
318 3sre_A PON1, serum paraoxonase 96.9 0.17 5.8E-06 54.5 24.2 202 834-1048 50-308 (355)
319 2xn4_A Kelch-like protein 2; s 96.8 0.11 3.7E-06 55.4 22.0 233 845-1104 16-283 (302)
320 3das_A Putative oxidoreductase 96.8 0.63 2.1E-05 49.9 27.2 202 833-1041 31-293 (347)
321 2g8s_A Glucose/sorbosone dehyd 96.7 0.51 1.7E-05 51.3 26.6 112 348-475 18-148 (353)
322 4asc_A Kelch repeat and BTB do 96.7 0.2 6.9E-06 53.6 23.1 229 852-1107 11-287 (315)
323 2vpj_A Kelch-like protein 12; 96.6 0.089 3.1E-06 56.0 19.6 188 843-1042 61-280 (301)
324 1zgk_A Kelch-like ECH-associat 96.6 0.13 4.5E-06 54.9 20.8 238 842-1106 22-296 (308)
325 1cru_A Protein (soluble quinop 96.6 0.93 3.2E-05 51.0 28.1 104 834-937 27-163 (454)
326 2uvk_A YJHT; unknown function, 96.4 0.24 8.2E-06 54.2 22.0 239 844-1107 19-352 (357)
327 3ii7_A Kelch-like protein 7; p 96.4 0.2 6.7E-06 53.5 20.7 189 843-1043 54-275 (306)
328 1xi4_A Clathrin heavy chain; a 96.3 0.33 1.1E-05 60.7 23.3 260 566-949 47-332 (1630)
329 3das_A Putative oxidoreductase 96.3 1.6 5.3E-05 46.8 27.4 114 346-475 30-158 (347)
330 2xn4_A Kelch-like protein 2; s 96.2 0.44 1.5E-05 50.5 22.1 230 421-664 16-277 (302)
331 3pbp_A Nucleoporin NUP82; beta 96.1 0.077 2.6E-06 57.4 14.5 126 349-484 67-209 (452)
332 3sre_A PON1, serum paraoxonase 96.0 2.2 7.4E-05 45.8 31.5 197 412-618 52-297 (355)
333 1tl2_A L10, protein (tachylect 95.9 0.057 1.9E-06 52.6 11.1 147 876-1033 42-203 (236)
334 3sbq_A Nitrous-oxide reductase 95.8 3.3 0.00011 46.4 29.2 101 834-937 323-454 (638)
335 2uvk_A YJHT; unknown function, 95.8 0.57 2E-05 51.1 21.0 60 987-1049 286-351 (357)
336 2be1_A Serine/threonine-protei 95.8 0.08 2.7E-06 56.5 13.0 202 888-1100 11-236 (339)
337 1tl2_A L10, protein (tachylect 95.7 0.046 1.6E-06 53.2 9.9 149 835-990 42-205 (236)
338 2woz_A Kelch repeat and BTB do 95.7 1.2 4.2E-05 47.4 22.8 224 854-1104 24-294 (318)
339 4asc_A Kelch repeat and BTB do 95.6 0.56 1.9E-05 50.1 19.6 191 841-1044 42-281 (315)
340 3s25_A Hypothetical 7-bladed b 95.6 2.9 9.8E-05 44.0 27.2 176 839-1042 58-257 (302)
341 1zgk_A Kelch-like ECH-associat 95.4 0.56 1.9E-05 49.9 18.7 188 844-1043 70-290 (308)
342 1xi4_A Clathrin heavy chain; a 95.4 0.54 1.9E-05 58.9 19.9 236 354-621 72-333 (1630)
343 2woz_A Kelch repeat and BTB do 95.0 2.5 8.5E-05 45.0 22.2 222 432-664 25-288 (318)
344 3s25_A Hypothetical 7-bladed b 94.8 4.7 0.00016 42.3 25.0 180 352-576 57-255 (302)
345 1uuj_A Platelet-activating fac 94.6 0.023 7.8E-07 45.4 3.2 52 5-56 10-63 (88)
346 1cru_A Protein (soluble quinop 94.3 3.7 0.00013 46.1 22.1 108 874-983 26-161 (454)
347 2be1_A Serine/threonine-protei 93.5 0.28 9.5E-06 52.3 10.1 188 470-665 12-233 (339)
348 3sbq_A Nitrous-oxide reductase 93.1 14 0.00047 41.6 24.2 253 843-1106 140-489 (638)
349 2wg3_C Hedgehog-interacting pr 92.8 15 0.00051 41.1 24.6 116 348-477 14-159 (463)
350 3qhy_B Beta-lactamase inhibito 92.5 8 0.00027 40.1 19.7 220 348-619 24-246 (282)
351 3qhy_B Beta-lactamase inhibito 91.9 12 0.0004 38.7 20.1 183 835-1040 64-246 (282)
352 2zwa_A Leucine carboxyl methyl 91.8 6.8 0.00023 46.9 20.5 199 419-623 396-639 (695)
353 4hvt_A Ritya.17583.B, post-pro 91.8 19 0.00065 42.8 24.0 245 351-618 132-429 (711)
354 2zwa_A Leucine carboxyl methyl 91.6 6.3 0.00022 47.2 20.0 198 843-1044 396-639 (695)
355 3b7f_A Glycosyl hydrolase, BNR 89.7 27 0.00091 38.2 26.8 263 833-1105 54-380 (394)
356 2nxp_A Transcription initiatio 85.9 1.3 4.5E-05 40.9 6.4 64 67-131 48-111 (156)
357 4hvt_A Ritya.17583.B, post-pro 85.9 22 0.00076 42.2 18.7 243 414-662 133-429 (711)
358 2j4b_A TAF5, transcription ini 83.4 0.77 2.6E-05 41.3 3.5 57 67-125 29-85 (138)
359 3q6k_A 43.2 kDa salivary prote 82.7 56 0.0019 35.1 21.0 155 855-1040 124-306 (381)
360 2j49_A Transcription initiatio 81.3 0.82 2.8E-05 41.6 2.9 54 66-121 30-83 (148)
361 2wg3_C Hedgehog-interacting pr 77.7 93 0.0032 34.6 28.9 105 835-939 15-160 (463)
362 4gq2_M Nucleoporin NUP120; bet 76.3 1.6E+02 0.0053 36.5 25.6 41 1010-1050 236-276 (950)
363 3b7f_A Glycosyl hydrolase, BNR 72.9 1.1E+02 0.0037 33.1 29.6 237 409-657 54-366 (394)
364 3kci_A Probable E3 ubiquitin-p 72.4 1.1E+02 0.0038 33.0 28.8 242 778-1040 61-345 (389)
365 3uc1_A DNA gyrase subunit A; D 68.8 1.2E+02 0.0041 31.8 24.7 208 767-995 41-279 (327)
366 4gq2_M Nucleoporin NUP120; bet 65.6 53 0.0018 40.7 14.5 39 919-957 237-275 (950)
367 1zi0_A DNA gyrase subunit A; b 64.2 1.4E+02 0.0048 31.0 25.1 211 767-995 41-277 (307)
368 2zux_A YESW protein; beta-prop 61.5 2.1E+02 0.0073 32.2 27.0 166 453-629 177-410 (591)
369 4a9v_A PHOX; hydrolase, beta-p 55.9 31 0.0011 39.1 8.9 61 966-1028 476-549 (592)
370 4fhn_B Nucleoporin NUP120; pro 55.3 53 0.0018 41.7 12.3 41 1011-1051 239-279 (1139)
371 1sqj_A OXG-RCBH, oligoxylogluc 54.9 3.4E+02 0.012 32.5 26.3 158 347-520 14-190 (789)
372 3zwu_A Alkaline phosphatase PH 54.5 26 0.00089 40.3 8.2 61 966-1028 476-549 (592)
373 2zuy_A YESX protein; beta-prop 54.4 2.8E+02 0.0096 31.4 25.5 57 575-631 354-416 (620)
374 2wpv_A GET4, UPF0363 protein Y 54.2 44 0.0015 34.7 9.2 110 38-186 17-127 (312)
375 3no0_A DNA gyrase subunit A; D 51.8 2.1E+02 0.0071 29.1 21.2 196 888-1095 36-246 (276)
376 2k9m_A RNA polymerase sigma fa 51.7 17 0.0006 32.0 4.9 89 3-104 19-122 (130)
377 3f7f_A Nucleoporin NUP120; nuc 47.0 67 0.0023 37.6 10.0 37 1011-1049 223-259 (729)
378 1suu_A DNA gyrase subunit A; t 45.1 2.8E+02 0.0096 28.7 26.7 201 728-948 7-231 (312)
379 1zi0_A DNA gyrase subunit A; b 43.8 2.9E+02 0.0099 28.5 26.4 191 419-618 1-225 (307)
380 4fhn_B Nucleoporin NUP120; pro 43.5 2.7E+02 0.0094 35.2 16.1 39 919-957 239-277 (1139)
381 3lpz_A GET4 (YOR164C homolog); 43.4 76 0.0026 33.2 8.9 110 38-186 16-129 (336)
382 3l6v_A GYRA, DNA gyrase subuni 42.6 3.4E+02 0.012 28.9 24.9 147 418-574 4-178 (370)
383 4asv_A Small glutamine-rich te 42.1 14 0.00048 29.7 2.3 19 1-19 15-33 (92)
384 3zwu_A Alkaline phosphatase PH 41.2 78 0.0027 36.4 9.4 64 543-606 477-548 (592)
385 3no0_A DNA gyrase subunit A; D 41.0 3E+02 0.01 27.8 21.4 156 768-948 24-196 (276)
386 3bu8_A Telomeric repeat-bindin 39.4 1.2E+02 0.0041 29.0 8.5 101 68-188 108-209 (235)
387 3kci_A Probable E3 ubiquitin-p 38.3 4E+02 0.014 28.5 28.4 204 876-1096 106-346 (389)
388 4d9s_A UVB-resistance protein 38.1 4.1E+02 0.014 28.6 34.4 199 876-1094 122-356 (406)
389 3mvd_K Regulator of chromosome 37.7 4.2E+02 0.014 28.6 26.7 157 875-1039 127-321 (423)
390 3mkr_A Coatomer subunit epsilo 36.3 1.2E+02 0.0041 31.0 9.5 85 5-100 64-156 (291)
391 4a9v_A PHOX; hydrolase, beta-p 36.2 1.2E+02 0.0041 34.4 9.6 65 543-607 477-549 (592)
392 3q6k_A 43.2 kDa salivary prote 34.4 4.5E+02 0.015 28.0 24.3 137 479-619 124-306 (381)
393 2d68_A FOP, FGFR1OP; alpha hel 33.8 34 0.0012 27.1 3.3 29 7-35 20-48 (82)
394 3mkr_A Coatomer subunit epsilo 33.5 2E+02 0.0069 29.3 10.7 51 10-60 38-91 (291)
395 2zux_A YESW protein; beta-prop 32.0 6E+02 0.02 28.7 26.8 187 456-663 327-532 (591)
396 3mez_B Mannose-specific lectin 27.5 2.8E+02 0.0095 23.4 9.8 25 969-994 59-83 (113)
397 1vk8_A Hypothetical protein TM 27.5 6.7 0.00023 33.0 -1.7 36 24-60 37-72 (106)
398 4gco_A Protein STI-1; structur 27.4 2.4E+02 0.0081 24.1 8.6 97 15-118 23-124 (126)
399 1kdl_A YOPD protein; yersinia, 26.9 40 0.0014 19.5 1.9 15 5-19 4-18 (26)
400 2lni_A Stress-induced-phosphop 25.9 2.9E+02 0.0098 23.0 10.0 90 7-102 18-112 (133)
401 3f7f_A Nucleoporin NUP120; nuc 25.3 2.8E+02 0.0096 32.4 10.5 37 590-628 223-259 (729)
402 2k9l_A RNA polymerase sigma fa 24.2 53 0.0018 25.6 3.0 36 2-37 27-63 (76)
403 3mez_A Mannose-specific lectin 23.5 3.2E+02 0.011 23.0 8.2 24 969-992 52-75 (111)
404 3l6v_A GYRA, DNA gyrase subuni 23.3 6.8E+02 0.023 26.5 26.2 192 843-1042 5-267 (370)
405 1oyi_A Double-stranded RNA-bin 22.0 59 0.002 25.8 2.8 30 6-37 16-45 (82)
406 3elq_A Arylsulfate sulfotransf 21.9 9E+02 0.031 27.3 15.9 133 970-1107 211-396 (571)
407 4gof_A Small glutamine-rich te 21.8 42 0.0014 23.9 1.7 15 5-19 2-16 (52)
408 3qou_A Protein YBBN; thioredox 21.2 3.6E+02 0.012 27.1 9.9 101 14-121 126-231 (287)
409 4ga2_A E3 SUMO-protein ligase 20.3 3.4E+02 0.012 23.8 8.4 94 21-121 13-111 (150)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.9e-66 Score=631.36 Aligned_cols=562 Identities=23% Similarity=0.374 Sum_probs=479.7
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+|++.|+|++|||||++ ||+|+.|++|+|||. +++.+. .+.+|.+.|.+++|+|||++|
T Consensus 14 GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspdg~~l 72 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPDGQTI 72 (577)
T ss_dssp CCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTTSSEE
T ss_pred CCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCCCCEE
Confidence 59999999999999984 999999999999995 555543 477999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEe
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVC 504 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~ 504 (1131)
|+++.|++|+|||+. ++.+ ..+.+|...|.+++|+||++ +|++++.|+.+++|+..........+|...|.++.
T Consensus 73 as~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (577)
T 2ymu_A 73 ASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 146 (577)
T ss_dssp EEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEE
T ss_pred EEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccccceeeeccCCCCceeeee
Confidence 999999999999964 4433 46889999999999999999 89999999999999987888888899999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEe
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 584 (1131)
+.+ ++..+++++.++.+++|+... ........+...+..+.++|+++++++++. ++.|++||. +++.+..+.
T Consensus 147 ~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~~~~~~ 218 (577)
T 2ymu_A 147 FSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLT 218 (577)
T ss_dssp ECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCEEEEEE
T ss_pred eec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcEEEEEe
Confidence 865 557899999999999998654 445556677888999999999999999986 899999995 577888888
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 585 GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|.. .+.+++|+|++.+|++++.|+.|++||.. ++.+..+..+. ..|.+++|+|+++.+++++.|+.|++|+....
T Consensus 219 ~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~--~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~ 294 (577)
T 2ymu_A 219 GHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHS--SSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ 294 (577)
T ss_dssp CCSS-CEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTSC
T ss_pred cCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCC--CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc
Confidence 8765 89999999999999999999999999964 56666666554 48999999999999999999999999985322
Q ss_pred chhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcce
Q 001178 665 LRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPW 744 (1131)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w 744 (1131)
...
T Consensus 295 --~~~--------------------------------------------------------------------------- 297 (577)
T 2ymu_A 295 --LLQ--------------------------------------------------------------------------- 297 (577)
T ss_dssp --EEE---------------------------------------------------------------------------
T ss_pred --EEE---------------------------------------------------------------------------
Confidence 000
Q ss_pred eeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCccc
Q 001178 745 ELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLM 824 (1131)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 824 (1131)
.+ .+|...|.+++|+|++..+++++.|+.+++|+...... .
T Consensus 298 --------------~~---~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~----------------------~ 338 (577)
T 2ymu_A 298 --------------TL---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL----------------------Q 338 (577)
T ss_dssp --------------EE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE----------------------E
T ss_pred --------------EE---ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee----------------------E
Confidence 00 22778899999999999999999999999998543110 0
Q ss_pred ccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001178 825 TNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1131)
Q Consensus 825 ~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd 903 (1131)
. + .+|...+.+++|+|+|++|++++ ++.|++||. +++.+..+..|...|++++|+| ++++|++++.|+.|++||
T Consensus 339 ~--~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~ 413 (577)
T 2ymu_A 339 T--L-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN 413 (577)
T ss_dssp E--E-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred E--E-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEe
Confidence 0 1 15788999999999999999998 899999995 5678889999999999999999 899999999999999999
Q ss_pred eecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE
Q 001178 904 VRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1131)
Q Consensus 904 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 983 (1131)
. +++.+..+.+|...|++++|+||+++|++++.|++|++||... +.... ..+ +...+.+++|+|++++|+++
T Consensus 414 ~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~-----~~~-~~~~v~~~~~spd~~~las~ 485 (577)
T 2ymu_A 414 R-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQT-----LTG-HSSSVRGVAFSPDGQTIASA 485 (577)
T ss_dssp T-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEE-----EEC-CSSCEEEEEECTTSCEEEEE
T ss_pred C-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEE-----EcC-CCCCEEEEEEcCCCCEEEEE
Confidence 5 6778889999999999999999999999999999999999754 22211 112 23789999999999999986
Q ss_pred -eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCC
Q 001178 984 -HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQ 1062 (1131)
Q Consensus 984 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1131)
.|+.|++||. +++++..+.+| ...|++++|+|||++|++++.||.|++||+ +++.+..+.+ |..
T Consensus 486 ~~d~~i~iw~~-~~~~~~~~~~h---~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~----------h~~ 550 (577)
T 2ymu_A 486 SDDKTVKLWNR-NGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG----------HSS 550 (577)
T ss_dssp ETTSEEEEEET-TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC----------CSS
T ss_pred eCCCEEEEEcC-CCCEEEEEeCC---CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC----------CCC
Confidence 5899999995 67888888776 789999999999999999999999999996 5777776654 334
Q ss_pred ccccEEEEEcCCCCCeEEEEecCCcEEEEe
Q 001178 1063 TVFPLVVTSHPQEPNQLAVGLTDGSVKVIE 1092 (1131)
Q Consensus 1063 ~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~ 1092 (1131)
.|. +++|+| |+.+|+|++.|++|++||
T Consensus 551 ~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 551 SVW--GVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 444 688999 678999999999999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.8e-64 Score=608.77 Aligned_cols=573 Identities=14% Similarity=0.159 Sum_probs=457.1
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
+.+.+.+++|||||+ +||+++ ++.|+|||+.+++... ++.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 567889999999998 478877 5799999998776554 5789999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC----CcEEEEeCCCceeEEecCCccCeE
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD----KLIRVWDLSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~h~~~v~ 501 (1131)
+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+||++ .|++++.+ +.|++|| .++.+..+.+|...|.
T Consensus 76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMN 151 (611)
T ss_dssp EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEE
T ss_pred EEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee-CCCCcceecCCCCCce
Confidence 9999999999999765533 2336789999999999999999 67777754 4788888 5667788999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeE
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 581 (1131)
+++|+|... ..|++++.|++|++||....+....+..|...|.+++|+|+|++|++++. |+.|++||..+++.+.
T Consensus 152 ~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 152 SVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG 226 (611)
T ss_dssp EEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEee
Confidence 999976432 36999999999999999988888889999999999999999999999986 9999999999999888
Q ss_pred EEe-------cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCC-CCCcceEEEcCCCCEEEEEECC
Q 001178 582 TYI-------GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG-LPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 582 ~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
.+. +|. ..|.+++|+|++++|++++.|++|++||+.+++.+..+..+.. ......+.| ++..+++++.|
T Consensus 227 ~~~~~~~~~~~h~-~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d 303 (611)
T 1nr0_A 227 VFEDDSLKNVAHS-GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN 303 (611)
T ss_dssp ECBCTTSSSCSSS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT
T ss_pred eeccccccccccC-CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCC
Confidence 874 444 4899999999999999999999999999999998888765421 112344555 67889999999
Q ss_pred CcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCcee
Q 001178 654 QGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRN 733 (1131)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 733 (1131)
+.+++|+...+. ...
T Consensus 304 ~~i~~~~~~~~~-~~~---------------------------------------------------------------- 318 (611)
T 1nr0_A 304 GFINFVNPELGS-IDQ---------------------------------------------------------------- 318 (611)
T ss_dssp CCEEEEETTTTE-EEE----------------------------------------------------------------
T ss_pred CcEEEEeCCCCC-cce----------------------------------------------------------------
Confidence 999999975541 000
Q ss_pred ccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeec
Q 001178 734 LEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAP 813 (1131)
Q Consensus 734 ~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 813 (1131)
.+ .+|...|.+++|+|+|+.|++++.|+++++||+..+
T Consensus 319 -------------------------~~---~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~-------------- 356 (611)
T 1nr0_A 319 -------------------------VR---YGHNKAITALSSSADGKTLFSADAEGHINSWDISTG-------------- 356 (611)
T ss_dssp -------------------------EE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------------
T ss_pred -------------------------EE---cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC--------------
Confidence 00 237889999999999999999999999999987542
Q ss_pred eeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEE---EeCCCCCeeEEEEeCCCCcEE
Q 001178 814 QHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTT---FMSPPPASTFLAFHPQDNNII 890 (1131)
Q Consensus 814 ~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~---~~~~~~~i~~l~~s~~~~~~l 890 (1131)
.... .+...|...|.+++|++++.++..+.|+++++|++.++..... .........+++|+| ++.++
T Consensus 357 --------~~~~-~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~ 426 (611)
T 1nr0_A 357 --------ISNR-VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIA 426 (611)
T ss_dssp --------CEEE-CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCE
T ss_pred --------ceee-ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEE
Confidence 1111 1123588999999999887655444499999999887543210 011234568899999 77777
Q ss_pred EEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceE
Q 001178 891 AIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETR 970 (1131)
Q Consensus 891 a~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~ 970 (1131)
+++ .++.+++|+ .++ +..+. |...+.+++|+|||++|++++.|++|++||+.++..... .. ..+...|.+
T Consensus 427 ~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~---~~--~~h~~~v~~ 496 (611)
T 1nr0_A 427 VAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV---KT--IVHPAEITS 496 (611)
T ss_dssp EEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE---EE--EECSSCEEE
T ss_pred EEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee---ec--cCCCCceEE
Confidence 666 567899998 444 44554 888999999999999999999999999999987543211 11 123478999
Q ss_pred EEEcCCCcEEEEEe-CCeEEEEeCCC-ccccee-eecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceee--
Q 001178 971 VQFHSDQVRLLVNH-ETQLAIYDGSK-MECIRQ-WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC-- 1045 (1131)
Q Consensus 971 v~~s~d~~~l~~~~-d~~i~vwd~~~-~~~~~~-~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-- 1045 (1131)
++|+|||++|++++ |+.|++|++.+ ++.+.. ... .|...|++++|+|||++|++|+.|++|++||+.++....
T Consensus 497 v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~--~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~ 574 (611)
T 1nr0_A 497 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWT--FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 574 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred EEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeee--ecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccch
Confidence 99999999999864 89999999987 555443 122 248899999999999999999999999999998875322
Q ss_pred EecCCccccCCCCCC-CCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1046 RIAPSAYMSQASPNS-SQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1046 ~~~~~~~~~~~~~~~-~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
.+.. | ...| .+++|+| ++. |++++.|++|++|++.
T Consensus 575 ~~~~----------h~~~~v--~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 575 IKGA----------HAMSSV--NSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTS----------STTSCE--EEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred hhcc----------CcccCe--eEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 2221 2 2334 4788998 455 9999999999999974
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.7e-62 Score=594.66 Aligned_cols=562 Identities=15% Similarity=0.182 Sum_probs=449.7
Q ss_pred CccccccCCCCCcccccCCC-------cccceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCccccccc
Q 001178 316 SVDEATYPVPSQQATWSLDD-------LPRAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP 387 (1131)
Q Consensus 316 ~~~~~~~s~~~~~~~~~~~~-------~~~~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~ 387 (1131)
.+..++|+|+|+.++...+. .......++ +|.+.|++++|||||+ +||+|+.||+|+|||+.+++....
T Consensus 20 ~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~-- 96 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK-- 96 (611)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE--
T ss_pred ceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee--
Confidence 34457888888644332221 123344455 5999999999999998 599999999999999976654321
Q ss_pred ceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCC----CeEEEEEecCCCccceeeeeecCcCCeeEEEEe
Q 001178 388 FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS 463 (1131)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s 463 (1131)
..+.+|.+.|.+++|+|||++||+++.+ ++|++||. ++... .+.+|...|++++|+
T Consensus 97 ---------------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~---~l~gh~~~v~~v~f~ 156 (611)
T 1nr0_A 97 ---------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNG---NLTGQARAMNSVDFK 156 (611)
T ss_dssp ---------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCB---CCCCCSSCEEEEEEC
T ss_pred ---------------EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcc---eecCCCCCceEEEEC
Confidence 1466899999999999999999998865 47888874 44333 578999999999999
Q ss_pred cCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec----
Q 001178 464 YPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---- 538 (1131)
Q Consensus 464 ~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---- 538 (1131)
|++.. .|++|+.|++|++|| ..++++..+.+|...|.+++|+| ++++|++++.|++|++||+.+++....+.
T Consensus 157 p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~ 233 (611)
T 1nr0_A 157 PSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 233 (611)
T ss_dssp SSSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred CCCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence 99874 599999999999999 77888899999999999999965 56899999999999999999888777663
Q ss_pred ---CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccC--CceEEEEEeCCCCEEEEEEcCCcEE
Q 001178 539 ---APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK--KSAGVVQFDTTRNRILAAGEDNQIK 613 (1131)
Q Consensus 539 ---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~ 613 (1131)
.|...|.+++|+|+|++|++++. |+.|++||+.+++.+..+..+.. .....+.| +++.+++++.|+.++
T Consensus 234 ~~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~ 307 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFIN 307 (611)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEE
T ss_pred cccccCCCEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEE
Confidence 68889999999999999999987 99999999999999888865422 13344555 678899999999999
Q ss_pred EEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccce
Q 001178 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVV 693 (1131)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1131)
+|+...++....+..|. ..|.+++|+|+|++|++++.|+.|++||+.++.. ...+
T Consensus 308 ~~~~~~~~~~~~~~gh~--~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~-~~~~---------------------- 362 (611)
T 1nr0_A 308 FVNPELGSIDQVRYGHN--KAITALSSSADGKTLFSADAEGHINSWDISTGIS-NRVF---------------------- 362 (611)
T ss_dssp EEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EECS----------------------
T ss_pred EEeCCCCCcceEEcCCC--CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-eeec----------------------
Confidence 99999998777766554 4899999999999999999999999999876511 0000
Q ss_pred ecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEE
Q 001178 694 TTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARL 773 (1131)
Q Consensus 694 ~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 773 (1131)
...|...|.++
T Consensus 363 ---------------------------------------------------------------------~~~h~~~v~~~ 373 (611)
T 1nr0_A 363 ---------------------------------------------------------------------PDVHATMITGI 373 (611)
T ss_dssp ---------------------------------------------------------------------SCSCSSCEEEE
T ss_pred ---------------------------------------------------------------------ccCCcceEEEE
Confidence 02277889999
Q ss_pred EeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeC
Q 001178 774 LYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG 853 (1131)
Q Consensus 774 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d 853 (1131)
+|++++ .+++++.|+.+++|+............ .. .......+++|+|+|+.++++.+
T Consensus 374 ~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~-----------------~~----~~~~~~~~~~~s~dg~~~~~~~~ 431 (611)
T 1nr0_A 374 KTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAV-----------------AN----KLSSQPLGLAVSADGDIAVAACY 431 (611)
T ss_dssp EECTTS-CEEEEETTTEEEEECSSSSSSCTTSCC-----------------EE----ECSSCEEEEEECTTSSCEEEEES
T ss_pred EECCCC-cEEEEEcCCceEEeecCCcccccccee-----------------ee----ecCCCCcEEEEeCCCcEEEEEeC
Confidence 999766 688899999999998765322111000 00 12345678999999999988889
Q ss_pred CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeeccee--EEeecccccCeeEEEEccCCCE
Q 001178 854 GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV--KTKLKGHQKHITGLAFSTNLNI 931 (1131)
Q Consensus 854 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~s~dg~~ 931 (1131)
+.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|++|++||+.++.. +.. .+|.+.|++++|||||++
T Consensus 432 ~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~ 505 (611)
T 1nr0_A 432 KHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAF 505 (611)
T ss_dssp SEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSE
T ss_pred ceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCE
Confidence 9999999 344 55554 778899999999 899999999999999999987654 233 789999999999999999
Q ss_pred EEEEeCCCcEEEEEcCC-CceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccc--eeeecCCC
Q 001178 932 LVSSGSDAQLIFWNTDT-WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECI--RQWVPQDV 1007 (1131)
Q Consensus 932 l~s~~~Dg~v~lwd~~~-~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~--~~~~~~~~ 1007 (1131)
|++++.|++|++|++.+ ++.... .....+...|.+++|+|||++|++++ |+.|++|++.++... ..+ ..
T Consensus 506 las~s~d~~v~~w~~~~~~~~~~~----~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~---~~ 578 (611)
T 1nr0_A 506 LVATDQSRKVIPYSVANNFELAHT----NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK---GA 578 (611)
T ss_dssp EEEEETTSCEEEEEGGGTTEESCC----CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET---TS
T ss_pred EEEEcCCCCEEEEEcCCCCceeee----eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh---cc
Confidence 99999999999999987 332111 01222457899999999999999865 999999999886532 232 23
Q ss_pred C-CCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 1008 L-SSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 1008 ~-~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
| ...|++++|+||++ |++++.|++|++|++.
T Consensus 579 h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 579 HAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp STTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 4 68999999999999 9999999999999973
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.8e-62 Score=592.60 Aligned_cols=527 Identities=23% Similarity=0.385 Sum_probs=450.7
Q ss_pred ceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 339 AVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 339 ~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
++++++ +|...|++++|||||+ +||+|+.|++|+|||+. ++.+. .+.+|...|.+++|
T Consensus 48 ~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~~-~~~~~-------------------~~~~~~~~v~~~~~ 106 (577)
T 2ymu_A 48 QLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQ-------------------TLTGHSSSVRGVAF 106 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-SCEEE-------------------EECCCSSCEEEEEE
T ss_pred CEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECC-CCEEE-------------------EEECCCCCEEEEEE
Confidence 344455 4999999999999998 59999999999999964 44443 46799999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCc
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHE 497 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~ 497 (1131)
+||+++|++++.|+.+++|+..... .....+|...|.++.|+|++. .+++++.++.+++|+...........|.
T Consensus 107 s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (577)
T 2ymu_A 107 SPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHS 180 (577)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECTTSCEEEEEECCS
T ss_pred CCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeeecCCc--cceecccccceeccccceeeeeeccCCC
Confidence 9999999999999999999976543 235678999999999999999 7899999999999998888888888999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1131)
..|.++++.+ ++.++++++.|+.|++||. +.+....+..+...|.+++|+|++++|++++. ++.|++||. ++
T Consensus 181 ~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~----d~~i~~w~~-~~ 252 (577)
T 2ymu_A 181 SSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD----DKTVKLWNR-NG 252 (577)
T ss_dssp SCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECT-TS
T ss_pred cceeeeeecC--CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeC----CCEEEEEeC-CC
Confidence 9999999865 5679999999999999996 45666678888999999999999999999986 899999995 57
Q ss_pred eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001178 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1131)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~ 657 (1131)
+.+..+.+|.. .+.+++|+|+++.+++++.|+.|++|+.. ++.+..+..+. ..|.+++|+|+++++++++.|+.|+
T Consensus 253 ~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~--~~v~~~~~~~~~~~l~t~~~d~~i~ 328 (577)
T 2ymu_A 253 QLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHS--SSVWGVAFSPDGQTIASASDDKTVK 328 (577)
T ss_dssp CEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCC--CCeEEEEECCCCCEEEEEeCCCeEE
Confidence 77888888665 89999999999999999999999999964 56666665544 4899999999999999999999999
Q ss_pred EEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceecccc
Q 001178 658 ILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDI 737 (1131)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 737 (1131)
+|+..... ..
T Consensus 329 ~w~~~~~~--~~-------------------------------------------------------------------- 338 (577)
T 2ymu_A 329 LWNRNGQH--LQ-------------------------------------------------------------------- 338 (577)
T ss_dssp EEETTSCE--EE--------------------------------------------------------------------
T ss_pred EEeCCCCe--eE--------------------------------------------------------------------
Confidence 99964330 00
Q ss_pred CCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeec
Q 001178 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQ 817 (1131)
Q Consensus 738 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 817 (1131)
.+ ..|...+.+++|+|+|..+++++.|+.+++|+... .
T Consensus 339 ---------------------~~---~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-------~----------- 376 (577)
T 2ymu_A 339 ---------------------TL---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-------Q----------- 376 (577)
T ss_dssp ---------------------EE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-------C-----------
T ss_pred ---------------------EE---eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-------C-----------
Confidence 00 12677889999999999999999999999998422 1
Q ss_pred CCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC
Q 001178 818 PSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED 896 (1131)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d 896 (1131)
.+.. + .+|...|.+++|+|||++|++++ |+.|++||. +++.+..+.+|...|.+++|+| ++++|++++.|
T Consensus 377 -----~~~~-~-~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d 447 (577)
T 2ymu_A 377 -----LLQT-L-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDD 447 (577)
T ss_dssp -----EEEE-E-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETT
T ss_pred -----EEEE-e-cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCC
Confidence 1110 1 15788999999999999999998 899999995 5678889999999999999999 89999999999
Q ss_pred CcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCC
Q 001178 897 STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD 976 (1131)
Q Consensus 897 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 976 (1131)
+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... +.... ..+ +...|.+++|+||
T Consensus 448 ~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~~~~~-----~~~-h~~~v~~l~~s~d 519 (577)
T 2ymu_A 448 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQT-----LTG-HSSSVRGVAFSPD 519 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-CEEEE-----EEC-CSSCEEEEEECTT
T ss_pred CEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-CEEEE-----EeC-CCCCEEEEEEcCC
Confidence 99999996 5678889999999999999999999999999999999999653 33222 122 3378999999999
Q ss_pred CcEEEEE-eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 001178 977 QVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037 (1131)
Q Consensus 977 ~~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd 1037 (1131)
+++|+++ .|+.|++||. +++++..+.+| ...|++++|+|||++|++++.|++|++||
T Consensus 520 g~~l~s~~~dg~v~lwd~-~~~~~~~~~~h---~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 520 GQTIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSEEEEECT-TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEECcCEEEEEeC-CCCEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999986 4899999996 57888888776 88999999999999999999999999997
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-61 Score=643.65 Aligned_cols=616 Identities=13% Similarity=0.160 Sum_probs=501.5
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|||++
T Consensus 612 ~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 671 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLL-------------------DIKAHEDEVLCCAFSSDDSY 671 (1249)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTSSE
T ss_pred ecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEE-------------------EeccCCCCEEEEEEecCCCE
Confidence 35999999999999998 58999999999999999988765 46799999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 502 (1131)
||+|+.|++|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++|| .+++++..+.+|.+.|.+
T Consensus 672 l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~ 748 (1249)
T 3sfz_A 672 IATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH 748 (1249)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred EEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence 9999999999999999987554 678999999999999976555899999999999999 888999999999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC-------------CceEEEEEEccCCCEEEEEeecCCCCceE
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-------------GLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 569 (1131)
++|++ ++.++++++.||.|++||+.+......+... ...+.+++|+|+|+.+++++ ++.+
T Consensus 749 ~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v 821 (1249)
T 3sfz_A 749 CRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKV 821 (1249)
T ss_dssp EEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEE
T ss_pred EEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcE
Confidence 99965 5679999999999999999887766544321 22678899999999999987 6789
Q ss_pred EEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEE
Q 001178 570 VEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649 (1131)
Q Consensus 570 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~ 649 (1131)
.+||..++..+..+...+...+.+++|+|++.++++++.||.|++||+.++..+..+..|.. .|.+++|+|+++++++
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSFLT 899 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEE
T ss_pred EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEEEE
Confidence 99999999988888755666899999999999999999999999999999999888876554 8999999999999999
Q ss_pred EECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCC
Q 001178 650 TTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIE 729 (1131)
Q Consensus 650 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 729 (1131)
++.||.|++|++.+.... ........ .. ..+.+ ..
T Consensus 900 ~s~dg~v~vw~~~~~~~~-~~~~~~~~-~~--------------~~~~~-----------------------------~~ 934 (1249)
T 3sfz_A 900 ASDDQTIRVWETKKVCKN-SAIVLKQE-ID--------------VVFQE-----------------------------NE 934 (1249)
T ss_dssp EETTSCEEEEEHHHHHSC-CSSSEEEE-EE--------------EEEET-----------------------------TE
T ss_pred EeCCCeEEEEEcccccee-eeecccce-ee--------------EEEcC-----------------------------CC
Confidence 999999999997543110 00000000 00 00111 11
Q ss_pred CceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccce
Q 001178 730 KPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATA 809 (1131)
Q Consensus 730 ~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 809 (1131)
..++.....+.+.++..... .... .+...+.+++++|++..+++++.+|.+++|++..+.
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~--------- 994 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTG----QIDY-------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR--------- 994 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSC----CEEE-------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS---------
T ss_pred cEEEEecCCcceEEEecCcc----eEEE-------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc---------
Confidence 22223333334444433221 1110 135679999999999999999999999999875421
Q ss_pred eeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCc
Q 001178 810 AVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNN 888 (1131)
Q Consensus 810 ~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 888 (1131)
.... ..+|...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...|.+++|+| ++.
T Consensus 995 -------------~~~~--~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~~ 1057 (1249)
T 3sfz_A 995 -------------VFSS--GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DSR 1057 (1249)
T ss_dssp -------------CEEE--CCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SSE
T ss_pred -------------eeee--cccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CCc
Confidence 1111 125889999999999999999998 8999999999988764 457889999999999 654
Q ss_pred EEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCc
Q 001178 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1131)
Q Consensus 889 ~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1131)
+++++.||.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.|++|++||+.+++.... ..+ +...+
T Consensus 1058 -l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-----l~~-h~~~v 1130 (1249)
T 3sfz_A 1058 -LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-----LKG-HNGCV 1130 (1249)
T ss_dssp -EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-----CCC-CSSCE
T ss_pred -EEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee-----ecc-CCCcE
Confidence 67899999999999999999999999999999999999999999999999999999998764322 222 33789
Q ss_pred eEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeec------CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 001178 969 TRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVP------QDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1131)
Q Consensus 969 ~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~------~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~ 1041 (1131)
.+++|+|+|.+|++++ ||.|++||+.+++.+..+.+ ...|...|++++|+|||++|++++ |.|++||+.++
T Consensus 1131 ~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1131 RCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208 (1249)
T ss_dssp EEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCC
Confidence 9999999999999875 89999999999988776511 123478999999999999999885 89999999999
Q ss_pred ceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1042 RLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
+.+..+..+ ...+. ++.|+| ++.+|++++.||.|++|++.+
T Consensus 1209 ~~~~~~~~~----------~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1209 DSSQTFYTN----------GTNLK--KIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp BCCCCCCCS----------SCCCC--CCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred ceeeeeecc----------CCccc--EEEECC-CCCEEEEecCCcEEEEEeecC
Confidence 887665432 22233 478888 678999999999999999853
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-57 Score=558.82 Aligned_cols=559 Identities=11% Similarity=0.184 Sum_probs=472.6
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCC----cccccccceeecccccccceeceeccCCCCC-EEEEEEcC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR----ERLVSKPFKIWDMSNCSMMLQAAIVKDSSIS-VSRVAWSP 419 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~~~~sp 419 (1131)
.|.+.|++++|||||+ +||+|+ ++.|+|||+.++ +... .+.+|... |.+++|+|
T Consensus 16 ~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 3889999999999998 477777 889999999987 4443 47799999 99999999
Q ss_pred --CCCEEEEEeCCCeEEEEEecCCC-----ccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC----CcEEEEeCCCc
Q 001178 420 --DGNFIGVAFTKHLIHLYTYQGSN-----DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD----KLIRVWDLSGR 488 (1131)
Q Consensus 420 --dg~~las~~~d~~i~vwd~~~~~-----~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d----~~i~iwd~~~~ 488 (1131)
|+++||+|+.||+|++||+.+++ .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| .++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d-~~~ 151 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD-SGN 151 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT-TCC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE-CCC
Confidence 99999999999999999997651 1223346788999999999999999 78888887 7899999 677
Q ss_pred eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCc---eEEEEEEccC-CCEEEEEeecCC
Q 001178 489 KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL---WCTTMLYSAD-GSRLFSCGTSKE 564 (1131)
Q Consensus 489 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~-g~~l~~~~~~~~ 564 (1131)
.+..+.+|...|.+++|++... ..+++++.|+.|++||+.+.+....+..|.. .|.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---
T ss_pred cceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---
Confidence 8899999999999999976432 3899999999999999999998888988888 9999999999 999999986
Q ss_pred CCceEEEEeCCCCeeeEEE-e---cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCC--CCCcceE
Q 001178 565 GDSHLVEWNESEGALKRTY-I---GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG--LPSLPRL 638 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~-~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~i~~v 638 (1131)
++.|++||+.+++.+..+ . .| ...+.+++|+ ++.++++++.|+.|++||+.+++.+..+..+.. ...+.++
T Consensus 228 -dg~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 228 -DRKISCFDGKSGEFLKYIEDDQEPV-QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCC-CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred -CCeEEEEECCCCCEeEEeccccccc-CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 899999999999999888 4 44 4489999999 999999999999999999999999888876521 1256777
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccc
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l 718 (1131)
.|+ ++.++++++.||.|++|++.++ .....+.+|...+... .+ |
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~~-------------~~-~-------------------- 348 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITAL-------------TV-N-------------------- 348 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEEE-------------ET-T--------------------
T ss_pred EeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEEE-------------Ee-c--------------------
Confidence 775 8999999999999999998775 3444444443332210 11 1
Q ss_pred cCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecC
Q 001178 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNR 798 (1131)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 798 (1131)
+ +++++.|+.+++|++. .+. ..|...|.+++| +++..+++++.|+.+++|++..
T Consensus 349 ---------~---l~~~~~dg~i~~w~~~---------~~~----~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~ 402 (615)
T 1pgu_A 349 ---------P---LISGSYDGRIMEWSSS---------SMH----QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITK 402 (615)
T ss_dssp ---------T---TEEEETTSCEEETTTT---------EEE----CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEE
T ss_pred ---------C---cEEECCCCeEEEEEch---------hhc----CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEccc
Confidence 1 7889999999999986 122 348899999999 7788999999999999998754
Q ss_pred CCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCee
Q 001178 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPAST 878 (1131)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 878 (1131)
... ...+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.
T Consensus 403 ~~~-------------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 450 (615)
T 1pgu_A 403 HEF-------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGS 450 (615)
T ss_dssp EEC-------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEE
T ss_pred Ccc-------------------------------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCce
Confidence 211 125788999999999999888999999999999998887 788899
Q ss_pred EEEEeCCCCcEEEEEeC-CCcEEEEEeecceeE-EeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001178 879 FLAFHPQDNNIIAIGME-DSTIQIYNVRVDEVK-TKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956 (1131)
Q Consensus 879 ~l~~s~~~~~~la~g~~-dg~I~iwd~~~~~~~-~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~ 956 (1131)
+++|+ +.+|++++. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++....
T Consensus 451 ~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~-- 525 (615)
T 1pgu_A 451 AVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS-- 525 (615)
T ss_dssp EEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC--
T ss_pred EEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeE--
Confidence 99998 679999999 999999999988766 77889999999999999999999999999999999998765332
Q ss_pred eecCCCCCCCCceEEEEcC----------CCcEEEEEe-CCeEEEEeCCCc-ccceeeecCCCCCCCeEEEEEccCCCEE
Q 001178 957 IQLPAGKLPVGETRVQFHS----------DQVRLLVNH-ETQLAIYDGSKM-ECIRQWVPQDVLSSPISSAAYSCNSQLI 1024 (1131)
Q Consensus 957 ~~~~~~~~~~~v~~v~~s~----------d~~~l~~~~-d~~i~vwd~~~~-~~~~~~~~~~~~~~~v~~i~~s~dg~~l 1024 (1131)
..+.+...+.+++|+| ++.+|++++ |+.|++||+.++ +.+..+..| ...|++++|+||++ |
T Consensus 526 ---~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~-l 598 (615)
T 1pgu_A 526 ---RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH---KDGVNNLLWETPST-L 598 (615)
T ss_dssp ---CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS---TTCEEEEEEEETTE-E
T ss_pred ---eecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC---ccceEEEEEcCCCC-e
Confidence 2232448899999999 999999875 899999999987 677766655 88999999999999 9
Q ss_pred EEEecCCcEEEEECCC
Q 001178 1025 YATFTDGSIGVFDADS 1040 (1131)
Q Consensus 1025 ~s~~~dg~i~vwd~~~ 1040 (1131)
++++.||.|++|++++
T Consensus 599 ~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 599 VSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEETTSCEEEEEEC-
T ss_pred EEecCCceEEEEeeec
Confidence 9999999999999875
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.2e-56 Score=590.38 Aligned_cols=571 Identities=18% Similarity=0.264 Sum_probs=470.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|.+.|++++|+|||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|+.|+||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 577999999999999999999999999999999999987544 6789999999999999999 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
| .+++.+..+.+|...|.+++|++..++.++++++.||.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9 88999999999999999999998777789999999999999999999999999999999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeeEEEeccc------------CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFR------------KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG 630 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1131)
++.|++||+.+++....+.... ...+.+++|+|++..+++++ ++.+.+||+.++..+..+.. +
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~-~ 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT-G 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-S
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcC-C
Confidence 8999999999988777664321 22577899999999999887 68999999999988877653 3
Q ss_pred CCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCC
Q 001178 631 GLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSS 710 (1131)
Q Consensus 631 ~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~ 710 (1131)
+...|.+++|+|+++++++++.||.|++|++.++. ....+
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-~~~~~--------------------------------------- 878 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-KVADC--------------------------------------- 878 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-EEEEE---------------------------------------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-eeeec---------------------------------------
Confidence 34489999999999999999999999999987651 11111
Q ss_pred CCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecce
Q 001178 711 PARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGV 790 (1131)
Q Consensus 711 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 790 (1131)
.+|...|.+++|+|+|..+++++.||.
T Consensus 879 -----------------------------------------------------~~h~~~v~~v~~spdg~~l~s~s~dg~ 905 (1249)
T 3sfz_A 879 -----------------------------------------------------RGHLSWVHGVMFSPDGSSFLTASDDQT 905 (1249)
T ss_dssp -----------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred -----------------------------------------------------CCCccceEEEEECCCCCEEEEEeCCCe
Confidence 126677888888888888888888888
Q ss_pred eeEEeecCCCCCCCCccceee------------------eceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe
Q 001178 791 QKLWKWNRTEQNPSGKATAAV------------------APQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG 852 (1131)
Q Consensus 791 i~iw~~~~~~~~~~~~~~~~~------------------~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 852 (1131)
+++|++............... ...++...++.... .+...+.+++|+|+++++++++
T Consensus 906 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~sp~g~~l~~g~ 980 (1249)
T 3sfz_A 906 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY-----LPEAQVSCCCLSPHLEYVAFGD 980 (1249)
T ss_dssp EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE-----ECCSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE-----cccCcEEEEEEcCCCCEEEEEc
Confidence 888886543211110000000 11223333333222 2466799999999999999999
Q ss_pred -CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCE
Q 001178 853 -GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNI 931 (1131)
Q Consensus 853 -dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 931 (1131)
+|.|++||+.+++....+.+|...|++++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|++++ .
T Consensus 981 ~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~ 1057 (1249)
T 3sfz_A 981 EDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-R 1057 (1249)
T ss_dssp TTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-E
T ss_pred CCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-c
Confidence 89999999999999999999999999999999 8999999999999999999998876 466899999999999975 6
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCcccceeeecCCCCCC
Q 001178 932 LVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSS 1010 (1131)
Q Consensus 932 l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~ 1010 (1131)
+++++.|+.|++||+.+++...... + +...+.+++|+|++.+++++ .|+.|++||+.+++.+..+..| ..
T Consensus 1058 l~~~~~dg~v~vwd~~~~~~~~~~~-----~-~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h---~~ 1128 (1249)
T 3sfz_A 1058 LLSWSFDGTVKVWNVITGRIERDFT-----C-HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH---NG 1128 (1249)
T ss_dssp EEEEESSSEEEEEETTTTCCCEEEE-----C-CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCC---SS
T ss_pred EEEEECCCcEEEEECCCCceeEEEc-----c-cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccC---CC
Confidence 7899999999999999877543322 1 23679999999999999986 4899999999999998888776 78
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEE
Q 001178 1011 PISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV 1090 (1131)
Q Consensus 1011 ~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~i 1090 (1131)
.|++++|+|||++|++++.||.|++||+.+++.+..+........ ...|...|. .++|+| ++.+|++++ |+|++
T Consensus 1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~--~l~fs~-dg~~l~s~~--g~v~v 1202 (1249)
T 3sfz_A 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG-TATHGGWVT--DVCFSP-DSKTLVSAG--GYLKW 1202 (1249)
T ss_dssp CEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--------CCSCCC--EEEECT-TSSCEEEES--SSEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccccc-ccccCceEE--EEEECC-CCCEEEECC--CeEEE
Confidence 999999999999999999999999999999988766533221111 112334444 689999 667888886 89999
Q ss_pred EecCCCccccc
Q 001178 1091 IEPSETERKWG 1101 (1131)
Q Consensus 1091 W~~~~~~~~w~ 1101 (1131)
||+.+++....
T Consensus 1203 wd~~~g~~~~~ 1213 (1249)
T 3sfz_A 1203 WNVATGDSSQT 1213 (1249)
T ss_dssp BCSSSCBCCCC
T ss_pred EECCCCceeee
Confidence 99998875433
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-56 Score=556.01 Aligned_cols=599 Identities=10% Similarity=0.102 Sum_probs=443.1
Q ss_pred eeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 341 ACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 341 ~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
...++|.+.|++++|+|+|+ +||+|+.||+|+|||..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 34467999999999999998 69999999999999988765432 235788999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCcee---------
Q 001178 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL--------- 490 (1131)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~--------- 490 (1131)
|++|++++.|++|++||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++|| .+++..
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987654 343 778999999999999 899999999999999 444432
Q ss_pred --EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC------------------CceEEEEEEc
Q 001178 491 --FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------------------GLWCTTMLYS 550 (1131)
Q Consensus 491 --~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------------------~~~v~~~~~s 550 (1131)
..+.+|.++|.+++|+|. ++..+++|+.||.| +||+++......+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 234679999999999874 34689999999999 9999998877776654 3579999999
Q ss_pred cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEe-----cc------------cCCceEEEEEeC----CC-CEEEEEEc
Q 001178 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI-----GF------------RKKSAGVVQFDT----TR-NRILAAGE 608 (1131)
Q Consensus 551 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~------------~~~~v~~~~~s~----~~-~~l~~~~~ 608 (1131)
|+|++|++++. |+.|++||+++++.+.... .| +...|.+++|++ ++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999987 9999999999988765421 12 123689999964 43 45667766
Q ss_pred C-----CcEEEEEcC------------------CCeEEEEEeccCCCCCcceEEEcC----------CCCEEEEEECCCc
Q 001178 609 D-----NQIKFWDMD------------------NVNMLTSTEAEGGLPSLPRLRFNK----------EGNLLVVTTADQG 655 (1131)
Q Consensus 609 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~i~~v~~sp----------~~~~l~~~~~dg~ 655 (1131)
| +.+.+|++. +.+....+... +...+..+.+.+ +...+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899852 22233333321 223677777655 3447888999999
Q ss_pred EEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceecc
Q 001178 656 IKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLE 735 (1131)
Q Consensus 656 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 735 (1131)
|++|++.++.........+.
T Consensus 376 l~~~~~~~g~~~~~~~~~~~------------------------------------------------------------ 395 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQ------------------------------------------------------------ 395 (902)
T ss_dssp EEEEETTTCCEECCGGGSCG------------------------------------------------------------
T ss_pred EEEEECCCCCcccccccCCC------------------------------------------------------------
Confidence 99999865521111000000
Q ss_pred ccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeecee
Q 001178 736 DISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQH 815 (1131)
Q Consensus 736 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 815 (1131)
. + ..|...|.++++++... ++|+......
T Consensus 396 ---------~--------------l---~~~~~~v~~~~~s~~~~-----------~~w~~~~~~~-------------- 424 (902)
T 2oaj_A 396 ---------N--------------L---SWLRPLATTSMAASVPN-----------KLWLGALSAA-------------- 424 (902)
T ss_dssp ---------G--------------G---TTBTTBEEEEEEEEEEH-----------HHHHHHHHTT--------------
T ss_pred ---------c--------------c---cccCCCeeEEEEEEcCH-----------HHHHHHHhcc--------------
Confidence 0 0 11445677777654322 2343211000
Q ss_pred ecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeE----EE--Ee-----CCCCCeeEEEEe
Q 001178 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVM----TT--FM-----SPPPASTFLAFH 883 (1131)
Q Consensus 816 w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~----~~--~~-----~~~~~i~~l~~s 883 (1131)
..+. ....+|...+.+++|+||+++|++|+ |++|++||+.++... .. +. +|...|.+++|+
T Consensus 425 ---~~~~----~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafs 497 (902)
T 2oaj_A 425 ---QNKD----YLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFA 497 (902)
T ss_dssp ---BCCC----CSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEE
T ss_pred ---cCCC----CcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEec
Confidence 0000 01125777788899999999999999 999999999887431 11 11 788899999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEeecc---------------------------------------------eeEEeeccccc
Q 001178 884 PQDNNIIAIGMEDSTIQIYNVRVD---------------------------------------------EVKTKLKGHQK 918 (1131)
Q Consensus 884 ~~~~~~la~g~~dg~I~iwd~~~~---------------------------------------------~~~~~~~~h~~ 918 (1131)
| ++++||+|+.||+|+||++.++ +++..+.+|.+
T Consensus 498 p-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~ 576 (902)
T 2oaj_A 498 A-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG 576 (902)
T ss_dssp T-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC
T ss_pred C-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC
Confidence 9 9999999999999999999876 24678889999
Q ss_pred CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEc-----CCC---cEEEEEe-CCeEE
Q 001178 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFH-----SDQ---VRLLVNH-ETQLA 989 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-----~d~---~~l~~~~-d~~i~ 989 (1131)
.|++|+||||| +||+|+.|++|++||+.+........+......+...|.+++|+ ||| ++|++++ |+.|+
T Consensus 577 ~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~ 655 (902)
T 2oaj_A 577 KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVI 655 (902)
T ss_dssp SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEE
T ss_pred cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEE
Confidence 99999999999 99999999999999998866433222222221344789999999 886 7888864 99999
Q ss_pred EEeC---CCcccceeeecCC--CCCCCeEEEE-Ec----------------------cCCCEEEEEecCCcEEEEECCCC
Q 001178 990 IYDG---SKMECIRQWVPQD--VLSSPISSAA-YS----------------------CNSQLIYATFTDGSIGVFDADSL 1041 (1131)
Q Consensus 990 vwd~---~~~~~~~~~~~~~--~~~~~v~~i~-~s----------------------~dg~~l~s~~~dg~i~vwd~~~~ 1041 (1131)
+||+ .+|+....+.++. .+..+|.+++ |+ +++.+|+++ +..|+||++.++
T Consensus 656 ~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~ 733 (902)
T 2oaj_A 656 TYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKS 733 (902)
T ss_dssp EEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCC
T ss_pred EEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccc
Confidence 9999 7888888887763 2357787777 66 456555554 789999999999
Q ss_pred ceeeEecCCccccCCCCCCCCccccE-EEE------EcCCCCCeEEEEecCCcEEEEecCCCccccccccCCC
Q 001178 1042 RLRCRIAPSAYMSQASPNSSQTVFPL-VVT------SHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVD 1107 (1131)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~v~~~-~v~------~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w~~~~p~~ 1107 (1131)
+...+...+. ..+..+ .+. |++ ++..|++++.||+|++|++.+.+..-.+..|..
T Consensus 734 k~~~k~~~~~----------~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~ 795 (902)
T 2oaj_A 734 KSTHKGFKYP----------LAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQMSEHIPFP 795 (902)
T ss_dssp CEEEEECSSC----------EEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred cceeeEcccc----------eeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHHhhccCCcc
Confidence 8877663321 112211 124 555 567999999999999999998887655555443
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.5e-54 Score=531.41 Aligned_cols=559 Identities=11% Similarity=0.126 Sum_probs=455.7
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCC----CccceeeeeecCcCC-eeEEEEec--CCCceEEEEEcCCC
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS----NDLCQSLEIDAHVGG-VNDLAFSY--PNKQLCIVTCGDDK 478 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~----~~~~~~~~~~~h~~~-V~~l~~s~--d~~~~~l~s~s~d~ 478 (1131)
..|.+.|.+++|+|||++||+++ ++.|++||+.++ +.. ..+.+|... |++++|+| +++ +|++++.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~---~~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPV---VQFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSE---EEECTTTTSCEEEEEECSSTTCC--EEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccc---eEEecCCCceEEEEEECcCCCCC--EEEEecCCC
Confidence 47889999999999999999998 789999999987 433 468899999 99999999 999 899999999
Q ss_pred cEEEEe-CCC--------ceeEEecCCccCeEEEeecccCCccEEEEEecC----CeEEEEeCCCCceeEEecCCCceEE
Q 001178 479 LIRVWD-LSG--------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGSRVDYDAPGLWCT 545 (1131)
Q Consensus 479 ~i~iwd-~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1131)
.|++|| .++ +.+..+..|...|.+++|++ +++++++++.+ +.|++|| .......+..|...|.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 999999 444 67778889999999999965 56899999887 6888887 5567778888999999
Q ss_pred EEEEccCCC-EEEEEeecCCCCceEEEEeCCCCeeeEEEecccCC--ceEEEEEeCC-CCEEEEEEcCCcEEEEEcCCCe
Q 001178 546 TMLYSADGS-RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK--SAGVVQFDTT-RNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 546 ~~~~s~~g~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
+++|+|+++ .+++++. ++.|++||..+++.+..+.+|... .+.+++|+|+ ++++++++.||.|++||+.+++
T Consensus 165 ~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999999998 7888875 899999999999999999875431 6999999999 9999999999999999999999
Q ss_pred EEEEEecc--CCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccc
Q 001178 622 MLTSTEAE--GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPV 699 (1131)
Q Consensus 622 ~~~~~~~~--~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 699 (1131)
.+..+... .+...|.+++|+ ++.++++++.|+.|++||+.++ +....+..+..... ....
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~---------~~~~------- 302 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KCVQKWTLDKQQLG---------NQQV------- 302 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEEEEEECCTTCGG---------GCEE-------
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEEEEEcCCCCccc---------Ccee-------
Confidence 88887221 334489999999 9999999999999999999876 33332222210000 0000
Q ss_pred ccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCC
Q 001178 700 LSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779 (1131)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 779 (1131)
....+++..+++++.++.+++|++.... ....+ ..|...|.+++| |+
T Consensus 303 -----------------------~~~~~~~~~l~~~~~~g~i~~~d~~~~~-----~~~~~---~~~~~~v~~~~~-~~- 349 (615)
T 1pgu_A 303 -----------------------GVVATGNGRIISLSLDGTLNFYELGHDE-----VLKTI---SGHNKGITALTV-NP- 349 (615)
T ss_dssp -----------------------EEEEEETTEEEEEETTSCEEEEETTEEE-----EEEEE---CCCSSCEEEEET-TT-
T ss_pred -----------------------EEEeCCCCeEEEEECCCCEEEEECCCCc-----EEEEE---eCCCCCEEEEEe-cC-
Confidence 0001146788999999999999987521 11222 348899999999 88
Q ss_pred ceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEE
Q 001178 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSL 858 (1131)
Q Consensus 780 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~v 858 (1131)
+++++.||.+++|++.. + . ..|...|.+++| +++..+++++ |+.|++
T Consensus 350 --l~~~~~dg~i~~w~~~~------------------------~-~----~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 350 --LISGSYDGRIMEWSSSS------------------------M-H----QDHSNLIVSLDN-SKAQEYSSISWDDTLKV 397 (615)
T ss_dssp --TEEEETTSCEEETTTTE------------------------E-E----CCCCSCEEEEEC-CSTTCCEEEETTTEEEE
T ss_pred --cEEECCCCeEEEEEchh------------------------h-c----CcccCceEEEEE-CCCcEEEEEeCCCCEEE
Confidence 99999999999997540 0 0 258899999999 5566777776 899999
Q ss_pred EECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeC-
Q 001178 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS- 937 (1131)
Q Consensus 859 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~- 937 (1131)
||+.+++... .+.+++|+| ++.+++++ .++.+.+|+..+++.+..+. |...+++++|+ +++|++++.
T Consensus 398 ~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~ 465 (615)
T 1pgu_A 398 NGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEE 465 (615)
T ss_dssp TTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETT
T ss_pred EEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecC
Confidence 9987765433 688999999 88888877 88999999999998888877 88999999999 889999999
Q ss_pred CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCcccceeeec-CCCCCCCeEEE
Q 001178 938 DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVP-QDVLSSPISSA 1015 (1131)
Q Consensus 938 Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~~~~~~~~~-~~~~~~~v~~i 1015 (1131)
|+.|++||+.+++... ... ..+...+.+++|+|++++|+++ .|+.|++||+.+++.+..+.. | ...|+++
T Consensus 466 d~~i~~~~~~~~~~~~----~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h---~~~v~~~ 537 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSF----DLK-TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR---TSKINAI 537 (615)
T ss_dssp TSCEEEEETTEEEEEE----ECS-SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC---SSCEEEE
T ss_pred CCeEEEEECCCccccc----ccc-CCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCC---CCceeEE
Confidence 9999999999854321 112 2234789999999999999987 489999999999999888765 4 8899999
Q ss_pred EEcc----------CCCEEEEEecCCcEEEEECCCC-ceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEec
Q 001178 1016 AYSC----------NSQLIYATFTDGSIGVFDADSL-RLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLT 1084 (1131)
Q Consensus 1016 ~~s~----------dg~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~ 1084 (1131)
+|+| ++++|++++.||.|++||+.++ +.+..+.. |...|. +++|+| ++. |++++.
T Consensus 538 ~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----------h~~~v~--~l~~s~-~~~-l~s~~~ 603 (615)
T 1pgu_A 538 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA----------HKDGVN--NLLWET-PST-LVSSGA 603 (615)
T ss_dssp EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS----------STTCEE--EEEEEE-TTE-EEEEET
T ss_pred EEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhc----------CccceE--EEEEcC-CCC-eEEecC
Confidence 9999 9999999999999999999988 56555543 233344 688999 456 999999
Q ss_pred CCcEEEEecCC
Q 001178 1085 DGSVKVIEPSE 1095 (1131)
Q Consensus 1085 Dg~v~iW~~~~ 1095 (1131)
||+|++|++..
T Consensus 604 d~~v~iw~~~~ 614 (615)
T 1pgu_A 604 DACIKRWNVVL 614 (615)
T ss_dssp TSCEEEEEEC-
T ss_pred CceEEEEeeec
Confidence 99999999875
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-52 Score=522.67 Aligned_cols=587 Identities=10% Similarity=0.053 Sum_probs=422.4
Q ss_pred CccccccCCCCCcc----------cccCCCcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCccccc
Q 001178 316 SVDEATYPVPSQQA----------TWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVS 385 (1131)
Q Consensus 316 ~~~~~~~s~~~~~~----------~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~ 385 (1131)
.|..++|+|+++.. +|... ..+....+.|...|++++|+| |+ +|++|+.|++|+|||+.+++.+..
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~--~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~ 94 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQ--QVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTT 94 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECST--TCEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCC--CcEEEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEE
Confidence 57778888888633 33322 234455567899999999999 87 699999999999999999876642
Q ss_pred ccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCcccee--------eeeecCcCCe
Q 001178 386 KPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQS--------LEIDAHVGGV 457 (1131)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~--------~~~~~h~~~V 457 (1131)
+. |.+.|++++|+|++++|++|+.||+|++||+.+++..... ..+.+|.++|
T Consensus 95 -------------------~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V 154 (902)
T 2oaj_A 95 -------------------VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI 154 (902)
T ss_dssp -------------------EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC
T ss_pred -------------------Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCe
Confidence 22 5678999999999999999999999999999987642100 2347899999
Q ss_pred eEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCC------------------ccCeEEEeecccCCccEEEEEe
Q 001178 458 NDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH------------------EAPVYSVCPHQKENIHFIFSTA 518 (1131)
Q Consensus 458 ~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h------------------~~~v~~~~~~~~~~~~~l~s~s 518 (1131)
++++|+|++.. .+++|+.|+.| +|| .+++.+..+..| ...|.+++|+| ++.+|++++
T Consensus 155 ~sl~~sp~~~~-~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~lasgs 230 (902)
T 2oaj_A 155 VSIQWNPRDIG-TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP--NSLHIITIH 230 (902)
T ss_dssp CEEEEETTEEE-EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT--TSSEEEEEE
T ss_pred EEEEEccCCCC-EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC--CCCEEEEEE
Confidence 99999997543 78999999999 999 777778777665 57799999965 568999999
Q ss_pred cCCeEEEEeCCCCceeEEec-----C-------------CCceEEEEEEc----cCC-CEEEEEeecCC-CCceEEEEeC
Q 001178 519 VDGKIKAWLYDNVGSRVDYD-----A-------------PGLWCTTMLYS----ADG-SRLFSCGTSKE-GDSHLVEWNE 574 (1131)
Q Consensus 519 ~dg~i~~wd~~~~~~~~~~~-----~-------------~~~~v~~~~~s----~~g-~~l~~~~~~~~-~~~~i~iwd~ 574 (1131)
.||.|++||+++++...... . +...|.+++|+ |++ ..+++++.+.+ ....+.+|+.
T Consensus 231 ~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 231 EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 99999999998876654311 1 23479999996 444 45556543211 1247888884
Q ss_pred C------------------CCeeeEEEecccCCceEEEEEeC----------CCCEEEEEEcCCcEEEEEcCCCeEEEEE
Q 001178 575 S------------------EGALKRTYIGFRKKSAGVVQFDT----------TRNRILAAGEDNQIKFWDMDNVNMLTST 626 (1131)
Q Consensus 575 ~------------------~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1131)
. +++..+.+.......+..+.+.+ +...+++++.||.|++|++.++......
T Consensus 311 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~ 390 (902)
T 2oaj_A 311 GYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA 390 (902)
T ss_dssp EECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCG
T ss_pred CCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccc
Confidence 2 22334444322334677777655 3347899999999999999877543221
Q ss_pred -----eccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccc
Q 001178 627 -----EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLS 701 (1131)
Q Consensus 627 -----~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 701 (1131)
....+...|++++|++.. ..+|+.... .+.
T Consensus 391 ~~~~~~l~~~~~~v~~~~~s~~~-----------~~~w~~~~~--------~~~-------------------------- 425 (902)
T 2oaj_A 391 SLFPQNLSWLRPLATTSMAASVP-----------NKLWLGALS--------AAQ-------------------------- 425 (902)
T ss_dssp GGSCGGGTTBTTBEEEEEEEEEE-----------HHHHHHHHH--------TTB--------------------------
T ss_pred ccCCCcccccCCCeeEEEEEEcC-----------HHHHHHHHh--------ccc--------------------------
Confidence 111222345555554311 122321100 000
Q ss_pred ccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCce
Q 001178 702 KAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIG 781 (1131)
Q Consensus 702 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 781 (1131)
...|.+ .+|...+..++|+|++..
T Consensus 426 ---------------------------------------~~~~~l-----------------~G~~~~v~sv~~spdg~~ 449 (902)
T 2oaj_A 426 ---------------------------------------NKDYLL-----------------KGGVRTKRQKLPAEYGTA 449 (902)
T ss_dssp ---------------------------------------CCCCSC-----------------CCSBCCCCCCCCCSEEEE
T ss_pred ---------------------------------------CCCCcc-----------------cCCcCCCCcccccccCcE
Confidence 000000 225666778899999999
Q ss_pred EEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEE
Q 001178 782 ILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFN 860 (1131)
Q Consensus 782 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd 860 (1131)
+++++.|++|++||+..+..... . .+... +...+..+|...|.+++|+|||++||+|+ ||+|+|||
T Consensus 450 laSgs~DgtVrlWd~~~g~~~~~-~--------~~~~~----l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd 516 (902)
T 2oaj_A 450 FITGHSNGSVRIYDASHGDIQDN-A--------SFEVN----LSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFK 516 (902)
T ss_dssp EEEEETTSEEEEEESSCCTTTTT-B--------CEEEE----HHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEECCCccccCC-c--------eEEee----chhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEE
Confidence 99999999999999876532100 0 00000 00001125888999999999999999999 89999999
Q ss_pred CCCc---------------------------------------------eeEEEEeCCCCCeeEEEEeCCCCcEEEEEeC
Q 001178 861 MMNF---------------------------------------------KVMTTFMSPPPASTFLAFHPQDNNIIAIGME 895 (1131)
Q Consensus 861 ~~~~---------------------------------------------~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~ 895 (1131)
+.++ +++..+.+|.+.|++++||| +| +||+|+.
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~ 594 (902)
T 2oaj_A 517 YEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYA 594 (902)
T ss_dssp EEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEET
T ss_pred ecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeC
Confidence 9876 34677889999999999999 88 9999999
Q ss_pred CCcEEEEEeecceeEE-----eec-ccccCeeEEEEc-----cCC---CEEEEEeCCCcEEEEEc---CCCceeeeeeee
Q 001178 896 DSTIQIYNVRVDEVKT-----KLK-GHQKHITGLAFS-----TNL---NILVSSGSDAQLIFWNT---DTWEKRKSIAIQ 958 (1131)
Q Consensus 896 dg~I~iwd~~~~~~~~-----~~~-~h~~~V~~l~~s-----~dg---~~l~s~~~Dg~v~lwd~---~~~~~~~~~~~~ 958 (1131)
|++|+|||++++..+. .+. +|.+.|++|+|+ ||| .+|++++.|++|++||+ .+++......-.
T Consensus 595 D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~ 674 (902)
T 2oaj_A 595 AGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDI 674 (902)
T ss_dssp TSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEE
T ss_pred CCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCc
Confidence 9999999998877654 233 899999999999 885 89999999999999999 666644332222
Q ss_pred cCCCCCCCCceEEE-Ec----------------------CCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEE
Q 001178 959 LPAGKLPVGETRVQ-FH----------------------SDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSA 1015 (1131)
Q Consensus 959 ~~~~~~~~~v~~v~-~s----------------------~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i 1015 (1131)
.. ..+...+..++ |+ +++..|++ ++..++||++.++++.+....+ ...+.++
T Consensus 675 ~~-~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~-~~~~ir~~~~~~~k~~~k~~~~---~~~~~~v 749 (902)
T 2oaj_A 675 TN-VTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT-GFDDIRLITLGKSKSTHKGFKY---PLAATGL 749 (902)
T ss_dssp EE-CCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE-CSSEEEEECTTCCCEEEEECSS---CEEEEEE
T ss_pred ee-cCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE-eccceEEEeCccccceeeEccc---ceeeeEE
Confidence 11 11124566665 55 45555544 4889999999999998877555 3455555
Q ss_pred ---E------EccCCCEEEEEecCCcEEEEECCCCceeeEecCCc
Q 001178 1016 ---A------YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 1016 ---~------~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
. |+++|..|++++.||.|++|++.+++.+..+....
T Consensus 750 ~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~ 794 (902)
T 2oaj_A 750 SYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPF 794 (902)
T ss_dssp EEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCc
Confidence 6 78999999999999999999999999988887543
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.8e-46 Score=471.03 Aligned_cols=553 Identities=13% Similarity=0.161 Sum_probs=416.5
Q ss_pred eeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 341 ACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 341 ~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
.+.+ +|.+.|++++|||+|+ +||+|+.||.|+|||+.+++.+. .+.+|...|.+++|+|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~-------------------~~~~~~~~v~~~~~s~ 65 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVR-------------------SIQVTETPVRAGKFIA 65 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEG
T ss_pred ceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEE-------------------EEecCCCcEEEEEEeC
Confidence 3344 4999999999999998 58999999999999999987664 4668999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC-ceeEEecCCc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-RKLFQFEGHE 497 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~~~~~~h~ 497 (1131)
++++||+|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|+.|++|| .++ .....+.+|.
T Consensus 66 ~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 140 (814)
T 3mkq_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 (814)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCC
Confidence 99999999999999999999987544 6788999999999999999 799999999999999 554 6677888999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC-ceEEEEEEcc--CCCEEEEEeecCCCCceEEEEeC
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG-LWCTTMLYSA--DGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
..|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||.
T Consensus 141 ~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~ 215 (814)
T 3mkq_A 141 HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDY 215 (814)
T ss_dssp SCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEET
T ss_pred CcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEEC
Confidence 99999999762 45799999999999999998888777766654 7899999999 9999999986 899999999
Q ss_pred CCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCC--EEEEEEC
Q 001178 575 SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN--LLVVTTA 652 (1131)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~--~l~~~~~ 652 (1131)
.+++.+..+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++. +++++ .
T Consensus 216 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~-~ 291 (814)
T 3mkq_A 216 QTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASG-F 291 (814)
T ss_dssp TTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEE-E
T ss_pred CCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEE-e
Confidence 99999999988765 899999999999999999999999999999999888876654 799999999987 45544 5
Q ss_pred CCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCce
Q 001178 653 DQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPR 732 (1131)
Q Consensus 653 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 732 (1131)
++.+.+|++..+... ..++|+ +..+
T Consensus 292 ~~~~~~~~~~~~~~~--------------------------~~~~~~-----------------------------g~~~ 316 (814)
T 3mkq_A 292 DNGFTVLSLGNDEPT--------------------------LSLDPV-----------------------------GKLV 316 (814)
T ss_dssp TTEEEEEECSCCSCC--------------------------EEECSS-----------------------------SEEE
T ss_pred CCCEEEEEcCCCCce--------------------------eEECCC-----------------------------CCEE
Confidence 667888987654211 023333 1112
Q ss_pred eccccCCCCc---------ceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCC
Q 001178 733 NLEDISDKTK---------PWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNP 803 (1131)
Q Consensus 733 ~~~~~d~~v~---------~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 803 (1131)
++++.+.... .|++..... ........ ..+...+.+++|+|+|+.+++++ ++.+.+|++....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~--- 388 (814)
T 3mkq_A 317 WSGGKNAAASDIFTAVIRGNEEVEQDEP-LSLQTKEL---GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR--- 388 (814)
T ss_dssp EECCTTSCTTCEEEEECCSCCCCCSSSC-BCCCCEEE---CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE---
T ss_pred EECcccccceeeeeeecccccccccCcc-ceeeeecC---CCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc---
Confidence 2221111100 111111100 00001111 22566789999999999998887 8999999853210
Q ss_pred CCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEE
Q 001178 804 SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAF 882 (1131)
Q Consensus 804 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 882 (1131)
..+...+.+++|+|||+++++++ +|+|++|+. +.+|...+.+++|
T Consensus 389 --------------------------~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~ 434 (814)
T 3mkq_A 389 --------------------------NKAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHS 434 (814)
T ss_dssp --------------------------EEEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSS
T ss_pred --------------------------ccCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCc
Confidence 01345678999999999999998 799999963 3457778899999
Q ss_pred eCCCC---cEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEE------eCCCcEEEEEcCC-----
Q 001178 883 HPQDN---NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS------GSDAQLIFWNTDT----- 948 (1131)
Q Consensus 883 s~~~~---~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~------~~Dg~v~lwd~~~----- 948 (1131)
+| ++ .+|++++.|+.|++||+.+++.+..+..|.. .++|+|||++|+++ +.++.+.+|--..
T Consensus 435 s~-dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (814)
T 3mkq_A 435 AI-DRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEA 510 (814)
T ss_dssp CC-CEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHH
T ss_pred Cc-cceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhh
Confidence 99 76 5788899999999999999999999988875 99999999999999 6666555654210
Q ss_pred ----------CceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCCCCCCCeEEEEE
Q 001178 949 ----------WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAY 1017 (1131)
Q Consensus 949 ----------~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 1017 (1131)
+........... ...+.+..|. +..++... .+.+..+-. +. ...+... ..++..+.|
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~----~~~i~s~~w~--~~~~i~~t~~~~~~~~~~--~~-~~~~~~~---~~~~~~~~~ 578 (814)
T 3mkq_A 511 ANNGNIDDSEGVDEAFDVLYEL----SESITSGKWV--GDVFIFTTATNRLNYFVG--GK-TYNLAHY---TKEMYLLGY 578 (814)
T ss_dssp HHHTCCBTTTBCTTTEEEEEEE----CSCCSEEEEE--TTEEEEECTTSEEEEEET--TE-EEEEEEC---SSCCEEEEE
T ss_pred hhccCCccccchhhheeeeeEe----ccEEEeeEEe--CCEEEEEcCCCeEEEEeC--Ce-eEEEEEC---CccEEEEEE
Confidence 000000000000 1334555664 33333332 344444321 11 1122222 456777888
Q ss_pred ccCCCEEEEEecCCcEEEEECCC
Q 001178 1018 SCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 1018 s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
.++++.++....++.+.+|++..
T Consensus 579 ~~~~~~l~~~d~~~~~~~~~l~~ 601 (814)
T 3mkq_A 579 LARDNKVYLADREVHVYGYEISL 601 (814)
T ss_dssp EGGGTEEEEECTTCCEEEEECCH
T ss_pred EecCCEEEEEcCCCCEEEEEECc
Confidence 89999999999999999999763
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.6e-44 Score=453.64 Aligned_cols=477 Identities=15% Similarity=0.212 Sum_probs=368.5
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|.+.|.+++|+|||++||+|+.||.|+|||+.+++.+. .+.+|.++|++++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999876544 6789999999999999999 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC-ceeEEecCCCceEEEEEEcc-CCCEEEEEe
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSA-DGSRLFSCG 560 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~ 560 (1131)
| .+++.+..+.+|.+.|.+++|++ ++.+|++++.||.|++||+++. .....+..|...|.+++|+| ++..+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 9 88999999999999999999965 5579999999999999999887 55567788889999999999 888999998
Q ss_pred ecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC--CCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT--TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
. ++.|++||+.++.....+..++...+.+++|+| ++.++++++.||.|++||+.+++.+..+..+.. .|.++
T Consensus 161 ~----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~ 234 (814)
T 3mkq_A 161 L----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFA 234 (814)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEEE
T ss_pred C----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEE
Confidence 6 899999999999888888887766899999999 899999999999999999999999888876654 79999
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccc
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l 718 (1131)
+|+|+++++++++.||.|++||..++ .....+..+... +...+++|+
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~-------------v~~~~~~~~------------------- 281 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNVGLER-------------SWCIATHPT------------------- 281 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTC-SEEEEECCSSSS-------------EEEEEECTT-------------------
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeecCCCc-------------EEEEEEccC-------------------
Confidence 99999999999999999999998776 222222211111 111123333
Q ss_pred cCCCccccCCCCc-eeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceee-EEee
Q 001178 719 NGADSAARGIEKP-RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQK-LWKW 796 (1131)
Q Consensus 719 ~~~~~~~~~~~~~-~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~-iw~~ 796 (1131)
+.. +++.+.++.+.+|++.. ....+.++|+|..+++++.+.... ++..
T Consensus 282 ----------~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 331 (814)
T 3mkq_A 282 ----------GRKNYIASGFDNGFTVLSLGN--------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTA 331 (814)
T ss_dssp ----------CGGGEEEEEETTEEEEEECSC--------------------CSCCEEECSSSEEEEECCTTSCTTCEEEE
T ss_pred ----------CCceEEEEEeCCCEEEEEcCC--------------------CCceeEECCCCCEEEECcccccceeeeee
Confidence 221 23333344455554322 112345555665555544332110 0000
Q ss_pred cCCCCCCCCccceeeeceeecCCCCcccccCC--CCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCC
Q 001178 797 NRTEQNPSGKATAAVAPQHWQPSNGLLMTNDV--PENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPP 874 (1131)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~ 874 (1131)
.....|+...+....... ...+...+.+++|+|+|+++++++++.+.+|++....... .
T Consensus 332 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~ 392 (814)
T 3mkq_A 332 --------------VIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----F 392 (814)
T ss_dssp --------------ECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----E
T ss_pred --------------ecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----C
Confidence 000123333333221111 1245667899999999999999999999999987654433 3
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCC---CEEEEEeCCCcEEEEEcCCCce
Q 001178 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL---NILVSSGSDAQLIFWNTDTWEK 951 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg---~~l~s~~~Dg~v~lwd~~~~~~ 951 (1131)
+.+.+++|+| +++++|+++.+|.|++|+ .+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++.
T Consensus 393 ~~i~~~~~sp-dg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~ 463 (814)
T 3mkq_A 393 GKCQDFVWGP-DSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTL 463 (814)
T ss_dssp EECSEEEECT-TSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCE
T ss_pred CceEEEEEeC-CCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcE
Confidence 4588999999 899999999999999995 456788899999999998 6899999999999999998765
Q ss_pred eeeeeeecCCCCCCCCceEEEEcCCCcEEEEE------eCCeEEEEeC
Q 001178 952 RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN------HETQLAIYDG 993 (1131)
Q Consensus 952 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~------~d~~i~vwd~ 993 (1131)
..... . ....++|+|||++|+++ .+..+.++..
T Consensus 464 ~~~~~-----~----~~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 464 VRRID-----V----NAKDVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp EEEES-----S----CEEEEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred EEEEe-----c----CCCEEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 43322 1 12389999999999998 6666666643
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.9e-44 Score=412.22 Aligned_cols=283 Identities=22% Similarity=0.387 Sum_probs=261.5
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+|.++|++++|+|+++ +|++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+|++|
T Consensus 106 gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~~l 165 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGKLL 165 (410)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSSEE
T ss_pred ccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCCEE
Confidence 5899999999999998 69999999999999999987664 477999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
++|+.|++|++||+.+++++. .+.+|...|.+++|+|+++ +|++|+.|++|++|| .++.++..+.+|...|.++
T Consensus 166 ~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp EEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence 999999999999998876544 6789999999999999999 899999999999999 8899999999999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccC--------------------CCEEEEEeecC
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD--------------------GSRLFSCGTSK 563 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------g~~l~~~~~~~ 563 (1131)
+++ +++.++++++.|+.|++||+.+......+..|...|.+++|+|+ |.+|++++.
T Consensus 241 ~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~-- 316 (410)
T 1vyh_C 241 RPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR-- 316 (410)
T ss_dssp EEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET--
T ss_pred EEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC--
Confidence 985 46689999999999999999999988899999999999999996 678999986
Q ss_pred CCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
|+.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..|.. .|.+++|+|+
T Consensus 317 --D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~ 391 (410)
T 1vyh_C 317 --DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKT 391 (410)
T ss_dssp --TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSS
T ss_pred --CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCC
Confidence 89999999999999999998766 899999999999999999999999999999999888876654 7999999999
Q ss_pred CCEEEEEECCCcEEEEec
Q 001178 644 GNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~ 661 (1131)
+.+|++|+.||.|++|++
T Consensus 392 ~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEETTSEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 999999999999999985
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.9e-38 Score=353.78 Aligned_cols=290 Identities=19% Similarity=0.274 Sum_probs=259.1
Q ss_pred eeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 340 ~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
..+++ +|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+. .+..|...|.+++|+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~~~~s 106 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAYA 106 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEE-------------------EEECSSSCEEEEEEC
T ss_pred hheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcce-------------------EeecCCccEEEEEEC
Confidence 34445 5999999999999998 69999999999999999887654 356899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCc-cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCC
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQGSND-LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h 496 (1131)
|+|++||+|+.|+.|++||+.++.. ......+.+|.+.|.++.|++++. +++++.|++|++|| .+++.+..+.+|
T Consensus 107 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h 183 (340)
T 1got_B 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGH 183 (340)
T ss_dssp TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCC
Confidence 9999999999999999999987642 233456789999999999999875 88999999999999 888999999999
Q ss_pred ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
.+.|.+++|++ ++.++++|+.|+.|++||+++......+..|...|.+++|+|++++|++++. |+.|++||+++
T Consensus 184 ~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~~ 257 (340)
T 1got_B 184 TGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRA 257 (340)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTT
T ss_pred CCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECCC
Confidence 99999999975 5579999999999999999999988899999999999999999999999986 89999999999
Q ss_pred CeeeEEEeccc-CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCc
Q 001178 577 GALKRTYIGFR-KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1131)
Q Consensus 577 ~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~ 655 (1131)
++.+..+.... ...+.+++|+|+++++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|++.+|++|+.|+.
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSC
T ss_pred CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCCcc
Confidence 98887775322 23689999999999999999999999999999998888876654 8999999999999999999999
Q ss_pred EEEEe
Q 001178 656 IKILA 660 (1131)
Q Consensus 656 i~iw~ 660 (1131)
|++||
T Consensus 336 i~iWd 340 (340)
T 1got_B 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.5e-38 Score=355.83 Aligned_cols=293 Identities=19% Similarity=0.255 Sum_probs=261.4
Q ss_pred eeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 340 ~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
..+++ +|.+.|++++|+|+++ +||+|+.||+|+|||..+++... .+..|...|.+++|+
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~-------------------~~~~~~~~v~~~~~s 115 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEH-------------------AVTMPCTWVMACAYA 115 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEE-------------------EEECSSSCCCEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcce-------------------EEecCCCCEEEEEEC
Confidence 44455 5999999999999998 59999999999999998877654 355788899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCc---cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEec
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQGSND---LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE 494 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~---~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~ 494 (1131)
|+|.+||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++|| .+++.+..+.
T Consensus 116 p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~ 193 (354)
T 2pbi_B 116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFH 193 (354)
T ss_dssp TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence 9999999999999999999865421 223346778999999999999999 799999999999999 8899999999
Q ss_pred CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC
Q 001178 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
+|...|.++++++.+++.+|++|+.||.|++||++++.....+..|...|.+++|+|++.+|++++. |+.|++||+
T Consensus 194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~ 269 (354)
T 2pbi_B 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYDL 269 (354)
T ss_dssp CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 9999999999998888899999999999999999999988899999999999999999999999986 899999999
Q ss_pred CCCeeeEEEeccc-CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC
Q 001178 575 SEGALKRTYIGFR-KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 575 ~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
+.++.+..+..+. ...+.+++|+|++.++++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+|++|++|+.|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEETT
T ss_pred CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcCC
Confidence 9988877776432 23678999999999999999999999999999998888775544 89999999999999999999
Q ss_pred CcEEEEe
Q 001178 654 QGIKILA 660 (1131)
Q Consensus 654 g~i~iw~ 660 (1131)
+.|++|+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999995
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.7e-38 Score=351.84 Aligned_cols=298 Identities=20% Similarity=0.261 Sum_probs=257.8
Q ss_pred eeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 341 ACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 341 ~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
..++ +|.+.|++++|+|++..+|++|+.|++|++||+.+...... .....+.+|...|.+++|+|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~~s~ 75 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------------VPVRSFKGHSHIVQDCTLTA 75 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------------EEEEEEECCSSCEEEEEECT
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------------ccceEEeCCcccEEEEEECC
Confidence 3445 49999999999998755799999999999999875432211 01125789999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccC
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAP 499 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~ 499 (1131)
||++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||..++++..+.+|...
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~ 150 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIKGQCLATLLGHNDW 150 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETTSCEEEEECCCSSC
T ss_pred CCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEeccCCc
Confidence 99999999999999999999987543 6889999999999999999 899999999999999888999999999999
Q ss_pred eEEEeecccC----CccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 500 VYSVCPHQKE----NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 500 v~~~~~~~~~----~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
|.++++.+.. ++..+++++.|+.|++||++.......+..|...|.+++|+|+|++|++++. |+.|++||+.
T Consensus 151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~ 226 (319)
T 3frx_A 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLA 226 (319)
T ss_dssp EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECC
Confidence 9999997743 4568999999999999999998888889999999999999999999999986 9999999999
Q ss_pred CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC------CCCCcceEEEcCCCCEEEE
Q 001178 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG------GLPSLPRLRFNKEGNLLVV 649 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~i~~v~~sp~~~~l~~ 649 (1131)
+++.+..+..+ ..+.+++|+|++.++++++.+ .+++|++..+..+..+..+. +...+.+++|+|+|++|++
T Consensus 227 ~~~~~~~~~~~--~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s 303 (319)
T 3frx_A 227 AKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303 (319)
T ss_dssp TTEEEEEEECC--SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEE
T ss_pred CCcEEEEecCC--CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEE
Confidence 99999888753 379999999999998888765 59999999887777664321 2336789999999999999
Q ss_pred EECCCcEEEEecCCC
Q 001178 650 TTADQGIKILANADG 664 (1131)
Q Consensus 650 ~~~dg~i~iw~~~~~ 664 (1131)
|+.||.|++|++.++
T Consensus 304 g~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 304 GYTDNVIRVWQVMTA 318 (319)
T ss_dssp EETTSCEEEEEEEEC
T ss_pred eecCceEEEEEEeec
Confidence 999999999998654
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=351.67 Aligned_cols=285 Identities=16% Similarity=0.217 Sum_probs=257.6
Q ss_pred cCCCcEEEEEEecC----CCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 345 HQGSSVVSMDFHPF----HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 345 ~h~~~V~~~~fspd----g~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
.|.+.|++++|+|+ ++ +|++|+.|++|+|||+.+++.... ..+.+|...|.+++|+|+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v~~~~~~~~ 91 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGVVSVDISHT 91 (321)
T ss_dssp SSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECSS
T ss_pred cCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCEEEEEECCC
Confidence 59999999999985 44 699999999999999987653221 146799999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccC
Q 001178 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP 499 (1131)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~ 499 (1131)
+.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++|| .+++....+..|...
T Consensus 92 ~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~ 166 (321)
T 3ow8_A 92 LPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166 (321)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSSSC
T ss_pred CCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCCce
Confidence 9999999999999999999987554 5778889999999999999 899999999999999 888888999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee
Q 001178 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 579 (1131)
|.+++|+| ++++|++++.||.|++||+++++....+..|...|.+++|+|++++|++++. ++.|++||+++++.
T Consensus 167 v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iwd~~~~~~ 240 (321)
T 3ow8_A 167 ILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIYDVQHANL 240 (321)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEEETTTCCE
T ss_pred EEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEEECCCcce
Confidence 99999965 6689999999999999999999988899999999999999999999999986 89999999999999
Q ss_pred eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001178 580 KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw 659 (1131)
...+.+|.. .|.+++|+|++.+|++++.|++|++||+.+++++..+..+.. .|.+++|+|++++|++++.||.|++|
T Consensus 241 ~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 241 AGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp EEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 999988766 899999999999999999999999999999999988876544 89999999999999999999999999
Q ss_pred ec
Q 001178 660 AN 661 (1131)
Q Consensus 660 ~~ 661 (1131)
|+
T Consensus 318 d~ 319 (321)
T 3ow8_A 318 DC 319 (321)
T ss_dssp EC
T ss_pred eC
Confidence 96
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.3e-38 Score=344.37 Aligned_cols=289 Identities=17% Similarity=0.280 Sum_probs=250.7
Q ss_pred eeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 341 ACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 341 ~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
.+++ +|.+.|++++|||+|+ +|++|+.||+|+|||+.+++.+. .+.+|...|.+++|+|
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~-------------------~~~~~~~~v~~~~~~~ 65 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVR-------------------SIQVTETPVRAGKFIA 65 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEG
T ss_pred EEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeE-------------------EeeccCCcEEEEEEeC
Confidence 4455 4999999999999998 59999999999999999887654 4668999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC-ceeEEecCCc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-RKLFQFEGHE 497 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~~~~~~h~ 497 (1131)
++++|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++|| .++ .....+.+|.
T Consensus 66 ~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~ 140 (304)
T 2ynn_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 (304)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCC
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccC
Confidence 99999999999999999999987554 6889999999999999999 899999999999999 555 4557788999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec-CCCceEEEEEEcc--CCCEEEEEeecCCCCceEEEEeC
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-APGLWCTTMLYSA--DGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
..|.+++|+|. ++..|++|+.|++|++||++.......+. .+...+..+.|+| ++.+|++++. ++.|++||+
T Consensus 141 ~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~ 215 (304)
T 2ynn_A 141 HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDY 215 (304)
T ss_dssp SCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEET
T ss_pred CcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeC
Confidence 99999999763 45799999999999999998877666554 4556788999986 7789999986 999999999
Q ss_pred CCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCC--EEEEEEC
Q 001178 575 SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN--LLVVTTA 652 (1131)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~--~l~~~~~ 652 (1131)
++++++..+.+|.. .+.+++|+|++++|++++.||+|++||+.+++.+..+..+.. .+.+++|+|++. ++++|+.
T Consensus 216 ~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~asg~~ 292 (304)
T 2ynn_A 216 QTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGFD 292 (304)
T ss_dssp TTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEEEEET
T ss_pred CCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEEEecC
Confidence 99999999999776 899999999999999999999999999999999988876543 789999999875 5777766
Q ss_pred CCcEEEEecCC
Q 001178 653 DQGIKILANAD 663 (1131)
Q Consensus 653 dg~i~iw~~~~ 663 (1131)
|| +.+|++.+
T Consensus 293 ~g-~~~~~~~~ 302 (304)
T 2ynn_A 293 NG-FTVLSLGN 302 (304)
T ss_dssp TE-EEEEECC-
T ss_pred Cc-eEEEEecc
Confidence 54 66777654
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-38 Score=361.06 Aligned_cols=301 Identities=18% Similarity=0.268 Sum_probs=260.0
Q ss_pred cceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 338 RAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 338 ~~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
..+.+++ +|.+.|++++|+|+|++ |++|+.||+|+|||+.+++... .+.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~-------------------~~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTH-------------------AIKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEE-------------------EEECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccce-------------------EEecCCCCEEEEE
Confidence 3455555 59999999999999984 9999999999999999887654 4678999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCCc----cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeE
Q 001178 417 WSPDGNFIGVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF 491 (1131)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~ 491 (1131)
|+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++|| .+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999975321 1223357899999999999998654 699999999999999 7888887
Q ss_pred Ee-----cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCC-CceeEEecCCCceEEEEEEccCCCEEEEEeecCCC
Q 001178 492 QF-----EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 492 ~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
.+ .+|...|.++++++ .++.++++|+.|+.|++||++. ......+.+|...|.+++|+|++++|++++.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---- 269 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD---- 269 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred EeecccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence 76 68999999999975 3558999999999999999984 4566778889999999999999999999987
Q ss_pred CceEEEEeCCCCeeeEEEecccC------CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec--cCCCCCcce
Q 001178 566 DSHLVEWNESEGALKRTYIGFRK------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA--EGGLPSLPR 637 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~ 637 (1131)
|+.|++||+++++.+..+..+.. ..+.+++|+|+++++++|+.||.|++||...++.+..+.. .+|...|.+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 99999999999999888865432 1378999999999999999999999999999988877632 345558999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 638 LRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 638 v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++|+|+|.+|++|+.|+.|++|++...
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999998765
No 20
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=342.20 Aligned_cols=294 Identities=16% Similarity=0.270 Sum_probs=258.7
Q ss_pred CceeEEecCCccCeEEEeeccc--CCccEEEEEecCCeEEEEeCCCCcee--EEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 487 GRKLFQFEGHEAPVYSVCPHQK--ENIHFIFSTAVDGKIKAWLYDNVGSR--VDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~--~~~~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
+.....+.+|.+.|.+++|++. .++.+|++|+.|++|++|+++..... ..+.+|...|.++.|++++.++++++.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~- 100 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL- 100 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET-
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC-
Confidence 3345667799999999999874 35679999999999999999876543 367889999999999999999999987
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
|+.|++||+.+++.+..+..+.. .+.+++|+|++++|++++.||.|++|++.+++....+..+.. .+.+++|+|
T Consensus 101 ---D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--~v~~~~~sp 174 (321)
T 3ow8_A 101 ---DAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--FILSIAYSP 174 (321)
T ss_dssp ---TSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS--CEEEEEECT
T ss_pred ---CCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--eEEEEEECC
Confidence 99999999999999999887655 788899999999999999999999999999998888776554 799999999
Q ss_pred CCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCC
Q 001178 643 EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGAD 722 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~ 722 (1131)
++++|++++.||.|++||+.++. ..
T Consensus 175 dg~~lasg~~dg~i~iwd~~~~~-~~------------------------------------------------------ 199 (321)
T 3ow8_A 175 DGKYLASGAIDGIINIFDIATGK-LL------------------------------------------------------ 199 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTE-EE------------------------------------------------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCc-EE------------------------------------------------------
Confidence 99999999999999999986541 00
Q ss_pred ccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCC
Q 001178 723 SAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQN 802 (1131)
Q Consensus 723 ~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 802 (1131)
..
T Consensus 200 ---------------------------------------------------------------------~~--------- 201 (321)
T 3ow8_A 200 ---------------------------------------------------------------------HT--------- 201 (321)
T ss_dssp ---------------------------------------------------------------------EE---------
T ss_pred ---------------------------------------------------------------------EE---------
Confidence 00
Q ss_pred CCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEE
Q 001178 803 PSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLA 881 (1131)
Q Consensus 803 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 881 (1131)
+ .+|...|.+++|+|++++|++++ |++|++||+.+++....+.+|...|.+++
T Consensus 202 -------------------------~-~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (321)
T 3ow8_A 202 -------------------------L-EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255 (321)
T ss_dssp -------------------------E-CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred -------------------------E-cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence 0 03677888999999999999998 89999999999999999999999999999
Q ss_pred EeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001178 882 FHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 882 ~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
|+| ++.+|++|+.|++|++||+.+++++..+.+|.+.|.+++|+|++++|++++.|++|++||..
T Consensus 256 ~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 256 FCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999 89999999999999999999999999999999999999999999999999999999999963
No 21
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-37 Score=345.68 Aligned_cols=300 Identities=17% Similarity=0.265 Sum_probs=247.0
Q ss_pred eeeec-cCCC-cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 340 VACTM-HQGS-SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 340 ~~~~~-~h~~-~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
++.++ +|.+ .|++++|+|+|+ +||+|+.|++|+|||+.+++.... .....+|...|.+++|
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~~ 69 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVAW 69 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEEE
T ss_pred EeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEEE
Confidence 44455 4877 999999999998 599999999999999987754321 1134689999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC---ceeEEe
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG---RKLFQF 493 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~---~~~~~~ 493 (1131)
+|+|++||+|+.|++|++||+..+. ......+.+|...|.+++|+|+++ +|++|+.|++|++|| ..+ .++..+
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 146 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQDD-FECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVL 146 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEEEccCCC-eEEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence 9999999999999999999998764 223456889999999999999999 899999999999999 444 345678
Q ss_pred cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce--eEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
.+|...|.+++|+| ++.+|++++.|+.|++||.+.... ...+..|...|.+++|+|+|++|++++. |+.|++
T Consensus 147 ~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~i 220 (345)
T 3fm0_A 147 NSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVRI 220 (345)
T ss_dssp CCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEE
T ss_pred cCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEEE
Confidence 89999999999976 457999999999999999987653 3577889999999999999999999986 999999
Q ss_pred EeCCC---------------CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe----EE---EEEecc
Q 001178 572 WNESE---------------GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN----ML---TSTEAE 629 (1131)
Q Consensus 572 wd~~~---------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~---~~~~~~ 629 (1131)
|+... .+++..+.+.+...|.+++|+|++..+++++.|+.|++|+...+. .. ......
T Consensus 221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 300 (345)
T 3fm0_A 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ 300 (345)
T ss_dssp EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETT
T ss_pred eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecc
Confidence 98632 133455666566689999999999999999999999999987542 11 111223
Q ss_pred CCCCCcceEEEcCCC-CEEEEEECCCcEEEEecCCCc
Q 001178 630 GGLPSLPRLRFNKEG-NLLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 630 ~~~~~i~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~ 665 (1131)
+|...|++++|+|++ .+|++++.||.|++|+..++.
T Consensus 301 ~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 301 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 455689999999987 599999999999999998774
No 22
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-37 Score=350.78 Aligned_cols=292 Identities=14% Similarity=0.141 Sum_probs=237.9
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcC------CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCG------DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
.|...|++++|||||+ +||+|+. |+.|++|+..++....... ....+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~---------------~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLC---------------TAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGC---------------SEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEe---------------cccCCCCCCEEEEEEc
Confidence 4999999999999998 6899987 6789999988776543211 1245788999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccce-eeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCC
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQ-SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~-~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h 496 (1131)
|++++| +++.||+|+|||+.+++.... .....+|.+.|++++|+|+++ +|++|+.|++|++|| .+++.+..+.+|
T Consensus 104 ~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 998655 577899999999998765432 234568999999999999999 899999999999999 888999999999
Q ss_pred ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe--cCCCceEEEEEEccCC-CEEEEEeecCCCCceEEEEe
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--DAPGLWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWN 573 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd 573 (1131)
...|.+++|++..+ .++++++.||.|++||+++.+....+ ..+...+.+++|+|++ .+|++++. ++.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEE
Confidence 99999999976543 47899999999999999987766544 3455679999999985 56777765 89999999
Q ss_pred CCCCeeeEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC-CCCEEEEEE
Q 001178 574 ESEGALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNLLVVTT 651 (1131)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~l~~~~ 651 (1131)
+++++.+..+.+|.. .|.+++|+|++ ++|++++.|++|+|||+.+++.+..+ +|...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEc
Confidence 999999999998766 89999999987 57899999999999999999887665 3445899999998 899999999
Q ss_pred CCCcEEEEecCCC
Q 001178 652 ADQGIKILANADG 664 (1131)
Q Consensus 652 ~dg~i~iw~~~~~ 664 (1131)
.||.|++|++...
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999998765
No 23
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.6e-37 Score=355.31 Aligned_cols=285 Identities=18% Similarity=0.321 Sum_probs=257.3
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+.+|.++|++++|+|++.+|++|+.||+|++||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 56999999999999999999999999999999999987554 6889999999999999999 899999999999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
.+++++..+.+|...|.+++|+| ++.+|++++.|++|++||++++.....+..|...|.++.++|++.++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 77888999999999999999976 4579999999999999999999998899999999999999999999999986
Q ss_pred CCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCC--------------------CCEEEEEEcCCcEEEEEcCCCeEE
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT--------------------RNRILAAGEDNQIKFWDMDNVNML 623 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1131)
|+.|++||+.+++....+.+|.. .+.+++|+|+ +.++++|+.|+.|++||+.++..+
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred --CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 89999999999999999988765 8999999996 678999999999999999999999
Q ss_pred EEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccccc
Q 001178 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703 (1131)
Q Consensus 624 ~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 703 (1131)
..+..|.. .|.+++|+|++++|++++.||.|++||+.++. ....+
T Consensus 332 ~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~-~~~~~-------------------------------- 376 (410)
T 1vyh_C 332 MTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTL-------------------------------- 376 (410)
T ss_dssp EEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSC-CCEEE--------------------------------
T ss_pred EEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eEEEE--------------------------------
Confidence 88876654 79999999999999999999999999986541 11000
Q ss_pred ccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEE
Q 001178 704 ERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGIL 783 (1131)
Q Consensus 704 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 783 (1131)
..|...|.+++|+|++..++
T Consensus 377 ------------------------------------------------------------~~h~~~v~~l~~~~~~~~l~ 396 (410)
T 1vyh_C 377 ------------------------------------------------------------NAHEHFVTSLDFHKTAPYVV 396 (410)
T ss_dssp ------------------------------------------------------------ECCSSCEEEEEECSSSSCEE
T ss_pred ------------------------------------------------------------cCCCCcEEEEEEcCCCCEEE
Confidence 12778899999999999999
Q ss_pred EeeecceeeEEee
Q 001178 784 ALWSNGVQKLWKW 796 (1131)
Q Consensus 784 ~~~~dg~i~iw~~ 796 (1131)
+++.||.|++|++
T Consensus 397 sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 397 TGSVDQTVKVWEC 409 (410)
T ss_dssp EEETTSEEEEEC-
T ss_pred EEeCCCcEEEEeC
Confidence 9999999999974
No 24
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.8e-37 Score=343.08 Aligned_cols=296 Identities=14% Similarity=0.136 Sum_probs=237.5
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccc-eeceeccCCCCCEEEEEEcCCCCEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMM-LQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
|...|.+++|||||+ +|++++ |+++++||.... +|+....... ........|...|.+++|+||+ .|
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 677899999999998 577776 778888873211 1111000000 0011223466789999999985 67
Q ss_pred EEEeCCCeEEEEEecCCCcccee-eeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQS-LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 502 (1131)
++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|||+ +|++|+.|++|++|| .+++++..+.+|...|.+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998765432 34568999999999999999 899999999999999 889999999999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEec--CCCceEEEEEEccC-CCEEEEEeecCCCCceEEEEeCCCCee
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD--APGLWCTTMLYSAD-GSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~-g~~l~~~~~~~~~~~~i~iwd~~~~~~ 579 (1131)
++|++... .++++++.|++|++||+++.+....+. .+...+.+++|+|+ ++++++++. ++.|++||+++++.
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTSC 249 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--C
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCcE
Confidence 99976443 588999999999999999988777654 34557899999995 567777775 89999999999999
Q ss_pred eEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCC-EEEEEECCCcEE
Q 001178 580 KRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN-LLVVTTADQGIK 657 (1131)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~~~~~dg~i~ 657 (1131)
+..+.+|.. .|.+++|+|++ ++|++|+.|++|++||+.+++.+. +. +|...|++++|+|+++ +|++++.|++|+
T Consensus 250 ~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 250 VLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 999999776 89999999998 578999999999999999987654 33 4455899999999886 677999999999
Q ss_pred EEecCCC
Q 001178 658 ILANADG 664 (1131)
Q Consensus 658 iw~~~~~ 664 (1131)
+|++.+.
T Consensus 326 ~w~v~~~ 332 (344)
T 4gqb_B 326 HHVVPTE 332 (344)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 9998765
No 25
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-37 Score=349.16 Aligned_cols=318 Identities=16% Similarity=0.194 Sum_probs=231.8
Q ss_pred ceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCcccee
Q 001178 731 PRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAA 810 (1131)
Q Consensus 731 ~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 810 (1131)
.++.++.+.....|++.... ...|...|.+++|+|||++|++++.|. +++||-
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~------------p~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~-------------- 70 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTA------------PACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG-------------- 70 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE--------------
T ss_pred eEEecCCCccccccCCCCCC------------cccccCCEEEEEECCCCCEEEEEcCCC-CccccC--------------
Confidence 34455555677888765311 134889999999999999999998753 244442
Q ss_pred eeceeecCCCCcccccCC--CCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEE----EEeCCCCCeeEEEEeC
Q 001178 811 VAPQHWQPSNGLLMTNDV--PENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMT----TFMSPPPASTFLAFHP 884 (1131)
Q Consensus 811 ~~~~~w~~~~~~~~~~~~--~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~l~~s~ 884 (1131)
.+.+|+..++....... ..+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|.+++|+|
T Consensus 71 -~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 71 -SIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp -EEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS
T ss_pred -eEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC
Confidence 22444444443221111 1157888999999999988877779999999999876543 3447899999999999
Q ss_pred CCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC
Q 001178 885 QDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGK 963 (1131)
Q Consensus 885 ~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~-~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~ 963 (1131)
++++|++|+.||.|++||+.+++++..+.+|.+.|++++|++++. ++++++.|++|++||+.+++..... ....
T Consensus 150 -dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~----~~~~ 224 (357)
T 4g56_B 150 -DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI----DFCA 224 (357)
T ss_dssp -SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC----CCTT
T ss_pred -CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee----eecc
Confidence 899999999999999999999999999999999999999999875 7899999999999999987643322 1223
Q ss_pred CCCCceEEEEcCCC-cEEEEE-eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCC
Q 001178 964 LPVGETRVQFHSDQ-VRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNS-QLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 964 ~~~~v~~v~~s~d~-~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg-~~l~s~~~dg~i~vwd~~~ 1040 (1131)
+...+.+++|+|++ .+|+++ .|+.|++||+.+++.+..+..+ ...|++++|+|++ ++|++|+.|++|+|||+++
T Consensus 225 ~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~---~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 225 SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH---SQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc---ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 33678999999985 566665 5899999999999999888776 7899999999987 5899999999999999999
Q ss_pred CceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1041 LRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
++.+..+. |...|+ +++|+|.++.+|++||.||+|++|++....
T Consensus 302 ~~~~~~~~-----------H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 302 SEVFRDLS-----------HRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CEEEEECC-----------CSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CcEeEECC-----------CCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 98765442 344444 789999888999999999999999997654
No 26
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.4e-36 Score=340.22 Aligned_cols=248 Identities=14% Similarity=0.226 Sum_probs=224.3
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|.+.|.+++|+||+++|++|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw 124 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence 577999999999999999999999999999999999876543 6788999999999999999 89999999999999
Q ss_pred e-CCC----ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEE
Q 001178 484 D-LSG----RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFS 558 (1131)
Q Consensus 484 d-~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 558 (1131)
| .++ +....+.+|.+.|.++.|.+. ..+++++.|+.|++||++++.....+..|...|.+++|+|+++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9 433 345678899999999999653 35899999999999999999998899999999999999999999999
Q ss_pred EeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 559 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
++. ++.|++||++++..+..+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+........|.++
T Consensus 202 g~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 202 GAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EeC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 986 99999999999999999988766 8999999999999999999999999999999888777655555579999
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|+|+++++++|+.||.|++||..++
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccC
Confidence 99999999999999999999997654
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.7e-37 Score=341.08 Aligned_cols=296 Identities=14% Similarity=0.162 Sum_probs=230.3
Q ss_pred CCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccc--cCCCCCCCCCeeEEEec
Q 001178 765 DSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMT--NDVPENAEDVVPCVALS 842 (1131)
Q Consensus 765 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~i~~l~~s 842 (1131)
.+...|.+++|+|||..|++++ |+++++|+... .+|+........ ......+...|.+++|+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 91 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWV 91 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEe
Confidence 3667899999999999877655 78889987432 112111000000 00000246789999999
Q ss_pred CCCCEEEEEeCCeEEEEECCCceeEEE----EeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeeccccc
Q 001178 843 KNDSYVMSAGGGKVSLFNMMNFKVMTT----FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQK 918 (1131)
Q Consensus 843 ~dg~~la~~~dg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~ 918 (1131)
||+.+++.+.||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+
T Consensus 92 ~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 92 GERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp TTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 997544444499999999998876544 448999999999999 899999999999999999999999999999999
Q ss_pred CeeEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCC-cEEEEE-eCCeEEEEeCCC
Q 001178 919 HITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ-VRLLVN-HETQLAIYDGSK 995 (1131)
Q Consensus 919 ~V~~l~~s~dg~-~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~-~d~~i~vwd~~~ 995 (1131)
.|++++|++++. +|++++.|++|++||+.+++...... ...+...+.+++|+|++ .+++++ .|+.|++||+.+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~ 246 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG----CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeee----cceeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence 999999999985 78999999999999999877543322 12233568899999964 567765 589999999999
Q ss_pred cccceeeecCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCC
Q 001178 996 MECIRQWVPQDVLSSPISSAAYSCNS-QLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQ 1074 (1131)
Q Consensus 996 ~~~~~~~~~~~~~~~~v~~i~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~ 1074 (1131)
++++..+.+| ...|++++|+|++ ++|++|+.|++|+|||+.++++.. +.+ |...|. +++|+|.
T Consensus 247 ~~~~~~~~~h---~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~----------H~~~V~--~v~~sp~ 310 (344)
T 4gqb_B 247 TSCVLSSAVH---SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQA----------HRDFVR--DATWSPL 310 (344)
T ss_dssp --CCEEEECC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECC----------CSSCEE--EEEECSS
T ss_pred CcEEEEEcCC---CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcC----------CCCCEE--EEEEeCC
Confidence 9999998877 7899999999998 589999999999999999887543 322 344444 7899997
Q ss_pred CCCeEEEEecCCcEEEEecCCCc
Q 001178 1075 EPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1075 ~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
+..+|++||.||+|++|++.+++
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC--
T ss_pred CCeEEEEEcCCCeEEEEECCCCC
Confidence 77789999999999999998765
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-36 Score=349.83 Aligned_cols=243 Identities=17% Similarity=0.239 Sum_probs=188.0
Q ss_pred cCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEe----cCCCccc---eeeeeec----------CcCCeeEEEEecCCC
Q 001178 406 KDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTY----QGSNDLC---QSLEIDA----------HVGGVNDLAFSYPNK 467 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~-~las~~~d~~i~vwd~----~~~~~~~---~~~~~~~----------h~~~V~~l~~s~d~~ 467 (1131)
..|.+.|.+++|+|+|+ +||+|+.|+.|++||+ .+++.+. ....+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 35678999999999999 9999999999999999 8776200 1112222 688999999999999
Q ss_pred ceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCce----
Q 001178 468 QLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW---- 543 (1131)
Q Consensus 468 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~---- 543 (1131)
+|++++.|+.|++||.+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+.+......+..+...
T Consensus 122 --~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 122 --SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp --EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred --EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 89999999999999988999999999999999999965 5579999999999999999998888877777665
Q ss_pred -----------EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcE
Q 001178 544 -----------CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQI 612 (1131)
Q Consensus 544 -----------v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 612 (1131)
+.++.|++++. +++++. ++.|++||+.+++.+..+..|.. .+.+++|+|++++|++++.||.|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i 271 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGTL 271 (425)
T ss_dssp --------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSCE
T ss_pred eeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCEE
Confidence 88999999865 666655 89999999999999988887665 89999999999999999999999
Q ss_pred EEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
++||+.+++.+..+..+.. .|.+++|+|++ ++++++.|+.|++||+
T Consensus 272 ~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 272 RIWHGGNGNSQNCFYGHSQ--SIVSASWVGDD-KVISCSMDGSVRLWSL 317 (425)
T ss_dssp EEECSSSBSCSEEECCCSS--CEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred EEEECCCCccceEecCCCc--cEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence 9999987644443332221 34444444444 4444444444444443
No 29
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.9e-36 Score=336.29 Aligned_cols=299 Identities=19% Similarity=0.266 Sum_probs=243.6
Q ss_pred eeeec-cCCCcEEEEEE-----ec-CCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCE
Q 001178 340 VACTM-HQGSSVVSMDF-----HP-FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISV 412 (1131)
Q Consensus 340 ~~~~~-~h~~~V~~~~f-----sp-dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 412 (1131)
+..++ +|.+.|++++| +| |++ +|++|+.|++|+|||+.+++..... ......+.+|...|
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~~V 79 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNHFV 79 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSSCE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCCce
Confidence 33445 49999999999 77 887 6999999999999999865432100 01122578999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEE
Q 001178 413 SRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ 492 (1131)
Q Consensus 413 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~ 492 (1131)
.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||..+.....
T Consensus 80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~~~~~ 154 (343)
T 2xzm_R 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGECKFS 154 (343)
T ss_dssp EEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSCEEEE
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCCceee
Confidence 999999999999999999999999999987543 6789999999999999999 89999999999999965665555
Q ss_pred ec---CCccCeEEEeecccCC--------ccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEee
Q 001178 493 FE---GHEAPVYSVCPHQKEN--------IHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 493 ~~---~h~~~v~~~~~~~~~~--------~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
.. +|...|.+++|++... +.++++++.||.|++||. .......+..|...|.+++|+|+|++|++++.
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~ 233 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC
Confidence 44 7899999999976532 268999999999999994 45566677889999999999999999999986
Q ss_pred cCCCCceEEEEeCC-CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEE--EEec---------c
Q 001178 562 SKEGDSHLVEWNES-EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLT--STEA---------E 629 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~---------~ 629 (1131)
++.|++||+. .......+.. ...+.+++|+|++.++++ +.|+.|++|++.+++... .+.. .
T Consensus 234 ----dg~v~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 234 ----DKKLLIWDILNLTYPQREFDA--GSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp ----TCEEEEEESSCCSSCSEEEEC--SSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred ----CCeEEEEECCCCcccceeecC--CCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 9999999994 4444555432 336999999999987764 567889999998876543 3321 1
Q ss_pred CCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 630 GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 630 ~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 34457899999999999999999999999998765
No 30
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.1e-36 Score=344.37 Aligned_cols=320 Identities=13% Similarity=0.162 Sum_probs=264.1
Q ss_pred eEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEE
Q 001178 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL 647 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l 647 (1131)
.+..|+..+..+.+.+.+|.. .|.+++|+|++++|++|+.||+|++||+.+++....+..|.. .|.+++|+|+++++
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~-~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSG-KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP--WVMECAFAPNGQSV 123 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT--TCCCCEECTTSSEE
T ss_pred cccccccceeEEeeccccccc-EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC--CEEEEEECCCCCEE
Confidence 455677777888889999776 899999999999999999999999999999999988887654 79999999999999
Q ss_pred EEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccC
Q 001178 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1131)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 727 (1131)
++++.|+.+++|++.+.... +
T Consensus 124 as~~~d~~v~iw~~~~~~~~-------------------------------~---------------------------- 144 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADR-------------------------------D---------------------------- 144 (380)
T ss_dssp EECCSSSCCEEEECCCCSSC-------------------------------C----------------------------
T ss_pred EEeeCCCcEEEEECCCCccc-------------------------------c----------------------------
Confidence 99999999999998654100 0
Q ss_pred CCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCcc
Q 001178 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1131)
Q Consensus 728 ~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1131)
+...+
T Consensus 145 -----------~~~~~---------------------------------------------------------------- 149 (380)
T 3iz6_a 145 -----------GNMPV---------------------------------------------------------------- 149 (380)
T ss_dssp -----------CSSTT----------------------------------------------------------------
T ss_pred -----------CCccc----------------------------------------------------------------
Confidence 00000
Q ss_pred ceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC-CEEEEEe-CCeEEEEECCCceeEEEE-----eCCCCCeeEE
Q 001178 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND-SYVMSAG-GGKVSLFNMMNFKVMTTF-----MSPPPASTFL 880 (1131)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg-~~la~~~-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l 880 (1131)
.....+|...+.+++|+|++ ..|++++ |++|++||+.+++.+..+ .+|...|.++
T Consensus 150 ------------------~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 150 ------------------SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp ------------------CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred ------------------eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence 00011577778888888864 5688887 899999999999998887 5788899999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEEee-cceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec
Q 001178 881 AFHPQDNNIIAIGMEDSTIQIYNVR-VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959 (1131)
Q Consensus 881 ~~s~~~~~~la~g~~dg~I~iwd~~-~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~ 959 (1131)
+|++.++.+|++|+.||+|++||+. .++.+..+.+|.+.|++++|+|++++|++++.|++|++||+.+++.........
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~ 291 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP 291 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc
Confidence 9987688999999999999999997 557788899999999999999999999999999999999999977644332211
Q ss_pred CC-CCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecC-CCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001178 960 PA-GKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQ-DVLSSPISSAAYSCNSQLIYATFTDGSIGVF 1036 (1131)
Q Consensus 960 ~~-~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~-~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vw 1036 (1131)
.. ......+.+++|+|+|.+|+++. |+.|++||+.+++.+..+... ..|...|++++|+|||++|++|+.|++|++|
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 11 11123588999999999999975 899999999998887776322 3458899999999999999999999999999
Q ss_pred ECCCCc
Q 001178 1037 DADSLR 1042 (1131)
Q Consensus 1037 d~~~~~ 1042 (1131)
++...+
T Consensus 372 ~~~~~~ 377 (380)
T 3iz6_a 372 AFSGHR 377 (380)
T ss_dssp ECCSSS
T ss_pred ecCCCc
Confidence 987654
No 31
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.5e-35 Score=328.14 Aligned_cols=285 Identities=20% Similarity=0.311 Sum_probs=251.6
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++... .+.+|...|.+++|+|++++|
T Consensus 21 gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l 80 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSDSNLL 80 (312)
T ss_dssp CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTSSEE
T ss_pred ccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCCCCEE
Confidence 5999999999999998 59999999999999998887654 467899999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++|| .+++.+..+..|..+|.++
T Consensus 81 ~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 155 (312)
T 4ery_A 81 VSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155 (312)
T ss_dssp EEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred EEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEE
Confidence 999999999999999887554 6789999999999999999 899999999999999 7889999999999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEec-CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 582 (1131)
+|++ ++.++++++.||.|++||+++.+....+. .+...+..++|+|++++|++++. ++.|++||+.+++.+..
T Consensus 156 ~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~ 229 (312)
T 4ery_A 156 HFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKT 229 (312)
T ss_dssp EECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTTEEEEE
T ss_pred EEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCCcEEEE
Confidence 9965 56799999999999999999887766554 45567999999999999999986 89999999999999999
Q ss_pred EecccCCc--eEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEE--CCCcEEE
Q 001178 583 YIGFRKKS--AGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT--ADQGIKI 658 (1131)
Q Consensus 583 ~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~--~dg~i~i 658 (1131)
+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+++++++++ .|+.|++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~~d~~i~~ 307 (312)
T 4ery_A 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALENDKTIKL 307 (312)
T ss_dssp ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECTTTCCEEE
T ss_pred EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEccCCccEEE
Confidence 98876532 22233346788999999999999999999999988876644 799999999999999997 6999999
Q ss_pred EecC
Q 001178 659 LANA 662 (1131)
Q Consensus 659 w~~~ 662 (1131)
|+..
T Consensus 308 W~~d 311 (312)
T 4ery_A 308 WKSD 311 (312)
T ss_dssp EECC
T ss_pred ecCC
Confidence 9853
No 32
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-36 Score=349.43 Aligned_cols=303 Identities=15% Similarity=0.235 Sum_probs=246.7
Q ss_pred eeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEEC----CCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDV----GLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 342 ~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
....|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++.+..... ...+.. .........+|.+.|.+++|
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~v~~~~~ 116 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAELRH--PFALSASSGKTTNQVTCLAW 116 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEEEC--CCCCC------CBCEEEEEE
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-cccccc--cccccccccCCCCceEEEEE
Confidence 334578999999999999845999999999999999 88773110000 000000 00000112347889999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCC
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h 496 (1131)
+|++++|++|+.||.|++|| .+++.+ ..+.+|...|.+++|+|+++ +|++++.|+.|++|| .+++.+..+..+
T Consensus 117 s~~~~~l~~~~~dg~i~i~~-~~~~~~---~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 190 (425)
T 1r5m_A 117 SHDGNSIVTGVENGELRLWN-KTGALL---NVLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFELK 190 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEE-TTSCEE---EEECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred cCCCCEEEEEeCCCeEEEEe-CCCCee---eeccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeecc
Confidence 99999999999999999999 444433 36788999999999999999 899999999999999 788888888888
Q ss_pred ccC---------------eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEee
Q 001178 497 EAP---------------VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 497 ~~~---------------v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
... +.+++|.+. ..+++++.||.|++||+++......+..+...|.+++|+|++++|++++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 267 (425)
T 1r5m_A 191 ETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD 267 (425)
T ss_dssp ---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred ccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC
Confidence 777 888988753 46899999999999999999888888889999999999999999999986
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1131)
++.|++||+.+++.+..+..|.. .+.+++|+|++ ++++++.|+.|++||+.+++.+..+..+.. .|.+++|+
T Consensus 268 ----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~s 339 (425)
T 1r5m_A 268 ----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGRIS 339 (425)
T ss_dssp ----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEEEC
T ss_pred ----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEEEc
Confidence 89999999999999999887655 89999999999 999999999999999999999888876554 79999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCC
Q 001178 642 KEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 642 p~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
|++++|++++.||.|++|++.++
T Consensus 340 ~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 340 QDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp TTSSEEEEEETTSCEEEEECHHH
T ss_pred CCCCEEEEEECCCeEEEEECCCC
Confidence 99999999999999999998765
No 33
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.2e-36 Score=328.46 Aligned_cols=248 Identities=18% Similarity=0.302 Sum_probs=224.1
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
++.+|.+.|.+++|+||+++||+|+.||+|++||+.++..+. .+.+|..+|.+++|+|+++ +|++|+.|++|++|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEE
Confidence 578999999999999999999999999999999999876543 6788999999999999999 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce-eEEecCCCceEEEEEEcc-CCCEEEEEe
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSA-DGSRLFSCG 560 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~-~g~~l~~~~ 560 (1131)
| .+++.+..+.+|...|.+++|+| ++.+|++|+.|++|++||+++... ...+..|...|.+++|+| ++..|++++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9 88999999999999999999975 457999999999999999987744 456788999999999999 678999998
Q ss_pred ecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC--CCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT--TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
. |+.|++||+.++.....+..++...+..+.|+| ++.+|++++.|+.|++||+.+++++..+..|.. .|.++
T Consensus 161 ~----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~ 234 (304)
T 2ynn_A 161 L----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFA 234 (304)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEE
T ss_pred C----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEEE
Confidence 7 999999999988877777766666888899986 678999999999999999999999998886654 79999
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|+|++++|++++.||.|++||..++
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999999999999998765
No 34
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.6e-36 Score=341.39 Aligned_cols=307 Identities=18% Similarity=0.289 Sum_probs=246.8
Q ss_pred eeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 340 ~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
+.+.++|.+.|+|++|||||+ +||+|+ +++++||++.+++.+.......-. ..............+...|.+++|+|
T Consensus 57 ~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECT
T ss_pred eEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEECC
Confidence 445668999999999999998 588886 789999999998875421100000 00000000011123445699999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
||++||+|+.|++|++||+.+++.+ ..+.+|...|.+++|+|+++ +|++++.|++|++|| .++++...+. +..
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~ 207 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIV---MILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IED 207 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEE---EEEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence 9999999999999999999987644 36789999999999999999 799999999999999 7777776665 567
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe-------cCCCceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-------DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
.+.+++|++ .++.+|++++.||.|++||++++.....+ ..|...|.+++|+|+|++|++++. ++.|++
T Consensus 208 ~v~~~~~~~-~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~ 282 (393)
T 1erj_A 208 GVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKL 282 (393)
T ss_dssp CEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEE
T ss_pred CcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEE
Confidence 799999876 35689999999999999999988766655 467789999999999999999986 999999
Q ss_pred EeCCCC------------eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEE
Q 001178 572 WNESEG------------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1131)
Q Consensus 572 wd~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1131)
||+++. .+...+.+|.. .+.+++|+|++.+|++|+.|+.|++||..+++.+..+..|.. .|.+++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v~ 359 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVA 359 (393)
T ss_dssp EEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEE
T ss_pred EECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEEE
Confidence 998753 34556777665 899999999999999999999999999999999988876654 799999
Q ss_pred EcC------CCCEEEEEECCCcEEEEecCC
Q 001178 640 FNK------EGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 640 ~sp------~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
|++ ++++|++|+.||.|++|++..
T Consensus 360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 876 688999999999999999754
No 35
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-36 Score=332.04 Aligned_cols=294 Identities=15% Similarity=0.214 Sum_probs=230.6
Q ss_pred eeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceec-c-CCCCCEEEEE
Q 001178 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIV-K-DSSISVSRVA 416 (1131)
Q Consensus 340 ~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~~~ 416 (1131)
+.+++ +|.+.|++++|+|+ +||+|+.|++|+|||+.++..... ..+ . +|...|.+++
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~-----------------~~~~~~~h~~~v~~v~ 65 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI-----------------DVLDETAHKKAIRSVA 65 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE-----------------EEECTTCCCSCEEEEE
T ss_pred cceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE-----------------EEEecCCccCCEEEEE
Confidence 34445 49999999999997 699999999999999987532110 022 3 4999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCC----ccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeC-CC----
Q 001178 417 WSPDGNFIGVAFTKHLIHLYTYQGSN----DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SG---- 487 (1131)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~----~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~-~~---- 487 (1131)
|+|++++||+|+.|++|++||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||. .+
T Consensus 66 ~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 66 WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp ECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCC
T ss_pred ECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCe
Confidence 99999999999999999999996432 1223446789999999999999999 8999999999999994 32
Q ss_pred ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC--ceeEEecCCCceEEEEEEccC--CCEEEEEeecC
Q 001178 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV--GSRVDYDAPGLWCTTMLYSAD--GSRLFSCGTSK 563 (1131)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~~~ 563 (1131)
+++..+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.++.|+|+ +.+|++++.
T Consensus 144 ~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-- 219 (330)
T 2hes_X 144 ECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD-- 219 (330)
T ss_dssp EEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET--
T ss_pred EEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC--
Confidence 45678899999999999976 4579999999999999998766 456678889999999999998 778999986
Q ss_pred CCCceEEEEeCCCC--------eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeE--EEEEeccCCCC
Q 001178 564 EGDSHLVEWNESEG--------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM--LTSTEAEGGLP 633 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~ 633 (1131)
|+.|++||+..+ .....+...+...|.+++|++++ +|++++.||.|++|+..+++. .... ...+..
T Consensus 220 --D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~ 295 (330)
T 2hes_X 220 --DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGV 295 (330)
T ss_dssp --TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTT
T ss_pred --CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cccccc
Confidence 899999998654 34444555345589999999654 899999999999999988753 2222 223433
Q ss_pred -CcceEEEcC--CCCEEEEEECCCcEEEEecCC
Q 001178 634 -SLPRLRFNK--EGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 634 -~i~~v~~sp--~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
.|.+++|+| ++++|++++.||.|++|++..
T Consensus 296 ~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 296 YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 689999999 789999999999999999754
No 36
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.2e-35 Score=331.57 Aligned_cols=301 Identities=22% Similarity=0.282 Sum_probs=256.6
Q ss_pred ceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 339 AVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 339 ~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
.+..+| +|.+.|++|+|+|++..+||||+.||+|+|||+.+++..... ....+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEE
Confidence 344556 499999999999985457999999999999999876643311 12257899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCc--eeEEecC
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR--KLFQFEG 495 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~ 495 (1131)
+|||++|++++.|+.|++|+........ ....+...+..+.+++++. ++++++.|+.+++||..+. ....+.+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999998865433 4567888899999999999 7999999999999994333 3445678
Q ss_pred CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
|...+..++|.+.....++++++.|+.|++||+++......+..|...|.+++|+|++++|++++. |+.|++||+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence 999999999988887789999999999999999999999999999999999999999999999986 8999999999
Q ss_pred CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec-------cCCCCCcceEEEcCCCCEEE
Q 001178 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA-------EGGLPSLPRLRFNKEGNLLV 648 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~i~~v~~sp~~~~l~ 648 (1131)
+++.+..+..+ ..+.+++|+|++. +++++.|+.|++||+.++..+..+.. ..+...|++++|+|++++|+
T Consensus 246 ~~~~~~~~~~~--~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 322 (340)
T 4aow_A 246 EGKHLYTLDGG--DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322 (340)
T ss_dssp TTEEEEEEECS--SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred cCceeeeecCC--ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence 99999888754 3799999999875 55667799999999999887776543 24555899999999999999
Q ss_pred EEECCCcEEEEecCCCc
Q 001178 649 VTTADQGIKILANADGL 665 (1131)
Q Consensus 649 ~~~~dg~i~iw~~~~~~ 665 (1131)
+|+.||.|+||++.+|.
T Consensus 323 sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 323 AGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEETTSCEEEEEEEC--
T ss_pred EEeCCCEEEEEeCCCcC
Confidence 99999999999998873
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-37 Score=356.32 Aligned_cols=293 Identities=16% Similarity=0.270 Sum_probs=246.9
Q ss_pred cCCCcEEEEEEecCCCcEEEEE----------cCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVG----------CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR 414 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 414 (1131)
.+...|.+++|+|+|+.+||+| +.||.|+|||+.+++.... + ....|...|.+
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~ 72 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFND 72 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEE
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEE
Confidence 3456899999999998679999 8899999999998764310 0 12368899999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCCc-cceeeeeecCcCCeeEEEEecC-CCceEEEEEcCCCcEEEEe-CCCc---
Q 001178 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSND-LCQSLEIDAHVGGVNDLAFSYP-NKQLCIVTCGDDKLIRVWD-LSGR--- 488 (1131)
Q Consensus 415 ~~~spdg~~las~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~V~~l~~s~d-~~~~~l~s~s~d~~i~iwd-~~~~--- 488 (1131)
++|+|++++|++|+.||.|++||+.+... ......+.+|...|++++|+|+ ++ +|++++.|+.|++|| .+++
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccc
Confidence 99999999999999999999999987211 1234467899999999999998 66 799999999999999 5554
Q ss_pred ---eeE---EecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC------CceEEEEEEccCC-CE
Q 001178 489 ---KLF---QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------GLWCTTMLYSADG-SR 555 (1131)
Q Consensus 489 ---~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~g-~~ 555 (1131)
... .+.+|...|.+++|++.. +.++++++.||.|++||+++.+....+..+ ...|.+++|+|++ .+
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE
T ss_pred ccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE
Confidence 222 346799999999997642 479999999999999999998888887776 6789999999997 57
Q ss_pred EEEEeecCCCCc---eEEEEeCCCC-eeeEEEe-cccCCceEEEEEeC-CCCEEEEEEcCCcEEEEEcCCCeEEEEEecc
Q 001178 556 LFSCGTSKEGDS---HLVEWNESEG-ALKRTYI-GFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEAE 629 (1131)
Q Consensus 556 l~~~~~~~~~~~---~i~iwd~~~~-~~~~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1131)
+++++. ++ .|++||++++ ..+..+. +|.. .+.+++|+| ++++|++++.||.|++||+.+++.+..+..+
T Consensus 230 l~~~~~----d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 230 VATATG----SDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp EEEEEC----CSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred EEEEEC----CCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 777775 55 9999999986 5666676 6554 899999999 8999999999999999999999999888866
Q ss_pred CCCCCcceEEEcCCC-CEEEEEECCCcEEEEecCCC
Q 001178 630 GGLPSLPRLRFNKEG-NLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 630 ~~~~~i~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.. .|.+++|+|++ .++++++.|+.|++|++.+.
T Consensus 305 ~~--~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 305 GN--WCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SS--CCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CC--ceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 54 79999999998 89999999999999999776
No 38
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.8e-35 Score=332.53 Aligned_cols=287 Identities=15% Similarity=0.190 Sum_probs=252.1
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|.+.|.+++|+||+++||+|+.|++|++||..+++... .+..|...|.+++|+|++. ++++|+.|+.+++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence 477999999999999999999999999999999998876443 5678999999999999999 89999999999999
Q ss_pred eC-CC------ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc--CCC
Q 001178 484 DL-SG------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA--DGS 554 (1131)
Q Consensus 484 d~-~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~g~ 554 (1131)
+. .. .....+.+|...|.+++|++ ++..|++++.|++|++||+++++....+..|...|.++.++| +|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 83 22 24566778999999999965 457899999999999999999999889999999999999987 578
Q ss_pred EEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCC
Q 001178 555 RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS 634 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1131)
+|++++. |+.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.|++|++||+..++.+..+..+.....
T Consensus 212 ~l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 212 TFVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286 (354)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred EEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence 9999986 99999999999999999988766 899999999999999999999999999999988877765555456
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCc
Q 001178 635 LPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARP 714 (1131)
Q Consensus 635 i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~ 714 (1131)
+.+++|+|++.++++++.|+.|++||+.++.. ..
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~--------------------------------------------- 320 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR-VS--------------------------------------------- 320 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSE-EE---------------------------------------------
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCce-EE---------------------------------------------
Confidence 88999999999999999999999999866511 00
Q ss_pred cccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEE
Q 001178 715 STILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLW 794 (1131)
Q Consensus 715 ~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw 794 (1131)
.+ .+|...|.+++|+|+|.+|++++.|+.+++|
T Consensus 321 --------------------------------------------~l---~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 321 --------------------------------------------IL---FGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp --------------------------------------------EE---CCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred --------------------------------------------EE---ECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 00 2378899999999999999999999999999
Q ss_pred e
Q 001178 795 K 795 (1131)
Q Consensus 795 ~ 795 (1131)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 5
No 39
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3e-35 Score=325.85 Aligned_cols=247 Identities=20% Similarity=0.324 Sum_probs=218.5
Q ss_pred eccCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEecCCCc--cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcE
Q 001178 404 IVKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQGSND--LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg-~~las~~~d~~i~vwd~~~~~~--~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 480 (1131)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++||+.+... ......+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 578999999999999965 8999999999999999975432 123456889999999999999999 89999999999
Q ss_pred EEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccC------C
Q 001178 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD------G 553 (1131)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~------g 553 (1131)
++|| .+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||++ ......+..|...|.++.+.|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999 88999999999999999999965 55799999999999999996 4566677888899999999985 4
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCC
Q 001178 554 SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLP 633 (1131)
Q Consensus 554 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1131)
..+++++. ++.|++||+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..+.
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--- 238 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD--- 238 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS---
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---
Confidence 57888886 99999999999999999988766 89999999999999999999999999999999988887543
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 634 SLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 634 ~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.|.+++|+|++.++++++.+ .+++|++...
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 69999999999999988765 5999998654
No 40
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.5e-35 Score=327.71 Aligned_cols=312 Identities=14% Similarity=0.198 Sum_probs=244.4
Q ss_pred CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEE-eccCCCCCcceEEEcCCCCEEEEEECCCc
Q 001178 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST-EAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1131)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~i~~v~~sp~~~~l~~~~~dg~ 655 (1131)
.+++..+.+|....+.+++|+|++++|++|+.|+.|++||+.++...... ...++...|.+++|+|++++|++++.|+.
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 34667788887768999999999999999999999999999888654332 23455668999999999999999999999
Q ss_pred EEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceecc
Q 001178 656 IKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLE 735 (1131)
Q Consensus 656 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 735 (1131)
+++|+...+...
T Consensus 85 v~iw~~~~~~~~-------------------------------------------------------------------- 96 (345)
T 3fm0_A 85 TCIWKKNQDDFE-------------------------------------------------------------------- 96 (345)
T ss_dssp EEEEEECCC-EE--------------------------------------------------------------------
T ss_pred EEEEEccCCCeE--------------------------------------------------------------------
Confidence 999987543000
Q ss_pred ccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeecee
Q 001178 736 DISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQH 815 (1131)
Q Consensus 736 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 815 (1131)
. +..
T Consensus 97 ----------------------------------------------~--------~~~---------------------- 100 (345)
T 3fm0_A 97 ----------------------------------------------C--------VTT---------------------- 100 (345)
T ss_dssp ----------------------------------------------E--------EEE----------------------
T ss_pred ----------------------------------------------E--------EEE----------------------
Confidence 0 000
Q ss_pred ecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCc---eeEEEEeCCCCCeeEEEEeCCCCcEEE
Q 001178 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNF---KVMTTFMSPPPASTFLAFHPQDNNIIA 891 (1131)
Q Consensus 816 w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~---~~~~~~~~~~~~i~~l~~s~~~~~~la 891 (1131)
+ .+|...|.+++|+|++++|++++ |++|++||+.++ .++..+..|...|.+++|+| ++.+|+
T Consensus 101 ------------~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~ 166 (345)
T 3fm0_A 101 ------------L-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLA 166 (345)
T ss_dssp ------------E-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEE
T ss_pred ------------c-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEE
Confidence 0 14778888999999999999988 889999998765 45667888999999999999 899999
Q ss_pred EEeCCCcEEEEEeecce--eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee----------eeeeeec
Q 001178 892 IGMEDSTIQIYNVRVDE--VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR----------KSIAIQL 959 (1131)
Q Consensus 892 ~g~~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~----------~~~~~~~ 959 (1131)
+|+.|++|++|+..+++ +...+.+|.+.|++++|+|+|++|++++.|++|++|+....... .......
T Consensus 167 s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (345)
T 3fm0_A 167 SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT 246 (345)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEE
T ss_pred EEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEE
Confidence 99999999999998875 45788999999999999999999999999999999997432211 0111222
Q ss_pred CCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCcccce----e--eecCCCCCCCeEEEEEccCC-CEEEEEecCC
Q 001178 960 PAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIR----Q--WVPQDVLSSPISSAAYSCNS-QLIYATFTDG 1031 (1131)
Q Consensus 960 ~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~~~~~----~--~~~~~~~~~~v~~i~~s~dg-~~l~s~~~dg 1031 (1131)
..+.+...+..++|+|++..|+++ .|+.|++|+...+.... . ...+..|...|++++|+|++ .+||+|+.||
T Consensus 247 ~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg 326 (345)
T 3fm0_A 247 LSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326 (345)
T ss_dssp ECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS
T ss_pred ecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC
Confidence 333355789999999999999885 59999999987643211 1 11234568999999999998 4999999999
Q ss_pred cEEEEECCCCceeeE
Q 001178 1032 SIGVFDADSLRLRCR 1046 (1131)
Q Consensus 1032 ~i~vwd~~~~~~~~~ 1046 (1131)
+|++|++.+++....
T Consensus 327 ~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 327 EVAFWKYQRPEGLHH 341 (345)
T ss_dssp CEEEEEECC------
T ss_pred cEEEEEecCCCCccc
Confidence 999999988776543
No 41
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=3.3e-34 Score=370.05 Aligned_cols=521 Identities=12% Similarity=0.085 Sum_probs=376.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
+...+.+.+|||+ + ||..+. +.|++|++.+++.. .+.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~--------------------~lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTR--------------------KIVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEE--------------------EEECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEE--------------------EeeeCCCcccCeEECCCCCEEE
Confidence 5568999999964 4 555543 69999999887653 2568999999999999999999
Q ss_pred EEeCC------CeEEEEEecCCCccceeeeeecCcCCe-------eEEEEecCCCceEEEEEcCC------CcEEEEeCC
Q 001178 426 VAFTK------HLIHLYTYQGSNDLCQSLEIDAHVGGV-------NDLAFSYPNKQLCIVTCGDD------KLIRVWDLS 486 (1131)
Q Consensus 426 s~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~V-------~~l~~s~d~~~~~l~s~s~d------~~i~iwd~~ 486 (1131)
+++.+ ..|.+||+.+++. ..+..|...+ .+++|+|||+ ++++++.+ ..|.+||..
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88653 3799999988752 2577888888 9999999998 67777754 457788855
Q ss_pred CceeEEecCCccCeEEEeecccCCccEEEEEec------------CCeEEEEeCCCCceeEEecCCCceEEEEEEccCCC
Q 001178 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV------------DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS 554 (1131)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~ 554 (1131)
+.....+..+. ...++|++ | ++++++. +...++|..........+..+...+.++.|+++ .
T Consensus 143 ~g~~~~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~ 215 (1045)
T 1k32_A 143 GINFVPLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R 215 (1045)
T ss_dssp GTEEEECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E
T ss_pred CCCeEEecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E
Confidence 55555555443 34566764 5 7777653 345667754443455566788889999999988 4
Q ss_pred EEEEEeecCCCCceEEEEeCCC-CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC---
Q 001178 555 RLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG--- 630 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 630 (1131)
.++++.. ++.+.+|.+.. +.....+..+. .+...+|+|+|++++.+ .++.|++|++.... +..+..+.
T Consensus 216 l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~ 287 (1045)
T 1k32_A 216 IYFITDI----DGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLES 287 (1045)
T ss_dssp EEEEECT----TSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCB
T ss_pred EEEEEec----cCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCcccc
Confidence 4444432 45566665432 33444454443 35667999999988887 48999999995443 33443321
Q ss_pred ------CCCCcceEEEc-CCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccccc
Q 001178 631 ------GLPSLPRLRFN-KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703 (1131)
Q Consensus 631 ------~~~~i~~v~~s-p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 703 (1131)
+...+..++|+ |||+.+++++ ++.+.+|+...+.. ..
T Consensus 288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~-~~---------------------------------- 331 (1045)
T 1k32_A 288 PEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-LK---------------------------------- 331 (1045)
T ss_dssp CCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-EE----------------------------------
T ss_pred cccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce-EE----------------------------------
Confidence 11258899999 9999998887 78899998765410 00
Q ss_pred ccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCcc-ceEEEEeecCCceE
Q 001178 704 ERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSAS-KVARLLYTNSGIGI 782 (1131)
Q Consensus 704 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l 782 (1131)
+ ..+.. .+..++|+ +|+.+
T Consensus 332 --------------------------------------------------------~---~~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 332 --------------------------------------------------------V---PEPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp --------------------------------------------------------C---SCCSCEEEEEECSS-SEEEE
T ss_pred --------------------------------------------------------c---cCCCcceEEeeeEc-CCCeE
Confidence 0 01333 67788999 99999
Q ss_pred EEeeecceee-EEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEE
Q 001178 783 LALWSNGVQK-LWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFN 860 (1131)
Q Consensus 783 ~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd 860 (1131)
+.++.++.+. +|++.. +.... +. .+...+..++|||||++|++++ ++.|++||
T Consensus 352 ~~~s~~~~l~~~~d~~~----------------------~~~~~--l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d 406 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRT----------------------GKAEK--FE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVD 406 (1045)
T ss_dssp EEEETTEEEEEEEETTT----------------------CCEEE--CC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEECCCceEEEEECCC----------------------CCceE--ec-CCccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence 9888766665 665432 22211 22 4667899999999999999988 78999999
Q ss_pred CCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC----------cEEEEEeecceeEEeecccccCeeEEEEccCCC
Q 001178 861 MMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS----------TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN 930 (1131)
Q Consensus 861 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg----------~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~ 930 (1131)
+.+++....+..|...+.+++||| |+++|++++.++ .|++||+.+++ +..+..|...+.+++|+|||+
T Consensus 407 ~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~ 484 (1045)
T 1k32_A 407 LETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK 484 (1045)
T ss_dssp TTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred CCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC
Confidence 999998888878889999999999 888888877654 89999999887 677888988999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeee-------ee----------------------eec--------CCCCCCCCceEEEE
Q 001178 931 ILVSSGSDAQLIFWNTDTWEKRKS-------IA----------------------IQL--------PAGKLPVGETRVQF 973 (1131)
Q Consensus 931 ~l~s~~~Dg~v~lwd~~~~~~~~~-------~~----------------------~~~--------~~~~~~~~v~~v~~ 973 (1131)
+|++++.++...+|+......... .. +.. ....+...+..+++
T Consensus 485 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~ 564 (1045)
T 1k32_A 485 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP 564 (1045)
T ss_dssp EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEE
T ss_pred EEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEE
Confidence 999999988888887543221000 00 000 00012245778999
Q ss_pred cCCCcEEEE------------E--eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 974 HSDQVRLLV------------N--HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 974 s~d~~~l~~------------~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
+|||.++++ + ....+++||+.+++..... ..+.+++|||||++|++++.+ .|++||+.
T Consensus 565 s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~ 636 (1045)
T 1k32_A 565 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-------NNLTDLRLSADRKTVMVRKDD-GKIYTFPL 636 (1045)
T ss_dssp CSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-------EEEEEEEECTTSCEEEEEETT-SCEEEEES
T ss_pred cCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-------cCcceEEECCCCCEEEEEcCC-cEEEEeCc
Confidence 999987775 1 2457889999888753322 368899999999999999855 89999998
Q ss_pred CCc
Q 001178 1040 SLR 1042 (1131)
Q Consensus 1040 ~~~ 1042 (1131)
+++
T Consensus 637 ~~~ 639 (1045)
T 1k32_A 637 EKP 639 (1045)
T ss_dssp SCT
T ss_pred cCc
Confidence 877
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.2e-35 Score=327.35 Aligned_cols=285 Identities=13% Similarity=0.157 Sum_probs=242.1
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
+.+.|.+++|+|||+ +++++..++.+.+|+........ ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 667899999999998 57777766666665443322211 2347999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeee--cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCc--eeEEecCCccCe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEID--AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR--KLFQFEGHEAPV 500 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~--~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~--~~~~~~~h~~~v 500 (1131)
+++ ||.|++||+.++........+. +|...|.+++|+|+++ ++++++.|+.|++|| .+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999876554444444 7999999999999999 899999999999999 5555 567788899999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
.+++|++ +++++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999965 5689999999999999999999888888889999999999999999999986 899999999999988
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
..+. ....+.+++|+|+++++++++.++.|++||+.+++... +. .+...|.+++|+|+++++++++.||.|++|+
T Consensus 219 ~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec--CCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 8775 33479999999999999999999999999999887643 33 3444899999999999999999999999999
Q ss_pred cCCC
Q 001178 661 NADG 664 (1131)
Q Consensus 661 ~~~~ 664 (1131)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8765
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.3e-34 Score=318.58 Aligned_cols=250 Identities=23% Similarity=0.347 Sum_probs=224.2
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|...|.+++|+|+|++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 578999999999999999999999999999999998876443 5789999999999999999 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
| .+++.+..+.+|...|.+++|++ ++.++++++.|+.|++||+++......+..|...|.++.|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9 88899999999999999999965 5579999999999999999999888888899999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc-
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN- 641 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s- 641 (1131)
++.|++||+++++.+..+...+...+..++|+|+++++++++.||.|++||+.+++.+..+..+..........++
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred ---CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 8999999999999888887666668999999999999999999999999999999998888766543223333444
Q ss_pred CCCCEEEEEECCCcEEEEecCCC
Q 001178 642 KEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 642 p~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+++.++++|+.||.|++||+.++
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTC
T ss_pred CCCcEEEEECCCCEEEEEECCCc
Confidence 67899999999999999998765
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.1e-34 Score=318.72 Aligned_cols=315 Identities=13% Similarity=0.162 Sum_probs=263.5
Q ss_pred CccccccCCCCCcccccCCC---------cccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccc
Q 001178 316 SVDEATYPVPSQQATWSLDD---------LPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSK 386 (1131)
Q Consensus 316 ~~~~~~~s~~~~~~~~~~~~---------~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~ 386 (1131)
.+..++++|+|+........ ........++|...|++++|+|+++ +|++|+ ||.|++||+.+++....
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~~- 87 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP- 87 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC-
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCceee-
Confidence 46678899999865443321 1234555668999999999999998 588888 99999999988764431
Q ss_pred cceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCC
Q 001178 387 PFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPN 466 (1131)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~ 466 (1131)
+. .....+|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|++
T Consensus 88 -~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~ 153 (337)
T 1gxr_A 88 -VS------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDS 153 (337)
T ss_dssp -SE------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTS
T ss_pred -ee------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECCCC
Confidence 10 0012378999999999999999999999999999999987632 334678899999999999999
Q ss_pred CceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEE
Q 001178 467 KQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCT 545 (1131)
Q Consensus 467 ~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1131)
+ ++++++.|+.|++|| .+++.+..+.+|...|.+++|++ ++.++++++.||.|++||+++.+....+. +...+.
T Consensus 154 ~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~ 228 (337)
T 1gxr_A 154 K--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIF 228 (337)
T ss_dssp S--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEE
T ss_pred C--EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC--CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceE
Confidence 9 899999999999999 78888899999999999999965 55899999999999999999887776654 566799
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEE
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTS 625 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1131)
+++|+|+++++++++. ++.|++||+.+++.. .+..|.. .+.+++|+|+++++++++.||.|++||+.+++.+..
T Consensus 229 ~~~~s~~~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 229 SLGYCPTGEWLAVGME----SSNVEVLHVNKPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EEEECTTSSEEEEEET----TSCEEEEETTSSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEECCCCCEEEEEcC----CCcEEEEECCCCCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 9999999999999986 889999999988754 4555444 899999999999999999999999999999988755
Q ss_pred EeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 626 TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 626 ~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
... ...+.+++|+|+++++++++.||.|++|++
T Consensus 303 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 303 SKE---SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEC---SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ecC---CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 443 337999999999999999999999999986
No 45
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-34 Score=357.61 Aligned_cols=292 Identities=21% Similarity=0.292 Sum_probs=249.8
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.|.+.|++++|+|++..+|++|+.||+|+|||+.++...... ....+.+|...|.+++|+|+|++|
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~v~~s~~g~~l 445 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV--------------AQRRLTGHSHFVEDVVLSSDGQFA 445 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE--------------EEEEEECCSSCEEEEEECTTSSEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc--------------ccceecCCCCcEEEEEECCCCCEE
Confidence 599999999999987668999999999999999875432210 112477999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEe----cCCccCe
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF----EGHEAPV 500 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~----~~h~~~v 500 (1131)
++|+.|++|+|||+.++.... .+.+|...|.+++|+|+++ +|++|+.|++|++||..+.+...+ .+|...|
T Consensus 446 ~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp EEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred EEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence 999999999999999876543 6789999999999999999 799999999999999655554443 4789999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
.+++|++......+++++.|++|++||+++......+..|...|.+++|+|+|++|++++. |+.|++||+.+++.+
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGKKL 596 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTTEEE
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCceE
Confidence 9999988765578999999999999999999888899999999999999999999999986 999999999999988
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCC-----------------CCCcceEEEcCC
Q 001178 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG-----------------LPSLPRLRFNKE 643 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~i~~v~~sp~ 643 (1131)
..+.. ...+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+++++|+|+
T Consensus 597 ~~~~~--~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd 673 (694)
T 3dm0_A 597 YSLEA--NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD 673 (694)
T ss_dssp ECCBC--SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred EEecC--CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence 77654 34799999999988777665 56699999999988877653211 113578999999
Q ss_pred CCEEEEEECCCcEEEEecC
Q 001178 644 GNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~ 662 (1131)
|++|++|+.||.|++|++.
T Consensus 674 g~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 674 GSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SSEEEEEETTSEEEEEEC-
T ss_pred CCEEEEEcCCCeEEEEecc
Confidence 9999999999999999974
No 46
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-34 Score=316.91 Aligned_cols=307 Identities=14% Similarity=0.206 Sum_probs=232.0
Q ss_pred CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC--eEEEEEeccCCCCCcceEEEcCCCCEEEEEECC
Q 001178 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
+.+++..+.+|.. .|.+++|+|+ +|++|+.|+.|++||+..+ .....+....|...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4566778888766 8999999987 9999999999999999875 344444333355689999999999999999999
Q ss_pred CcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCcee
Q 001178 654 QGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRN 733 (1131)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 733 (1131)
+.|++|+........
T Consensus 80 ~~v~iw~~~~~~~~~----------------------------------------------------------------- 94 (330)
T 2hes_X 80 STVSIWAKEESADRT----------------------------------------------------------------- 94 (330)
T ss_dssp SCEEEEEC------------------------------------------------------------------------
T ss_pred CcEEEEEcccCcCcc-----------------------------------------------------------------
Confidence 999999975320000
Q ss_pred ccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeec
Q 001178 734 LEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAP 813 (1131)
Q Consensus 734 ~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 813 (1131)
.. .. + +..
T Consensus 95 --------------------------------~~-----------~~-~--------~~~-------------------- 102 (330)
T 2hes_X 95 --------------------------------FE-----------MD-L--------LAI-------------------- 102 (330)
T ss_dssp --------------------------------CC-----------CE-E--------EEE--------------------
T ss_pred --------------------------------cc-----------ce-e--------EEE--------------------
Confidence 00 00 0 000
Q ss_pred eeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCC----ceeEEEEeCCCCCeeEEEEeCCCCc
Q 001178 814 QHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMN----FKVMTTFMSPPPASTFLAFHPQDNN 888 (1131)
Q Consensus 814 ~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~ 888 (1131)
+ .+|...|.+++|+|+|++|++++ |++|++||+.. .+++..+.+|...|.+++|+| ++.
T Consensus 103 --------------~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~ 166 (330)
T 2hes_X 103 --------------I-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEA 166 (330)
T ss_dssp --------------E-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSS
T ss_pred --------------E-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCC
Confidence 0 14788899999999999999998 89999999842 356778899999999999999 899
Q ss_pred EEEEEeCCCcEEEEEeecc--eeEEeecccccCeeEEEEccC--CCEEEEEeCCCcEEEEEcCCCcee---eeeeeecCC
Q 001178 889 IIAIGMEDSTIQIYNVRVD--EVKTKLKGHQKHITGLAFSTN--LNILVSSGSDAQLIFWNTDTWEKR---KSIAIQLPA 961 (1131)
Q Consensus 889 ~la~g~~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~s~d--g~~l~s~~~Dg~v~lwd~~~~~~~---~~~~~~~~~ 961 (1131)
+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+... .........
T Consensus 167 ~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence 9999999999999999876 678899999999999999999 778999999999999998764211 011222233
Q ss_pred CCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCccc--ceeeecCCCCCC-CeEEEEEcc--CCCEEEEEecCCcEEEE
Q 001178 962 GKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMEC--IRQWVPQDVLSS-PISSAAYSC--NSQLIYATFTDGSIGVF 1036 (1131)
Q Consensus 962 ~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~-~v~~i~~s~--dg~~l~s~~~dg~i~vw 1036 (1131)
..+...+.+++|++++.+++++.|+.|++|+..+++. .... ...|.. .|++++|+| ++++|++|+.||.|++|
T Consensus 247 ~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~--~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W 324 (330)
T 2hes_X 247 DVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKR--ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFW 324 (330)
T ss_dssp SCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEE--SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEE
T ss_pred cccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecc--ccccccceEEEEEEecCCCceEEEEecCCCcEEEE
Confidence 3345789999999887555556799999999987642 2222 122355 899999999 78999999999999999
Q ss_pred ECCC
Q 001178 1037 DADS 1040 (1131)
Q Consensus 1037 d~~~ 1040 (1131)
++++
T Consensus 325 ~~~~ 328 (330)
T 2hes_X 325 SLEK 328 (330)
T ss_dssp EC--
T ss_pred Eecc
Confidence 9864
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.6e-35 Score=340.56 Aligned_cols=283 Identities=16% Similarity=0.163 Sum_probs=238.4
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
+.+++++|+|+|++ |++|+.||.|++||+.+++... .+..| ..+...+|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence 34568999999996 8899999999999999877654 23344 445566889999999999
Q ss_pred eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeec
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPH 506 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~ 506 (1131)
+.|+.|++||+.+++... .+.+|.+.|++++|+|+++ +|++|+.|+.|++|| .+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999876433 4578999999999999999 899999999999999 7888999999999999999997
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCceeEEecC---CCceEEEE---------------------EEccCCCEEEEEeec
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA---PGLWCTTM---------------------LYSADGSRLFSCGTS 562 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~---------------------~~s~~g~~l~~~~~~ 562 (1131)
+ ++.+|++++.||.|++||+++++....+.. +...+.++ +|+|+++++++++.
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV- 267 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-
Confidence 5 568999999999999999999888777764 33344444 45788999999986
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCCCeE-EEEEeccCCCCCcceEEE
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVNM-LTSTEAEGGLPSLPRLRF 640 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~v~~ 640 (1131)
++.|++||+++++.+..+...+...+.+++|+|++. +|++++.||.|++||+.+++. +..+..+. ...+.++.+
T Consensus 268 ---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~ 343 (420)
T 3vl1_A 268 ---SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVYF 343 (420)
T ss_dssp ---TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEEE
T ss_pred ---CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEEe
Confidence 899999999999988888766666899999999998 999999999999999998754 56665532 236777755
Q ss_pred cCCCCEEEEEECCCcEEEEecCCC
Q 001178 641 NKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 641 sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+++++|++++.|+.|++|++...
T Consensus 344 -~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 -AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp -ETTEEEEEETTTEEEEEEEECCT
T ss_pred -CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
No 48
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-35 Score=340.77 Aligned_cols=347 Identities=9% Similarity=0.082 Sum_probs=263.3
Q ss_pred ccCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEecC---CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcE
Q 001178 405 VKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQG---SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 405 ~~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~---~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 480 (1131)
..+|.+.|++++|+| ++++||+|+.||+|++||+.+ +........+ +|...|++++|+|+++ +|++|+.|+.|
T Consensus 59 ~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i 135 (437)
T 3gre_A 59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQI 135 (437)
T ss_dssp CTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEE
Confidence 379999999999999 999999999999999999987 5433323233 5999999999999999 89999999999
Q ss_pred EEEeC----CCceeEEecC------------CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC--CCc
Q 001178 481 RVWDL----SGRKLFQFEG------------HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--PGL 542 (1131)
Q Consensus 481 ~iwd~----~~~~~~~~~~------------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~ 542 (1131)
++||. +++.+..+.+ +...+.++.+...+++.++++++.||.|++||+++.+....+.. |..
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence 99994 5555444332 45566666665667889999999999999999999998888887 678
Q ss_pred eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEe----CCCCEEEEEEcCCcEEEEEcC
Q 001178 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFD----TTRNRILAAGEDNQIKFWDMD 618 (1131)
Q Consensus 543 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~iwd~~ 618 (1131)
.|.+++|+|++++|++++. ++.|++||+++++.+..+...+...|.+++|+ +++.+|++++.||.|++||+.
T Consensus 216 ~v~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTT----RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp CEEEEEECTTSCEEEEEET----TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEcC----CCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 9999999999999999986 89999999999999998863333489999655 457799999999999999999
Q ss_pred CCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccc
Q 001178 619 NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1131)
Q Consensus 619 ~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1131)
+++.+..+..+.. .+..+.|+|+++.+ ...
T Consensus 292 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l--------------~~~---------------------------------- 321 (437)
T 3gre_A 292 KGHCQYAFINSDE--QPSMEHFLPIEKGL--------------EEL---------------------------------- 321 (437)
T ss_dssp TTEEEEEEESSSS--CCCGGGGSCBCSSG--------------GGC----------------------------------
T ss_pred CCcEEEEEEcCCC--CCccceeccccccc--------------ccc----------------------------------
Confidence 9988887765543 45555555543221 000
Q ss_pred cccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecC
Q 001178 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS 778 (1131)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 778 (1131)
T Consensus 322 -------------------------------------------------------------------------------- 321 (437)
T 3gre_A 322 -------------------------------------------------------------------------------- 321 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEE
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVS 857 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~ 857 (1131)
.+ ....|...|.+++|+ ++++|++++ |+.|+
T Consensus 322 -----------~~------------------------------------~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~ 353 (437)
T 3gre_A 322 -----------NF------------------------------------CGIRSLNALSTISVS-NDKILLTDEATSSIV 353 (437)
T ss_dssp -----------CC------------------------------------CCCCSGGGGCCEEEE-TTEEEEEEGGGTEEE
T ss_pred -----------ee------------------------------------cccccCCceEEEEEC-CceEEEecCCCCeEE
Confidence 00 000266778889999 778888888 89999
Q ss_pred EEECCCceeEEEEeCCCC---CeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccC--CCEE
Q 001178 858 LFNMMNFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN--LNIL 932 (1131)
Q Consensus 858 vwd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~d--g~~l 932 (1131)
+||+.+++....+.+|.. ......+++ ...+++.. |+............|.+.|++++|+++ +.+|
T Consensus 354 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l 424 (437)
T 3gre_A 354 MFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLL 424 (437)
T ss_dssp EEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEE
T ss_pred EEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEE
Confidence 999999999888887543 355556666 44444433 333344445666789999999999998 7799
Q ss_pred EEEeCCCcEEEEE
Q 001178 933 VSSGSDAQLIFWN 945 (1131)
Q Consensus 933 ~s~~~Dg~v~lwd 945 (1131)
++++.||.|++|+
T Consensus 425 ~s~~~dG~I~iw~ 437 (437)
T 3gre_A 425 VACDNSGLIGIFQ 437 (437)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEcCCceEEEeC
Confidence 9999999999995
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.6e-34 Score=335.16 Aligned_cols=344 Identities=11% Similarity=0.101 Sum_probs=280.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCc
Q 001178 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR 488 (1131)
Q Consensus 410 ~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~ 488 (1131)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++|| .+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345579999999999999999999999998876543 34445 4455557899999 899999999999999 7777
Q ss_pred eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCce
Q 001178 489 KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 489 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 568 (1131)
....+.+|...|.+++|++ ++.+|++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 7777889999999999976 5579999999999999999999988899999999999999999999999986 899
Q ss_pred EEEEeCCCCeeeEEEecc--cCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCE
Q 001178 569 LVEWNESEGALKRTYIGF--RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~ 646 (1131)
|++||+++++.+..+..+ +...+.++++.+.+... ....+...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------------------~~~~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ-----------------------LHEISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS-----------------------CGGGCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce-----------------------eeecccCcccceEEcCCCCE
Confidence 999999999999988764 23367777776654321 01112236899999999999
Q ss_pred EEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCcccc
Q 001178 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAAR 726 (1131)
Q Consensus 647 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 726 (1131)
+++++.||.|++||+.++...
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~----------------------------------------------------------- 282 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQT----------------------------------------------------------- 282 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEE-----------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCcee-----------------------------------------------------------
Confidence 999999999999998654100
Q ss_pred CCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCc
Q 001178 727 GIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGK 806 (1131)
Q Consensus 727 ~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 806 (1131)
..
T Consensus 283 --------------------------------------------------------~~---------------------- 284 (420)
T 3vl1_A 283 --------------------------------------------------------IQ---------------------- 284 (420)
T ss_dssp --------------------------------------------------------EE----------------------
T ss_pred --------------------------------------------------------EE----------------------
Confidence 00
Q ss_pred cceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCC-EEEEEe-CCeEEEEECCCcee-EEEEeC-CCCCeeEEEE
Q 001178 807 ATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS-YVMSAG-GGKVSLFNMMNFKV-MTTFMS-PPPASTFLAF 882 (1131)
Q Consensus 807 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~la~~~-dg~i~vwd~~~~~~-~~~~~~-~~~~i~~l~~ 882 (1131)
+...|...|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...|.++.+
T Consensus 285 ---------------------~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 343 (420)
T 3vl1_A 285 ---------------------LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF 343 (420)
T ss_dssp ---------------------ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE
T ss_pred ---------------------cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe
Confidence 0013677889999999998 888888 89999999998754 666665 6677888855
Q ss_pred eCCCCcEEEEEeCCCcEEEEEeecc---------eeEEeecccccCeeEEEEccCCC---EEEEEeCCCcEEEEEcCC
Q 001178 883 HPQDNNIIAIGMEDSTIQIYNVRVD---------EVKTKLKGHQKHITGLAFSTNLN---ILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 883 s~~~~~~la~g~~dg~I~iwd~~~~---------~~~~~~~~h~~~V~~l~~s~dg~---~l~s~~~Dg~v~lwd~~~ 948 (1131)
+ ++.+|++++.||.|++|++... .....+.+|.+.|.+++|+|++. .|++++.+|.+.+|+++.
T Consensus 344 -~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 344 -A-AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp -E-TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred -C-CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 4 5789999999999999998763 22334668899999999999999 788888999999999864
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-35 Score=344.46 Aligned_cols=275 Identities=9% Similarity=0.086 Sum_probs=211.6
Q ss_pred CcccceeeeccCCCcEEEEEEecCC---------CcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceec
Q 001178 335 DLPRAVACTMHQGSSVVSMDFHPFH---------HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIV 405 (1131)
Q Consensus 335 ~~~~~~~~~~~h~~~V~~~~fspdg---------~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1131)
+.+.+...++.+.+.|++|+|+|++ + +||+|+.++. +
T Consensus 121 ~~~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~--------~------------------------- 166 (524)
T 2j04_B 121 ANGKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYM--------D------------------------- 166 (524)
T ss_dssp SSCCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------------------------
T ss_pred CCCCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEeccc--------C-------------------------
Confidence 3355666677789999999999987 4 6888875531 0
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccce-eeeeecCcCCeeEEEEecC------CCceEEEEEcCCC
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQ-SLEIDAHVGGVNDLAFSYP------NKQLCIVTCGDDK 478 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~-~~~~~~h~~~V~~l~~s~d------~~~~~l~s~s~d~ 478 (1131)
-..+|+++.||+++.|++|+|||+.+++.... ...+.+|.+.|.+++|+|+ +. +|++++.|+
T Consensus 167 ---------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dg 235 (524)
T 2j04_B 167 ---------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEG 235 (524)
T ss_dssp ------------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTS
T ss_pred ---------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCC
Confidence 01368999999999999999999988764321 2346678899999999997 45 899999999
Q ss_pred cEEEEe-CCCce-----------eEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc-eeEEecCCCceEE
Q 001178 479 LIRVWD-LSGRK-----------LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGLWCT 545 (1131)
Q Consensus 479 ~i~iwd-~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~ 545 (1131)
+|+||| ..+.. ...+.+|...|.+++|++. ..|++|+.||+|++||+++.. ....+..|...|.
T Consensus 236 tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~ 312 (524)
T 2j04_B 236 TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL 312 (524)
T ss_dssp CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE
T ss_pred eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEE
Confidence 999999 44421 2467889999999999752 489999999999999998764 3446788999999
Q ss_pred EE--EEccCC-CEEEEEeecCCCCceEEEEeCCCCeeeEEEecccC-CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 546 TM--LYSADG-SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK-KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 546 ~~--~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
++ .|+|+| .+|++++. |++|++||+++++....+.+|.. ..+.+++|+|+++.+++++.|++|++||+.++.
T Consensus 313 sv~~~~s~~g~~~laS~S~----D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~ 388 (524)
T 2j04_B 313 SVSTAYSDFEDTVVSTVAV----DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF 388 (524)
T ss_dssp EEEEECCTTSCCEEEEEET----TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT
T ss_pred EEEEEcCCCCCeEEEEecc----CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc
Confidence 99 578888 89999987 99999999999888777776654 247889999999999999999999999999988
Q ss_pred EEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCC
Q 001178 622 MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
.+..+..|. ..|.+++|+|+|++|++|+.||+|++|+...
T Consensus 389 ~~~~l~gH~--~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 389 AVHPLVSRE--TTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp CCEEEEECS--SCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred cceeeecCC--CceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 877776654 4899999999999999999999999999643
No 51
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.6e-33 Score=315.90 Aligned_cols=246 Identities=22% Similarity=0.341 Sum_probs=207.6
Q ss_pred eccCCCCCEEEEEE-----cC-CCCEEEEEeCCCeEEEEEecCCCc----cceeeeeecCcCCeeEEEEecCCCceEEEE
Q 001178 404 IVKDSSISVSRVAW-----SP-DGNFIGVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVT 473 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~-----sp-dg~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s 473 (1131)
++.+|.+.|++++| ++ |+++||+|+.|++|++||+.+++. ......+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 68899999999999 77 999999999999999999976542 123346789999999999999999 8999
Q ss_pred EcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec---CCCceEEEEEE
Q 001178 474 CGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---APGLWCTTMLY 549 (1131)
Q Consensus 474 ~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~ 549 (1131)
|+.|++|++|| .+++.+..+.+|...|.+++|+| ++.+|++++.|+.|++||+... ...... .|...|.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeee
Confidence 99999999999 88899999999999999999965 5589999999999999999743 333322 56778999999
Q ss_pred ccCC----------CEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 550 SADG----------SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 550 s~~g----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
+|++ .++++++. ++.|++|| ..++....+.+|.. .+.+++|+|++++|++|+.||.|++||+..
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred ccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 9987 78999886 99999999 45677778888765 899999999999999999999999999944
Q ss_pred -CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 620 -VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 620 -~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
......+.. .+ .|.+++|+|++.+++++ .|+.|++|++.++
T Consensus 245 ~~~~~~~~~~-~~--~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 245 LTYPQREFDA-GS--TINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp CSSCSEEEEC-SS--CEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred CcccceeecC-CC--cEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 444444432 22 69999999999887755 5778999998765
No 52
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.9e-34 Score=327.08 Aligned_cols=294 Identities=15% Similarity=0.199 Sum_probs=244.0
Q ss_pred eeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 340 ~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
....+ +|...|++++|+|+|..+||+|+.||.|+|||+.+++..... ...+|...|.+++|+
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~~~ 127 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMKFN 127 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEEEE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEEeC
Confidence 33344 599999999999999337999999999999999987765310 134799999999999
Q ss_pred C-CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCc
Q 001178 419 P-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHE 497 (1131)
Q Consensus 419 p-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~ 497 (1131)
| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||.+++.+..+.+|.
T Consensus 128 ~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~h~ 204 (383)
T 3ei3_B 128 QFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGLDGHEIFKEKLHK 204 (383)
T ss_dssp TTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEETTSCEEEEEECSS
T ss_pred CCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEECCCCEEEEeccCC
Confidence 9 789999999999999999986 33433333345568899999999999 8999999999999998899999999999
Q ss_pred cCeEEEeecccCCcc-EEEEEecCCeEEEEeCCC----CceeEEecCCCceEEEEEEcc-CCCEEEEEeecCCCCceEEE
Q 001178 498 APVYSVCPHQKENIH-FIFSTAVDGKIKAWLYDN----VGSRVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~----~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~i 571 (1131)
..|.+++|++. +. ++++++.|+.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++.|++
T Consensus 205 ~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~i 277 (383)
T 3ei3_B 205 AKVTHAEFNPR--CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRV 277 (383)
T ss_dssp SCEEEEEECSS--CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEEE
T ss_pred CcEEEEEECCC--CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEEE
Confidence 99999999764 45 899999999999999987 3344444 5888999999999 9999999986 899999
Q ss_pred EeCCCCeeeEEEecccC----------------CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCc
Q 001178 572 WNESEGALKRTYIGFRK----------------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1131)
Q Consensus 572 wd~~~~~~~~~~~~~~~----------------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i 635 (1131)
||+.+++....+.++.. ..+..++|+|++.+ +++.||.|++||+.+++.+..+..+.+...+
T Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~ 355 (383)
T 3ei3_B 278 YSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGII 355 (383)
T ss_dssp EETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCC
T ss_pred EECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceE
Confidence 99999888777765431 23334566666665 6678999999999999999999876555577
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEecCC
Q 001178 636 PRLRFNKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 636 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
..++|+|++++|++++ |+.|++|++.+
T Consensus 356 ~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 356 SLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEEecCccEEEEec-CCcEEEEecCC
Confidence 8889999999999997 99999999864
No 53
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-33 Score=320.59 Aligned_cols=290 Identities=14% Similarity=0.295 Sum_probs=232.7
Q ss_pred CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC------------------ceEEEEEEccCCCEE
Q 001178 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG------------------LWCTTMLYSADGSRL 556 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~------------------~~v~~~~~s~~g~~l 556 (1131)
+|...|.+++|+| ++++|++++ ++.+++|++.++.....+..+. ..|.+++|+|+|++|
T Consensus 62 ~h~~~V~~v~fsp--dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECT--TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECC--CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 6999999999965 568898876 7899999999887776655432 248999999999999
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcc
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 636 (1131)
++++. ++.|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.|++|++||+.+++....+..+. .+.
T Consensus 139 ~s~~~----d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---~v~ 210 (393)
T 1erj_A 139 ATGAE----DRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---GVT 210 (393)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS---CEE
T ss_pred EEEcC----CCeEEEEECCCCcEEEEEccCCC-CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC---CcE
Confidence 99986 89999999999999999998766 89999999999999999999999999999999887776443 689
Q ss_pred eEEEcC-CCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcc
Q 001178 637 RLRFNK-EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPS 715 (1131)
Q Consensus 637 ~v~~sp-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~ 715 (1131)
+++|+| +++++++++.|+.|++||..++. ....+.. .
T Consensus 211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~-------------------------~---------------- 248 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDS-------------------------E---------------- 248 (393)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC-------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCc-EEEeecc-------------------------c----------------
Confidence 999999 89999999999999999986651 1000000 0
Q ss_pred ccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEe
Q 001178 716 TILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1131)
Q Consensus 716 ~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1131)
.....
T Consensus 249 --------------------------------------------~~~~~------------------------------- 253 (393)
T 1erj_A 249 --------------------------------------------NESGT------------------------------- 253 (393)
T ss_dssp ------------------------------------------------C-------------------------------
T ss_pred --------------------------------------------ccCCC-------------------------------
Confidence 00001
Q ss_pred ecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCC-----------
Q 001178 796 WNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMN----------- 863 (1131)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~----------- 863 (1131)
+|...|.+++|+|+|++|++++ |++|++||+.+
T Consensus 254 -----------------------------------~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 254 -----------------------------------GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp -----------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred -----------------------------------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 2444555555555555555555 45555555443
Q ss_pred -ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEcc------CCCEEEEEe
Q 001178 864 -FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFST------NLNILVSSG 936 (1131)
Q Consensus 864 -~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~------dg~~l~s~~ 936 (1131)
+.+...+.+|...|.+++|+| ++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++ ++++|++++
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred CCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 345667788999999999999 899999999999999999999999999999999999999986 688999999
Q ss_pred CCCcEEEEEcCC
Q 001178 937 SDAQLIFWNTDT 948 (1131)
Q Consensus 937 ~Dg~v~lwd~~~ 948 (1131)
.||+|++|++..
T Consensus 378 ~Dg~i~iW~~~~ 389 (393)
T 1erj_A 378 GDCKARIWKYKK 389 (393)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCCcEEECcccc
Confidence 999999999865
No 54
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=3.3e-32 Score=351.35 Aligned_cols=531 Identities=11% Similarity=0.042 Sum_probs=369.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC------CCcEE
Q 001178 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD------DKLIR 481 (1131)
Q Consensus 408 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~------d~~i~ 481 (1131)
+...+.+.+||| +.||.++. +.|.+|++.+++.. .+.+|...+.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456789999995 58888776 68999999887532 4778999999999999999 5666543 34799
Q ss_pred EEeCCCceeEEecCCccCe-------EEEeecccCCccEEEEEecC------CeEEEEeCCCCceeEEecCCCceEEEEE
Q 001178 482 VWDLSGRKLFQFEGHEAPV-------YSVCPHQKENIHFIFSTAVD------GKIKAWLYDNVGSRVDYDAPGLWCTTML 548 (1131)
Q Consensus 482 iwd~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1131)
+||..+.....+..|...+ ..++|+| ||+++++++.+ ..|..|++.++.... +..+ ....+.
T Consensus 84 ~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~--~~~~~~ 158 (1045)
T 1k32_A 84 FYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLG--PATHIL 158 (1045)
T ss_dssp EEETTTTEEEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSC--SCSEEE
T ss_pred EEECCCCCeEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEE-ecCC--Ccceee
Confidence 9996666688889998888 8999965 55677777754 357777776654432 2222 234567
Q ss_pred EccCCCEEEEEeecCC--------CCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC-
Q 001178 549 YSADGSRLFSCGTSKE--------GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN- 619 (1131)
Q Consensus 549 ~s~~g~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~- 619 (1131)
|+| | ++++++...+ ++....+|....+.....+.+|.. .+.++.|+++ ..+++++.++.+.+|.+..
T Consensus 159 ~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~-~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~ 234 (1045)
T 1k32_A 159 FAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST-HVSSPVIVGH-RIYFITDIDGFGQIYSTDLD 234 (1045)
T ss_dssp EET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS-CCEEEEEETT-EEEEEECTTSSCEEEEEETT
T ss_pred eCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC-cccceEEeCC-EEEEEEeccCceEEEEEeCC
Confidence 999 8 7777642111 122344443222233445555544 8899999988 5666777889999998653
Q ss_pred CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccc
Q 001178 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPV 699 (1131)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 699 (1131)
+.....+..+. .+...+|+|||+.++.+ .++.|.+|+.... . +..+..+..
T Consensus 235 g~~~~~l~~~~---~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~-l~~l~~~~~----------------------- 285 (1045)
T 1k32_A 235 GKDLRKHTSFT---DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-K-IEKIEIGDL----------------------- 285 (1045)
T ss_dssp SCSCEECCCCC---SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-C-EEECCCCCC-----------------------
T ss_pred CCcceEecCCC---CcceeeEcCCCCEEEEE-eCCEEEEecCCce-E-eeeeccCcc-----------------------
Confidence 33334443332 46778999999988887 4889999987322 1 101100000
Q ss_pred ccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEee-cC
Q 001178 700 LSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT-NS 778 (1131)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~ 778 (1131)
.....| ..+...+..++|+ |+
T Consensus 286 ---------------------------------------~~~~~~-------------------~~~~~~v~~~~~S~pd 307 (1045)
T 1k32_A 286 ---------------------------------------ESPEDR-------------------IISIPSKFAEDFSPLD 307 (1045)
T ss_dssp ---------------------------------------CBCCSE-------------------EEECGGGGEEEEEECG
T ss_pred ---------------------------------------cccccc-------------------cccccccceeeecCCC
Confidence 000000 0145678899999 99
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCC-CeeEEEecCCCCEEEEEe-CCeE
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAED-VVPCVALSKNDSYVMSAG-GGKV 856 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~i~~l~~s~dg~~la~~~-dg~i 856 (1131)
|+.+++++ ++.+.+|++.. +.... +. .+.. .+..++|+ ||+.|+.++ ++.+
T Consensus 308 G~~la~~~-~~~i~~~~~~~----------------------~~~~~--~~-~~~~~~~~~~~~s-dg~~l~~~s~~~~l 360 (1045)
T 1k32_A 308 GDLIAFVS-RGQAFIQDVSG----------------------TYVLK--VP-EPLRIRYVRRGGD-TKVAFIHGTREGDF 360 (1045)
T ss_dssp GGCEEEEE-TTEEEEECTTS----------------------SBEEE--CS-CCSCEEEEEECSS-SEEEEEEEETTEEE
T ss_pred CCEEEEEE-cCEEEEEcCCC----------------------CceEE--cc-CCCcceEEeeeEc-CCCeEEEEECCCce
Confidence 99998887 77787776533 22111 11 2455 78899999 999999988 5678
Q ss_pred E-EEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEE
Q 001178 857 S-LFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS 935 (1131)
Q Consensus 857 ~-vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~ 935 (1131)
. +|++.+++... +..+...+..++|+| ++++||+++.++.|++||+.+++....+.+|.+.+.+++|||||++|+++
T Consensus 361 ~~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~ 438 (1045)
T 1k32_A 361 LGIYDYRTGKAEK-FEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG 438 (1045)
T ss_dssp EEEEETTTCCEEE-CCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred EEEEECCCCCceE-ecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEE
Confidence 8 89998876554 347778899999999 89999999999999999999999888888899999999999999999988
Q ss_pred eCCC----------cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCccc------
Q 001178 936 GSDA----------QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMEC------ 998 (1131)
Q Consensus 936 ~~Dg----------~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~------ 998 (1131)
+.++ .|++||+.+++.. .... +...+..++|+|||++|++.+ ++...+|+......
T Consensus 439 ~~~~~~~~~~~~~~~i~l~d~~~g~~~-----~l~~--~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 511 (1045)
T 1k32_A 439 FPLKHGETDGYVMQAIHVYDMEGRKIF-----AATT--ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVS 511 (1045)
T ss_dssp EEECSSTTCSCCEEEEEEEETTTTEEE-----ECSC--SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCB
T ss_pred ecCccccccCCCCCeEEEEECCCCcEE-----EeeC--CCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCc
Confidence 7654 8999999986521 1111 125677899999999988765 44455554322111
Q ss_pred ----------------------------------ceeeecCCCCCCCeEEEEEccCCCEEEE-------------EecCC
Q 001178 999 ----------------------------------IRQWVPQDVLSSPISSAAYSCNSQLIYA-------------TFTDG 1031 (1131)
Q Consensus 999 ----------------------------------~~~~~~~~~~~~~v~~i~~s~dg~~l~s-------------~~~dg 1031 (1131)
.........+...+..++|+|||+++++ .+.+.
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~ 591 (1045)
T 1k32_A 512 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 591 (1045)
T ss_dssp EEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCE
T ss_pred eeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCc
Confidence 0001111123578999999999998885 12345
Q ss_pred cEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1032 SIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1032 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
.|.+||+.+++...... .+..+.|+| |+..|++++.| .|++|++.+++
T Consensus 592 ~l~~~d~~~~~~~~l~~----------------~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 592 VLLKYDVKTRKVTEVKN----------------NLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEEETTTCCEEEEEE----------------EEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred eEEEEECCCCcEEEeec----------------CcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 78889998887532220 122578889 67889988877 79999998766
No 55
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=335.50 Aligned_cols=322 Identities=15% Similarity=0.206 Sum_probs=264.5
Q ss_pred cccCCCCCcccccCCCccc-ceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeeccccccc
Q 001178 320 ATYPVPSQQATWSLDDLPR-AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSM 398 (1131)
Q Consensus 320 ~~~s~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 398 (1131)
++++.++.+.+|....... .....+.|...|++++|+|+++ +|++|+.||.|+|||+.+......
T Consensus 39 ~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~------------- 104 (416)
T 2pm9_A 39 ANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANNAIN------------- 104 (416)
T ss_dssp SSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSS-CEEEEESSSCEEEECCSSTTSCCC-------------
T ss_pred cccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCC-eEEEEccCCeEEEeeccccccccc-------------
Confidence 4557778888888876543 3555677999999999999998 489999999999999987211100
Q ss_pred ceeceeccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCC------ccceeeeeecCcCCeeEEEEecCCCceEE
Q 001178 399 MLQAAIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSN------DLCQSLEIDAHVGGVNDLAFSYPNKQLCI 471 (1131)
Q Consensus 399 ~~~~~~~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~~------~~~~~~~~~~h~~~V~~l~~s~d~~~~~l 471 (1131)
....+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++ .......+.+|...|.+++|+|++.. ++
T Consensus 105 --~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l 181 (416)
T 2pm9_A 105 --SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAH-VF 181 (416)
T ss_dssp --EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTT-EE
T ss_pred --chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCc-EE
Confidence 01146789999999999998 8999999999999999999876 33322345689999999999999433 89
Q ss_pred EEEcCCCcEEEEe-CCCceeEEecCC------ccCeEEEeecccCCccEEEEEecCC---eEEEEeCCCC-ceeEEec-C
Q 001178 472 VTCGDDKLIRVWD-LSGRKLFQFEGH------EAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDNV-GSRVDYD-A 539 (1131)
Q Consensus 472 ~s~s~d~~i~iwd-~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~l~s~s~dg---~i~~wd~~~~-~~~~~~~-~ 539 (1131)
++++.|+.|++|| .+++.+..+..| ...|.+++|++.. ..++++++.|+ .|++||+++. .....+. .
T Consensus 182 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~ 260 (416)
T 2pm9_A 182 ASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN-STRVATATGSDNDPSILIWDLRNANTPLQTLNQG 260 (416)
T ss_dssp EEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC-TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC
T ss_pred EEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC-CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC
Confidence 9999999999999 778888888776 7899999997643 26899999999 9999999986 4555666 7
Q ss_pred CCceEEEEEEcc-CCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEc
Q 001178 540 PGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 540 ~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~ 617 (1131)
|...|.+++|+| ++++|++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++ .++++++.||.|++|++
T Consensus 261 ~~~~v~~~~~s~~~~~~l~s~~~----dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 261 HQKGILSLDWCHQDEHLLLSSGR----DNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp CSSCEEEEEECSSCSSCEEEEES----SSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred ccCceeEEEeCCCCCCeEEEEeC----CCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 888999999999 9999999986 89999999999999999998765 89999999999 89999999999999999
Q ss_pred CCCeEEEEEec--------------------c-------------CCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 618 DNVNMLTSTEA--------------------E-------------GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 618 ~~~~~~~~~~~--------------------~-------------~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.++........ + .+...+.+++|+|+|++|++++.|+.|+||++.+.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 336 QNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 87653221100 0 03446779999999999999999999999998764
No 56
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.7e-33 Score=320.93 Aligned_cols=297 Identities=14% Similarity=0.166 Sum_probs=250.5
Q ss_pred eec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 342 CTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 342 ~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
..+ +|.+.|++++|+| + +|++|+.||.|+|||+.+++...... ....+.+|...|.+++|+|+
T Consensus 10 ~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~~ 73 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDVLQA 73 (397)
T ss_dssp EESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEEecc
Confidence 344 4999999999999 4 69999999999999999887221100 01146689999999999999
Q ss_pred ----C---CEEEEEeCCCeEEEEEecCCCccc--eeeeeecC-----cCCeeEEEEe----cCCCceE-EEEEcCCCcEE
Q 001178 421 ----G---NFIGVAFTKHLIHLYTYQGSNDLC--QSLEIDAH-----VGGVNDLAFS----YPNKQLC-IVTCGDDKLIR 481 (1131)
Q Consensus 421 ----g---~~las~~~d~~i~vwd~~~~~~~~--~~~~~~~h-----~~~V~~l~~s----~d~~~~~-l~s~s~d~~i~ 481 (1131)
| ++|++++.|+.|++||+.+++... ....+.+| ...|.+++|+ |+++ + |++++.|+.|+
T Consensus 74 ~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i~ 151 (397)
T 1sq9_A 74 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTTY 151 (397)
T ss_dssp EETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCEE
T ss_pred cccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcEE
Confidence 9 999999999999999999877510 02356778 5899999999 9999 7 99999999999
Q ss_pred EEe-CC------CceeE-----Ee-------cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC---
Q 001178 482 VWD-LS------GRKLF-----QF-------EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--- 539 (1131)
Q Consensus 482 iwd-~~------~~~~~-----~~-------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--- 539 (1131)
+|| .. ++.+. .+ ..|...|.+++|++ ++ ++++++.||.|++||+++......+..
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 228 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHS 228 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEecccc
Confidence 999 55 56665 66 44889999999965 55 999999999999999999888888888
Q ss_pred C---CceEEEEEEccCCCEEEEEeecCCCC---ceEEEEeCCCCeeeEEEec-------------ccCCceEEEEEeCCC
Q 001178 540 P---GLWCTTMLYSADGSRLFSCGTSKEGD---SHLVEWNESEGALKRTYIG-------------FRKKSAGVVQFDTTR 600 (1131)
Q Consensus 540 ~---~~~v~~~~~s~~g~~l~~~~~~~~~~---~~i~iwd~~~~~~~~~~~~-------------~~~~~v~~~~~s~~~ 600 (1131)
| ...|.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |.. .+.+++|+|++
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~ 303 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSG 303 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSSS
T ss_pred ccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEECCCC
Confidence 7 889999999999999999986 7 8999999999999999887 554 89999999999
Q ss_pred CEEEEEEcCCcEEEEEcCCCeEEEEEe------cc-------------CCCCCcceEEEcCCC----------CEEEEEE
Q 001178 601 NRILAAGEDNQIKFWDMDNVNMLTSTE------AE-------------GGLPSLPRLRFNKEG----------NLLVVTT 651 (1131)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~i~~v~~sp~~----------~~l~~~~ 651 (1131)
++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|++++
T Consensus 304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~ 383 (397)
T 1sq9_A 304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC 383 (397)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec
Confidence 999999999999999999999999888 43 014489999999998 7999999
Q ss_pred CCCcEEEEecCCC
Q 001178 652 ADQGIKILANADG 664 (1131)
Q Consensus 652 ~dg~i~iw~~~~~ 664 (1131)
.||.|++|++.++
T Consensus 384 ~dg~i~iw~~~~g 396 (397)
T 1sq9_A 384 LDRSIRWFREAGG 396 (397)
T ss_dssp TTTEEEEEEEEC-
T ss_pred CCCcEEEEEcCCC
Confidence 9999999999775
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-35 Score=342.07 Aligned_cols=343 Identities=10% Similarity=0.084 Sum_probs=232.2
Q ss_pred CCCCEEEEEEcCCC---------CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC
Q 001178 408 SSISVSRVAWSPDG---------NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1131)
Q Consensus 408 h~~~V~~~~~spdg---------~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 478 (1131)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ ++++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 56789999999987 799999866420 01368888 799999999
Q ss_pred cEEEEe-CCCcee----EEecCCccCeEEEeeccc----CCccEEEEEecCCeEEEEeCCCCce-----------eEEec
Q 001178 479 LIRVWD-LSGRKL----FQFEGHEAPVYSVCPHQK----ENIHFIFSTAVDGKIKAWLYDNVGS-----------RVDYD 538 (1131)
Q Consensus 479 ~i~iwd-~~~~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~ 538 (1131)
+|+||| ..++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 999999 555432 346678899999999986 3467999999999999999976532 23567
Q ss_pred CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe-eeEEEecccCCceEEE--EEeCCC-CEEEEEEcCCcEEE
Q 001178 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVV--QFDTTR-NRILAAGEDNQIKF 614 (1131)
Q Consensus 539 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~--~~s~~~-~~l~~~~~dg~i~i 614 (1131)
.|...|.+++|++++ .|++++. |+.|++||++++. +...+.+|.. .|.++ +|++++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788899999999864 7888886 9999999998764 4556777665 89988 578887 89999999999999
Q ss_pred EEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCcccee
Q 001178 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVT 694 (1131)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1131)
||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++. ....+
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-~~~~l----------------------- 393 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-AVHPL----------------------- 393 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-CCEEE-----------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-cceee-----------------------
Confidence 999988766666554432357899999999999999999999999976541 00000
Q ss_pred cccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEE
Q 001178 695 TITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLL 774 (1131)
Q Consensus 695 ~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 774 (1131)
.
T Consensus 394 ---------------------------------------------------------------------~---------- 394 (524)
T 2j04_B 394 ---------------------------------------------------------------------V---------- 394 (524)
T ss_dssp ---------------------------------------------------------------------E----------
T ss_pred ---------------------------------------------------------------------e----------
Confidence 0
Q ss_pred eecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-C
Q 001178 775 YTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-G 853 (1131)
Q Consensus 775 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-d 853 (1131)
+|...|.+++|+|+|++|++|+ |
T Consensus 395 --------------------------------------------------------gH~~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 395 --------------------------------------------------------SRETTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp --------------------------------------------------------ECSSCEEEEECCSSCCBCEEEETT
T ss_pred --------------------------------------------------------cCCCceEEEEeCCCCCeEEEEECC
Confidence 2455555666666666666655 5
Q ss_pred CeEEEEECCCceeEEEEe-----CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEee-cceeEEeecccccCeeEEEEcc
Q 001178 854 GKVSLFNMMNFKVMTTFM-----SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-VDEVKTKLKGHQKHITGLAFST 927 (1131)
Q Consensus 854 g~i~vwd~~~~~~~~~~~-----~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~-~~~~~~~~~~h~~~V~~l~~s~ 927 (1131)
++|++||+... .+.... .+...+.+++|+| ++..+. ... .+.+|+.. ++.++..+.+|.+.|.+|+|+|
T Consensus 419 gtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 419 GSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-KDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp TEEECCBSCSS-TTTCC------CCCCEEEECBCCS-SSCEEE-ECC--CCCCCC-------------CCCSCCCEEECC
T ss_pred CEEEEEechHh-hccccccCccceeeeEEEEeccCC-CCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCC
Confidence 66666665432 111111 0112466889999 666442 222 33344433 5677888999999999999999
Q ss_pred CCC---EEEEEeCCCcEEEEEcCC
Q 001178 928 NLN---ILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 928 dg~---~l~s~~~Dg~v~lwd~~~ 948 (1131)
++. +||+|+.||.|+||++..
T Consensus 494 ~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 494 TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCCccHHHHhhccCceEEEEEccc
Confidence 964 999999999999999876
No 58
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.6e-34 Score=333.85 Aligned_cols=293 Identities=18% Similarity=0.260 Sum_probs=236.9
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~ 423 (1131)
.|...|+|++|+|.+..+||+|+.||+|+|||+.+++.... ..+.+|.+.|++|+|+| |+.+
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH~~~V~~l~f~p~~~~~ 179 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGAGGSITGLKFNPLNTNQ 179 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSSSCCCCEEEECSSCTTE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCCCCCEEEEEEeCCCCCE
Confidence 48899999999996555799999999999999988764321 12568999999999998 7899
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~ 503 (1131)
|++|+.||+|++||++++. .........+...+.+++|+|+++ +|++|+.|+.|++||.+++.+..+.+|...|.++
T Consensus 180 l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 180 FYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV 256 (435)
T ss_dssp EEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEE
T ss_pred EEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccCcceeEEEecccceEEee
Confidence 9999999999999998753 222222233455789999999999 8999999999999998888999999999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeE---EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
+|+|..+ .++++++.|+.|++||+++..... ....|...|++++|+|+|++|++++. |+.|++||+.++...
T Consensus 257 ~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 257 ALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDCP 331 (435)
T ss_dssp EECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSSE
T ss_pred eecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCccc
Confidence 9987543 588899999999999998766443 33467789999999999999999987 999999999999888
Q ss_pred EEEecccCC-----ceEEEEEeCCCCEEEEEE------------cCCcEEEEEcCCCeEEEEEeccCCCCCcceE-EEcC
Q 001178 581 RTYIGFRKK-----SAGVVQFDTTRNRILAAG------------EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL-RFNK 642 (1131)
Q Consensus 581 ~~~~~~~~~-----~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v-~~sp 642 (1131)
..+..|... ......|+|++..+++++ .++.|++||..+++.+..+..+ +...|.++ +|+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~-~~~~v~s~~~fsp 410 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP-ESSGISSLNEFNP 410 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS-SCCCCCCEEEECT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC-CCCcEEEEEEECC
Confidence 777665431 122356777777666654 3467999999999988877543 33367777 6999
Q ss_pred CCCEEEEEECCCcEEEEecCCC
Q 001178 643 EGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|.+|++|+ |+.|+||++.++
T Consensus 411 dg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC--
T ss_pred CCCEEEEEc-CCcEEEEECCcC
Confidence 999998875 789999999877
No 59
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-33 Score=314.18 Aligned_cols=286 Identities=13% Similarity=0.126 Sum_probs=252.5
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
..+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+. .+.+|...|.+++|+|+++
T Consensus 28 l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~ 87 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLG-------------------TLDGHTGTIWSIDVDCFTK 87 (369)
T ss_dssp EECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTSS
T ss_pred EEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhh-------------------hhhhcCCcEEEEEEcCCCC
Confidence 346999999999999998 59999999999999999887664 4678999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC-----CcEEEEe-CCCc--------
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-----KLIRVWD-LSGR-------- 488 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d-----~~i~iwd-~~~~-------- 488 (1131)
+|++++.|+.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++|| ..+.
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 99999999999999999987554 334 888999999999999 78999888 9999999 3332
Q ss_pred ---eeEEecCCcc--CeEEEeecccCCccEEEEEecCCeEEEEeCCC-CceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 489 ---KLFQFEGHEA--PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 489 ---~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.+..+..|.. .+.+++|++ ++.++++++.||.|++||+++ ......+..+...|.+++|+|++++|++++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 238 (369)
T 3zwl_B 162 SEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR- 238 (369)
T ss_dssp CSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred ccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC-
Confidence 3445556666 899999965 557999999999999999998 6677788888999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCC--------------cEEEEEcCCCeEEEEEec
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN--------------QIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~ 628 (1131)
++.|++||+.+++.+..+. ....+..++|+|+++++++++.++ .+++||..+++.+..+..
T Consensus 239 ---d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 313 (369)
T 3zwl_B 239 ---DTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG 313 (369)
T ss_dssp ---TSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC
T ss_pred ---CceEEEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec
Confidence 8999999999999988887 344799999999999999999888 899999999999988876
Q ss_pred cCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 629 EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 629 ~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+.. .|.+++|+|++++|++++.||.|++|++..+
T Consensus 314 ~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 314 HFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 654 8999999999999999999999999999765
No 60
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-33 Score=306.49 Aligned_cols=287 Identities=17% Similarity=0.273 Sum_probs=249.7
Q ss_pred ceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 339 AVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 339 ~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
++.+++ +|.+.|++++| |+++ +|++|+.||.|+|||+.+++... .+..|...|.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~ 67 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCY 67 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEE
Confidence 344555 49999999999 9898 59999999999999998876554 46688999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCc
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHE 497 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~ 497 (1131)
+|++++|++++.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|.
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d-~~~~~~~~~~~~ 142 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK-EGSLVYNLQAHN 142 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE-TTEEEEEEECCS
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc-CCcEEEecccCC
Confidence 999999999999999999999876544455578899999999999 456 799999999999999 778888999999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC-CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
..+.++++.+. ++..+++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+++
T Consensus 143 ~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~ 214 (313)
T 3odt_A 143 ASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHT 214 (313)
T ss_dssp SCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTT
T ss_pred CceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCc
Confidence 99999999762 457999999999999999 3445555555 778999999999998 777775 89999999999
Q ss_pred CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001178 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1131)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i 656 (1131)
++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|+|+++ +++++.||.|
T Consensus 215 ~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 215 GDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp CCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETTSCE
T ss_pred hhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCCCcE
Confidence 999999988765 89999999998 699999999999999999999988877654 799999999998 6679999999
Q ss_pred EEEecCCC
Q 001178 657 KILANADG 664 (1131)
Q Consensus 657 ~iw~~~~~ 664 (1131)
++|++.++
T Consensus 290 ~iw~~~~~ 297 (313)
T 3odt_A 290 RIFSQEKS 297 (313)
T ss_dssp EEEESCGG
T ss_pred EEEeCCCC
Confidence 99999766
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.2e-32 Score=316.88 Aligned_cols=274 Identities=19% Similarity=0.301 Sum_probs=239.9
Q ss_pred cCCCcE-EEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 345 HQGSSV-VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 345 ~h~~~V-~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
+|.+.| +| ++++|+ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +.+
T Consensus 116 ~h~~~v~~~--~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~--~~~ 171 (445)
T 2ovr_B 116 GHDDHVITC--LQFCGN-RIVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMR--DNI 171 (445)
T ss_dssp CSTTSCEEE--EEEETT-EEEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEE--TTE
T ss_pred ccCCCcEEE--EEEcCC-EEEEEECCCcEEEEECCCCcEEE-------------------EEcCCCCCEEEEEec--CCE
Confidence 487765 55 555676 59999999999999999988765 467999999999998 679
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 502 (1131)
|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++|| .+++.+..+.+|...|.+
T Consensus 172 l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 244 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 244 (445)
T ss_dssp EEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE
T ss_pred EEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEE
Confidence 9999999999999999986543 678999999999996 44 799999999999999 888999999999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEE
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 582 (1131)
+++ ++.++++++.||.|++||+++......+..|...|.++.| ++.++++++. ++.|++||+++++.+..
T Consensus 245 ~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 245 VQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETGNCIHT 314 (445)
T ss_dssp EEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred EEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCCCEEEE
Confidence 988 4578999999999999999999888899999999999999 8899999986 89999999999999999
Q ss_pred EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc-CCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-GGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
+.+|.. .+.++.+ +++++++++.||.|++||+.+++.+..+..+ .+...|.+++|+ ++++++++.||.|++||+
T Consensus 315 ~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 315 LTGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ECCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred EcCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 988765 6777766 4679999999999999999999998888753 244578999996 579999999999999998
Q ss_pred CCC
Q 001178 662 ADG 664 (1131)
Q Consensus 662 ~~~ 664 (1131)
.++
T Consensus 390 ~~~ 392 (445)
T 2ovr_B 390 KTG 392 (445)
T ss_dssp TTC
T ss_pred CCC
Confidence 776
No 62
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-32 Score=308.76 Aligned_cols=299 Identities=20% Similarity=0.312 Sum_probs=245.4
Q ss_pred eccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCCcc--ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcE
Q 001178 404 IVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSNDL--CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 480 (1131)
+++||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence 58899999999999997 689999999999999999876542 23446789999999999999999 89999999999
Q ss_pred EEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE-EecCCCceEEEEEEccCC--CEE
Q 001178 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADG--SRL 556 (1131)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g--~~l 556 (1131)
++|+ ..+........+...+....+.+ ++.+|++++.|+.+++||........ ....+...+..++|++++ .++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred eEEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 9999 77777777778888888888754 45789999999999999987655443 445677889999999875 456
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcc
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 636 (1131)
++++. ++.|++||.++++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+.+.+.+..+..+. .+.
T Consensus 189 ~s~~~----d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~ 260 (340)
T 4aow_A 189 VSCGW----DKLVKVWNLANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---IIN 260 (340)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS---CEE
T ss_pred EEEcC----CCEEEEEECCCCceeeEecCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc---eEE
Confidence 67765 88999999999999999998766 89999999999999999999999999999999988887553 689
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccc
Q 001178 637 RLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPST 716 (1131)
Q Consensus 637 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~ 716 (1131)
++.|+|++.++ +++.|+.|++||+.++. ....+....
T Consensus 261 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~~-~~~~~~~~~----------------------------------------- 297 (340)
T 4aow_A 261 ALCFSPNRYWL-CAATGPSIKIWDLEGKI-IVDELKQEV----------------------------------------- 297 (340)
T ss_dssp EEEECSSSSEE-EEEETTEEEEEETTTTE-EEEEECCC------------------------------------------
T ss_pred eeecCCCCcee-eccCCCEEEEEECCCCe-EEEeccccc-----------------------------------------
Confidence 99999987655 56679999999987652 111110000
Q ss_pred cccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEee
Q 001178 717 ILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKW 796 (1131)
Q Consensus 717 ~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 796 (1131)
... ....|...|.+++|+|+|++|++++.||.|++|++
T Consensus 298 ---------------------------------------~~~---~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 298 ---------------------------------------IST---SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp ------------------------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ---------------------------------------eee---eccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 000 00237889999999999999999999999999998
Q ss_pred cCC
Q 001178 797 NRT 799 (1131)
Q Consensus 797 ~~~ 799 (1131)
.++
T Consensus 336 ~tG 338 (340)
T 4aow_A 336 TIG 338 (340)
T ss_dssp EC-
T ss_pred CCc
Confidence 765
No 63
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.9e-32 Score=320.42 Aligned_cols=278 Identities=18% Similarity=0.261 Sum_probs=241.1
Q ss_pred ccCCCcE-EEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 344 MHQGSSV-VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 344 ~~h~~~V-~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
.+|...| .|+.|+ ++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|++
T Consensus 118 ~~h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~-------------------~~~~h~~~V~~l~~~~~~- 174 (464)
T 3v7d_B 118 RGHMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLL-------------------QLSGHDGGVWALKYAHGG- 174 (464)
T ss_dssp ECCSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEE-------------------EECCCSSCEEEEEECSTT-
T ss_pred cCCCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEE-------------------EEeCCCcCEEEEEEcCCC-
Confidence 3577774 666664 45 69999999999999999988665 467999999999999998
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEec--CCCceEEEEEcCCCcEEEEe-CCCc-----------
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY--PNKQLCIVTCGDDKLIRVWD-LSGR----------- 488 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~--d~~~~~l~s~s~d~~i~iwd-~~~~----------- 488 (1131)
+|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++|+.|++|++|| .++.
T Consensus 175 ~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 249 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------CCS
T ss_pred EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccccCCc
Confidence 99999999999999999987543 6789999999999995 555 899999999999999 4443
Q ss_pred ------------eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEE
Q 001178 489 ------------KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 489 ------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 556 (1131)
.+..+.+|...|.++. +++.++++++.||.|++||+++.+....+..|...|.+++|+|+++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 250 PLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp SEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred ceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEE
Confidence 2556788999999884 345799999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcc
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 636 (1131)
++++. ++.|++||+.+++.+..+.+|.. .+.+++|+ ++++++++.||.|++||+.++......... ..+.
T Consensus 326 ~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~---~~~~ 395 (464)
T 3v7d_B 326 ISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT---NLSA 395 (464)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT---TCCC
T ss_pred EEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC---CCcc
Confidence 99986 89999999999999999998766 89999997 589999999999999999998776665422 2578
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 637 RLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 637 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.++|++++.++++++ ||.|++||+.++
T Consensus 396 ~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 396 ITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred EEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 889999999999998 899999999876
No 64
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.5e-32 Score=316.57 Aligned_cols=316 Identities=19% Similarity=0.332 Sum_probs=271.6
Q ss_pred eeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEe
Q 001178 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWL 527 (1131)
Q Consensus 449 ~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd 527 (1131)
.+.+|.+.|.. +++++++ ++++|+.|++|++|| .+++.+..+.+|...|.+++|+ +.++++++.||.|++||
T Consensus 113 ~l~~h~~~v~~-~~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp EEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCEEEEE
T ss_pred EecccCCCcEE-EEEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeEEEEE
Confidence 57889887533 3555677 899999999999999 8899999999999999999985 36999999999999999
Q ss_pred CCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE
Q 001178 528 YDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 607 (1131)
+.+++....+..|...|.++.++ ++.+++++. ++.|++||+.+++.+..+.+|.. .+.++++ +++++++++
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEc
Confidence 99999988999999999999995 577999886 89999999999999999988765 8888888 778999999
Q ss_pred cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccc
Q 001178 608 EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKV 687 (1131)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1131)
.||.|++||+.+++.+..+..+.. .|.++.| ++.++++++.||.|++||+.++. ....
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~----------------- 314 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHTN--RVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHT----------------- 314 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSS--CEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEE-----------------
T ss_pred CCCEEEEEECCCCcEeEEecCCCC--ceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEE-----------------
Confidence 999999999999999888875544 7899998 78899999999999999986541 0000
Q ss_pred cCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCc
Q 001178 688 PGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSA 767 (1131)
Q Consensus 688 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 767 (1131)
T Consensus 315 -------------------------------------------------------------------------------- 314 (445)
T 2ovr_B 315 -------------------------------------------------------------------------------- 314 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCE
Q 001178 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1131)
+ .+|...+.++.+ ++++
T Consensus 315 --------------------------~-----------------------------------~~~~~~v~~~~~--~~~~ 331 (445)
T 2ovr_B 315 --------------------------L-----------------------------------TGHQSLTSGMEL--KDNI 331 (445)
T ss_dssp --------------------------E-----------------------------------CCCCSCEEEEEE--ETTE
T ss_pred --------------------------E-----------------------------------cCCcccEEEEEE--eCCE
Confidence 0 024445555555 5678
Q ss_pred EEEEe-CCeEEEEECCCceeEEEEeC---CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEee-----ccccc
Q 001178 848 VMSAG-GGKVSLFNMMNFKVMTTFMS---PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL-----KGHQK 918 (1131)
Q Consensus 848 la~~~-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~-----~~h~~ 918 (1131)
+++++ ||.|++||+.+++.+..+.. |...|.+++|+ +.+|++|+.||.|++||+.+++.+..+ .+|.+
T Consensus 332 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 408 (445)
T 2ovr_B 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 408 (445)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc
Confidence 88888 89999999999999999886 78889999995 469999999999999999999988887 57899
Q ss_pred CeeEEEEccCCCEEEEEeCCCc----EEEEEcCC
Q 001178 919 HITGLAFSTNLNILVSSGSDAQ----LIFWNTDT 948 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~----v~lwd~~~ 948 (1131)
.|++++|+|++.+|++++.||+ |.+||++.
T Consensus 409 ~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 409 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred eEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999999999999999999998 99999876
No 65
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=315.54 Aligned_cols=289 Identities=12% Similarity=0.207 Sum_probs=239.8
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcC---CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC-
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCG---DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD- 420 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd- 420 (1131)
+|...|++++|+|++.+++++|+. ||.|+|||+.+++.... ...+|...|.+++|+|+
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~ 77 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCGTFGATS 77 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEEECTTCC
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEEEEcCCC
Confidence 399999999999999878888887 99999999998875431 23378999999999999
Q ss_pred --CCEEEEEeCCCeEEEEEecCCC-ccceeeeeecCcCCeeEEEE------ecCCCceEEEEEcCCCcEEEEe-CCCc-e
Q 001178 421 --GNFIGVAFTKHLIHLYTYQGSN-DLCQSLEIDAHVGGVNDLAF------SYPNKQLCIVTCGDDKLIRVWD-LSGR-K 489 (1131)
Q Consensus 421 --g~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~h~~~V~~l~~------s~d~~~~~l~s~s~d~~i~iwd-~~~~-~ 489 (1131)
|++|++|+.||.|++||+.+++ .+ ..+.+|...|.+++| +|+++ +|++++.|+.|++|| .+++ .
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPEMPV---YSVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCSSCS---EEECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSC
T ss_pred CCCceEEEecCCCeEEEEeCCCCCccE---EEEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCc
Confidence 7999999999999999999876 33 367899999999954 67888 899999999999999 5555 6
Q ss_pred eEEecCCcc----CeEEEeecc--cCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc---CCCEEEEEe
Q 001178 490 LFQFEGHEA----PVYSVCPHQ--KENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA---DGSRLFSCG 560 (1131)
Q Consensus 490 ~~~~~~h~~----~v~~~~~~~--~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~~~ 560 (1131)
+..+..|.+ .+.+++|.+ ++++.++++++.||.|++||+++...... ..+...|.+++|+| ++.++++++
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~ 231 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATS 231 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEE
T ss_pred ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEEC
Confidence 777766555 788888432 45678999999999999999998776443 55677899999999 999999998
Q ss_pred ecCCCCceEEEEeCCCCeeeEEEe-----cccCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCCC--------------
Q 001178 561 TSKEGDSHLVEWNESEGALKRTYI-----GFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNV-------------- 620 (1131)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~-------------- 620 (1131)
. ++.|++||+++++....+. +|.. .+.+++|+|+++ ++++++.||.|++||+..+
T Consensus 232 ~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~ 306 (357)
T 3i2n_A 232 L----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG 306 (357)
T ss_dssp S----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred C----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc
Confidence 6 8999999998877665554 6544 899999999998 8999999999999999754
Q ss_pred -----eEEEEEeccCCCCCcceEEEcCCCCEEE-EEECCCcEEEEecCCC
Q 001178 621 -----NMLTSTEAEGGLPSLPRLRFNKEGNLLV-VTTADQGIKILANADG 664 (1131)
Q Consensus 621 -----~~~~~~~~~~~~~~i~~v~~sp~~~~l~-~~~~dg~i~iw~~~~~ 664 (1131)
+.+..+..+ ...|.+++|+|++++++ +++.||.|++|++.+.
T Consensus 307 ~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 307 VAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 344455544 44899999999999998 7999999999998765
No 66
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.7e-33 Score=315.64 Aligned_cols=292 Identities=15% Similarity=0.104 Sum_probs=244.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCc--ccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRE--RLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
|.++|++++|+|+|+ +|++|+.||.|+|||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 889999999999998 68999999999999998876 332 46689999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCce---e-EEecCCcc
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK---L-FQFEGHEA 498 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~---~-~~~~~h~~ 498 (1131)
|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|+++ +|++++.|+.|++|| ..+.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeee-eeEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 999999999999999887633 2334577999999999999999 899999999999999 54442 2 33467899
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCC------------------CCceeEEecCCCceEEEEEEccCCCEEEEEe
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD------------------NVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~------------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 560 (1131)
.|.+++|++ ++.++++++.||.|++||++ .......+..+...|.+++|+|++++|++++
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999976 55799999999999999954 4566667778888999999999999999998
Q ss_pred ecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC--CeEEEE-------------
Q 001178 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN--VNMLTS------------- 625 (1131)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~------------- 625 (1131)
. ++.|++||+.+++.+..+..+.. .+.+++|+|++.+++++ .|+.|++|++.+ ++....
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 6 89999999999999999988655 89999999999877777 999999999987 431100
Q ss_pred -----------------------Eec-cCCCCCcceEEEc-CCC---CEEEEEECCCcEEEEecCCCchhh
Q 001178 626 -----------------------TEA-EGGLPSLPRLRFN-KEG---NLLVVTTADQGIKILANADGLRAL 668 (1131)
Q Consensus 626 -----------------------~~~-~~~~~~i~~v~~s-p~~---~~l~~~~~dg~i~iw~~~~~~~~~ 668 (1131)
... .+|...|++++|+ ++| .+|++++.||.|++|++.++...+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~ 366 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESAL 366 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHC
T ss_pred cchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhh
Confidence 111 2455689999866 666 999999999999999997764433
No 67
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.5e-32 Score=316.09 Aligned_cols=342 Identities=14% Similarity=0.168 Sum_probs=269.2
Q ss_pred EEecCCCce-EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEE
Q 001178 535 VDYDAPGLW-CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1131)
Q Consensus 535 ~~~~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 613 (1131)
..+.+|... +.++.+ +++++++++. ++.|++||+.+++.+..+.+|.. .|.+++|++++ .+++|+.||+|+
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~----dg~i~vwd~~~~~~~~~~~~h~~-~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGAD----DKMIRVYDSINKKFLLQLSGHDG-GVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECSTT-EEEEEETTSCEE
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcC----CCcEEEEECCCCcEEEEEeCCCc-CEEEEEEcCCC-EEEEEeCCCCEE
Confidence 355666665 455555 5789999986 99999999999999999998766 89999999987 999999999999
Q ss_pred EEEcCCCeEEEEEeccCCCCCcceEEEc--CCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCcc
Q 001178 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFN--KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSA 691 (1131)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~i~~v~~s--p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1131)
+||+.+++.+..+..+.. .|.+++|+ +++.++++++.||.|++||+.++.........
T Consensus 187 vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~------------------ 246 (464)
T 3v7d_B 187 VWDIKKGCCTHVFEGHNS--TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE------------------ 246 (464)
T ss_dssp EEETTTTEEEEEECCCSS--CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------------------------
T ss_pred EEECCCCcEEEEECCCCC--ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc------------------
Confidence 999999999888875544 89999998 57899999999999999998765211100000
Q ss_pred ceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceE
Q 001178 692 VVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVA 771 (1131)
Q Consensus 692 ~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~ 771 (1131)
....
T Consensus 247 ----------------------------------------------------------------------------~~~~ 250 (464)
T 3v7d_B 247 ----------------------------------------------------------------------------HDYP 250 (464)
T ss_dssp ----------------------------------------------------------------------------CCSS
T ss_pred ----------------------------------------------------------------------------CCcc
Confidence 0000
Q ss_pred EEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEE
Q 001178 772 RLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA 851 (1131)
Q Consensus 772 ~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 851 (1131)
.+.+.+++...+.. ...+|...+.++ ++++++++++
T Consensus 251 ~~~~~~~~~~~~~~------------------------------------------~~~~~~~~v~~~--~~~~~~l~~~ 286 (464)
T 3v7d_B 251 LVFHTPEENPYFVG------------------------------------------VLRGHMASVRTV--SGHGNIVVSG 286 (464)
T ss_dssp EEESCGGGCTTEEE------------------------------------------EECCCSSCEEEE--EEETTEEEEE
T ss_pred eEeeccCCCeEEEE------------------------------------------EccCccceEEEE--cCCCCEEEEE
Confidence 01111111100000 001466666665 6889999999
Q ss_pred e-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCC
Q 001178 852 G-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN 930 (1131)
Q Consensus 852 ~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~ 930 (1131)
+ ||.|++||+.+++++..+.+|...|.+++|+| ++.++++|+.||.|++||+.+++++..+.+|...|.+++|+ +.
T Consensus 287 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~ 363 (464)
T 3v7d_B 287 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DK 363 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SS
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CC
Confidence 8 89999999999999999999999999999999 89999999999999999999999999999999999999997 57
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCC
Q 001178 931 ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSS 1010 (1131)
Q Consensus 931 ~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 1010 (1131)
+|++++.||.|++||+.+++..... ++...+..++|++++.++++++|+.|++||+.+++.+..+... |..
T Consensus 364 ~l~s~s~dg~v~vwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~--~~~ 434 (464)
T 3v7d_B 364 FLVSAAADGSIRGWDANDYSRKFSY-------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILK--DAD 434 (464)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEE-------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTT--TCS
T ss_pred EEEEEeCCCcEEEEECCCCceeeee-------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhcc--CCC
Confidence 9999999999999999986543222 1225678899999999999999999999999999988763322 378
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEE
Q 001178 1011 PISSAAYSCNSQLIYATFTDGSIGVFD 1037 (1131)
Q Consensus 1011 ~v~~i~~s~dg~~l~s~~~dg~i~vwd 1037 (1131)
.|++++|+ ++.++++++.||.+.+|-
T Consensus 435 ~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 435 QIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred cEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 99999997 445555666677666554
No 68
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.2e-33 Score=315.72 Aligned_cols=290 Identities=15% Similarity=0.250 Sum_probs=242.0
Q ss_pred cCCCcEEEEEEecC---CCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC-
Q 001178 345 HQGSSVVSMDFHPF---HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD- 420 (1131)
Q Consensus 345 ~h~~~V~~~~fspd---g~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd- 420 (1131)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.. + .......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--L------------QSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--E------------EEEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--e------------eeccccCCCCcEEEEEeccCC
Confidence 59999999999985 444566666778999999998776542 1 11122347889999999999
Q ss_pred ---CCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEec-CCCceEEEEEcCCCcEEEEe-CCCceeEEe--
Q 001178 421 ---GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-- 493 (1131)
Q Consensus 421 ---g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-- 493 (1131)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.|+.|++|| .+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999876543 6788999999999999 777 899999999999999 778888887
Q ss_pred -cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe----------------------------cCCCceE
Q 001178 494 -EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY----------------------------DAPGLWC 544 (1131)
Q Consensus 494 -~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~----------------------------~~~~~~v 544 (1131)
.+|...|.+++|++ ++.+|++++.||.|++||+++......+ ..+...|
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 78999999999976 5579999999999999999876543322 2377889
Q ss_pred EEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee--------------eEEEecccCCceEEEEEeCC--CCEEEEEEc
Q 001178 545 TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL--------------KRTYIGFRKKSAGVVQFDTT--RNRILAAGE 608 (1131)
Q Consensus 545 ~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~ 608 (1131)
.+++|+ ++++++++. ++.|++||+.++.. +..+..|.. .+.+++|+|+ +++|++++.
T Consensus 235 ~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEec
Confidence 999998 779999886 89999999887643 677777655 7899999999 999999999
Q ss_pred CCcEEEEEcCCCe----EEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 609 DNQIKFWDMDNVN----MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 609 dg~i~iwd~~~~~----~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
||.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999875 34466666545689999999999999999999999999975
No 69
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=321.18 Aligned_cols=310 Identities=13% Similarity=0.179 Sum_probs=247.3
Q ss_pred ccCCCCCcc----cccCCCcccceeeec-c-CCCcEEEEEEec-CCCcEEEEEcCCCeEEEEECCC---Cccccccccee
Q 001178 321 TYPVPSQQA----TWSLDDLPRAVACTM-H-QGSSVVSMDFHP-FHHTLLVVGCGDGEITLWDVGL---RERLVSKPFKI 390 (1131)
Q Consensus 321 ~~s~~~~~~----~~~~~~~~~~~~~~~-~-h~~~V~~~~fsp-dg~~llasg~~dg~v~iwd~~~---~~~~~~~~~~~ 390 (1131)
.|+|+++.. .|. ..++++..+ . |.+.|++++|+| +++ +||+|+.||+|+|||+.+ +.....
T Consensus 34 ~f~~~~~~~~~~~~w~---~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~----- 104 (437)
T 3gre_A 34 EFGPIQEIVRSPNMGN---LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS----- 104 (437)
T ss_dssp GGCCCCCCCCCCCGGG---CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----
T ss_pred hcCCcccccccccccc---ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----
Confidence 455665533 343 345566666 4 889999999999 998 699999999999999876 331110
Q ss_pred ecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEec---CCCcccee-------eeeec--CcCCee
Q 001178 391 WDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQ---GSNDLCQS-------LEIDA--HVGGVN 458 (1131)
Q Consensus 391 ~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~---~~~~~~~~-------~~~~~--h~~~V~ 458 (1131)
....+|...|.+++|+|++++|++|+.||+|++||+. +++..... ..+.. +...+.
T Consensus 105 ------------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 172 (437)
T 3gre_A 105 ------------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV 172 (437)
T ss_dssp ------------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE
T ss_pred ------------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce
Confidence 0122589999999999999999999999999999995 44433211 01112 556677
Q ss_pred EEE--EecCCCceEEEEEcCCCcEEEEe-CCCceeEEecC--CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce
Q 001178 459 DLA--FSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG--HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS 533 (1131)
Q Consensus 459 ~l~--~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~ 533 (1131)
++. +++++. ++++|+.|+.|++|| .+++.+..+.+ |...|.+++|++ ++.+|++++.||.|++||+++...
T Consensus 173 ~~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~ 248 (437)
T 3gre_A 173 RMRAFVNEEKS--LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE--ECCVLILGTTRGIIDIWDIRFNVL 248 (437)
T ss_dssp EEEEEECSSCE--EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT--TSCEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC--CCCEEEEEcCCCeEEEEEcCCccE
Confidence 777 456777 899999999999999 88899999988 899999999965 468999999999999999999888
Q ss_pred eEEec-CCCceEEEEEEc----cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecc----------------------
Q 001178 534 RVDYD-APGLWCTTMLYS----ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF---------------------- 586 (1131)
Q Consensus 534 ~~~~~-~~~~~v~~~~~s----~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------------- 586 (1131)
...+. .+...|.+++++ +++.+|++++. ++.|++||+.+++.+..+.++
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence 77765 677789999665 56789999876 899999999999999888765
Q ss_pred ---cCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC---------------------------------
Q 001178 587 ---RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG--------------------------------- 630 (1131)
Q Consensus 587 ---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------------------------- 630 (1131)
+...|.+++|+ ++++|++++.||.|++||+.+++....+..+.
T Consensus 325 ~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (437)
T 3gre_A 325 GIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS 403 (437)
T ss_dssp CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred ccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcc
Confidence 33357889999 77899999999999999999988777665421
Q ss_pred --CCCCcceEEEcCC--CCEEEEEECCCcEEEEe
Q 001178 631 --GLPSLPRLRFNKE--GNLLVVTTADQGIKILA 660 (1131)
Q Consensus 631 --~~~~i~~v~~sp~--~~~l~~~~~dg~i~iw~ 660 (1131)
+...|++++|+++ +.+|++|+.||.|+||+
T Consensus 404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 5568999999998 78999999999999995
No 70
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.6e-33 Score=320.12 Aligned_cols=350 Identities=14% Similarity=0.167 Sum_probs=246.3
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeC-CCCEEEEEEcCCcEEEEEcCCCeEEEEEec-----------cCCCC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEA-----------EGGLP 633 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~ 633 (1131)
+..+++|+...++....+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++....... ..+..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 44577788877777777777655 899999999 999999999999999999998765443321 13455
Q ss_pred CcceEEEcC-CCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCC
Q 001178 634 SLPRLRFNK-EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPA 712 (1131)
Q Consensus 634 ~i~~v~~sp-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~ 712 (1131)
.|.+++|+| ++.++++++.||.|++||+.++.. ..
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~------------------------------------------- 136 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-AD------------------------------------------- 136 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-EE-------------------------------------------
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-ce-------------------------------------------
Confidence 899999999 778999999999999999865410 00
Q ss_pred CccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceee
Q 001178 713 RPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQK 792 (1131)
Q Consensus 713 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 792 (1131)
T Consensus 137 -------------------------------------------------------------------------------- 136 (408)
T 4a11_B 137 -------------------------------------------------------------------------------- 136 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC---CCCEEEEEe-CCeEEEEECCCceeEE
Q 001178 793 LWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK---NDSYVMSAG-GGKVSLFNMMNFKVMT 868 (1131)
Q Consensus 793 iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~---dg~~la~~~-dg~i~vwd~~~~~~~~ 868 (1131)
.+ .+...+.++++++ ++.++++++ ++.|++||+.+++.+.
T Consensus 137 ~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 137 VF------------------------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH 180 (408)
T ss_dssp EE------------------------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE
T ss_pred ec------------------------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee
Confidence 00 0233445566655 455888888 8999999999999999
Q ss_pred EEeCCCCCeeEEEEeCCCCc-EEEEEeCCCcEEEEEeecce-eEEee---------------cccccCeeEEEEccCCCE
Q 001178 869 TFMSPPPASTFLAFHPQDNN-IIAIGMEDSTIQIYNVRVDE-VKTKL---------------KGHQKHITGLAFSTNLNI 931 (1131)
Q Consensus 869 ~~~~~~~~i~~l~~s~~~~~-~la~g~~dg~I~iwd~~~~~-~~~~~---------------~~h~~~V~~l~~s~dg~~ 931 (1131)
.+..|...|.+++|+| ++. ++++|+.||.|++||+.++. .+..+ .+|.+.|++++|+|++++
T Consensus 181 ~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 259 (408)
T 4a11_B 181 ILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH 259 (408)
T ss_dssp EECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE
T ss_pred eecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE
Confidence 9999999999999999 555 79999999999999998664 33333 579999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCC
Q 001178 932 LVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSP 1011 (1131)
Q Consensus 932 l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 1011 (1131)
|++++.||.|++||+.+++..........................+.+++++.++.|++||+.+++.+..+..| ...
T Consensus 260 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~ 336 (408)
T 4a11_B 260 LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH---YKT 336 (408)
T ss_dssp EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC---SSC
T ss_pred EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC---CCe
Confidence 99999999999999998765433222222222222333444455666777788999999999999999988776 789
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEE
Q 001178 1012 ISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVI 1091 (1131)
Q Consensus 1012 v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW 1091 (1131)
|++++|+|++++|++++.||.|++||+.+++.+........ ...+.|.....+.+++.|+.+++|
T Consensus 337 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~W 401 (408)
T 4a11_B 337 VDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT---------------KSQLNPAFEDAWSSSDEEGGTSAW 401 (408)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------------------
T ss_pred EEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe---------------ccccccccceeecccCccCceeec
Confidence 99999999999999999999999999999887655443221 123344455677888899999999
Q ss_pred ecCC
Q 001178 1092 EPSE 1095 (1131)
Q Consensus 1092 ~~~~ 1095 (1131)
+...
T Consensus 402 ~~~~ 405 (408)
T 4a11_B 402 SHPQ 405 (408)
T ss_dssp ----
T ss_pred CCcc
Confidence 8764
No 71
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-31 Score=301.20 Aligned_cols=323 Identities=17% Similarity=0.235 Sum_probs=263.3
Q ss_pred eeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcE
Q 001178 533 SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQI 612 (1131)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 612 (1131)
....+.+|...|++++|+|++++|++++. ++.|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.||.|
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~i 98 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSK----DSSASVWYSLNGERLGTLDGHTG-TIWSIDVDCFTKYCVTGSADYSI 98 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEES----SSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTTEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeC----CCEEEEEeCCCchhhhhhhhcCC-cEEEEEEcCCCCEEEEEeCCCeE
Confidence 33467789999999999999999999986 89999999999999999988766 89999999999999999999999
Q ss_pred EEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC-----CcEEEEecCCCchhhhhhhccccccccccccccc
Q 001178 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD-----QGIKILANADGLRALRAIETRAYETSRASTEMKV 687 (1131)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1131)
++||+.+++.+..+.. ...+.+++|+|+++++++++.+ +.|++|++..... ...+
T Consensus 99 ~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~-~~~~---------------- 158 (369)
T 3zwl_B 99 KLWDVSNGQCVATWKS---PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSA-THEL---------------- 158 (369)
T ss_dssp EEEETTTCCEEEEEEC---SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTT-TCCE----------------
T ss_pred EEEECCCCcEEEEeec---CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcc-ceee----------------
Confidence 9999999999888873 2379999999999999999999 9999999865410 0000
Q ss_pred cCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCc
Q 001178 688 PGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSA 767 (1131)
Q Consensus 688 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 767 (1131)
... ..
T Consensus 159 ---------------------------------------------------------~~~------------------~~ 163 (369)
T 3zwl_B 159 ---------------------------------------------------------TKV------------------SE 163 (369)
T ss_dssp ---------------------------------------------------------EEE------------------CS
T ss_pred ---------------------------------------------------------ccc------------------cc
Confidence 000 00
Q ss_pred cceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCE
Q 001178 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1131)
..+. .+ ........+.+++|+|++++
T Consensus 164 ~~~~--------------------~~----------------------------------~~~~~~~~~~~~~~~~~~~~ 189 (369)
T 3zwl_B 164 EPIH--------------------KI----------------------------------ITHEGLDAATVAGWSTKGKY 189 (369)
T ss_dssp SCSE--------------------EE----------------------------------ECCTTCCCEEEEEECGGGCE
T ss_pred ceee--------------------ec----------------------------------cCCcCccceeEEEEcCCCCE
Confidence 0000 00 00012337899999999999
Q ss_pred EEEEe-CCeEEEEECCC-ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEE
Q 001178 848 VMSAG-GGKVSLFNMMN-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAF 925 (1131)
Q Consensus 848 la~~~-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 925 (1131)
|++++ +|.|++||+.+ ++.+..+..|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+. +...+.+++|
T Consensus 190 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~ 267 (369)
T 3zwl_B 190 IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVI 267 (369)
T ss_dssp EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEE
T ss_pred EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEe
Confidence 99998 89999999998 788999999999999999999 89999999999999999999999888887 7889999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecC
Q 001178 926 STNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQ 1005 (1131)
Q Consensus 926 s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~ 1005 (1131)
+|+++++++++.++.+.+|...... ....+++||..+++.+..+..|
T Consensus 268 ~~~~~~l~~~~~~~~~~~~~~~~~~---------------------------------~~~~i~~~d~~~~~~~~~~~~~ 314 (369)
T 3zwl_B 268 TPLKEFIILGGGQEAKDVTTTSANE---------------------------------GKFEARFYHKIFEEEIGRVQGH 314 (369)
T ss_dssp CSSSSEEEEEECCC----------------------------------------------CEEEEEETTTCCEEEEEECC
T ss_pred cCCCceEEEeecCCCceEEEEecCC---------------------------------CcceeEEEecCCCcchhheecc
Confidence 9999999999999988777654411 1236899999999999888777
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEe
Q 001178 1006 DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI 1047 (1131)
Q Consensus 1006 ~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~ 1047 (1131)
...|++++|+|++++|++++.||.|++|+++++.....+
T Consensus 315 ---~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 315 ---FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp ---SSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred ---cCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 789999999999999999999999999999877654443
No 72
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.3e-32 Score=319.46 Aligned_cols=303 Identities=17% Similarity=0.234 Sum_probs=231.9
Q ss_pred eEEEecccCCceEEEEEeCC-CCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC-CCCEEEEEECCCcEE
Q 001178 580 KRTYIGFRKKSAGVVQFDTT-RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNLLVVTTADQGIK 657 (1131)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~l~~~~~dg~i~ 657 (1131)
.....+|.. .|++++|+|. +++|++|+.||.|+|||+.+++....+...+|...|++++|+| ++.+|++++.||+|+
T Consensus 112 ~~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 112 LQKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp CCEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 334444443 7999999994 5689999999999999999887766666666777999999998 689999999999999
Q ss_pred EEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceecccc
Q 001178 658 ILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDI 737 (1131)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 737 (1131)
+||+.++.. .
T Consensus 191 iwd~~~~~~--~-------------------------------------------------------------------- 200 (435)
T 4e54_B 191 LQDFKGNIL--R-------------------------------------------------------------------- 200 (435)
T ss_dssp EEETTSCEE--E--------------------------------------------------------------------
T ss_pred EeeccCCce--e--------------------------------------------------------------------
Confidence 999754300 0
Q ss_pred CCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeec
Q 001178 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQ 817 (1131)
Q Consensus 738 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 817 (1131)
. +. .
T Consensus 201 -------------------~-------------------------~~-~------------------------------- 204 (435)
T 4e54_B 201 -------------------V-------------------------FA-S------------------------------- 204 (435)
T ss_dssp -------------------E-------------------------EE-C-------------------------------
T ss_pred -------------------E-------------------------Ee-c-------------------------------
Confidence 0 00 0
Q ss_pred CCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC
Q 001178 818 PSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED 896 (1131)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d 896 (1131)
...+...+.+++|+|++++|++|+ ||.|++||+.+ +.+..+.+|...|.+++|+|++..++++|+.|
T Consensus 205 -----------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 205 -----------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp -----------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred -----------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 001334566789999999999998 89999999864 56677889999999999999556689999999
Q ss_pred CcEEEEEeecceeEE---eecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEE
Q 001178 897 STIQIYNVRVDEVKT---KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF 973 (1131)
Q Consensus 897 g~I~iwd~~~~~~~~---~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 973 (1131)
+.|++||+.+.+... ...+|...|++++|+|||++|++++.||+|++||+.+++......................|
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence 999999998765443 34689999999999999999999999999999999987765443322211111123445567
Q ss_pred cCCCcEEEEEe-------------CCeEEEEeCCCcccceeeecCCCCCCCeEEE-EEccCCCEEEEEecCCcEEEEECC
Q 001178 974 HSDQVRLLVNH-------------ETQLAIYDGSKMECIRQWVPQDVLSSPISSA-AYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 974 s~d~~~l~~~~-------------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i-~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
+|++.+++++. ++.|++||..+++.+..+..+ |...|.++ +|+|||++|++|+ |+.|+||+++
T Consensus 353 ~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~--~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 353 HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP--ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS--SCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC--CCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence 77777666542 357999999999988877543 36788887 6999999999886 8899999999
Q ss_pred CCcee
Q 001178 1040 SLRLR 1044 (1131)
Q Consensus 1040 ~~~~~ 1044 (1131)
+++..
T Consensus 430 ~gk~r 434 (435)
T 4e54_B 430 EARTR 434 (435)
T ss_dssp -----
T ss_pred cCeee
Confidence 88753
No 73
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.3e-32 Score=308.16 Aligned_cols=301 Identities=14% Similarity=0.122 Sum_probs=228.6
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCC-------CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGD-------GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
.-+.+|+|++|+|||+ +|++|+.| +.|+||++..+.......+. ......+.+|...|.++++
T Consensus 12 ~~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~ 81 (365)
T 4h5i_A 12 NVGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDA 81 (365)
T ss_dssp ECSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEE
T ss_pred CCCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEe
Confidence 3456899999999997 68888653 36999999876543211111 1112247789999988876
Q ss_pred cCCCCEEEEE-----------eCCCeEEEEEecCCCcccee------eeeecCcCCeeEEEEecCCCceEEEEEcCCCcE
Q 001178 418 SPDGNFIGVA-----------FTKHLIHLYTYQGSNDLCQS------LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 418 spdg~~las~-----------~~d~~i~vwd~~~~~~~~~~------~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 480 (1131)
+ ++.+++| +.|+++++|++......... .....+...+.+++|||||+.+.+++++.|++|
T Consensus 82 ~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i 159 (365)
T 4h5i_A 82 S--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIM 159 (365)
T ss_dssp E--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEE
T ss_pred C--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEE
Confidence 5 4566655 45788999999876432111 112334566899999999996445677789999
Q ss_pred EEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE--ecCCCceEEEEEEccCCCEEE
Q 001178 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD--YDAPGLWCTTMLYSADGSRLF 557 (1131)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~ 557 (1131)
+||| .+++++..+. |...|.+++|+| +++++++++.+ .+++|+..++..... ...+...|.+++|+|++++++
T Consensus 160 ~iwd~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 235 (365)
T 4h5i_A 160 RIIDPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLI 235 (365)
T ss_dssp EEEETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEE
T ss_pred EEeECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEE
Confidence 9999 7888888775 778899999964 66899998855 456666666655443 345677899999999999999
Q ss_pred EEeecCCCCceEEEEeCCCCee----eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEE-eccCCC
Q 001178 558 SCGTSKEGDSHLVEWNESEGAL----KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST-EAEGGL 632 (1131)
Q Consensus 558 ~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~ 632 (1131)
+++.+......+++|+...+.. ...+.+|.. .|.+++|+|++++|++|+.|++|+|||+.+++++..+ ..| .
T Consensus 236 ~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~ 312 (365)
T 4h5i_A 236 AASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--S 312 (365)
T ss_dssp EEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--S
T ss_pred EEecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--c
Confidence 9987544445788999876653 334556554 8999999999999999999999999999999988775 444 4
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 633 PSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 633 ~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
..|++++|+|||++|++++.|++|+||++...
T Consensus 313 ~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 313 FAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 48999999999999999999999999999655
No 74
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-31 Score=307.76 Aligned_cols=289 Identities=16% Similarity=0.263 Sum_probs=242.1
Q ss_pred cCCCc--EEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 345 HQGSS--VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 345 ~h~~~--V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
+|.+. +.+++|++ .. +++++.||.|+|||+.+++.... ....|...|.+++|+|+++
T Consensus 89 ~~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~~ 147 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDGS 147 (401)
T ss_dssp TCCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTSS
T ss_pred CCcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCCC
Confidence 45555 44555655 44 56677899999999999876542 2234889999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-C-CCceeEEecCCccCe
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L-SGRKLFQFEGHEAPV 500 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-~~~~~~~~~~h~~~v 500 (1131)
+|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.|++|| . .+..+..+.+|.+.|
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 220 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred EEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCe
Confidence 99999999999999999887544 677999999999994 45 799999999999999 3 577788899999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
.+++|++ ++.+|++++.||.|++||+++......+..+...|.+++|+|++..+++.+ ++..++.|++||+.+++.+
T Consensus 221 ~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~-~gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 221 CGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATG-GGTMDKQIHFWNAATGARV 297 (401)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEE-CCTTTCEEEEEETTTCCEE
T ss_pred eEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEe-cCCCCCEEEEEECCCCCEE
Confidence 9999976 568999999999999999999888888888999999999999876555543 1123899999999999999
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEE--cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001178 581 RTYIGFRKKSAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~i 658 (1131)
..+.. ...+.+++|+|+++++++++ .||.|++||+.+++........++...|.+++|+|++.+|++++.||.|++
T Consensus 298 ~~~~~--~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~i 375 (401)
T 4aez_A 298 NTVDA--GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375 (401)
T ss_dssp EEEEC--SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEE
T ss_pred EEEeC--CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 88863 34799999999999999954 899999999999877766555555668999999999999999999999999
Q ss_pred EecCCCch
Q 001178 659 LANADGLR 666 (1131)
Q Consensus 659 w~~~~~~~ 666 (1131)
|++.++..
T Consensus 376 w~~~~~~~ 383 (401)
T 4aez_A 376 WRVYDGDH 383 (401)
T ss_dssp EECCC---
T ss_pred EECCCCcc
Confidence 99988743
No 75
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.9e-31 Score=304.68 Aligned_cols=306 Identities=15% Similarity=0.255 Sum_probs=246.9
Q ss_pred EEeCCCCeeeEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC-CCCEEE
Q 001178 571 EWNESEGALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNLLV 648 (1131)
Q Consensus 571 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~l~ 648 (1131)
+|+....+....+.+|.. .|.+++|+|++ ++|++|+.||.|++||+.+++....+...++...|.+++|+| ++.+++
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 445566677778887665 89999999999 899999999999999999988888877655666899999999 789999
Q ss_pred EEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCC
Q 001178 649 VTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGI 728 (1131)
Q Consensus 649 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 728 (1131)
+++.|+.|++||+.+.. ..
T Consensus 136 s~~~d~~i~iwd~~~~~--~~----------------------------------------------------------- 154 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGSV--IQ----------------------------------------------------------- 154 (383)
T ss_dssp EEETTTEEEEEETTSCE--EE-----------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCCc--eE-----------------------------------------------------------
Confidence 99999999999975320 00
Q ss_pred CCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccc
Q 001178 729 EKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKAT 808 (1131)
Q Consensus 729 ~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 808 (1131)
.+.
T Consensus 155 ----------------------------------------------------------------~~~------------- 157 (383)
T 3ei3_B 155 ----------------------------------------------------------------VFA------------- 157 (383)
T ss_dssp ----------------------------------------------------------------EEE-------------
T ss_pred ----------------------------------------------------------------EEe-------------
Confidence 000
Q ss_pred eeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCC
Q 001178 809 AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDN 887 (1131)
Q Consensus 809 ~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 887 (1131)
....+...|.+++|+|++++|++++ |+.|++||+ +++.+..+..|...|.+++|+| ++
T Consensus 158 -------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~ 216 (383)
T 3ei3_B 158 -------------------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RC 216 (383)
T ss_dssp -------------------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SC
T ss_pred -------------------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CC
Confidence 0003567788999999999999998 899999999 5778889999999999999999 66
Q ss_pred c-EEEEEeCCCcEEEEEeec----ceeEEeecccccCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001178 888 N-IIAIGMEDSTIQIYNVRV----DEVKTKLKGHQKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA 961 (1131)
Q Consensus 888 ~-~la~g~~dg~I~iwd~~~----~~~~~~~~~h~~~V~~l~~s~-dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~ 961 (1131)
. +|++|+.|+.|++||+.+ +.++..+ +|.+.|++++|+| ++++|++++.|+.|++||+.+++...........
T Consensus 217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 295 (383)
T 3ei3_B 217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR 295 (383)
T ss_dssp TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC
T ss_pred CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc
Confidence 6 999999999999999998 5666666 6999999999999 9999999999999999999987764433321111
Q ss_pred -CCCC----------CCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC
Q 001178 962 -GKLP----------VGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD 1030 (1131)
Q Consensus 962 -~~~~----------~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d 1030 (1131)
..+. ..+..++|+|++++ +.+.|+.|++||+.+++.+..+..+. +...+..++|+||+++|++|+ |
T Consensus 296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~-~~~~~~~~~~s~~g~~l~s~s-d 372 (383)
T 3ei3_B 296 QFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPN-AAGIISLNKFSPTGDVLASGM-G 372 (383)
T ss_dssp CCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTT-BCSCCCEEEECTTSSEEEEEE-T
T ss_pred ccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCC-CCceEEEEEEecCccEEEEec-C
Confidence 0011 23344666666666 33469999999999999998887642 367788889999999999997 9
Q ss_pred CcEEEEECCC
Q 001178 1031 GSIGVFDADS 1040 (1131)
Q Consensus 1031 g~i~vwd~~~ 1040 (1131)
+.|++||+++
T Consensus 373 ~~i~iw~~~~ 382 (383)
T 3ei3_B 373 FNILIWNRED 382 (383)
T ss_dssp TEEEEEECC-
T ss_pred CcEEEEecCC
Confidence 9999999864
No 76
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-33 Score=321.25 Aligned_cols=285 Identities=13% Similarity=0.086 Sum_probs=223.9
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCC--cccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR--ERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
+.+.|++++|+|+|+ +||+|+.||.|+|||+.++ +.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 667999999999998 6999999999999999987 3332 46799999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCc---eeEEecC-Ccc
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR---KLFQFEG-HEA 498 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~---~~~~~~~-h~~ 498 (1131)
|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++|| ..++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998773334456788999999999999999 799999999999999 5554 3677777 999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCC------------------CceeEEecCCCceEEEEEEccCCCEEEEEe
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN------------------VGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~------------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 560 (1131)
.|.+++|++ ++.+|++++.|+.|++||++. ......+ .|...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 999999976 558999999999999999853 2233344 7788899999999999999998
Q ss_pred ecCCCCceEEEEeCCCCee----eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe---------------
Q 001178 561 TSKEGDSHLVEWNESEGAL----KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN--------------- 621 (1131)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--------------- 621 (1131)
. ++.|++||+.+++. +..+.+|.. .+.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 6 89999999999887 777887665 89999999999999888776655 66654211
Q ss_pred ------------------------EEEEEec-----------cCCCCCcceEEEcCCC-C---EEEEEECCCcEEEEec
Q 001178 622 ------------------------MLTSTEA-----------EGGLPSLPRLRFNKEG-N---LLVVTTADQGIKILAN 661 (1131)
Q Consensus 622 ------------------------~~~~~~~-----------~~~~~~i~~v~~sp~~-~---~l~~~~~dg~i~iw~~ 661 (1131)
....... ..|...|+++.+.+.. . .+++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 1155578899876543 3 6999999999999985
No 77
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.5e-32 Score=311.13 Aligned_cols=294 Identities=12% Similarity=0.119 Sum_probs=250.5
Q ss_pred eEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc------eeEEecCCCceEEEEEEccC----C---CEE
Q 001178 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG------SRVDYDAPGLWCTTMLYSAD----G---SRL 556 (1131)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~------~~~~~~~~~~~v~~~~~s~~----g---~~l 556 (1131)
...+.+|.+.|.+++|++ .+|++++.||.|++|++.... ....+..|...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 456779999999999965 699999999999999999887 67788889999999999999 9 999
Q ss_pred EEEeecCCCCceEEEEeCCCCee-----eEEEeccc----CCceEEEEEe----CCCCE-EEEEEcCCcEEEEEcCC---
Q 001178 557 FSCGTSKEGDSHLVEWNESEGAL-----KRTYIGFR----KKSAGVVQFD----TTRNR-ILAAGEDNQIKFWDMDN--- 619 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~-----~~~~~~~~----~~~v~~~~~s----~~~~~-l~~~~~dg~i~iwd~~~--- 619 (1131)
++++. ++.|++||+.+++. +..+..+. ...+.+++|+ |++++ |++++.||.|++||+.+
T Consensus 85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99986 89999999998886 78888774 4589999999 99999 99999999999999988
Q ss_pred ---CeEEE-----EEec-----cCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhcccccccccccccc
Q 001178 620 ---VNMLT-----STEA-----EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMK 686 (1131)
Q Consensus 620 ---~~~~~-----~~~~-----~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1131)
++.+. .+.. ..+...|.+++|+|++ ++++++.||.|++||+.++. ...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~----------------- 221 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-PLY----------------- 221 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-EEE-----------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc-eeE-----------------
Confidence 55554 5543 3345579999999999 99999999999999986541 000
Q ss_pred ccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCC
Q 001178 687 VPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDS 766 (1131)
Q Consensus 687 ~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 766 (1131)
T Consensus 222 -------------------------------------------------------------------------------- 221 (397)
T 1sq9_A 222 -------------------------------------------------------------------------------- 221 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCC---CCCeeEEEecC
Q 001178 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENA---EDVVPCVALSK 843 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~---~~~i~~l~~s~ 843 (1131)
.+. ....| ...|.+++|+|
T Consensus 222 --------------------------~~~--------------------------------~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 222 --------------------------NFE--------------------------------SQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp --------------------------EEE--------------------------------CCC---CCCCCEEEEEECS
T ss_pred --------------------------EEe--------------------------------ccccccccCCccceEEECC
Confidence 000 00024 67789999999
Q ss_pred CCCEEEEEe-C---CeEEEEECCCceeEEEEeC-------------CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001178 844 NDSYVMSAG-G---GKVSLFNMMNFKVMTTFMS-------------PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1131)
Q Consensus 844 dg~~la~~~-d---g~i~vwd~~~~~~~~~~~~-------------~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~ 906 (1131)
++++|++++ + +.|++||+.+++.+..+.. |...|.+++|+| ++++|++++.||.|++||+.+
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCC
Confidence 999999998 7 8999999999999999998 899999999999 899999999999999999999
Q ss_pred ceeEEeec------cc---------------ccCeeEEEEccCC----------CEEEEEeCCCcEEEEEcCCC
Q 001178 907 DEVKTKLK------GH---------------QKHITGLAFSTNL----------NILVSSGSDAQLIFWNTDTW 949 (1131)
Q Consensus 907 ~~~~~~~~------~h---------------~~~V~~l~~s~dg----------~~l~s~~~Dg~v~lwd~~~~ 949 (1131)
++.+..+. +| ...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99999999 88 9999999999998 79999999999999999875
No 78
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.2e-32 Score=307.43 Aligned_cols=317 Identities=16% Similarity=0.259 Sum_probs=244.9
Q ss_pred ecCCccCeEEEeeccc--CCccEEEEEecCCeEEEEeCCCCceeEEecC-----CCceEEEEEEccC----CCEEEEEee
Q 001178 493 FEGHEAPVYSVCPHQK--ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-----PGLWCTTMLYSAD----GSRLFSCGT 561 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~--~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-----~~~~v~~~~~s~~----g~~l~~~~~ 561 (1131)
..+|..+|.+++|+|. .....+++++.++.|++||+.+.+....+.. +...|.+++|+|+ +++|++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4489999999999874 2235677777788999999997776554432 4567999999999 678999886
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC-CCCEEEEEEcCCcEEEEEcCCCeEEEEEec-cCCCCCcceEE
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEA-EGGLPSLPRLR 639 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~i~~v~ 639 (1131)
++.|++||+.+++.+..+.+|.. .|.+++|+| ++.+|++++.||.|++||+.+++.+..+.. ..+...|.+++
T Consensus 94 ----dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 94 ----RGIIRIINPITMQCIKHYVGHGN-AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp ----TCEEEEECTTTCCEEEEEESCCS-CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred ----CCEEEEEEchhceEeeeecCCCC-cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 89999999999999999988765 899999999 899999999999999999999998888732 23445899999
Q ss_pred EcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcccccc
Q 001178 640 FNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719 (1131)
Q Consensus 640 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~ 719 (1131)
|+|++.++++++.||.|++||+.++ .....+.... .++|+
T Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~-------------------~~~~~-------------------- 208 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHSLKLWRINSK-RMMNAIKESY-------------------DYNPN-------------------- 208 (366)
T ss_dssp ECTTSSEEEEEETTSCEEEEESCSH-HHHHHHHHHH-------------------TCCGG--------------------
T ss_pred ECCCCCEEEEecCCCCEEEEECCCC-ccccccceeE-------------------EecCC--------------------
Confidence 9999999999999999999999876 3443333210 23333
Q ss_pred CCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCC
Q 001178 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRT 799 (1131)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 799 (1131)
+..+...........+.
T Consensus 209 -----------------------------------------------------------~~~~~~~~~~~~~~~~~---- 225 (366)
T 3k26_A 209 -----------------------------------------------------------KTNRPFISQKIHFPDFS---- 225 (366)
T ss_dssp -----------------------------------------------------------GCSSCCCCEEECCCSEE----
T ss_pred -----------------------------------------------------------CCcccccceeeccCccc----
Confidence 00000000000000000
Q ss_pred CCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCce-------------
Q 001178 800 EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFK------------- 865 (1131)
Q Consensus 800 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~------------- 865 (1131)
....|...|.+++|+ ++++++++ |+.|++||+.++.
T Consensus 226 ----------------------------~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 275 (366)
T 3k26_A 226 ----------------------------TRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNV 275 (366)
T ss_dssp ----------------------------ECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCE
T ss_pred ----------------------------cccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcch
Confidence 001366777788887 56777776 7788888877653
Q ss_pred -eEEEEeCCCCCeeEEEEeCCC--CcEEEEEeCCCcEEEEEeecce----eEEeeccc--ccCeeEEEEccCCCEEEEEe
Q 001178 866 -VMTTFMSPPPASTFLAFHPQD--NNIIAIGMEDSTIQIYNVRVDE----VKTKLKGH--QKHITGLAFSTNLNILVSSG 936 (1131)
Q Consensus 866 -~~~~~~~~~~~i~~l~~s~~~--~~~la~g~~dg~I~iwd~~~~~----~~~~~~~h--~~~V~~l~~s~dg~~l~s~~ 936 (1131)
.+..+..|...|.+++|+| + +++|++|+.||.|++||+.+++ ....+.+| ...|++++|+|++++|++++
T Consensus 276 ~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 354 (366)
T 3k26_A 276 TILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC 354 (366)
T ss_dssp EEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred heeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe
Confidence 3777888999999999999 7 9999999999999999999875 34477777 79999999999999999999
Q ss_pred CCCcEEEEEcCC
Q 001178 937 SDAQLIFWNTDT 948 (1131)
Q Consensus 937 ~Dg~v~lwd~~~ 948 (1131)
.||.|++||+.+
T Consensus 355 ~dg~i~iwd~~~ 366 (366)
T 3k26_A 355 DDASIWRWDRLR 366 (366)
T ss_dssp TTSEEEEEEC--
T ss_pred CCCEEEEEEecC
Confidence 999999999853
No 79
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3e-31 Score=306.60 Aligned_cols=281 Identities=15% Similarity=0.263 Sum_probs=239.3
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 428 (1131)
..+.|+||+++ +||+|. |++|+|||+.+|+..... .+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999875 688886 899999999999876421 2457889999999999999999999
Q ss_pred CCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeEEEeec
Q 001178 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPH 506 (1131)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~~~~~~ 506 (1131)
.||+|++||+.+++.+. .+.+|...|.+++++ +. ++++|+.|+.+++|| .....+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987554 678999999988875 55 799999999999999 4566778899999999999986
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCce----eEEecCCCceEEEEEEccCCCEE-EEEeecCCCCceEEEEeCCCCeeeE
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGS----RVDYDAPGLWCTTMLYSADGSRL-FSCGTSKEGDSHLVEWNESEGALKR 581 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~l-~~~~~~~~~~~~i~iwd~~~~~~~~ 581 (1131)
+ ++.++++++.|+.+++|+...... ......+...|.+++|+|++..+ ++++ +..|+.|++||+.+++...
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~--gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG--GTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE--CTTTCEEEEEETTTTEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe--ecCCCEEEEEeCCccccce
Confidence 5 558999999999999999987653 34566788899999999976655 4443 2348999999999999998
Q ss_pred EEecccCCceEEEEEeCCCCEEEEEE--cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001178 582 TYIGFRKKSAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 582 ~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw 659 (1131)
.+..+. .+.++.|+++++.+++++ .|+.|++||+.+++++..+..|.. .|.+++|+|+|++|++|+.|++|++|
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 887643 688899999999988865 789999999999999999876644 89999999999999999999999999
Q ss_pred ecCCC
Q 001178 660 ANADG 664 (1131)
Q Consensus 660 ~~~~~ 664 (1131)
++.+.
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 98664
No 80
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-31 Score=293.45 Aligned_cols=251 Identities=18% Similarity=0.282 Sum_probs=211.4
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~ 481 (1131)
++.+|.+.|.+++|+|||++||+|+.|++|+|||+.++. .....++.+|.++|++++|+++ ++ +|++|+.|++|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~ 80 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVM 80 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEE
Confidence 467999999999999999999999999999999997542 1233468899999999999864 77 899999999999
Q ss_pred EEe-CCCc--eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce--eEEecCCCceEEEEEEccC----
Q 001178 482 VWD-LSGR--KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSAD---- 552 (1131)
Q Consensus 482 iwd-~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~---- 552 (1131)
||| .+++ .+..+.+|...|.+++|+|..++.+|++++.|+.|++||++.... ...+..|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 999 5553 567788999999999998875578999999999999999987532 3566788889999999997
Q ss_pred ---------CCEEEEEeecCCCCceEEEEeCCCCe----eeEEEecccCCceEEEEEeCCC---CEEEEEEcCCcEEEEE
Q 001178 553 ---------GSRLFSCGTSKEGDSHLVEWNESEGA----LKRTYIGFRKKSAGVVQFDTTR---NRILAAGEDNQIKFWD 616 (1131)
Q Consensus 553 ---------g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd 616 (1131)
+++|++++. |+.|++||+++++ ....+.+|.. .|.+++|+|++ .+|++++.|++|++||
T Consensus 161 ~~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ---------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 578999986 8999999998765 5667777665 89999999985 7999999999999999
Q ss_pred cCCCe---EEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 617 MDNVN---MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 617 ~~~~~---~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
+.+.. ....+....+...|.+++|+|++++|++++.|+.|++|+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 98743 12223223445579999999999999999999999999975
No 81
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=308.99 Aligned_cols=316 Identities=11% Similarity=0.087 Sum_probs=245.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
-...|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|||
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence 567999999999998 699999999999 7444432 35899999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCcc-----Ce
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEA-----PV 500 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~-----~v 500 (1131)
.++++.+|+.+....+ .+ +|...|.+++|||||+ .|++++.||.|+|||..+ ++..+. |.. .|
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCE
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccE
Confidence 5666666665432211 22 5688999999999999 799999999999999544 667777 765 49
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCce-------eEEe----cCCCceEEEEEEccCCCEEEEEeecCCCCceE
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-------RVDY----DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 569 (1131)
.+++|+| +|++|++|+.||+|++||+..+.. ...+ .+|..+|.+++|+||| +++++. |+.+
T Consensus 133 ~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tV 204 (588)
T 2j04_A 133 HCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSV 204 (588)
T ss_dssp EEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCE
T ss_pred EEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeE
Confidence 9999954 678999999999999999988752 3444 5567799999999999 666665 8999
Q ss_pred EEEeCCCCee---eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEE--cCCC
Q 001178 570 VEWNESEGAL---KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF--NKEG 644 (1131)
Q Consensus 570 ~iwd~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~--sp~~ 644 (1131)
++||+.++.. .+++..++...|.+++|+ ++.+++++ +++|++||+.+++....... +...+..++| +|++
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d~ 279 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEKES 279 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCSSC
T ss_pred EEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCCCC
Confidence 9999988774 356643344589999999 58898887 69999999998877444433 4558999999 9999
Q ss_pred CEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCcc
Q 001178 645 NLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSA 724 (1131)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~ 724 (1131)
..+++++.+|+ ++|....- +++|+
T Consensus 280 ~~La~a~edG~-klw~~d~~------------------------------~~spd------------------------- 303 (588)
T 2j04_A 280 TILLMSNKTSY-KVLLEDEL------------------------------HVTAD------------------------- 303 (588)
T ss_dssp EEEEECSSCEE-EEEESSSE------------------------------EEECC-------------------------
T ss_pred CEEEEEcCCCC-EEEeeccE------------------------------EECCC-------------------------
Confidence 99999999999 99987510 35555
Q ss_pred ccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeee
Q 001178 725 ARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS 787 (1131)
Q Consensus 725 ~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 787 (1131)
+..+++ .|+++++|+....... . -.+...|.+++|+|||..+++++.
T Consensus 304 ----~~l~a~--~d~~v~lW~~~g~~l~---------~-~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 304 ----NIIAPY--LEKKFKKWSTIWNEFN---------N-YETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ----CSSHHH--HHHHHHHTTTTTTSSS---------S-SCCEEEEEEEEECTTSSEEEEEEE
T ss_pred ----ceEEEE--cCCEEEEEECCCCcee---------e-eccceEEEEEEECCCCCEEEEEEe
Confidence 222333 3789999987542210 0 124567899999999999988775
No 82
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.6e-31 Score=304.17 Aligned_cols=324 Identities=13% Similarity=0.098 Sum_probs=243.3
Q ss_pred cCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe--eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEE
Q 001178 538 DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFW 615 (1131)
Q Consensus 538 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 615 (1131)
..|...|.+++|+|++++|++++. ++.|++||..+++ .+..+.+|.. .+.+++|+|++++|++++.||.|++|
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~----d~~v~i~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCSS-CEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cccCCCeEEEEECCCCCEEEEEeC----CCEEEEEeCCCCcEEeeeeecCCCC-cccEEEEeCCCCEEEEEcCCCeEEEE
Confidence 457788999999999999999976 8999999999887 7888887665 89999999999999999999999999
Q ss_pred EcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceec
Q 001178 616 DMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTT 695 (1131)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1131)
|+.+++.........+...|.+++|+|+++++++++.|+.|++|++..+... .
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~-~-------------------------- 132 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW-W-------------------------- 132 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE-E--------------------------
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc-e--------------------------
Confidence 9999887766655556668999999999999999999999999998654100 0
Q ss_pred ccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEe
Q 001178 696 ITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLY 775 (1131)
Q Consensus 696 ~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 775 (1131)
. ...
T Consensus 133 --------------------------------------------------~--------~~~------------------ 136 (372)
T 1k8k_C 133 --------------------------------------------------V--------CKH------------------ 136 (372)
T ss_dssp --------------------------------------------------E--------EEE------------------
T ss_pred --------------------------------------------------e--------eee------------------
Confidence 0 000
Q ss_pred ecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CC
Q 001178 776 TNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GG 854 (1131)
Q Consensus 776 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg 854 (1131)
+...|...|.+++|+|++++|++++ ||
T Consensus 137 ----------------------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 137 ----------------------------------------------------IKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp ----------------------------------------------------ECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ----------------------------------------------------eecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 0002344555555555555555555 55
Q ss_pred eEEEEE------------------CCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeeccc
Q 001178 855 KVSLFN------------------MMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH 916 (1131)
Q Consensus 855 ~i~vwd------------------~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h 916 (1131)
.|++|| ...++.+..+..|...|.+++|+| ++.+|++++.||.|++||+.+++++..+..|
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 243 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASE 243 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEEccC
Confidence 555555 346778888888999999999999 8899999999999999999999999999999
Q ss_pred ccCeeEEEEccCCCEEEEEeCCCcEEEEEcCC--CceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEE---
Q 001178 917 QKHITGLAFSTNLNILVSSGSDAQLIFWNTDT--WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIY--- 991 (1131)
Q Consensus 917 ~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~--~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vw--- 991 (1131)
..+|++++|+|++.+|+++ .|+.|++|++.. ++-.. ........ . -..+....+++|
T Consensus 244 ~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~---~~~~~~~~----~----------~~~~~~~~~~~~~~~ 305 (372)
T 1k8k_C 244 TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSF---GGRLDVPK----Q----------SSQRGLTARERFQNL 305 (372)
T ss_dssp SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEE---CCCCCCC----------------------CHHHHHHHC
T ss_pred CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEE---eeccCccc----c----------chhhhcchhhhhhhc
Confidence 9999999999999988887 899999999987 43111 11110000 0 011112334444
Q ss_pred eCCCcccc------eeeecCCCCCCCeEEEEEc-cCC---CEEEEEecCCcEEEEECCCCce
Q 001178 992 DGSKMECI------RQWVPQDVLSSPISSAAYS-CNS---QLIYATFTDGSIGVFDADSLRL 1043 (1131)
Q Consensus 992 d~~~~~~~------~~~~~~~~~~~~v~~i~~s-~dg---~~l~s~~~dg~i~vwd~~~~~~ 1043 (1131)
+.. +... ..+. .+|...|++++|. ++| ++|++|+.||.|++|++.+++.
T Consensus 306 ~~~-~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 306 DKK-ASSEGSAAAGAGLD--SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp CCC-C---------CCCS--SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred ccc-cccccCcccccccc--ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 322 2221 2221 2458899999966 677 9999999999999999987653
No 83
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.3e-31 Score=328.73 Aligned_cols=248 Identities=22% Similarity=0.294 Sum_probs=214.4
Q ss_pred eccCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEecCCCcc--ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcE
Q 001178 404 IVKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQGSNDL--CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg-~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 480 (1131)
.+.+|.+.|++++|+|++ ++|++|+.|++|++||+.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 578999999999999875 79999999999999999865432 22346789999999999999999 89999999999
Q ss_pred EEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe---cCCCceEEEEEEccCC--C
Q 001178 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY---DAPGLWCTTMLYSADG--S 554 (1131)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~g--~ 554 (1131)
+||| .++..+..+.+|...|.+++|++ ++.+|++++.|++|++||.......... ..|...|.+++|+|++ .
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 9999 78888999999999999999965 5579999999999999998654333222 3567789999999987 5
Q ss_pred EEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCC
Q 001178 555 RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS 634 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1131)
.+++++. ++.|++||+++++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 533 ~l~s~s~----d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~~ 604 (694)
T 3dm0_A 533 TIVSASW----DKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SV 604 (694)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---SC
T ss_pred eEEEEeC----CCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---Cc
Confidence 7888886 89999999999999999988766 8999999999999999999999999999999988776543 36
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 635 LPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 635 i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
|.+++|+|++.++++++ ++.|++||+.++
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 89999999998887765 556999999876
No 84
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.9e-31 Score=290.56 Aligned_cols=249 Identities=14% Similarity=0.226 Sum_probs=205.8
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC--CC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD--GN 422 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd--g~ 422 (1131)
+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++.... ...+.+|.+.|.+++|+|+ |+
T Consensus 7 ~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~-----------------~~~l~gH~~~V~~v~~s~~~~g~ 68 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFGT 68 (297)
T ss_dssp SCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCC-----------------CEEECCCSSCEEEEEECCGGGCS
T ss_pred CCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEE-----------------EEEEccccCCeEEEEecCCCcCC
Confidence 5999999999999998 59999999999999997542111 1157799999999999874 89
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-CCCc--eeEEecCCc
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSGR--KLFQFEGHE 497 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~~--~~~~~~~h~ 497 (1131)
+||+|+.|++|++||+.+++. .....+.+|...|.+++|+|+ +. +|++++.|++|++|| .++. ....+.+|.
T Consensus 69 ~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~ 145 (297)
T 2pm7_B 69 ILASCSYDGKVMIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (297)
T ss_dssp EEEEEETTTEEEEEEBSSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred EEEEEcCCCEEEEEEcCCCce-EEEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeeccc
Confidence 999999999999999988742 223357789999999999998 67 899999999999999 4432 245678999
Q ss_pred cCeEEEeecccC-----------CccEEEEEecCCeEEEEeCCCCc----eeEEecCCCceEEEEEEccCC---CEEEEE
Q 001178 498 APVYSVCPHQKE-----------NIHFIFSTAVDGKIKAWLYDNVG----SRVDYDAPGLWCTTMLYSADG---SRLFSC 559 (1131)
Q Consensus 498 ~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~g---~~l~~~ 559 (1131)
..|.+++|+|.. ++.+|++|+.|++|++||+++.. ....+..|...|.+++|+|++ .+|+++
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~ 225 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV 225 (297)
T ss_dssp SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence 999999998752 35799999999999999998765 445678899999999999995 889999
Q ss_pred eecCCCCceEEEEeCCCCe--eeE-EE--ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 560 GTSKEGDSHLVEWNESEGA--LKR-TY--IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~~~~~--~~~-~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
+. |+.|++||..++. ... .+ ..+ ...+.+++|+|++++|++++.||.|++|+...
T Consensus 226 s~----D~~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 226 SQ----DRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp ET----TSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EC----CCcEEEEEeCCCCCccceeeeecccC-CCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 86 9999999987643 222 22 233 34799999999999999999999999999763
No 85
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.6e-31 Score=299.58 Aligned_cols=202 Identities=10% Similarity=0.097 Sum_probs=167.8
Q ss_pred CCCCeeEEEecCCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce
Q 001178 832 AEDVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~ 908 (1131)
+...+.+++|||||+++++++ |++|+|||+.+++++..+. |...|.+++|+| ++++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556788999999999987654 6899999999999999886 677899999999 89999998854 56777777766
Q ss_pred eEE--eecccccCeeEEEEccCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 909 VKT--KLKGHQKHITGLAFSTNLNILVSSGSDA----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 909 ~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~Dg----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
.+. ...+|...|.+++|+||++++++++.|+ .+++|++.............. .+...|.+++|+|||++||+
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~Spdg~~las 286 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT--NRFKGITSMDVDMKGELAVL 286 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE--SSCSCEEEEEECTTSCEEEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec--CCCCCeEeEEECCCCCceEE
Confidence 543 4567999999999999999999999887 688899877654322222222 22368999999999999998
Q ss_pred Ee-CCeEEEEeCCCcccceee-ecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 001178 983 NH-ETQLAIYDGSKMECIRQW-VPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1131)
Q Consensus 983 ~~-d~~i~vwd~~~~~~~~~~-~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~ 1041 (1131)
++ |+.|+|||+.+++++..+ .+| ..+|++++|||||++||+|+.|++|+|||++..
T Consensus 287 gs~D~~V~iwd~~~~~~~~~~~~gH---~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 287 ASNDNSIALVKLKDLSMSKIFKQAH---SFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTSCEEEEETTTTEEEEEETTSS---SSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EcCCCEEEEEECCCCcEEEEecCcc---cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 65 899999999999988875 345 889999999999999999999999999999643
No 86
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.3e-30 Score=287.43 Aligned_cols=281 Identities=15% Similarity=0.272 Sum_probs=234.3
Q ss_pred EEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeC
Q 001178 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT 429 (1131)
Q Consensus 350 V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~ 429 (1131)
.++|+||+++ +||+|. |++|+|||+.+|+.+... .+.+|...|.+++|+|+|++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~-----------------~~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999987 688875 999999999999876421 24588899999999999999999999
Q ss_pred CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeEEEeecc
Q 001178 430 KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQ 507 (1131)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~~~~~~~ 507 (1131)
||+|++||+++++.+. .+.+|...+.++.+. +. .+++++.++.+++|+ .....+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999987554 678999888776654 55 799999999999999 44566788899999999999864
Q ss_pred cCCccEEEEEecCCeEEEEeCCCCce----eEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 508 KENIHFIFSTAVDGKIKAWLYDNVGS----RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 508 ~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
++.++++++.||.|++||+++++. ......+...|.++.++|++..++.... ...++.|++||..........
T Consensus 161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 557999999999999999987653 2345567778999999998776654332 234789999999988877665
Q ss_pred ecccCCceEEEEEeCCCCEEEEEE--cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 584 IGFRKKSAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
.. ...+..+.|+++++.+++++ .|+.|++||+.+++++..+..|.. .|++++|+|++++|++++.||+|+|||+
T Consensus 238 ~~--~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 238 DA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp EC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred cc--eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 53 33688999999999888765 799999999999999999876644 8999999999999999999999999998
Q ss_pred CCC
Q 001178 662 ADG 664 (1131)
Q Consensus 662 ~~~ 664 (1131)
.+.
T Consensus 314 ~~~ 316 (318)
T 4ggc_A 314 FEL 316 (318)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 87
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.1e-31 Score=311.62 Aligned_cols=300 Identities=12% Similarity=0.201 Sum_probs=232.7
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCC------------C
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSS------------I 410 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~ 410 (1131)
.+.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++....... ........+.+|. .
T Consensus 24 ~~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~ 94 (447)
T 3dw8_B 24 DVAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEE 94 (447)
T ss_dssp CCCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECC
T ss_pred cccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccC
Confidence 356789999999999998 699999999999999998763210000 0000112467888 8
Q ss_pred CEEEEEEcCCC--CEEEEEeCCCeEEEEEecCCCccc------------------------------------eeee-ee
Q 001178 411 SVSRVAWSPDG--NFIGVAFTKHLIHLYTYQGSNDLC------------------------------------QSLE-ID 451 (1131)
Q Consensus 411 ~V~~~~~spdg--~~las~~~d~~i~vwd~~~~~~~~------------------------------------~~~~-~~ 451 (1131)
.|.+++|+|++ .+|++++.|++|++||+.++.... .... ..
T Consensus 95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 89999999998 799999999999999998743210 0011 36
Q ss_pred cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCC--CceeE-------EecCCccCeEEEeecccCCccEEEEEecCCe
Q 001178 452 AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS--GRKLF-------QFEGHEAPVYSVCPHQKENIHFIFSTAVDGK 522 (1131)
Q Consensus 452 ~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~--~~~~~-------~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~ 522 (1131)
+|...|.+++|+|+++ +|++| .|+.|++||.. ++.+. .+.+|...|.+++|+|.. ..+|++++.||.
T Consensus 175 ~h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg~ 250 (447)
T 3dw8_B 175 AHTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNS-CNTFVYSSSKGT 250 (447)
T ss_dssp CCSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSC-TTEEEEEETTSC
T ss_pred CCCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCC-CcEEEEEeCCCe
Confidence 7999999999999999 78888 79999999943 44444 366899999999997542 179999999999
Q ss_pred EEEEeCCCCce----eEEecCCCc------------eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC-CeeeEEEec
Q 001178 523 IKAWLYDNVGS----RVDYDAPGL------------WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYIG 585 (1131)
Q Consensus 523 i~~wd~~~~~~----~~~~~~~~~------------~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~ 585 (1131)
|++||+++... ...+..+.. .|.+++|+|+|++|++++ ++.|++||+++ ++.+..+.+
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~ 325 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQV 325 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEES
T ss_pred EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeec
Confidence 99999998876 567777765 899999999999999886 48999999997 888888887
Q ss_pred ccCCc--------------eEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc----------------------
Q 001178 586 FRKKS--------------AGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE---------------------- 629 (1131)
Q Consensus 586 ~~~~~--------------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------- 629 (1131)
|.... +..++|+|++++|++++.||.|++||+.+++.+......
T Consensus 326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (447)
T 3dw8_B 326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKK 405 (447)
T ss_dssp CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccc
Confidence 64310 223899999999999999999999999998876422111
Q ss_pred --------CCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 630 --------GGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 630 --------~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
.....|..++|+|++++|++++.++ +.+|..
T Consensus 406 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 406 DEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1223678899999999999998775 777764
No 88
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=310.92 Aligned_cols=224 Identities=9% Similarity=0.041 Sum_probs=180.6
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCC
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~ 486 (1131)
.-...|.+++|||||+++|+++.|++|+ |.+.++ .+.+|...|.+++|+|+| .++.+.+|+..
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~ 75 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQ 75 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCC
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCC
Confidence 4467899999999999999999999999 755544 346899999999999998 37777777755
Q ss_pred CceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCc-----eEEEEEEccCCCEEEEEee
Q 001178 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-----WCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~ 561 (1131)
+..+..+ .|...|.+++|+| +|..|++++.||.|++||.+. ....+. +.. .+.+++|+|||++|++++.
T Consensus 76 ~~~~~~~-~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 76 QNGLLNS-QPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp SSCSSTT-SCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred CceEeec-CCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 5454444 4588999999965 668999999999999999544 333444 444 4999999999999999987
Q ss_pred cCCCCceEEEEeCCCCee-------eEEE----ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeE---EEEEe
Q 001178 562 SKEGDSHLVEWNESEGAL-------KRTY----IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM---LTSTE 627 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~-------~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~ 627 (1131)
||+|++||+.++.. +.++ .+| ...|.+++|+|+| +++++.|++|++||+.++.. ...+.
T Consensus 150 ----DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh-~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 150 ----DGELQFFSIRKNSENTPEFYFESSIRLSDAGS-KDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp ----TSEEEEEECCCCTTTCCCCEEEEEEECSCTTC-CCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred ----CCEEEEEECCCCccccccceeeeeeecccccc-cccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence 99999999998753 5666 443 3589999999998 88999999999999988773 24443
Q ss_pred ccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 628 AEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 628 ~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
. .+...|.+++|+ |..+++++ ++.|++|++.++
T Consensus 223 ~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 223 N-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp C-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred c-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence 2 233479999999 68898887 699999998765
No 89
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1e-30 Score=301.63 Aligned_cols=300 Identities=16% Similarity=0.172 Sum_probs=239.3
Q ss_pred cCCCcEEEEEEec-CCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCC
Q 001178 345 HQGSSVVSMDFHP-FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGN 422 (1131)
Q Consensus 345 ~h~~~V~~~~fsp-dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~ 422 (1131)
.|.+.|++++|+| +++ +||+|+.||.|+|||+.+++.......... .........+|...|.+++|+| ++.
T Consensus 41 ~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp CCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred ccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEEEccCCCc
Confidence 4999999999999 998 699999999999999998876543111000 0000112347999999999999 788
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC---CCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP---NKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d---~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
+|++++.|+.|++||+.+++... . ..+...+.+++|++. +. ++++++.|+.|++|| .+++.+..+.+|..
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 187 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTAD---V-FNFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSHILQGHRQ 187 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEE---E-EECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCEEECCCCS
T ss_pred EEEEEeCCCeEEEeeCCCCccce---e-ccCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceeeeecCCCC
Confidence 99999999999999999876543 2 237788999999984 44 799999999999999 78888999999999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee-EEe---------------cCCCceEEEEEEccCCCEEEEEeec
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDY---------------DAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~---------------~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.|.+++|++... .++++++.||.|++||++..... ..+ ..+...|.+++|+|++++|++++.
T Consensus 188 ~v~~~~~~~~~~-~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 265 (408)
T 4a11_B 188 EILAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT- 265 (408)
T ss_dssp CEEEEEECSSCT-TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET-
T ss_pred cEEEEEECCCCC-cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC-
Confidence 999999976432 36899999999999999876532 222 456778999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccC----CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRK----KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
++.|++||+.+++....+..+.. ..+........+..+++++.++.|++||+.+++.+..+..+.. .|.++
T Consensus 266 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~v~~~ 340 (408)
T 4a11_B 266 ---DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK--TVDCC 340 (408)
T ss_dssp ---TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS--CEEEE
T ss_pred ---CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC--eEEEE
Confidence 89999999998876554432211 1122222334456777888899999999999999998876554 89999
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|+|++++|++++.||.|++|++.++
T Consensus 341 ~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 341 VFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEETTTTEEEEEETTSCEEEEEECC-
T ss_pred EEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 99999999999999999999999887
No 90
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.2e-32 Score=306.74 Aligned_cols=245 Identities=13% Similarity=0.157 Sum_probs=194.5
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
+...|.+++|+|+|.+|++++.|+.+++|++..... .... ...+|...|.+++|+|++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~--------------------~~~~--~~~~h~~~v~~~~~s~~~ 67 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW--------------------KHAR--TFSDHDKIVTCVDWAPKS 67 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE--------------------EECC--CBCCCSSCEEEEEECTTT
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce--------------------EEEE--EEecCCceEEEEEEeCCC
Confidence 557899999999999999999999999999764310 0000 112589999999999999
Q ss_pred CEEEEEe-CCeEEEEECCCce---eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce---eEEeecc-cc
Q 001178 846 SYVMSAG-GGKVSLFNMMNFK---VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE---VKTKLKG-HQ 917 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~~~~~---~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~---~~~~~~~-h~ 917 (1131)
++|++++ |++|++||+.+++ ....+..|...|.+++|+| ++++|++|+.|+.|++||+.+++ ....+.+ |.
T Consensus 68 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~ 146 (377)
T 3dwl_C 68 NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLR 146 (377)
T ss_dssp CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCC
T ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccC
Confidence 9999999 8999999999877 6777888999999999999 89999999999999999999887 4677777 99
Q ss_pred cCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee-------------eeeeeecCCCCCCCCceEEEEcCCCcEEEEE-
Q 001178 918 KHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR-------------KSIAIQLPAGKLPVGETRVQFHSDQVRLLVN- 983 (1131)
Q Consensus 918 ~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~-------------~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~- 983 (1131)
+.|++++|+|++++|++++.|+.|++||+...+.. ........ .+...+.+++|+|++++|+++
T Consensus 147 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 147 STILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp SCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEE
T ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEe
Confidence 99999999999999999999999999999643211 11122222 344789999999999999986
Q ss_pred eCCeEEEEeCCCccc----ceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 984 HETQLAIYDGSKMEC----IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 984 ~d~~i~vwd~~~~~~----~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
.|+.|++||+.+++. +..+..| ...|++++|+|||++|++++.|+.+ +|+..
T Consensus 225 ~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 225 HDSSVTIAYPSAPEQPPRALITVKLS---QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp TTTEEC-CEECSTTSCEEECCCEECS---SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCcEEEEECCCCCCcceeeEeecCC---CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 589999999999987 6777666 7899999999999999999865555 67665
No 91
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.3e-31 Score=296.83 Aligned_cols=252 Identities=14% Similarity=0.203 Sum_probs=207.1
Q ss_pred eeccCCCCCEEEEEEcCCCCEE-EEEeC---CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC---CCceEEEEEc
Q 001178 403 AIVKDSSISVSRVAWSPDGNFI-GVAFT---KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP---NKQLCIVTCG 475 (1131)
Q Consensus 403 ~~~~~h~~~V~~~~~spdg~~l-as~~~---d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d---~~~~~l~s~s 475 (1131)
.++.+|...|.+++|+|++..+ ++|+. |+.|++||+.+++.... ...+|...|.+++|+|+ ++ +|++|+
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence 3567899999999999999655 55655 89999999998764321 23479999999999999 57 799999
Q ss_pred CCCcEEEEe-CCCc-eeEEecCCccCeEEEeecc----cCCccEEEEEecCCeEEEEeCCCCc-eeEEecCCCc----eE
Q 001178 476 DDKLIRVWD-LSGR-KLFQFEGHEAPVYSVCPHQ----KENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGL----WC 544 (1131)
Q Consensus 476 ~d~~i~iwd-~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~----~v 544 (1131)
.|+.|++|| .+++ .+..+.+|...|.+++|.+ ++++.+|++++.||.|++||+++.. ....+..+.. .+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 999999999 6666 7889999999999997743 5677899999999999999999876 5556654433 78
Q ss_pred EEEE----EccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC---CCCEEEEEEcCCcEEEEEc
Q 001178 545 TTML----YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT---TRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 545 ~~~~----~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~ 617 (1131)
.++. |+|+++++++++. ++.|++||+++++..... .+ ...+.+++|+| +++++++++.||.|++||+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWET-NI-KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEEE-EC-SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeeec-CC-CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 8888 7889999999986 899999999999875543 33 44899999999 8999999999999999999
Q ss_pred CCCeEEEEEe---ccCCCCCcceEEEcCCCC-EEEEEECCCcEEEEecCCC
Q 001178 618 DNVNMLTSTE---AEGGLPSLPRLRFNKEGN-LLVVTTADQGIKILANADG 664 (1131)
Q Consensus 618 ~~~~~~~~~~---~~~~~~~i~~v~~sp~~~-~l~~~~~dg~i~iw~~~~~ 664 (1131)
.+++....+. ...+...|.+++|+|+++ ++++++.||.|++|++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 8766544332 123445899999999998 8999999999999998765
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-30 Score=285.54 Aligned_cols=239 Identities=15% Similarity=0.227 Sum_probs=210.8
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|.+.|.+++| |++++|++|+.||.|++||+.+++.. ..+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLG---TVVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEE---EEEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEE---EEeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 57899999999999 99999999999999999999886543 35678999999999999999 89999999999999
Q ss_pred e-CC---CceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc-CCCEEEE
Q 001178 484 D-LS---GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSRLFS 558 (1131)
Q Consensus 484 d-~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~ 558 (1131)
+ .. ++.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.++.+.| +++++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9 32 3567888999999999998 236899999999999999 5666777888899999999998 9999999
Q ss_pred EeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 559 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
++. ++.|++|| .++....+...+...+.+++|+|++. +++++.||.|++||+.+++.+..+..+.. .|.++
T Consensus 161 ~~~----d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~ 231 (313)
T 3odt_A 161 ASA----DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES--FVYCI 231 (313)
T ss_dssp EET----TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEC----CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc--eEEEE
Confidence 986 89999999 56777788875666899999999987 99999999999999999999988876554 89999
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|+|++ .+++++.||.|++||+.++
T Consensus 232 ~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 232 KLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EEecCC-CEEEEecCCEEEEEECCCC
Confidence 999999 5889999999999998765
No 93
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.98 E-value=1.8e-30 Score=291.60 Aligned_cols=280 Identities=11% Similarity=0.116 Sum_probs=236.4
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC-E
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-F 423 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~-~ 423 (1131)
.|.+.|++++|+|+++ +|++|+.||.|+|||+.+++... ....+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNV----------------DLLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEE----------------EEEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccc----------------cceeeeecCCceEEEEECCCCCcE
Confidence 4999999999999998 58999999999999998876211 0012448999999999999999 9
Q ss_pred EEEEeCCCeEEEEEe-cCCCccceeeeeec--CcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CC---------Ccee
Q 001178 424 IGVAFTKHLIHLYTY-QGSNDLCQSLEIDA--HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LS---------GRKL 490 (1131)
Q Consensus 424 las~~~d~~i~vwd~-~~~~~~~~~~~~~~--h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~---------~~~~ 490 (1131)
|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++|| .+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 87653 35778 999999999999 77 899999999999999 55 6666
Q ss_pred EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCC-Cce--eEEecCCCceEEEEEEcc-CCCEEEEEeecCCCC
Q 001178 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGS--RVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGD 566 (1131)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~ 566 (1131)
..+. |...|.+++|++ + .+++++.|+.|++||++. ... ......+...+.+++|+| +++++++++. +
T Consensus 145 ~~~~-~~~~v~~~~~~~--~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----d 215 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--S--RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----D 215 (342)
T ss_dssp SSSS-SCCCEEEEEECS--S--EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----T
T ss_pred eEEe-eCCceEEEEecC--C--cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----C
Confidence 6666 889999999964 3 299999999999999988 443 334456677899999999 9999999986 8
Q ss_pred ceEEEEeCCCC------eeeEEEecccC--------CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCC
Q 001178 567 SHLVEWNESEG------ALKRTYIGFRK--------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1131)
Q Consensus 567 ~~i~iwd~~~~------~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1131)
+.|++|+.... +....+..|.. ..+.+++|+|++++|++++.||.|++||+.+++.+..+..+. .
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-~ 294 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-E 294 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-S
T ss_pred CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc-C
Confidence 99999999877 77788887642 379999999999999999999999999999999988876550 3
Q ss_pred CCcceEEEcCCCCEEEEEECCCc-EEEEe
Q 001178 633 PSLPRLRFNKEGNLLVVTTADQG-IKILA 660 (1131)
Q Consensus 633 ~~i~~v~~sp~~~~l~~~~~dg~-i~iw~ 660 (1131)
..|.+++ |++++|++++.||. .+.+.
T Consensus 295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 295 DSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CCceEec--CCCCeEEEEecCCccccccc
Confidence 3788888 99999999999998 44333
No 94
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=3.1e-30 Score=299.77 Aligned_cols=272 Identities=23% Similarity=0.330 Sum_probs=235.4
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+|...|+|++| +++ ++++|+.||.|++||+.+++... .+.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence 47788999888 676 59999999999999999887664 46799999999999 88999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCcee---EEecCCccCe
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL---FQFEGHEAPV 500 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~---~~~~~h~~~v 500 (1131)
++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++|| .++..+ ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999987554 6789999999999974 4 799999999999999 555554 6778999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
.++++ ++.++++++.||.|++||+++......+..|...|.++.+ +++++++++. ++.|++||+++++.+
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACL 329 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEE
Confidence 99998 4479999999999999999999999999999999999998 4789999986 899999999999999
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe---------EEEEEeccCCCCCcceEEEcCCCCEEEEEE
Q 001178 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN---------MLTSTEAEGGLPSLPRLRFNKEGNLLVVTT 651 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~ 651 (1131)
..+.+|.. .+.+++| ++.++++|+.||.|++||+.++. .+..+..|. ..|.+++| ++.++++++
T Consensus 330 ~~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 330 RVLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp EEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEE--CSSCEEECC
T ss_pred EEEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC--CCeEEEEe--CCCEEEEEe
Confidence 99998765 8998888 78899999999999999997665 666666554 48999999 678899999
Q ss_pred CCCcEEEEecCCC
Q 001178 652 ADQGIKILANADG 664 (1131)
Q Consensus 652 ~dg~i~iw~~~~~ 664 (1131)
.||.|++||+.+.
T Consensus 403 ~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 403 HDDTILIWDFLND 415 (435)
T ss_dssp SSSEEEEEC----
T ss_pred CCCEEEEEECCCC
Confidence 9999999999776
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=4.4e-31 Score=291.88 Aligned_cols=249 Identities=16% Similarity=0.238 Sum_probs=203.5
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC--CCC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~ 422 (1131)
+|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+| +++
T Consensus 11 ~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~-----------------~~~l~gH~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQIL-----------------IADLRGHEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp ---CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEE-----------------EEEEECCSSCEEEEEECCGGGSS
T ss_pred cccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEE-----------------EEEEcCCCccEEEEEeCCCCCCC
Confidence 5999999999999998 59999999999999998765321 114679999999999986 489
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-CCCce---eEEecCC
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSGRK---LFQFEGH 496 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~~~---~~~~~~h 496 (1131)
+||+|+.|++|++||++++.. .....+.+|...|.+++|+|+ +. +|++|+.|++|++|| ..+.. ...+.+|
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTW-EKSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCC-CEEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred EEEEEECCCEEEEEECCCCcc-eEEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 999999999999999988642 233467899999999999998 56 799999999999999 44322 3556789
Q ss_pred ccCeEEEeecccC---------------CccEEEEEecCCeEEEEeCCCC---ceeEEecCCCceEEEEEEccCC----C
Q 001178 497 EAPVYSVCPHQKE---------------NIHFIFSTAVDGKIKAWLYDNV---GSRVDYDAPGLWCTTMLYSADG----S 554 (1131)
Q Consensus 497 ~~~v~~~~~~~~~---------------~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~g----~ 554 (1131)
...|.+++|+|.. ++.+|++++.|+.|++||++.. .....+..|...|.+++|+|++ .
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence 9999999998752 1468999999999999999754 2445677888999999999987 8
Q ss_pred EEEEEeecCCCCceEEEEeCCCC---e-eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 555 RLFSCGTSKEGDSHLVEWNESEG---A-LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~~---~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
+|++++. |+.|++|++.+. . ....+..| ...+.+++|+|++++|++++.|+.|++|+...
T Consensus 230 ~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 230 TIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEEET----TCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred eEEEEcC----CCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 8999986 999999998762 1 12334444 44899999999999999999999999999763
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=3.6e-31 Score=292.54 Aligned_cols=249 Identities=16% Similarity=0.301 Sum_probs=203.5
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~ 481 (1131)
++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|++++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 57799999999999999999999999999999999886532 23468899999999999864 66 799999999999
Q ss_pred EEe-CCC--ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce---eEEecCCCceEEEEEEccC---
Q 001178 482 VWD-LSG--RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSAD--- 552 (1131)
Q Consensus 482 iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 552 (1131)
+|| .++ ..+..+.+|...|.+++|+|..++.+|++++.|+.|++||++.... ...+..|...|.++.|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 999 555 4667788999999999998876678999999999999999987532 2344567778999999997
Q ss_pred --------------CCEEEEEeecCCCCceEEEEeCCCC---eeeEEEecccCCceEEEEEeCCC----CEEEEEEcCCc
Q 001178 553 --------------GSRLFSCGTSKEGDSHLVEWNESEG---ALKRTYIGFRKKSAGVVQFDTTR----NRILAAGEDNQ 611 (1131)
Q Consensus 553 --------------g~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~ 611 (1131)
+++|++++. |+.|++||.+.+ +.+..+.+|.. .|.+++|+|++ .+|++++.|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 468888876 899999999755 45666777665 89999999986 78999999999
Q ss_pred EEEEEcCCC---e-EEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 612 IKFWDMDNV---N-MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 612 i~iwd~~~~---~-~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|+.|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999998762 1 11223333 3479999999999999999999999999975
No 97
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.7e-30 Score=298.79 Aligned_cols=295 Identities=14% Similarity=0.193 Sum_probs=240.2
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCEEEEE
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFIGVA 427 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~las~ 427 (1131)
....++++|+...++++|+.||.|+|||+........ ....+.+|.+.|.+++|+| ++++||+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 4557899999876677789999999999965433210 1114679999999999999 99999999
Q ss_pred eCCCeEEEEEecCCCcc----ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe--cCCccCe
Q 001178 428 FTKHLIHLYTYQGSNDL----CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF--EGHEAPV 500 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~--~~h~~~v 500 (1131)
+.||+|++||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++|| .+++.+..+ .+|...|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987421 233468899999999999999843 799999999999999 888888888 8899999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe-cCCCce-EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-DAPGLW-CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
.+++|++ ++.+|++++.||.|++||+++......+ ..+... +.++.|+|++++++++. +...++.|++||+.+++
T Consensus 180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF-SRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE-CTTCCEEEEEEETTBCS
T ss_pred EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec-cCCCCceEEEEcCcccc
Confidence 9999976 5689999999999999999998888777 566654 89999999999998883 11238999999998866
Q ss_pred e-eEEEecccCCceEEEEEeCCCCEEEE-EEcCCcEEEEEcCCCeE-EEEEeccCCCCCcceEEEcCCCCEEEEEECCCc
Q 001178 579 L-KRTYIGFRKKSAGVVQFDTTRNRILA-AGEDNQIKFWDMDNVNM-LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1131)
Q Consensus 579 ~-~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~ 655 (1131)
. +......+...+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++.
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~ 334 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI 334 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee
Confidence 4 44444334447999999999999875 45799999999998874 555555545558999999999988764 5679
Q ss_pred EEEEecCCC
Q 001178 656 IKILANADG 664 (1131)
Q Consensus 656 i~iw~~~~~ 664 (1131)
+++|++.++
T Consensus 335 ~~~~~l~~~ 343 (402)
T 2aq5_A 335 ARFYKLHER 343 (402)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 999999775
No 98
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=6.3e-30 Score=290.44 Aligned_cols=289 Identities=16% Similarity=0.233 Sum_probs=237.4
Q ss_pred ccceeeec-cCCCcEEEEEEecC---CCcEEEEEcCCCeEEEEECCC-CcccccccceeecccccccceeceeccCCCCC
Q 001178 337 PRAVACTM-HQGSSVVSMDFHPF---HHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQAAIVKDSSIS 411 (1131)
Q Consensus 337 ~~~~~~~~-~h~~~V~~~~fspd---g~~llasg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 411 (1131)
+...+..+ .|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ ++.+. ..+.+|...
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~------------------~~~~~h~~~ 88 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIP------------------KAQQMHTGP 88 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEE------------------EEEEECSSC
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeE------------------EEeccccCC
Confidence 34455555 49999999999999 46 699999999999999987 43331 146789999
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEE--ecCCCceEEEEEcCCCcEEEEe-CCCc
Q 001178 412 VSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF--SYPNKQLCIVTCGDDKLIRVWD-LSGR 488 (1131)
Q Consensus 412 V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~--s~d~~~~~l~s~s~d~~i~iwd-~~~~ 488 (1131)
|.+++|+|++++|++++.||.|++||+.+++.. .+.+|...|.+++| ++++. +|++++.|+.|++|| .+++
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI----QIAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEE----EEEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce----eeccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence 999999999999999999999999999987644 35679999999999 88887 899999999999999 7888
Q ss_pred eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec--CCCceEEEEEEccCCCE----EEEEeec
Q 001178 489 KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD--APGLWCTTMLYSADGSR----LFSCGTS 562 (1131)
Q Consensus 489 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~----l~~~~~~ 562 (1131)
.+..+..+. .+.++.+.. ..+++++.++.+++|+++......... .....+.++.+.++... +++++.
T Consensus 163 ~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 236 (368)
T 3mmy_A 163 PMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI- 236 (368)
T ss_dssp CSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET-
T ss_pred EEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC-
Confidence 888888665 566666542 478899999999999998776554332 23345667777666554 888876
Q ss_pred CCCCceEEEEeCCCC---eeeEEEecccCC-----------ceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec
Q 001178 563 KEGDSHLVEWNESEG---ALKRTYIGFRKK-----------SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~---~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
++.|++|++... ..+..+.+|... .+.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 237 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 237 ---EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp ---TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 999999999887 567777776543 599999999999999999999999999999999888875
Q ss_pred cCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 629 EGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 629 ~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
+.. .|.+++|+|++++|++++.|+..+.|++
T Consensus 314 ~~~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 314 LDQ--PISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CSS--CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CCC--CceEEEECCCCCeEEEEecccccccccc
Confidence 544 8999999999999999999886555544
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=7.6e-29 Score=286.42 Aligned_cols=285 Identities=16% Similarity=0.247 Sum_probs=232.1
Q ss_pred ccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCC
Q 001178 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1131)
...+..++||+++ +++.+.|++|++||..+ |......-..+|...|++++|+|||+
T Consensus 105 d~y~~~l~wS~~n--~lAvgld~tV~lWd~~t----------------------g~~~~~~~~~~~~~~V~sv~fspdg~ 160 (420)
T 4gga_A 105 DYYLNLVDWSSGN--VLAVALDNSVYLWSASS----------------------GDILQLLQMEQPGEYISSVAWIKEGN 160 (420)
T ss_dssp CTTCBCEEECTTS--EEEEEETTEEEEEETTT----------------------CCEEEEEECCSTTCCEEEEEECTTSS
T ss_pred cccceeEEECCCC--EEEEEeCCEEEEEECCC----------------------CCEEEEEEecCCCCcEEEEEECCCCC
Confidence 3456679999764 45556699998887654 32222111225788999999999999
Q ss_pred EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc-eeEEeecccccCeeEEE
Q 001178 847 YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-EVKTKLKGHQKHITGLA 924 (1131)
Q Consensus 847 ~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~ 924 (1131)
+|++|+ ||+|+|||+.+++++..+.+|...+.+++++ +.+|++|+.|+.+++||.... ..+..+.+|...+..+.
T Consensus 161 ~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 161 YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237 (420)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred EEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence 999999 8999999999999999999999999988875 579999999999999998764 55678899999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEE-EE---eCCeEEEEeCCCcccce
Q 001178 925 FSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL-VN---HETQLAIYDGSKMECIR 1000 (1131)
Q Consensus 925 ~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~-~~---~d~~i~vwd~~~~~~~~ 1000 (1131)
|+|+++++++++.|+.+++|+..+++.......... .+...|..++|+|++..++ ++ .|+.|++||+.++++..
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~--~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC--CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred ecCCCCeeeeeeccccceEEeeccccccceeeeeec--ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 999999999999999999999988664332222221 2337899999999776544 43 38999999999999988
Q ss_pred eeecCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCe
Q 001178 1001 QWVPQDVLSSPISSAAYSCNSQLIYATF--TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQ 1078 (1131)
Q Consensus 1001 ~~~~~~~~~~~v~~i~~s~dg~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~ 1078 (1131)
.+..+ ..+.++.|+++++.+++++ .|+.|+|||+.+++.+..+.+| .+.|. +++|+| ++.+
T Consensus 316 ~~~~~----~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH----------~~~V~--~l~~sp-dg~~ 378 (420)
T 4gga_A 316 AVDAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH----------TSRVL--SLTMSP-DGAT 378 (420)
T ss_dssp EEECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC----------SSCEE--EEEECT-TSSC
T ss_pred eeccc----cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC----------CCCEE--EEEEcC-CCCE
Confidence 87765 5899999999999988876 7899999999999999888753 33344 788999 6789
Q ss_pred EEEEecCCcEEEEecCCCc
Q 001178 1079 LAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1079 l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
|+||+.|++|+|||+.+.+
T Consensus 379 l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 379 VASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEETTTEEEEECCSCSS
T ss_pred EEEEecCCeEEEEECCCCC
Confidence 9999999999999997654
No 100
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2e-29 Score=289.44 Aligned_cols=284 Identities=16% Similarity=0.180 Sum_probs=235.9
Q ss_pred CCCCC--EEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 407 DSSIS--VSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 407 ~h~~~--V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+|... +.+++|++ ..+++++.|+.|++||+.+++..... ...|...|++++|+|+++ +|++|+.||.|++||
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYD 162 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEE
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEE
Confidence 55554 44566654 56888889999999999998754321 223889999999999999 899999999999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCC-CceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.+++.+..+.+|...|.+++|+ +.++++++.||.|++||++. ......+..|...|.+++|+|++++|++++.
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~- 237 (401)
T 4aez_A 163 VESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN- 237 (401)
T ss_dssp TTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred CcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC-
Confidence 8889999999999999999983 36999999999999999984 5556678889999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCC-EEEEEE--cCCcEEEEEcCCCeEEEEEeccCCCCCcceEE
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-RILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1131)
++.|++||+++++.+..+..|.. .+.+++|+|++. .+++++ .|+.|++||+.+++.+..+..+. .|.+++
T Consensus 238 ---d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~---~v~~~~ 310 (401)
T 4aez_A 238 ---DNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS---QVTSLI 310 (401)
T ss_dssp ---TSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS---CEEEEE
T ss_pred ---CCeEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC---cEEEEE
Confidence 89999999999999988887655 899999999775 555554 69999999999999988886433 699999
Q ss_pred EcCCCCEEEEEE--CCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcccc
Q 001178 640 FNKEGNLLVVTT--ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTI 717 (1131)
Q Consensus 640 ~sp~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~ 717 (1131)
|+|+++++++++ .||.|++|++.++.. .
T Consensus 311 ~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-~------------------------------------------------- 340 (401)
T 4aez_A 311 WSPHSKEIMSTHGFPDNNLSIWSYSSSGL-T------------------------------------------------- 340 (401)
T ss_dssp ECSSSSEEEEEECTTTCEEEEEEEETTEE-E-------------------------------------------------
T ss_pred ECCCCCeEEEEeecCCCcEEEEecCCccc-e-------------------------------------------------
Confidence 999999999954 899999999865410 0
Q ss_pred ccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeec
Q 001178 718 LNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWN 797 (1131)
Q Consensus 718 l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~ 797 (1131)
.. ..+ ..|...|.+++|+|+|..|++++.||.+++|++.
T Consensus 341 ------------------------~~--------------~~~---~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 341 ------------------------KQ--------------VDI---PAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp ------------------------EE--------------EEE---ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred ------------------------eE--------------EEe---cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 00 001 1277889999999999999999999999999876
Q ss_pred CC
Q 001178 798 RT 799 (1131)
Q Consensus 798 ~~ 799 (1131)
.+
T Consensus 380 ~~ 381 (401)
T 4aez_A 380 DG 381 (401)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=7.6e-29 Score=279.13 Aligned_cols=260 Identities=12% Similarity=0.163 Sum_probs=217.0
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC--CCC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~ 422 (1131)
+|.+.|++++|+|+|+ +||+|+.||.|+|||+.++..... ....+.+|...|.+++|+| |++
T Consensus 9 gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d~~ 72 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEYGR 72 (351)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGGCS
T ss_pred ccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCCCC
Confidence 5999999999999998 599999999999999987653211 1124678999999999999 699
Q ss_pred EEEEEeCCCeEEEEEecCCCcc------ceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-CCCceeEEe
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDL------CQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSGRKLFQF 493 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~------~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~~~~~~~ 493 (1131)
+|++|+.||.|++||+.++... .....+.+|...|.+++|+|+ +. ++++++.|+.|++|| .+++.+..+
T Consensus 73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCC
T ss_pred EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhccc
Confidence 9999999999999999886421 334567889999999999999 88 899999999999999 666654433
Q ss_pred c-------------CCccCeEEEeeccc-CCccEEEEEecCCeEEEEeCCCCce--eEEecCCCceEEEEEEccCC----
Q 001178 494 E-------------GHEAPVYSVCPHQK-ENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSADG---- 553 (1131)
Q Consensus 494 ~-------------~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g---- 553 (1131)
. +|...+.+++|+|. .++..+++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence 2 68889999999875 1357999999999998888777665 45667788899999999998
Q ss_pred CEEEEEeecCCCCceEEEEeCCCC----------------------------------------------eeeEEEeccc
Q 001178 554 SRLFSCGTSKEGDSHLVEWNESEG----------------------------------------------ALKRTYIGFR 587 (1131)
Q Consensus 554 ~~l~~~~~~~~~~~~i~iwd~~~~----------------------------------------------~~~~~~~~~~ 587 (1131)
++|++++. |+.|++||+.++ +.+..+.+|.
T Consensus 231 ~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 231 QLIATGCK----DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp EEEEEEET----TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred eEEEEEcC----CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence 78999886 899999998765 5666677765
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEe
Q 001178 588 KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1131)
Q Consensus 588 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1131)
. .|.+++|+|++++|++++.||.|++|++.+++....+.
T Consensus 307 ~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 307 G-EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp S-CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred c-cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 5 89999999999999999999999999999876655443
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=7.1e-29 Score=290.17 Aligned_cols=248 Identities=12% Similarity=0.182 Sum_probs=204.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCc--------cceeeeeecCc------------CCeeEEEEecCC
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND--------LCQSLEIDAHV------------GGVNDLAFSYPN 466 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~--------~~~~~~~~~h~------------~~V~~l~~s~d~ 466 (1131)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4678999999999999999999999999999987652 11344678998 889999999998
Q ss_pred --CceEEEEEcCCCcEEEEe-CCCcee---------------------------------------EE-ecCCccCeEEE
Q 001178 467 --KQLCIVTCGDDKLIRVWD-LSGRKL---------------------------------------FQ-FEGHEAPVYSV 503 (1131)
Q Consensus 467 --~~~~l~s~s~d~~i~iwd-~~~~~~---------------------------------------~~-~~~h~~~v~~~ 503 (1131)
. .|++++.|++|++|| .++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 799999999999999 432221 12 36899999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEE--------ecCCCceEEEEEEccCC-CEEEEEeecCCCCceEEEEeC
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD--------YDAPGLWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--------~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
+|++ ++++|+++ .|+.|++||++....... +..|...|.+++|+|++ ++|++++. ++.|++||+
T Consensus 184 ~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 9976 56799998 799999999985444333 45678899999999999 99999986 899999999
Q ss_pred CCCee----eEEEecccC-----------CceEEEEEeCCCCEEEEEEcCCcEEEEEcCC-CeEEEEEeccCCCCC----
Q 001178 575 SEGAL----KRTYIGFRK-----------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDN-VNMLTSTEAEGGLPS---- 634 (1131)
Q Consensus 575 ~~~~~----~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 634 (1131)
++++. +..+..+.. ..+.+++|+|++++|++++. +.|++||+.+ ++.+..+..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 778877654 27999999999999999999 9999999997 777777776642111
Q ss_pred ---------cceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 635 ---------LPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 635 ---------i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+..++|+|++++|++++.||.|++||+.++
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 234999999999999999999999999887
No 103
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=4.7e-28 Score=268.73 Aligned_cols=282 Identities=16% Similarity=0.255 Sum_probs=228.1
Q ss_pred eEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEE
Q 001178 770 VARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVM 849 (1131)
Q Consensus 770 i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 849 (1131)
...++||+++ +++++.|++|++||+.+ |+.+......+|...|.+++|+|++++|+
T Consensus 28 ~~~l~WS~~~--~lAvg~D~tV~iWd~~t----------------------g~~~~~~~~~~~~~~V~~v~~~~~~~~l~ 83 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVALDNSVYLWSASS----------------------GDILQLLQMEQPGEYISSVAWIKEGNYLA 83 (318)
T ss_dssp CBCEEECTTS--EEEEEETTEEEEEETTT----------------------CCEEEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred ceEEEECCCC--EEEEEeCCEEEEEECCC----------------------CCEEEEEEecCCCCeEEEEEECCCCCEEE
Confidence 4678999886 45556799998887654 32222111225788999999999999999
Q ss_pred EEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc-eeEEeecccccCeeEEEEcc
Q 001178 850 SAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-EVKTKLKGHQKHITGLAFST 927 (1131)
Q Consensus 850 ~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~s~ 927 (1131)
+|+ ||+|++||+.+++++..+.+|...+.++.+ ++.++++|+.++.+++|+.... ..+..+.+|...+..+.+++
T Consensus 84 sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred EEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 999 899999999999999999999988877666 4579999999999999998865 55677899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE---E-eCCeEEEEeCCCcccceeee
Q 001178 928 NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV---N-HETQLAIYDGSKMECIRQWV 1003 (1131)
Q Consensus 928 dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~---~-~d~~i~vwd~~~~~~~~~~~ 1003 (1131)
++++|++++.|++|++||+.+++.......... .+...+..++++|++..++. + .++.|++|+...........
T Consensus 161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~ 238 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 238 (318)
T ss_dssp TSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC--CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEEecCcceeEEECCCCcccccceeeec--ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc
Confidence 999999999999999999998764333322222 22367899999998775543 2 37899999999887766544
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEE
Q 001178 1004 PQDVLSSPISSAAYSCNSQLIYATF--TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAV 1081 (1131)
Q Consensus 1004 ~~~~~~~~v~~i~~s~dg~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s 1081 (1131)
. ...+..++|+++++.+++++ .|+.|++||+.+++.+..+.+| .+.|. +++|+| ++.+|+|
T Consensus 239 ~----~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH----------~~~V~--~l~~sp-dg~~l~S 301 (318)
T 4ggc_A 239 A----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH----------TSRVL--SLTMSP-DGATVAS 301 (318)
T ss_dssp C----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC----------SSCEE--EEEECT-TSSCEEE
T ss_pred c----eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC----------CCCEE--EEEEcC-CCCEEEE
Confidence 3 56899999999999888765 7999999999999999888753 34444 688999 6789999
Q ss_pred EecCCcEEEEecCCCc
Q 001178 1082 GLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1082 ~~~Dg~v~iW~~~~~~ 1097 (1131)
||.||+|+|||+.+.+
T Consensus 302 ~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 302 AAADETLRLWRCFELD 317 (318)
T ss_dssp EETTTEEEEECCSCCC
T ss_pred EecCCeEEEEECCCCC
Confidence 9999999999997654
No 104
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=8.5e-29 Score=278.74 Aligned_cols=252 Identities=12% Similarity=0.167 Sum_probs=212.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCcc-ceeeeeecCcCCeeEEEEec--CCCceEEEEEcCCCcE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSY--PNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~V~~l~~s~--d~~~~~l~s~s~d~~i 480 (1131)
++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|++++|+| |++ +|++++.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 67899999999999999999999999999999999876432 33456789999999999999 577 89999999999
Q ss_pred EEEe-CCC---------ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec------------
Q 001178 481 RVWD-LSG---------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD------------ 538 (1131)
Q Consensus 481 ~iwd-~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~------------ 538 (1131)
++|| ..+ +.+..+.+|...|.+++|++..++.++++++.||.|++||+++......+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 9999 554 557888899999999999876436899999999999999998766443221
Q ss_pred -CCCceEEEEEEccC---CCEEEEEeecCCCCceEEEEeCCCCee--eEEEecccCCceEEEEEeCCC----CEEEEEEc
Q 001178 539 -APGLWCTTMLYSAD---GSRLFSCGTSKEGDSHLVEWNESEGAL--KRTYIGFRKKSAGVVQFDTTR----NRILAAGE 608 (1131)
Q Consensus 539 -~~~~~v~~~~~s~~---g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~ 608 (1131)
.+...+.++.|+|+ +.++++++. ++.+.+|+...++. +..+.+|.. .|.+++|+|++ ++|++++.
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEET
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcC
Confidence 45668999999997 899999986 88888888877765 556666554 89999999998 79999999
Q ss_pred CCcEEEEEcCCC----------------------------------------------eEEEEEeccCCCCCcceEEEcC
Q 001178 609 DNQIKFWDMDNV----------------------------------------------NMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 609 dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
||.|++||+..+ +.+..+.. +...|++++|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s~ 316 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD--HNGEVWSVSWNL 316 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECT--TSSCEEEEEECS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec--ccccEEEEEEcC
Confidence 999999999865 34444443 444899999999
Q ss_pred CCCEEEEEECCCcEEEEecCCC
Q 001178 643 EGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++++|++++.||.|++|++.++
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTT
T ss_pred CCCEEEEecCCCcEEEEecCcC
Confidence 9999999999999999999876
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.5e-29 Score=283.40 Aligned_cols=257 Identities=14% Similarity=0.210 Sum_probs=210.9
Q ss_pred eeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 341 ACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 341 ~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
..++ +|.+.|++++|+|+|+ +||+|+.||.|+|||+..+.... ...+.+|...|.+++|+|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~-----------------~~~~~~h~~~v~~~~~~~ 65 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAH 65 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECC
T ss_pred cEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCccee-----------------eeEecCCCCcEEEEEeCC
Confidence 3344 4999999999999998 59999999999999997432211 114678999999999998
Q ss_pred C--CCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-CCC--ceeEE
Q 001178 420 D--GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSG--RKLFQ 492 (1131)
Q Consensus 420 d--g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~--~~~~~ 492 (1131)
+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. ++++++.|+.|++|| ..+ .....
T Consensus 66 ~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~ 142 (379)
T 3jrp_A 66 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII 142 (379)
T ss_dssp GGGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEE
T ss_pred CCCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEE
Confidence 7 99999999999999999998752 233467789999999999999 88 899999999999999 444 34456
Q ss_pred ecCCccCeEEEeecccC-----------CccEEEEEecCCeEEEEeCCCCcee----EEecCCCceEEEEEEccC---CC
Q 001178 493 FEGHEAPVYSVCPHQKE-----------NIHFIFSTAVDGKIKAWLYDNVGSR----VDYDAPGLWCTTMLYSAD---GS 554 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~---g~ 554 (1131)
+.+|...|.+++|++.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+ ++
T Consensus 143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 222 (379)
T 3jrp_A 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222 (379)
T ss_dssp EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC
Confidence 77899999999998742 5689999999999999999876533 466778889999999999 89
Q ss_pred EEEEEeecCCCCceEEEEeCCCCee--eEEEecc--cCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeE
Q 001178 555 RLFSCGTSKEGDSHLVEWNESEGAL--KRTYIGF--RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM 622 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1131)
+|++++. ++.|++||+.++.. ....... +...+.+++|+|++++|++++.||.|++|++.....
T Consensus 223 ~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 223 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp EEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred eEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 9999986 89999999988642 1122211 344799999999999999999999999999985443
No 106
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=7.6e-29 Score=278.35 Aligned_cols=250 Identities=11% Similarity=-0.019 Sum_probs=211.1
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
+..+|.+.|.+++|+|++++|++++.|+.|++||+.++........+.+|...|.+++|+|+++. +|++|+.|+.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEE
Confidence 35689999999999999999999999999999999987632233456689999999999999872 38899999999999
Q ss_pred eC-CCceeEEecC--CccCeEEEeecccCCccEEEEEecCCeEEEEeCCC---------CceeEEecCCCceEEEEEEcc
Q 001178 484 DL-SGRKLFQFEG--HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN---------VGSRVDYDAPGLWCTTMLYSA 551 (1131)
Q Consensus 484 d~-~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~s~ 551 (1131)
|. .......+.+ |...|.+++|++ +..+++++.|+.|++||+++ ......+. +...+.+++|+|
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 85 DLIGSPSFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred EeccCCceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 97 8888888999 999999999986 57999999999999999886 55444444 677899999999
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCC-Cee-eEEEecccCCceEEEEEeC-CCCEEEEEEcCCcEEEEEcCCC------eE
Q 001178 552 DGSRLFSCGTSKEGDSHLVEWNESE-GAL-KRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNV------NM 622 (1131)
Q Consensus 552 ~g~~l~~~~~~~~~~~~i~iwd~~~-~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~ 622 (1131)
++ +++++. ++.|++||+++ +.. .......+...+.+++|+| +++++++++.||.|++|++... +.
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 88 777765 88999999987 543 2333333455899999999 9999999999999999999887 66
Q ss_pred EEEEeccCC-------CCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 623 LTSTEAEGG-------LPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 623 ~~~~~~~~~-------~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
...+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 677766532 337999999999999999999999999998765
No 107
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-28 Score=280.56 Aligned_cols=253 Identities=19% Similarity=0.287 Sum_probs=215.5
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~ 481 (1131)
++.+|.+.|.+++|+|++++||+|+.||.|++||+..+. ......+.+|...|++++|+++ ++ +|++++.|+.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~ 82 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 82 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence 578999999999999999999999999999999998533 2334467899999999999987 77 899999999999
Q ss_pred EEe-CCCc--eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc--eeEEecCCCceEEEEEEcc-----
Q 001178 482 VWD-LSGR--KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG--SRVDYDAPGLWCTTMLYSA----- 551 (1131)
Q Consensus 482 iwd-~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~----- 551 (1131)
+|| .+++ .+..+.+|...|.+++|++..++.++++++.||.|++||++... ....+..+...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 999 6665 67788899999999999876446899999999999999998874 3446677888999999999
Q ss_pred --------CCCEEEEEeecCCCCceEEEEeCCCCe----eeEEEecccCCceEEEEEeCC---CCEEEEEEcCCcEEEEE
Q 001178 552 --------DGSRLFSCGTSKEGDSHLVEWNESEGA----LKRTYIGFRKKSAGVVQFDTT---RNRILAAGEDNQIKFWD 616 (1131)
Q Consensus 552 --------~g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iwd 616 (1131)
++.++++++. ++.|++||++++. ....+.+|.. .+.+++|+|+ +.+|++++.||.|++||
T Consensus 163 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp -------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 6999999986 8999999987764 4456666554 8999999999 89999999999999999
Q ss_pred cCCCe---EEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 617 MDNVN---MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 617 ~~~~~---~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+.++. .........+...|.+++|+|++++|++++.||.|++|++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 99864 3333333345558999999999999999999999999998754
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.8e-28 Score=283.29 Aligned_cols=233 Identities=20% Similarity=0.311 Sum_probs=206.4
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD- 484 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd- 484 (1131)
.+|...|.|++| |+++|++|+.||+|++||+.+++... .+.+|.+.|.+++| +++ ++++|+.||+|++||
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 367778998877 89999999999999999999887543 67899999999999 677 899999999999999
Q ss_pred CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee---EEecCCCceEEEEEEccCCCEEEEEee
Q 001178 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR---VDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
.+++.+..+.+|...|.+++|++ ..+++++.||.|++||+++.... ..+..|...|.++.+ +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 88999999999999999999852 58999999999999999887765 567788889999999 7889999986
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1131)
++.|++||+++++.+..+.+|.. .+.++.+ +++++++|+.||.|++||+.+++.+..+..+.. .|.+++|
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~- 344 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF- 344 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC-
T ss_pred ----CCeEEEEECCcCcEEEEEcCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe-
Confidence 89999999999999999998766 7888888 468999999999999999999999988876544 7899998
Q ss_pred CCCCEEEEEECCCcEEEEecCCC
Q 001178 642 KEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 642 p~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++.++++|+.||.|++||+.++
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHH
T ss_pred -cCCEEEEEeCCCcEEEEECCCC
Confidence 6889999999999999998544
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=4.5e-28 Score=275.12 Aligned_cols=295 Identities=15% Similarity=0.179 Sum_probs=233.9
Q ss_pred CCCceeEEecCCccCeEEEeecccC-CccEEEEEecCCeEEEEeCCC-Ccee-EEecCCCceEEEEEEccCCCEEEEEee
Q 001178 485 LSGRKLFQFEGHEAPVYSVCPHQKE-NIHFIFSTAVDGKIKAWLYDN-VGSR-VDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~dg~i~~wd~~~-~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
...+.+..+.+|.+.|.+++|++.. ++.+|++++.||.|++||+++ .... ..+..|...|.+++|+|++++|++++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 5566778889999999999997642 258999999999999999987 4443 567788999999999999999999986
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEE--eCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEE
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQF--DTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1131)
++.|++||+.+++.+.. ..| ...+.+++| ++++.+|++++.||.|++||+.+++.+..+..+. .+.++.
T Consensus 107 ----dg~v~iwd~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~ 177 (368)
T 3mmy_A 107 ----DKTAKMWDLSSNQAIQI-AQH-DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCYCAD 177 (368)
T ss_dssp ----TSEEEEEETTTTEEEEE-EEC-SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEEEEE
T ss_pred ----CCcEEEEEcCCCCceee-ccc-cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---CceEEE
Confidence 89999999999987764 344 448999999 8999999999999999999999999888887654 455555
Q ss_pred EcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcccccc
Q 001178 640 FNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719 (1131)
Q Consensus 640 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~ 719 (1131)
+. ...+++++.++.+.+|++..........
T Consensus 178 ~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~------------------------------------------------ 207 (368)
T 3mmy_A 178 VI--YPMAVVATAERGLIVYQLENQPSEFRRI------------------------------------------------ 207 (368)
T ss_dssp EE--TTEEEEEEGGGCEEEEECSSSCEEEEEC------------------------------------------------
T ss_pred ec--CCeeEEEeCCCcEEEEEeccccchhhhc------------------------------------------------
Confidence 55 4578889999999999986541100000
Q ss_pred CCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCC
Q 001178 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRT 799 (1131)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 799 (1131)
T Consensus 208 -------------------------------------------------------------------------------- 207 (368)
T 3mmy_A 208 -------------------------------------------------------------------------------- 207 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCE----EEEEe-CCeEEEEECCCc---eeEEEEe
Q 001178 800 EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY----VMSAG-GGKVSLFNMMNF---KVMTTFM 871 (1131)
Q Consensus 800 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~----la~~~-dg~i~vwd~~~~---~~~~~~~ 871 (1131)
...+...+.++++.++... +++++ +|.|++|++... ..+..+.
T Consensus 208 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 208 -----------------------------ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp -----------------------------CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred -----------------------------cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence 0001222233333333322 66666 788888888876 5566677
Q ss_pred CCCC------------CeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCC
Q 001178 872 SPPP------------ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA 939 (1131)
Q Consensus 872 ~~~~------------~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg 939 (1131)
.|.. .|.+++|+| ++++|++|+.||.|++||+.+++++..+.+|.++|++++|+|+|++|++++.|+
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 259 CHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp CSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred eeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 6665 799999999 899999999999999999999999999999999999999999999999999998
Q ss_pred cEEEEEcCC
Q 001178 940 QLIFWNTDT 948 (1131)
Q Consensus 940 ~v~lwd~~~ 948 (1131)
..+.|++-.
T Consensus 338 ~~~~~~~~~ 346 (368)
T 3mmy_A 338 WSKGHEFYN 346 (368)
T ss_dssp STTCGGGCC
T ss_pred ccccccccC
Confidence 666665544
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.2e-28 Score=281.01 Aligned_cols=299 Identities=10% Similarity=0.010 Sum_probs=232.0
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCc---ccccccceeeccccc----------------------------
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRE---RLVSKPFKIWDMSNC---------------------------- 396 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 396 (1131)
.++.+++|+|||+ +|+++ .++.|++||+.+|+ .+. .|.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAG-----KWSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEE-----EEECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeee-----ecCCccccccccccccchhhccccccccccccccc
Confidence 4789999999998 46655 47899999999998 332 2221100
Q ss_pred ------------ccceeceeccCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEec--CCCccceeeeeecCcCCeeEEE
Q 001178 397 ------------SMMLQAAIVKDSSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQ--GSNDLCQSLEIDAHVGGVNDLA 461 (1131)
Q Consensus 397 ------------~~~~~~~~~~~h~~~V~~~~~spdg~~l-as~~~d~~i~vwd~~--~~~~~~~~~~~~~h~~~V~~l~ 461 (1131)
..........+|.+.|.+++|+|+|++| |+|+.||.|++||+. +++.+... ....|...|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-EEEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-ecccCCCCceEEE
Confidence 0000111234677789999999999996 899999999999999 77655432 1236778999999
Q ss_pred EecCCCceEEEEEcCCCcEEEEe-CCCceeE----EecCCccCeEEEeeccc-CCccEEEEEecCCeEEEEeCCCCceeE
Q 001178 462 FSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF----QFEGHEAPVYSVCPHQK-ENIHFIFSTAVDGKIKAWLYDNVGSRV 535 (1131)
Q Consensus 462 ~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~~wd~~~~~~~~ 535 (1131)
|+|+++ +|++|+.|+.|++|+ .+++... .+.+|...|.+++|++. ..+.+|++++.|+.|++||++++....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 899999999999999 5555443 77889999999999875 226899999999999999999888776
Q ss_pred E-ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc------------------------CCc
Q 001178 536 D-YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR------------------------KKS 590 (1131)
Q Consensus 536 ~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------------------------~~~ 590 (1131)
. +..|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55788899999999 9999999986 8999999999999888886431 236
Q ss_pred eEEEEEeCCCCEEEEEE-cCCcEEEEEc--CCC---eEEEEEeccCCCCCcceEEEcCCCCEEEEEEC------CCcEEE
Q 001178 591 AGVVQFDTTRNRILAAG-EDNQIKFWDM--DNV---NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA------DQGIKI 658 (1131)
Q Consensus 591 v~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~------dg~i~i 658 (1131)
+..++|+|+++++++++ .|+.|++|++ ..+ +.+..+..+ ..+.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 88899999999999999 8999999999 555 666666655 37999999996533333332 455888
Q ss_pred EecCCC
Q 001178 659 LANADG 664 (1131)
Q Consensus 659 w~~~~~ 664 (1131)
|.+...
T Consensus 387 ~~~~~~ 392 (450)
T 2vdu_B 387 IEYNLN 392 (450)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 887543
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=2.5e-28 Score=280.56 Aligned_cols=246 Identities=15% Similarity=0.180 Sum_probs=205.8
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCeEEEEEecCCCc-cceeeeeecCcCCeeEEEEec-CCCceEEEEEcCCCcEEEEe-CC
Q 001178 411 SVSRVAWSPDGNFIG-VAFTKHLIHLYTYQGSND-LCQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDDKLIRVWD-LS 486 (1131)
Q Consensus 411 ~V~~~~~spdg~~la-s~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~V~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~ 486 (1131)
....++++|+...++ +++.||.|+||++..... ......+.+|.+.|++++|+| +++ +|++|+.|+.|+||| .+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccC
Confidence 445688999876544 578899999999965422 233345789999999999999 787 899999999999999 55
Q ss_pred C-------ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe--cCCCceEEEEEEccCCCEEE
Q 001178 487 G-------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--DAPGLWCTTMLYSADGSRLF 557 (1131)
Q Consensus 487 ~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~ 557 (1131)
+ +.+..+.+|...|.+++|++.. ..+|++++.||.|++||+++++....+ ..|...|.+++|+|++++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 5 5678899999999999997643 259999999999999999999888888 78889999999999999999
Q ss_pred EEeecCCCCceEEEEeCCCCeeeEEE-ecccCCceEEEEEeCCCCEEEEE---EcCCcEEEEEcCCCeE-EEEEeccCCC
Q 001178 558 SCGTSKEGDSHLVEWNESEGALKRTY-IGFRKKSAGVVQFDTTRNRILAA---GEDNQIKFWDMDNVNM-LTSTEAEGGL 632 (1131)
Q Consensus 558 ~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~ 632 (1131)
+++. ++.|++||+++++.+..+ ..|....+..+.|+|++.++++| +.|+.|++||+.+++. +..... .+.
T Consensus 193 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~ 267 (402)
T 2aq5_A 193 TSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTS 267 (402)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCC
T ss_pred EEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCC
Confidence 9986 899999999999999988 67666558899999999999998 7899999999998764 333322 233
Q ss_pred CCcceEEEcCCCCEEEEEE-CCCcEEEEecCCC
Q 001178 633 PSLPRLRFNKEGNLLVVTT-ADQGIKILANADG 664 (1131)
Q Consensus 633 ~~i~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~ 664 (1131)
..+.+++|+|+++++++++ .||.|++|++.++
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 4789999999999997554 7999999998766
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=9.4e-28 Score=269.71 Aligned_cols=277 Identities=14% Similarity=0.163 Sum_probs=213.1
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.|.+.|++++|||||+ +||+|+.+| ++|||+.+++.... .+...+..++++++++.+
T Consensus 17 ~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNYV 73 (355)
T ss_dssp --CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSEE
T ss_pred cCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEcCCCCEE
Confidence 4899999999999998 688888665 78999987765431 112247889999998887
Q ss_pred E-EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC-ceeEEecCCccCeE
Q 001178 425 G-VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-RKLFQFEGHEAPVY 501 (1131)
Q Consensus 425 a-s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~~~~~~h~~~v~ 501 (1131)
+ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++|| .++ +.+..+.. +..
T Consensus 74 ~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~ 141 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FGG 141 (355)
T ss_dssp EEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EEE
T ss_pred EEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CCc
Confidence 4 56778999999999987654 343 67799999999764 3333 378999999 555 56666554 333
Q ss_pred EEeecccCCccEEEE--EecCCeEEEEeCCCCc----------------eeEEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 502 SVCPHQKENIHFIFS--TAVDGKIKAWLYDNVG----------------SRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s--~s~dg~i~~wd~~~~~----------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
.+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|++++.
T Consensus 142 ~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-- 215 (355)
T 3vu4_A 142 VCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-- 215 (355)
T ss_dssp EEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred eEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--
Confidence 444443 34554 6899999999998765 15678889999999999999999999987
Q ss_pred CCCce-EEEEeCCCCeeeEEEe-cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEE--EE-------------
Q 001178 564 EGDSH-LVEWNESEGALKRTYI-GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLT--ST------------- 626 (1131)
Q Consensus 564 ~~~~~-i~iwd~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~------------- 626 (1131)
|++ |++||+++++.+..+. +.+...|.+++|+|++++|++++.|++|++||+..+.... .+
T Consensus 216 --d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
T 3vu4_A 216 --DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW 293 (355)
T ss_dssp --TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred --CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence 898 9999999999999998 5345589999999999999999999999999997653111 10
Q ss_pred -----ec-cCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 627 -----EA-EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 627 -----~~-~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.. .........++|+++++.+++++.||.+++|++..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 00 111123477999999999999999999999998665
No 113
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.4e-26 Score=243.08 Aligned_cols=299 Identities=12% Similarity=0.089 Sum_probs=201.8
Q ss_pred CEEEEEEcCCCC---EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCC
Q 001178 411 SVSRVAWSPDGN---FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG 487 (1131)
Q Consensus 411 ~V~~~~~spdg~---~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 487 (1131)
.+.++-|-.-|- .+++++. ..|++|+..++..-+..+++..|..+|..++|.||...++.++-+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------- 108 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGN----------- 108 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECS-----------
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeecc-----------
Confidence 466676755443 5666664 5899999999865567778999999999999999988744444332
Q ss_pred ceeEEecCCccCeEEEeecccC--CccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCC
Q 001178 488 RKLFQFEGHEAPVYSVCPHQKE--NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
-+...|.+++++|++ -++++++++.+ +.+|++ ++|+.+.+++. ..
T Consensus 109 -------~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l----------------------~~g~lv~ss~~--g~ 155 (356)
T 2w18_A 109 -------LEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL----------------------TKRRLVSSSGT--LS 155 (356)
T ss_dssp -------SSEEEEEEECC------CCEEEEEEEEE--EEEEEE----------------------TTTEEEEEESS--ST
T ss_pred -------ccccceEEEEECCCccccccEEEeCCCe--EEEEec----------------------CCCcEEEeccc--CC
Confidence 255678889886531 05788887744 667754 23444444321 12
Q ss_pred CceEEEEeC-CCCeeeEEEecccCCceEEEEEeC---CCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC-CCCCcceEEE
Q 001178 566 DSHLVEWNE-SEGALKRTYIGFRKKSAGVVQFDT---TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG-GLPSLPRLRF 640 (1131)
Q Consensus 566 ~~~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~i~~v~~ 640 (1131)
++.|++|++ .+|+.+..+.+|.. .+..++|++ ++..|++++.|++|+|||+.+++.+.++..+. +...+.+++|
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~-~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPP-EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCC-SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCcEEEEEECCCCceeeeeccCCC-ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 677888887 44777677666555 788889998 77999999999999999999999999887432 2334566677
Q ss_pred cCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccC
Q 001178 641 NKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNG 720 (1131)
Q Consensus 641 sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~ 720 (1131)
+|+|.++++++.+.. +|++
T Consensus 235 SpdG~~lvs~s~~~~--~w~l----------------------------------------------------------- 253 (356)
T 2w18_A 235 SEMGLLFIVLSHPCA--KESE----------------------------------------------------------- 253 (356)
T ss_dssp EETTEEEEEEC---------------------------------------------------------------------
T ss_pred CCCCCEEEEeccCCC--ccee-----------------------------------------------------------
Confidence 887777766554322 1221
Q ss_pred CCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCC
Q 001178 721 ADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTE 800 (1131)
Q Consensus 721 ~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~ 800 (1131)
++++.
T Consensus 254 --------------------------------------------------------------aSGs~------------- 258 (356)
T 2w18_A 254 --------------------------------------------------------------SLRSP------------- 258 (356)
T ss_dssp ------------------------------------------------------------------C-------------
T ss_pred --------------------------------------------------------------eccCC-------------
Confidence 12222
Q ss_pred CCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEE-----eCCCC
Q 001178 801 QNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTF-----MSPPP 875 (1131)
Q Consensus 801 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~-----~~~~~ 875 (1131)
|++|++||..+++++..+ .+|..
T Consensus 259 ----------------------------------------------------D~tIklWd~~tgk~l~v~~~~~p~Gh~~ 286 (356)
T 2w18_A 259 ----------------------------------------------------VFQLIVINPKTTLSVGVMLYCLPPGQAG 286 (356)
T ss_dssp ----------------------------------------------------CEEEEEEETTTTEEEEEEEECCCTTCCC
T ss_pred ----------------------------------------------------CcEEEEEECCCCEEEEEEEeeccCCCcc
Confidence 334444444444443332 13333
Q ss_pred CeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCee-EEEEccCCCEEEEEeCCCcEEEEEc
Q 001178 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT-GLAFSTNLNILVSSGSDAQLIFWNT 946 (1131)
Q Consensus 876 ~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~-~l~~s~dg~~l~s~~~Dg~v~lwd~ 946 (1131)
.+.+..+ ++.++|+|+.|++|+|||+.+++++.++.+|...+. +++|||||++|++|+.|++|+|||+
T Consensus 287 ~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 287 RFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 3333333 467899999999999999999999999999988765 6899999999999999999999986
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=9e-27 Score=270.95 Aligned_cols=304 Identities=10% Similarity=0.077 Sum_probs=242.9
Q ss_pred cccccCCC--cccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceec
Q 001178 328 QATWSLDD--LPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIV 405 (1131)
Q Consensus 328 ~~~~~~~~--~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1131)
..+|..+. ........+.....+.+++|+|++ .++++++.++.|++||+.+++...... ...+
T Consensus 101 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~ 165 (433)
T 3bws_A 101 EKLIALDKEGITHRFISRFKTGFQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKY 165 (433)
T ss_dssp TCEEECCBTTCSEEEEEEEECSSCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEECC--------------CHHH
T ss_pred eEEEEECCCCCcceEEEEEcCCCCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeecC--------------cccc
Confidence 34444444 233555666666778899999955 478888889999999999987664211 1135
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD- 484 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd- 484 (1131)
.+|...|.+++|+|+++++++++.|+.|++||+++++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDR 241 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEEC
Confidence 6899999999999999999999999999999999876543 56688999999999999984 446777899999999
Q ss_pred CCCceeEEecCCccCeEEEeecccCCccEEEEEe--------cCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEE
Q 001178 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA--------VDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 556 (1131)
.+++.+..+..+ ..+.+++|++ +++.+++++ .||.|++||+.+++..... .+...+.+++|+|+++.+
T Consensus 242 ~~~~~~~~~~~~-~~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 242 KTKLEIRKTDKI-GLPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp TTTEEEEECCCC-SEEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEE
T ss_pred CCCcEEEEecCC-CCceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEE
Confidence 777777777654 4588898865 557888887 4899999999887665544 334468899999999877
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEc---------------CCcEEEEEcCCCe
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGE---------------DNQIKFWDMDNVN 621 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~ 621 (1131)
++++. .++.|++||..+++.+..+.. ...+..++|+|+++++++++. ||.|++||+.+++
T Consensus 318 ~~~~~---~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 318 YVSDM---CCSKIEVYDLKEKKVQKSIPV--FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEET---TTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEec---CCCEEEEEECCCCcEEEEecC--CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 65532 388999999999998887763 347889999999999988876 5799999999999
Q ss_pred EEEEEeccCCCCCcceEEEcCCCCEEEEEEC-CCcEEEEecC
Q 001178 622 MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA-DQGIKILANA 662 (1131)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~-dg~i~iw~~~ 662 (1131)
.+..+..+. .+.+++|+|+|+++++++. |+.|++|++.
T Consensus 393 ~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 393 VKEFWEAGN---QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEECSS---SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEecCCC---CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 888887533 6899999999999998875 9999999975
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.3e-27 Score=276.87 Aligned_cols=265 Identities=15% Similarity=0.240 Sum_probs=212.8
Q ss_pred eeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 340 ~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
....+.|.+.|++++|+|++..+||+|+.||.|+|||+.+....... .........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------SGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------TCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------cccCCCcEEecCCCCCeEEEEeCC
Confidence 34566799999999999985458999999999999999763111000 000001124679999999999999
Q ss_pred CCC-EEEEEeCCCeEEEEEecCCCcc----ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC---cee
Q 001178 420 DGN-FIGVAFTKHLIHLYTYQGSNDL----CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG---RKL 490 (1131)
Q Consensus 420 dg~-~las~~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~---~~~ 490 (1131)
++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++|| .++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 9999999999999999874321 223456789999999999995444 899999999999999 444 567
Q ss_pred EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCC-CceeEEecCCCceEEEEEEccCCC-EEEEEeecCCCCce
Q 001178 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGS-RLFSCGTSKEGDSH 568 (1131)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~ 568 (1131)
..+..|...|.+++|++... .++++|+.||.|++||++. ......+..|...|.+++|+|+++ ++++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 78889999999999976432 4799999999999999998 455667888999999999999996 5777765 899
Q ss_pred EEEEeCCC--------------CeeeEEEecccCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCCC
Q 001178 569 LVEWNESE--------------GALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNV 620 (1131)
Q Consensus 569 i~iwd~~~--------------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1131)
|++||+.. .+.+..+.+|.. .+..++|+|+++ ++++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999976 255566666544 899999999998 8999999999999998753
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.9e-28 Score=302.30 Aligned_cols=251 Identities=14% Similarity=0.200 Sum_probs=209.7
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC--CC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD--GN 422 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd--g~ 422 (1131)
+|.+.|++++|+|+|++ |++|+.||.|+|||+.++.... ...+.+|.+.|.+++|+|+ ++
T Consensus 7 gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~-----------------~~~l~~h~~~V~~l~~s~~~~~~ 68 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFGT 68 (753)
T ss_dssp -CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECCTTSCS
T ss_pred cCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCcc-----------------ceeccCCcCceEEEEecCCCCCC
Confidence 49999999999999984 8999999999999997433211 1147799999999999998 99
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-CCC--ceeEEecCCc
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSG--RKLFQFEGHE 497 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~--~~~~~~~~h~ 497 (1131)
+|++|+.||+|++||+.+++. .....+.+|...|++++|+|+ ++ .+++|+.|+.|++|| ..+ .....+.+|.
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~ 145 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (753)
T ss_dssp EEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred EEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence 999999999999999998752 233467889999999999999 88 899999999999999 444 3455677899
Q ss_pred cCeEEEeecccC-----------CccEEEEEecCCeEEEEeCCCCc----eeEEecCCCceEEEEEEccC---CCEEEEE
Q 001178 498 APVYSVCPHQKE-----------NIHFIFSTAVDGKIKAWLYDNVG----SRVDYDAPGLWCTTMLYSAD---GSRLFSC 559 (1131)
Q Consensus 498 ~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~---g~~l~~~ 559 (1131)
..|.+++|++.. ++..+++|+.||.|++||+++.. ....+..|...|.+++|+|+ +++++++
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 999999998742 56899999999999999998763 34466788899999999999 8999999
Q ss_pred eecCCCCceEEEEeCCCCe-----eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 560 GTSKEGDSHLVEWNESEGA-----LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
+. ++.|++||+.++. ....... +...+.+++|+|+++++++++.||.|++|++..+.
T Consensus 226 s~----Dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 226 SQ----DRTCIIWTQDNEQGPWKKTLLKEEK-FPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ES----SSCEEEEEESSSSSCCBCCBSSSSC-CSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ec----CCEEEEecCCCCCCcceeEEeccCC-CCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 86 8999999998864 2222222 34478899999999999999999999999998643
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=5.5e-27 Score=263.46 Aligned_cols=239 Identities=10% Similarity=0.179 Sum_probs=186.1
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
..+|...|.+++|+|||++||+|+.++ +++||+.+++... ..+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-----SQEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-----EEECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-----eeecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 468999999999999999999998775 7899998765332 122235888999998884 446788899999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC-ceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.+++.+..+. |...|.++++++ + .++++ .|+.|++||+.+. +....+.. ....+++++ .++++++.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg- 155 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE- 155 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence 8888888886 677999999854 2 34443 4889999999887 44443333 445566777 67776511
Q ss_pred CCCCceEEEEeCCCCe----------------eeEEEecccCCceEEEEEeCCCCEEEEEEcCCc-EEEEEcCCCeEEEE
Q 001178 563 KEGDSHLVEWNESEGA----------------LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ-IKFWDMDNVNMLTS 625 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~----------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~ 625 (1131)
..++.|++||+.++. .+..+.+|.. .|.+++|+|++.+|++++.|++ |++||+.+++.+..
T Consensus 156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~ 233 (355)
T 3vu4_A 156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233 (355)
T ss_dssp -SCTTCEEEEECCC------------------CCEEECCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 238899999999865 2677887765 8999999999999999999998 99999999999988
Q ss_pred EeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 626 TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 626 ~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+....+...|.+++|+|++++|++++.|+.|++||+..+
T Consensus 234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 873223448999999999999999999999999999765
No 118
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.8e-26 Score=243.94 Aligned_cols=219 Identities=17% Similarity=0.135 Sum_probs=166.1
Q ss_pred CccceEEEEeecC----CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEe
Q 001178 766 SASKVARLLYTNS----GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVAL 841 (1131)
Q Consensus 766 ~~~~i~~l~~s~~----g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~ 841 (1131)
+...|..++++|+ +..++.++.+ +++|++
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l--------------------------------------------- 142 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL--------------------------------------------- 142 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEE---------------------------------------------
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEec---------------------------------------------
Confidence 4466788999999 8888887754 444531
Q ss_pred cCCCCEEEEEe---CCeEEEEEC-CCceeEEEEeCCCCCeeEEEEeC--CCCcEEEEEeCCCcEEEEEeecceeEEeecc
Q 001178 842 SKNDSYVMSAG---GGKVSLFNM-MNFKVMTTFMSPPPASTFLAFHP--QDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG 915 (1131)
Q Consensus 842 s~dg~~la~~~---dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~--~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~ 915 (1131)
++|+.+.++. |+.|++|++ .+++.+..+..|...++.++|++ +++.+||+|+.|++|+|||+.+++++.++.+
T Consensus 143 -~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g 221 (356)
T 2w18_A 143 -TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI 221 (356)
T ss_dssp -TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred -CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC
Confidence 4566666654 788999998 55888888888888888888887 4679999999999999999999999999987
Q ss_pred ccc---CeeEEEEccCCCEE------------EEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEE
Q 001178 916 HQK---HITGLAFSTNLNIL------------VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1131)
Q Consensus 916 h~~---~V~~l~~s~dg~~l------------~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 980 (1131)
|.. .+.+++|+|||.++ ++|+.|++|++||..+++.........+.++. ..+. ..+.++.++
T Consensus 222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~-~~~l--sg~~sg~~l 298 (356)
T 2w18_A 222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA-GRFL--EGDVKDHCA 298 (356)
T ss_dssp CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC-CCEE--EEEEETTEE
T ss_pred CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc-ceeE--ccccCCCEE
Confidence 543 67788999999876 56888999999999998766544433344433 2233 333347778
Q ss_pred EEEe-CCeEEEEeCCCcccceeeecCCCCCCC-eEEEEEccCCCEEEEEecCCcEEEEEC
Q 001178 981 LVNH-ETQLAIYDGSKMECIRQWVPQDVLSSP-ISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 981 ~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~-v~~i~~s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
++++ |+.|+|||+.+++++..+.+| ... +.+++|||||++|++|+.|++|+|||+
T Consensus 299 ASgS~DgTIkIWDl~tGk~l~tL~gH---~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 299 AAILTSGTIAIWDLLLGQCTALLPPV---SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCC-----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEecCC---CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 8865 999999999999999998876 444 446899999999999999999999995
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4e-27 Score=263.87 Aligned_cols=279 Identities=10% Similarity=0.070 Sum_probs=217.1
Q ss_pred EEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC
Q 001178 461 AFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539 (1131)
Q Consensus 461 ~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 539 (1131)
.+.+++. ++++|+.|++|++|| .+++.+..+. ...|.++.+++. +++++.|++|++|+.+.
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 4445676 899999999999999 8888887776 567777877654 99999999999998642
Q ss_pred CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC--CCCEEEEEEcCCcEEEEEc
Q 001178 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT--TRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 540 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~ 617 (1131)
.+.+|+..+++.+..+...+...+.+++|+| +++++++++.||.|++||+
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence 4677888888877777644455899999999 9999999999999999999
Q ss_pred CCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccc
Q 001178 618 DNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTIT 697 (1131)
Q Consensus 618 ~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 697 (1131)
.+++.+.....+. ...+.+++|+|++.++++|+.||.|++||+.++......
T Consensus 157 ~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~--------------------------- 208 (343)
T 3lrv_A 157 EDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR--------------------------- 208 (343)
T ss_dssp SSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEE---------------------------
T ss_pred CCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccE---------------------------
Confidence 9998866654332 236999999999999999999999999998765100000
Q ss_pred ccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeec
Q 001178 698 PVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTN 777 (1131)
Q Consensus 698 p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 777 (1131)
T Consensus 209 -------------------------------------------------------------------------------- 208 (343)
T 3lrv_A 209 -------------------------------------------------------------------------------- 208 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEE
Q 001178 778 SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVS 857 (1131)
Q Consensus 778 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~ 857 (1131)
+...|...|.+++|+|+|.+|+++++++|+
T Consensus 209 --------------------------------------------------~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~ 238 (343)
T 3lrv_A 209 --------------------------------------------------FPVDEEAKIKEVKFADNGYWMVVECDQTVV 238 (343)
T ss_dssp --------------------------------------------------CCCCTTSCEEEEEECTTSSEEEEEESSBEE
T ss_pred --------------------------------------------------EeccCCCCEEEEEEeCCCCEEEEEeCCeEE
Confidence 001267888999999999999999977999
Q ss_pred EEECCCceeEEEEeC---CCCCe--eEEEEeCCCCcEEEEEeC-CCcEEEEEeecceeEEeecccccCeeEEEEcc---C
Q 001178 858 LFNMMNFKVMTTFMS---PPPAS--TFLAFHPQDNNIIAIGME-DSTIQIYNVRVDEVKTKLKGHQKHITGLAFST---N 928 (1131)
Q Consensus 858 vwd~~~~~~~~~~~~---~~~~i--~~l~~s~~~~~~la~g~~-dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~---d 928 (1131)
+||+.+++.+..+.. |...+ .+++|+| ++++|++++. |+.|++|++.+....... .++..++|++ +
T Consensus 239 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~ 313 (343)
T 3lrv_A 239 CFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTAD 313 (343)
T ss_dssp EEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CC
T ss_pred EEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccc
Confidence 999988876655443 33334 3699999 8999999998 999999999765433222 5688899998 8
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 001178 929 LNILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 929 g~~l~s~~~Dg~v~lwd~~~ 948 (1131)
...+++++.|+.+.++-...
T Consensus 314 ~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 314 FTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp CCEEEEEEETTEEEEEEECS
T ss_pred cceeEEEecCCceEEEEecC
Confidence 89999999999999886544
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=5.1e-26 Score=260.56 Aligned_cols=274 Identities=10% Similarity=0.074 Sum_probs=220.2
Q ss_pred cEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEec
Q 001178 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQ 439 (1131)
Q Consensus 361 ~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l-as~~~d~~i~vwd~~ 439 (1131)
+++++++.|+.|++||+.+++.+. .+.+|. .+.+++|+|+|++| ++++.|++|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~-------------------~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA-------------------TIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE-------------------EEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE-------------------EeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 578999999999999999987664 234454 58999999999987 667789999999999
Q ss_pred CCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEE-EEE
Q 001178 440 GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFI-FST 517 (1131)
Q Consensus 440 ~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~ 517 (1131)
+++.+. .+..|. .+.+++|+|+++. ++++++.|+.|++|| .+++.+..+..+ ..+.+++|++ +++.+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEEe
Confidence 887543 344444 8999999999994 446777889999999 677777776644 5688999865 44655 788
Q ss_pred ecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEe
Q 001178 518 AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFD 597 (1131)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s 597 (1131)
+.|+.|++||+.+++....+..+ ..+..++|+|+++++++++. .++.|++||+.+++.+..+.. ...+.+++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKV--EAAPSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEEC--SSEEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEec--CCCccceEEC
Confidence 88999999999988877776655 45699999999998865432 278999999999988877764 2368889999
Q ss_pred CCCCEEEEEE---cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEE-EEEECCCcEEEEecCCCchhhhhhh
Q 001178 598 TTRNRILAAG---EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL-VVTTADQGIKILANADGLRALRAIE 672 (1131)
Q Consensus 598 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1131)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.++ +....+.
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~ 283 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMA 283 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEE
Confidence 9999999888 68999999999999888887654 47899999999987 56678999999999887 3443333
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=1.7e-26 Score=267.38 Aligned_cols=252 Identities=17% Similarity=0.258 Sum_probs=210.3
Q ss_pred eccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecCC-------CccceeeeeecCcCCeeEEEEecCCCceEEEEEc
Q 001178 404 IVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGS-------NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG 475 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~-------~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s 475 (1131)
...+|.+.|++++|+|+ +.+||+++.||.|++||+.+. ........+.+|...|.+++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 45689999999999997 789999999999999999862 112344568899999999999999886 699999
Q ss_pred CCCcEEEEe-CCCce-------eEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC---ceeEEecCCCceE
Q 001178 476 DDKLIRVWD-LSGRK-------LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV---GSRVDYDAPGLWC 544 (1131)
Q Consensus 476 ~d~~i~iwd-~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v 544 (1131)
.||.|++|| ..+.. ...+.+|...|.+++|++. ++.++++++.||.|++||+++. .....+..|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999 44221 4567789999999999873 3479999999999999999987 4566777888999
Q ss_pred EEEEEccCCC-EEEEEeecCCCCceEEEEeCCC-CeeeEEEecccCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCC--
Q 001178 545 TTMLYSADGS-RLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDN-- 619 (1131)
Q Consensus 545 ~~~~~s~~g~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~-- 619 (1131)
++++|+|++. .+++++. ++.|++||+++ +..+..+..|.. .+.+++|+|+++ +|++++.||.|++||+..
T Consensus 281 ~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp EEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred EEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 9999999998 5777775 89999999998 567788887655 899999999985 689999999999999987
Q ss_pred ------------CeEEEEEeccCCCCCcceEEEcCCCC-EEEEEECCCcEEEEecCCC
Q 001178 620 ------------VNMLTSTEAEGGLPSLPRLRFNKEGN-LLVVTTADQGIKILANADG 664 (1131)
Q Consensus 620 ------------~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~~~~~dg~i~iw~~~~~ 664 (1131)
.+.+..... +...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECCC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccCccccccCCcceEEEcCC--CCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 244444443 344799999999999 9999999999999998654
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=2.1e-25 Score=259.32 Aligned_cols=354 Identities=13% Similarity=0.101 Sum_probs=259.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCC-CeEEEEEecCCCccceeeeeecCcCCeeEEE---EecCCCceEEE-----------
Q 001178 408 SSISVSRVAWSPDGNFIGVAFTK-HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLA---FSYPNKQLCIV----------- 472 (1131)
Q Consensus 408 h~~~V~~~~~spdg~~las~~~d-~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~---~s~d~~~~~l~----------- 472 (1131)
....|..+.++|....++..... ...+++.. .....+..++ |+|++..++++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM-------------DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYR 92 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEE-------------ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEE
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeec-------------ccCCccEEEEEeeccCCCcEEEEEEccccCcceee
Confidence 34567778888865444433211 11222221 1223455666 66666532222
Q ss_pred -EEcCCC--cEEEEeC-CC--ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE-----EecCCC
Q 001178 473 -TCGDDK--LIRVWDL-SG--RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-----DYDAPG 541 (1131)
Q Consensus 473 -s~s~d~--~i~iwd~-~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-----~~~~~~ 541 (1131)
+++.++ .|..||. ++ +.+..+..+ ..+.+++|++ ++.++++++.|+.|++||+.+++... .+..|.
T Consensus 93 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 93 IRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp ESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred ecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence 233344 4455553 33 445555544 4456888876 56788888899999999999887765 334677
Q ss_pred ceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCC
Q 001178 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNV 620 (1131)
Q Consensus 542 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 620 (1131)
..+.+++|+++++++++++. ++.|++||..+++.+..+..+.. .+.+++|+|+++++++++ .|+.|++||+.++
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~----d~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQ----ANAVHVFDLKTLAYKATVDLTGK-WSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGG----GTEEEEEETTTCCEEEEEECSSS-SEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred CceeEEEEcCCCEEEEEECC----CCEEEEEECCCceEEEEEcCCCC-CeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence 78999999999999999876 89999999999999888886544 799999999999886555 7999999999999
Q ss_pred eEEEEEeccCCCCCcceEEEcCCCCEEEEEE--------CCCcEEEEecCCCchhhhhhhccccccccccccccccCccc
Q 001178 621 NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT--------ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAV 692 (1131)
Q Consensus 621 ~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~--------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1131)
+.+..+..+. .+.+++|+|+++.+++++ .|+.|++||+.++.. .
T Consensus 245 ~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~-~------------------------ 296 (433)
T 3bws_A 245 LEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL-I------------------------ 296 (433)
T ss_dssp EEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE-E------------------------
T ss_pred cEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE-E------------------------
Confidence 8887776543 589999999999999887 477788887654300 0
Q ss_pred eecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEE
Q 001178 693 VTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772 (1131)
Q Consensus 693 ~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 772 (1131)
T Consensus 297 -------------------------------------------------------------------------------- 296 (433)
T 3bws_A 297 -------------------------------------------------------------------------------- 296 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEE-
Q 001178 773 LLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA- 851 (1131)
Q Consensus 773 l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~- 851 (1131)
... .+...+.+++|+|+++.++++
T Consensus 297 ----------~~~---------------------------------------------~~~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 297 ----------DTI---------------------------------------------GPPGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp ----------EEE---------------------------------------------EEEECEEEEEECSSTTEEEEEE
T ss_pred ----------eec---------------------------------------------cCCCCcceEEECCCCCEEEEEe
Confidence 000 012245678899999866544
Q ss_pred e-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeC---------------CCcEEEEEeecceeEEeecc
Q 001178 852 G-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME---------------DSTIQIYNVRVDEVKTKLKG 915 (1131)
Q Consensus 852 ~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~---------------dg~I~iwd~~~~~~~~~~~~ 915 (1131)
+ ++.|++||+.+++.+..+. +...+.+++|+| ++++|++++. ||.|++||+.+++.+..+..
T Consensus 322 ~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 322 MCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred cCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC
Confidence 4 7999999999999888876 567799999999 8888887776 57999999999998888876
Q ss_pred cccCeeEEEEccCCCEEEEEeC-CCcEEEEEcCC
Q 001178 916 HQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDT 948 (1131)
Q Consensus 916 h~~~V~~l~~s~dg~~l~s~~~-Dg~v~lwd~~~ 948 (1131)
+ ..+.+++|+|||++|++++. |+.|++|+++.
T Consensus 400 ~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 400 G-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp S-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred C-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 4 57999999999999988875 99999999874
No 123
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.4e-27 Score=292.70 Aligned_cols=253 Identities=19% Similarity=0.281 Sum_probs=212.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~ 481 (1131)
++.+|.+.|++++|+|+|++|++|+.||+|+|||+.++. ......+.+|.++|++++|+++ ++ +|++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 578999999999999999999999999999999998543 2334468899999999999998 77 899999999999
Q ss_pred EEe-CCCc--eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc--eeEEecCCCceEEEEEEcc-----
Q 001178 482 VWD-LSGR--KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG--SRVDYDAPGLWCTTMLYSA----- 551 (1131)
Q Consensus 482 iwd-~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~----- 551 (1131)
+|| .+++ .+..+.+|...|.+++|++..++..+++++.||.|++||++... ....+..+...|.++.|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 999 6665 67788899999999999876446899999999999999998773 3446677888999999999
Q ss_pred --------CCCEEEEEeecCCCCceEEEEeCCCC----eeeEEEecccCCceEEEEEeCC---CCEEEEEEcCCcEEEEE
Q 001178 552 --------DGSRLFSCGTSKEGDSHLVEWNESEG----ALKRTYIGFRKKSAGVVQFDTT---RNRILAAGEDNQIKFWD 616 (1131)
Q Consensus 552 --------~g~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iwd 616 (1131)
++.++++++. ++.|++||++++ .....+.+|.. .|.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999986 899999999876 55566777655 8999999999 89999999999999999
Q ss_pred cCCCeEE---EEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 617 MDNVNML---TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 617 ~~~~~~~---~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+.++... .......+...|.+++|+|+++++++++.||.|++|++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 11222334557999999999999999999999999998754
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=3.3e-25 Score=253.82 Aligned_cols=327 Identities=10% Similarity=0.106 Sum_probs=253.3
Q ss_pred EEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEE-EEEecCCeEEEEeCCCCceeEEecCCCceEEEE
Q 001178 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFI-FSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTM 547 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1131)
++++++.|+.|++|| .+++.+..+..|. .+.+++|++ ++..+ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 789999999999999 7788888887765 488999865 45655 677799999999999888877776555 79999
Q ss_pred EEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEE-EEEEcCCcEEEEEcCCCeEEEEE
Q 001178 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI-LAAGEDNQIKFWDMDNVNMLTST 626 (1131)
Q Consensus 548 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 626 (1131)
+|+|+++++++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999999877653 26899999999999988887543 67899999999977 67778999999999999988887
Q ss_pred eccCCCCCcceEEEcCCCCEE-EEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccccccc
Q 001178 627 EAEGGLPSLPRLRFNKEGNLL-VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAER 705 (1131)
Q Consensus 627 ~~~~~~~~i~~v~~sp~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 705 (1131)
..+. .+..++|+|+++.+ ++++.++.|++||+.++.. ..
T Consensus 155 ~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~------------------------------------ 194 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-ID------------------------------------ 194 (391)
T ss_dssp ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EE------------------------------------
T ss_pred ecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-EE------------------------------------
Confidence 7643 46899999999887 5667789999999765410 00
Q ss_pred ccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEe
Q 001178 706 VDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILAL 785 (1131)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 785 (1131)
T Consensus 195 -------------------------------------------------------------------------------- 194 (391)
T 1l0q_A 195 -------------------------------------------------------------------------------- 194 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe----CCeEEEEEC
Q 001178 786 WSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG----GGKVSLFNM 861 (1131)
Q Consensus 786 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~----dg~i~vwd~ 861 (1131)
.. .+...+.+++|+|+|+++++++ ++.|++||+
T Consensus 195 -------~~------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 195 -------TV------------------------------------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp -------EE------------------------------------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred -------EE------------------------------------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 00 0223456788899998888775 588999999
Q ss_pred CCceeEEEEeCCCCCeeEEEEeCCCCcEE-EEEeCCCcEEEEEeecceeEEeecccccCee---EEE------------E
Q 001178 862 MNFKVMTTFMSPPPASTFLAFHPQDNNII-AIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT---GLA------------F 925 (1131)
Q Consensus 862 ~~~~~~~~~~~~~~~i~~l~~s~~~~~~l-a~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~---~l~------------~ 925 (1131)
.+++.+..+..+. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+. |
T Consensus 232 ~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f 309 (391)
T 1l0q_A 232 GTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADF 309 (391)
T ss_dssp TTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCE
T ss_pred CCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccc
Confidence 9999988888754 588999999 66655 7778999999999999999888877765432 122 2
Q ss_pred ccCC----------CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 926 STNL----------NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 926 s~dg----------~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
+.+. ..+...+.|..+++|++..+.... .......|+++|.+.+.
T Consensus 310 s~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~------------~~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 310 KSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK------------KQNPTHTYSETGIYTVR 364 (391)
T ss_dssp EESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC------------SSSCEECCSSCEEEEEE
T ss_pred ccccccccccccceEEEEeCCCCceEEEEECCCCcccC------------cCCCeEEeCCCceEEEE
Confidence 2221 246666778899999998765311 11234679999988774
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=7.6e-27 Score=266.35 Aligned_cols=303 Identities=12% Similarity=0.093 Sum_probs=199.8
Q ss_pred CCcEEEEEE---ecCCCcEEEEEcCCCeEEEEECCCCccccc-----ccceeeccccccc-----ceeceeccCCCCCEE
Q 001178 347 GSSVVSMDF---HPFHHTLLVVGCGDGEITLWDVGLRERLVS-----KPFKIWDMSNCSM-----MLQAAIVKDSSISVS 413 (1131)
Q Consensus 347 ~~~V~~~~f---spdg~~llasg~~dg~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~ 413 (1131)
.....+++| +|++..++++| .++.|.+|+......... .....|....... .........|...+.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 345566666 46666666666 478899998643322111 0111111111000 001112334555666
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCCccc--eeeeeecCcCCeeEEEEec--------CCCceEEEEEcCCCcEEEE
Q 001178 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLC--QSLEIDAHVGGVNDLAFSY--------PNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 414 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~--~~~~~~~h~~~V~~l~~s~--------d~~~~~l~s~s~d~~i~iw 483 (1131)
...+++++.+||+|+.|++|++||+++++... ....+.+|.+.|++++|+| |++ +|+|||.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEE
Confidence 66777788899999999999999999876532 2234789999999999998 777 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe-------------------------
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY------------------------- 537 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~------------------------- 537 (1131)
| .++.++..+.+|..+|.+++|+|.. ..+|++++.||+|++||+++.......
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 9 7788888888999999999998743 358999999999999999876543321
Q ss_pred cCCCceEEEEEEc-cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEE------------------EEEeC
Q 001178 538 DAPGLWCTTMLYS-ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGV------------------VQFDT 598 (1131)
Q Consensus 538 ~~~~~~v~~~~~s-~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~------------------~~~s~ 598 (1131)
..+...+.++.|+ ++++.+++++. ++.+++||+..++....+..+.. .+.. ..++|
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred ccccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEcc
Confidence 2345567788886 79999999986 89999999988776655544322 1211 22333
Q ss_pred -CCC-EEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 599 -TRN-RILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 599 -~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
.+. ++++|+.||.|++||+.+++.......+.. .|.+++|+|||++||+++.+| +.+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 233 566788899999999999988777665544 799999999999999998776 555554
No 126
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-25 Score=261.15 Aligned_cols=243 Identities=14% Similarity=0.097 Sum_probs=201.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeee--------------------------------------
Q 001178 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEID-------------------------------------- 451 (1131)
Q Consensus 410 ~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~-------------------------------------- 451 (1131)
.++.+++|+|||++|+++ .++.|++||+.+|+.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478899999999977665 57899999999987211111222
Q ss_pred ----------------cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-C--CCceeEEec--CCccCeEEEeecccCC
Q 001178 452 ----------------AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L--SGRKLFQFE--GHEAPVYSVCPHQKEN 510 (1131)
Q Consensus 452 ----------------~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~--~~~~~~~~~--~h~~~v~~~~~~~~~~ 510 (1131)
+|.+.|++++|+|+++. ++++++.|+.|+||| . +++.+..+. .|...|.+++|++ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~ 160 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESR-LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--D 160 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSE-EEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--T
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCE-EEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--C
Confidence 35557999999999993 248999999999999 6 688888876 5678999999965 5
Q ss_pred ccEEEEEecCCeEEEEeCCCCceeE----EecCCCceEEEEEEccC---CCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 511 IHFIFSTAVDGKIKAWLYDNVGSRV----DYDAPGLWCTTMLYSAD---GSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 511 ~~~l~s~s~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~---g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
+.+|++++.||.|++|++.+..... .+..|...|.+++|+|+ +++|++++. ++.|++||+.+++.+..+
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEEE
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeeee
Confidence 6899999999999999998766543 56678889999999999 999999986 899999999999988875
Q ss_pred ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc-----------------------CCCCCcceEEE
Q 001178 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-----------------------GGLPSLPRLRF 640 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~i~~v~~ 640 (1131)
...+...+.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....|..++|
T Consensus 237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 53344589999999 9999999999999999999999988887632 12236889999
Q ss_pred cCCCCEEEEEE-CCCcEEEEec
Q 001178 641 NKEGNLLVVTT-ADQGIKILAN 661 (1131)
Q Consensus 641 sp~~~~l~~~~-~dg~i~iw~~ 661 (1131)
+|+++++++++ .++.|++|++
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEEe
Confidence 99999999999 8999999998
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.5e-27 Score=261.20 Aligned_cols=267 Identities=9% Similarity=0.073 Sum_probs=208.6
Q ss_pred EEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 001178 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433 (1131)
Q Consensus 354 ~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i 433 (1131)
.+.+++. ++++|+.||+|++||+.+++.+.. +. ...|.+++|+|+ +++++.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 3445665 699999999999999999887642 11 346778888888 9999999999
Q ss_pred EEEEec---------CCCccceeeeeecCcCCeeEEEEec--CCCceEEEEEcCCCcEEEEe-CCCceeEEec-CCccCe
Q 001178 434 HLYTYQ---------GSNDLCQSLEIDAHVGGVNDLAFSY--PNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE-GHEAPV 500 (1131)
Q Consensus 434 ~vwd~~---------~~~~~~~~~~~~~h~~~V~~l~~s~--d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~-~h~~~v 500 (1131)
++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++++.|++|++|| .+++.+.... .|...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999765 3322221 1236778999999999 998 899999999999999 7777766654 455689
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCcee-EEecC-CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
.+++|+| ++.+|++|+.||.|++||++++... ..+.. |...|.+++|+|+|.+|++++ ++.|++||+++++
T Consensus 174 ~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSST
T ss_pred EEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCCC
Confidence 9999965 5689999999999999999998877 67777 889999999999999999998 3499999999887
Q ss_pred eeEEEeccc--CCce--EEEEEeCCCCEEEEEEc-CCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC---CCCEEEEE
Q 001178 579 LKRTYIGFR--KKSA--GVVQFDTTRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK---EGNLLVVT 650 (1131)
Q Consensus 579 ~~~~~~~~~--~~~v--~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp---~~~~l~~~ 650 (1131)
.+..+..+. ...+ .+++|+|++++|++++. |+.|++|++......... .++..++|++ +...++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEE
T ss_pred cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEE
Confidence 665444311 1122 36999999999999998 999999999765433222 1467778888 88899999
Q ss_pred ECCCcEEEEecC
Q 001178 651 TADQGIKILANA 662 (1131)
Q Consensus 651 ~~dg~i~iw~~~ 662 (1131)
+.||.+.++-..
T Consensus 321 ~~d~~~~~~~~~ 332 (343)
T 3lrv_A 321 CGDGGIAAILKT 332 (343)
T ss_dssp EETTEEEEEEEC
T ss_pred ecCCceEEEEec
Confidence 999999988643
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.2e-24 Score=256.80 Aligned_cols=336 Identities=13% Similarity=0.117 Sum_probs=256.3
Q ss_pred cCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC--CCCeeeEEEec
Q 001178 508 KENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE--SEGALKRTYIG 585 (1131)
Q Consensus 508 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~ 585 (1131)
++++.++++++.|++|.+||..+++....+..... +..++|+|||++|++++. ++.|.+||+ .+++.+..+..
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~----d~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGR----DARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEET----TSEEEEEETTSSSCEEEEEEEC
T ss_pred CCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECC----CCeEEEEECcCCCCcEEEEEec
Confidence 34567889999999999999999888877764333 889999999999999986 689999999 88988888874
Q ss_pred ccCCceEEEEEeC----CCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccC---------CCCCcceEEEcCCCCEE-EEE
Q 001178 586 FRKKSAGVVQFDT----TRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEG---------GLPSLPRLRFNKEGNLL-VVT 650 (1131)
Q Consensus 586 ~~~~~v~~~~~s~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---------~~~~i~~v~~sp~~~~l-~~~ 650 (1131)
......++|+| +++++++++ .+++|.+||..+++++..+...+ ....+..+.++|++..+ ++.
T Consensus 221 --g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 221 --GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp --CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred --CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 33578899999 999999987 48999999999999998887532 12257788999976654 455
Q ss_pred ECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCC
Q 001178 651 TADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEK 730 (1131)
Q Consensus 651 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 730 (1131)
..++.|.+||..+... .
T Consensus 299 ~~~g~i~vvd~~~~~~-l-------------------------------------------------------------- 315 (543)
T 1nir_A 299 KETGKVLLVNYKDIDN-L-------------------------------------------------------------- 315 (543)
T ss_dssp TTTTEEEEEECTTSSS-C--------------------------------------------------------------
T ss_pred CCCCeEEEEEecCCCc-c--------------------------------------------------------------
Confidence 5678898888754410 0
Q ss_pred ceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCcccee
Q 001178 731 PRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAA 810 (1131)
Q Consensus 731 ~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 810 (1131)
. +..
T Consensus 316 -----------~--------------------------------------------------~~~--------------- 319 (543)
T 1nir_A 316 -----------T--------------------------------------------------VTS--------------- 319 (543)
T ss_dssp -----------E--------------------------------------------------EEE---------------
T ss_pred -----------e--------------------------------------------------eEE---------------
Confidence 0 000
Q ss_pred eeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeC----CCCCeeEEEEeC
Q 001178 811 VAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS----PPPASTFLAFHP 884 (1131)
Q Consensus 811 ~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~ 884 (1131)
+ .+...+..++|+|||+++++++ +++|.+||+.+++++..+.. |.+....+ ++|
T Consensus 320 -----------------i--~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p 379 (543)
T 1nir_A 320 -----------------I--GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP 379 (543)
T ss_dssp -----------------E--ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred -----------------e--ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence 0 0123355789999999877665 68999999999999988874 44433333 577
Q ss_pred CCCcEEEEEe-CCCcEEEEEeec-------ceeEEeecccccCeeEEEEccCCCEEEEEe-------CCCcEEEEEcCCC
Q 001178 885 QDNNIIAIGM-EDSTIQIYNVRV-------DEVKTKLKGHQKHITGLAFSTNLNILVSSG-------SDAQLIFWNTDTW 949 (1131)
Q Consensus 885 ~~~~~la~g~-~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~-------~Dg~v~lwd~~~~ 949 (1131)
+++.+++++. .|++|.+||+.+ ++++.++.+|.+.+..++|+|||++|++++ .+++|.+||+.++
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 4578888876 689999999998 899999999999999999999999999987 2678999999886
Q ss_pred ceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-
Q 001178 950 EKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF- 1028 (1131)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~- 1028 (1131)
+...... .+..+.+...+...+..+.|+|||+.|+++.
T Consensus 460 ~~~~~~~-----------------------------------------~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~ 498 (543)
T 1nir_A 460 DAKYQVL-----------------------------------------PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVW 498 (543)
T ss_dssp TSCCEEE-----------------------------------------CHHHHHCCCSSCCEEEEEEECSSSSEEEEEEE
T ss_pred CCCeEEe-----------------------------------------echhhcccCCCCCceEeccCCCCCCEEEEEee
Confidence 5321100 0001111111256889999999999888773
Q ss_pred ----cCCcEEEEECCCCceeeEecCC
Q 001178 1029 ----TDGSIGVFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 1029 ----~dg~i~vwd~~~~~~~~~~~~~ 1050 (1131)
.|+.|.|||..+++++..+...
T Consensus 499 ~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 499 NGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp CCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred cCCCCCCeEEEEECCCceEEEeecCC
Confidence 4799999999999999888753
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.1e-26 Score=265.18 Aligned_cols=248 Identities=8% Similarity=-0.016 Sum_probs=174.7
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-----
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP----- 419 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp----- 419 (1131)
.|...+....+++++. +||+|+.|++|+|||+.+++......+ ..+.+|.+.|.+++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~--------------~~~~gH~~~v~~v~~~p~~~~~ 151 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVL--------------GGKSGHHNFVNDIDIADVYSAD 151 (393)
T ss_dssp ----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEE--------------CTTTSCSSCEEEEEEEEEECTT
T ss_pred ccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeee--------------cccCCCCCceEEEEEccccccc
Confidence 4555666666777776 799999999999999998876432111 24789999999999998
Q ss_pred ---CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEE---
Q 001178 420 ---DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQ--- 492 (1131)
Q Consensus 420 ---dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~--- 492 (1131)
||++||+|+.|++|+|||+.++.... .+.+|..+|.+++|+|++.. +|++++.|++|++|| .+++....
T Consensus 152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 152 NRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp CSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-------
T ss_pred cCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccc
Confidence 89999999999999999998876443 56789999999999999865 799999999999999 55543221
Q ss_pred ----------------------ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEE-
Q 001178 493 ----------------------FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLY- 549 (1131)
Q Consensus 493 ----------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~- 549 (1131)
..+|...+.++.|.. +++..+++++.|+++++||+........+..+...+..+.+
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 236778888888863 56789999999999999999876655554444433333332
Q ss_pred -----------------cc-CCC-EEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCC
Q 001178 550 -----------------SA-DGS-RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN 610 (1131)
Q Consensus 550 -----------------s~-~g~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 610 (1131)
.| .+. ++++++. ++.|++||..+++....+.+|.. .|.+++|+|+|++|++++.+|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~----Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQ----HGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETT----TTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSE
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECC----CCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCC
Confidence 22 233 4445543 89999999999998888887665 899999999999999998776
Q ss_pred cEEEEEcC
Q 001178 611 QIKFWDMD 618 (1131)
Q Consensus 611 ~i~iwd~~ 618 (1131)
+.+|.+.
T Consensus 382 -v~lvrL~ 388 (393)
T 4gq1_A 382 -VLLTRLM 388 (393)
T ss_dssp -EEEEEEG
T ss_pred -eEEEEEe
Confidence 6666553
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=1.1e-24 Score=257.29 Aligned_cols=274 Identities=11% Similarity=0.099 Sum_probs=214.4
Q ss_pred EEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceecc-CCCCCEEEEEEcCCCCEEEEEeCCCe
Q 001178 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK-DSSISVSRVAWSPDGNFIGVAFTKHL 432 (1131)
Q Consensus 354 ~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~spdg~~las~~~d~~ 432 (1131)
+|+|+++ ++++++.|++|.+||..+++.+.. +. ++. +.+++|+|||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 3789886 789999999999999999987652 33 443 889999999999999999999
Q ss_pred EEEEEe--cCCCccceeeeeecCcCCeeEEEEec----CCCceEEEEEc-CCCcEEEEe-CCCceeEEecCC--------
Q 001178 433 IHLYTY--QGSNDLCQSLEIDAHVGGVNDLAFSY----PNKQLCIVTCG-DDKLIRVWD-LSGRKLFQFEGH-------- 496 (1131)
Q Consensus 433 i~vwd~--~~~~~~~~~~~~~~h~~~V~~l~~s~----d~~~~~l~s~s-~d~~i~iwd-~~~~~~~~~~~h-------- 496 (1131)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.||| .+++++..+..+
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7765443 444 445689999999 999 566666 589999999 888888877642
Q ss_pred --cc-CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE--EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 497 --EA-PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV--DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 497 --~~-~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
.. .+.++.+++.. ..++++...++.|.+||+.+.+... .+ .+...+..+.|+|+|+++++++. .++.|.+
T Consensus 276 ~~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~---~~~~v~v 350 (543)
T 1nir_A 276 YHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAAN---NSNKVAV 350 (543)
T ss_dssp EESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEG---GGTEEEE
T ss_pred cccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEec---CCCeEEE
Confidence 22 68888887643 3677788899999999998765433 33 24556788999999999887653 2678999
Q ss_pred EeCCCCeeeEEEec----ccCCceEEEEEeCC-CCEEEEEE-cCCcEEEEEcCC-------CeEEEEEeccCCCCCcceE
Q 001178 572 WNESEGALKRTYIG----FRKKSAGVVQFDTT-RNRILAAG-EDNQIKFWDMDN-------VNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 572 wd~~~~~~~~~~~~----~~~~~v~~~~~s~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~i~~v 638 (1131)
||..+++++..+.. |.. ....+ ++|+ +..++++. .|++|.+||+.+ .+.++.+..++. .+..+
T Consensus 351 ~D~~tg~l~~~i~~g~~ph~g-~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~v 426 (543)
T 1nir_A 351 IDSKDRRLSALVDVGKTPHPG-RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFI 426 (543)
T ss_dssp EETTTTEEEEEEECSSSBCCT-TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCE
T ss_pred EECCCCeEEEeeccCCCCCCC-CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceEE
Confidence 99999999988874 222 12222 5777 44555554 589999999998 889999987764 57889
Q ss_pred EEcCCCCEEEEEEC-------CCcEEEEecCCC
Q 001178 639 RFNKEGNLLVVTTA-------DQGIKILANADG 664 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~-------dg~i~iw~~~~~ 664 (1131)
.++|++++|++++. +++|.+||+.++
T Consensus 427 ~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 427 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred EcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 99999999999872 679999998776
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.8e-23 Score=239.59 Aligned_cols=284 Identities=10% Similarity=0.050 Sum_probs=217.3
Q ss_pred CCcEEEEEEecCCCcEEEEEc----CCC----eEEEEEC--CCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGC----GDG----EITLWDV--GLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
...|...+|++.|..++++|+ .|| +|+|||+ .+++.+... .+.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHH
Confidence 357888899999988888886 467 8999999 888765321 2456777777777
Q ss_pred EcC--------------CCCEEEEEeCC------CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC
Q 001178 417 WSP--------------DGNFIGVAFTK------HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD 476 (1131)
Q Consensus 417 ~sp--------------dg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~ 476 (1131)
+++ .+..++.++.+ +.|++||+.++. . ..+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~---~~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-Q---FVVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-C---EEEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-C---EEEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 664 26677766654 799999998643 3 25778999999999999999 7888887
Q ss_pred CC---cEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEE-EEecCCe--EEEEeCCCCceeEEecCCCceEEEEEE
Q 001178 477 DK---LIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIF-STAVDGK--IKAWLYDNVGSRVDYDAPGLWCTTMLY 549 (1131)
Q Consensus 477 d~---~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~ 549 (1131)
|+ .|++|| .+++. ..+..|...+.+++|+| +++.|+ +++.|+. |++||++++.. ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~-~~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcE-EEeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 999999 55554 46777888999999965 556666 6666654 99999987654 456667778999999
Q ss_pred ccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC---CcEEEEEcCCCeEEEEE
Q 001178 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED---NQIKFWDMDNVNMLTST 626 (1131)
Q Consensus 550 s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~ 626 (1131)
+|||++|++++. .++...|++||..+++.. .+.. +...+..++|+|+|++|++++.+ +.|++||+.+++.. .+
T Consensus 275 spdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~-~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l 350 (415)
T 2hqs_A 275 FPDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL 350 (415)
T ss_dssp CTTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC
T ss_pred CCCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEec-CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Ee
Confidence 999999998873 233448999999887643 3333 23467889999999999988764 58999999988764 33
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEECCC---cEEEEecCCC
Q 001178 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQ---GIKILANADG 664 (1131)
Q Consensus 627 ~~~~~~~~i~~v~~sp~~~~l~~~~~dg---~i~iw~~~~~ 664 (1131)
..+ . .+.+++|+|+|++|++++.++ .|++|++..+
T Consensus 351 ~~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 351 SST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp CCS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred cCC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 322 2 689999999999999988877 7899987543
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.1e-22 Score=254.11 Aligned_cols=303 Identities=12% Similarity=0.087 Sum_probs=209.1
Q ss_pred CCcEEEEEEecCCCcEEEEEcC-CC-----eEEEEECCCCcccccccceeec-----ccccccceeceeccCCCCCEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCG-DG-----EITLWDVGLRERLVSKPFKIWD-----MSNCSMMLQAAIVKDSSISVSRV 415 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~-dg-----~v~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~~ 415 (1131)
...|++++|||||++ |++++. |+ .|++||+.+++........-.. +.......+...-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 557999999999995 777776 88 9999999998764311100000 00000000000000001347899
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEecCCC--ccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEE
Q 001178 416 AWSPDGNFIGVAFTKHLIHLYTYQGSN--DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQ 492 (1131)
Q Consensus 416 ~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 492 (1131)
+|||||++|++++. +.|.+||+.++. ... .+..|...+.+++|||||+ .|+.++ ++.|++|| .+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999986 899999999872 222 3667888999999999999 677776 46999999 44544433
Q ss_pred ecCCccC----------------eEEEeecccCCccEEEEEecCC---------------------------------eE
Q 001178 493 FEGHEAP----------------VYSVCPHQKENIHFIFSTAVDG---------------------------------KI 523 (1131)
Q Consensus 493 ~~~h~~~----------------v~~~~~~~~~~~~~l~s~s~dg---------------------------------~i 523 (1131)
...+... +.+++|+ +||+.|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S--pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWA--PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEEC--TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEEC--CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 3333332 3667775 5668888887765 78
Q ss_pred EEEeCCC-CceeEEec--CCCceEEEEEEccCCCEEEEEee-cCCCCceEEEEeCCCCeeeEEEecccCC---ceEEEEE
Q 001178 524 KAWLYDN-VGSRVDYD--APGLWCTTMLYSADGSRLFSCGT-SKEGDSHLVEWNESEGALKRTYIGFRKK---SAGVVQF 596 (1131)
Q Consensus 524 ~~wd~~~-~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~ 596 (1131)
.+||+.+ ++...... .+...+..++| |||++|++++. ....+..|++||..+++....+..+... .+..++|
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 8999987 66544332 35668999999 99999998764 2234678999999999887777655432 2457899
Q ss_pred eCCCCEEEEEEcCCcEEEEEcC-CCeEEEEEeccCCCCCcceE-EEcCCCCEEEEEEC-CC--cEEEEecCC
Q 001178 597 DTTRNRILAAGEDNQIKFWDMD-NVNMLTSTEAEGGLPSLPRL-RFNKEGNLLVVTTA-DQ--GIKILANAD 663 (1131)
Q Consensus 597 s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~i~~v-~~sp~~~~l~~~~~-dg--~i~iw~~~~ 663 (1131)
+|+|+++++++.||.+++|.+. .+. ...+..+ ...+..+ .|+|+++.++..+. ++ .++||++..
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 9999988889999988888765 344 5544433 2356676 59999997765544 44 889998753
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=2.8e-22 Score=229.70 Aligned_cols=289 Identities=12% Similarity=0.076 Sum_probs=214.0
Q ss_pred cccCCCC----CcccccCCCccccee--eec-cCCCcEEEEEEec--------------CCCcEEEEEcC--C---CeEE
Q 001178 320 ATYPVPS----QQATWSLDDLPRAVA--CTM-HQGSSVVSMDFHP--------------FHHTLLVVGCG--D---GEIT 373 (1131)
Q Consensus 320 ~~~s~~~----~~~~~~~~~~~~~~~--~~~-~h~~~V~~~~fsp--------------dg~~llasg~~--d---g~v~ 373 (1131)
+.+..+| .+.+|......++.+ ..+ .|...+..+++++ .+.++++++.. + +.|+
T Consensus 83 ~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~ 162 (415)
T 2hqs_A 83 VTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELR 162 (415)
T ss_dssp EEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEE
T ss_pred EEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEE
Confidence 3344566 577787721223333 334 4888888888886 25554444433 2 7999
Q ss_pred EEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCC---eEEEEEecCCCccceeeee
Q 001178 374 LWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH---LIHLYTYQGSNDLCQSLEI 450 (1131)
Q Consensus 374 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~---~i~vwd~~~~~~~~~~~~~ 450 (1131)
+||+.++... .+.+|...|.+++|||||++||+++.++ .|++||+.+++.. .+
T Consensus 163 i~d~~g~~~~--------------------~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~----~l 218 (415)
T 2hqs_A 163 VSDYDGYNQF--------------------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QV 218 (415)
T ss_dssp EEETTSCSCE--------------------EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EE
T ss_pred EEcCCCCCCE--------------------EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE----Ee
Confidence 9999754322 3567889999999999999999999875 9999999988643 36
Q ss_pred ecCcCCeeEEEEecCCCceEEE-EEcCCCc--EEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEec-CC--eEE
Q 001178 451 DAHVGGVNDLAFSYPNKQLCIV-TCGDDKL--IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DG--KIK 524 (1131)
Q Consensus 451 ~~h~~~V~~l~~s~d~~~~~l~-s~s~d~~--i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~ 524 (1131)
..|...+.+++|+|||+. |+ +++.|+. |++||..+.....+..|...+.+++|+| +++.|++++. ++ .|.
T Consensus 219 ~~~~~~~~~~~~spdg~~--la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp--dg~~l~~~s~~~g~~~i~ 294 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSK--LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAFTSDQAGRPQVY 294 (415)
T ss_dssp ECCSSCEEEEEECTTSSE--EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT--TSSEEEEEECTTSSCEEE
T ss_pred ecCCCcccCEEEcCCCCE--EEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECC--CCCEEEEEECCCCCcEEE
Confidence 678889999999999994 55 7766655 9999954445577888999999999964 5678887775 45 677
Q ss_pred EEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEE
Q 001178 525 AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRIL 604 (1131)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 604 (1131)
+||+.++.. ..+..+...+.+++|+|||++|++++.. +++..|++||+.+++.. .+..+ . .+..++|+|++++|+
T Consensus 295 ~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~-~g~~~i~~~d~~~~~~~-~l~~~-~-~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 295 KVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLSST-F-LDETPSLAPNGTMVI 369 (415)
T ss_dssp EEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTCCEE-ECCCS-S-SCEEEEECTTSSEEE
T ss_pred EEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECc-CCceEEEEEECCCCCEE-EecCC-C-CcCCeEEcCCCCEEE
Confidence 778877653 3445566789999999999999988752 23579999999988764 34433 2 788999999999999
Q ss_pred EEEcCC---cEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCC
Q 001178 605 AAGEDN---QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1131)
Q Consensus 605 ~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~ 644 (1131)
+++.++ .|++||+..+ ....+..+. ..|.+++|+|..
T Consensus 370 ~~s~~~~~~~l~~~d~~g~-~~~~l~~~~--~~v~~~~~~~~~ 409 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVSTDGR-FKARLPATD--GQVKFPAWSPYL 409 (415)
T ss_dssp EEEEETTEEEEEEEETTSC-CEEECCCSS--SEEEEEEECCCC
T ss_pred EEEcCCCccEEEEEECCCC-cEEEeeCCC--CCCcCCcccccc
Confidence 988777 7999998754 445555443 379999999964
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=1.1e-21 Score=245.09 Aligned_cols=244 Identities=11% Similarity=0.042 Sum_probs=184.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CC-----eEEEEEecCCCccceeeeeecCc------------------------CCee
Q 001178 409 SISVSRVAWSPDGNFIGVAFT-KH-----LIHLYTYQGSNDLCQSLEIDAHV------------------------GGVN 458 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~-d~-----~i~vwd~~~~~~~~~~~~~~~h~------------------------~~V~ 458 (1131)
...|.+++|||||++|++++. |+ .|.+||+.+++... .+..|. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 457999999999999999998 88 89999999986432 222222 2388
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEeCCCc---eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE
Q 001178 459 DLAFSYPNKQLCIVTCGDDKLIRVWDLSGR---KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV 535 (1131)
Q Consensus 459 ~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~ 535 (1131)
+++|||||+ +|++++. +.|++||..+. .+..+..|...+..++|+| ||++|++++ ++.|++||+.++....
T Consensus 113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999 6777765 89999995444 6677888888999999964 668888877 5699999998866554
Q ss_pred EecCCCce----------------EEEEEEccCCCEEEEEeecCC-----------------------------CCceEE
Q 001178 536 DYDAPGLW----------------CTTMLYSADGSRLFSCGTSKE-----------------------------GDSHLV 570 (1131)
Q Consensus 536 ~~~~~~~~----------------v~~~~~s~~g~~l~~~~~~~~-----------------------------~~~~i~ 570 (1131)
....+... +..+.|+|||++|++++.+.. ....|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33333221 477999999999999875221 112789
Q ss_pred EEeCCC-CeeeEEEec-ccCCceEEEEEeCCCCEEEEEEc-----CCcEEEEEcCCCeEEEEEeccCCC--CCcceEEEc
Q 001178 571 EWNESE-GALKRTYIG-FRKKSAGVVQFDTTRNRILAAGE-----DNQIKFWDMDNVNMLTSTEAEGGL--PSLPRLRFN 641 (1131)
Q Consensus 571 iwd~~~-~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~--~~i~~v~~s 641 (1131)
+||+.+ ++....... .+...+..++| |||++|++++. +..|++||+.+++....+..+... ..+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 876544332 23346888999 99999987664 567999999999877766554321 135689999
Q ss_pred CCCCEEEEEECCCcEEEEecC
Q 001178 642 KEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 642 p~~~~l~~~~~dg~i~iw~~~ 662 (1131)
|||+++++++.+|.++||.+.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEEC
T ss_pred CCCeEEEEecCCCccEEEEEc
Confidence 999999999999988888764
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=1.1e-22 Score=253.20 Aligned_cols=287 Identities=9% Similarity=0.090 Sum_probs=207.1
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCC---CEEEEEEcCCCCEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSI---SVSRVAWSPDGNFI 424 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~spdg~~l 424 (1131)
..+.+++|||||+ ++++ +.||+|++||+.+++... ++.+|.. .|.+++|||||++|
T Consensus 17 ~~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l 75 (723)
T 1xfd_A 17 IHDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYA 75 (723)
T ss_dssp CCCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEE
T ss_pred ccccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEE
Confidence 3467889999998 4666 689999999999987643 3445554 49999999999999
Q ss_pred EEEeCC---------CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEec
Q 001178 425 GVAFTK---------HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE 494 (1131)
Q Consensus 425 as~~~d---------~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~ 494 (1131)
|+++.+ +.|.+||+.+++. .......+|...+..++|||||+ .|+.++. +.|++|| .+++......
T Consensus 76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEec
Confidence 999874 7888999999875 22223345666699999999999 5777665 7999999 5666555444
Q ss_pred CCccCe------------------EEEeecccCCccEEEEEecCC----------------------------------e
Q 001178 495 GHEAPV------------------YSVCPHQKENIHFIFSTAVDG----------------------------------K 522 (1131)
Q Consensus 495 ~h~~~v------------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~ 522 (1131)
.+...+ .+++|+ +||+.|++++.|+ .
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~S--pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 229 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWS--PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSIS 229 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEEC--TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEE
T ss_pred CCCCCceECcccceeEEEEeccCcceEEEC--CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeE
Confidence 444333 678885 5668888887553 7
Q ss_pred EEEEeCCCCceeEEecCC------CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCce----E
Q 001178 523 IKAWLYDNVGSRVDYDAP------GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSA----G 592 (1131)
Q Consensus 523 i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v----~ 592 (1131)
|++||+.++.....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..++...+ .
T Consensus 230 l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 309 (723)
T 1xfd_A 230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNE 309 (723)
T ss_dssp EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCC
T ss_pred EEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCC
Confidence 999999887755555543 567899999999999877765444467899999999987776654433333 3
Q ss_pred EEEEeCCCCEEEE--EEcCC------cEEEEE-cCCCeE--EEEEeccCCCCCcce-EEEcCCCCEEEEEECC---CcEE
Q 001178 593 VVQFDTTRNRILA--AGEDN------QIKFWD-MDNVNM--LTSTEAEGGLPSLPR-LRFNKEGNLLVVTTAD---QGIK 657 (1131)
Q Consensus 593 ~~~~s~~~~~l~~--~~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~i~~-v~~sp~~~~l~~~~~d---g~i~ 657 (1131)
.++|+|||+.|+. +..++ .|++|| ..++.. ...+... + ..+.. ++|+|||+.|+..+.+ +.++
T Consensus 310 ~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 387 (723)
T 1xfd_A 310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRRQ 387 (723)
T ss_dssp CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCCE
T ss_pred CceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcceE
Confidence 6899999997765 44566 577777 344441 3333221 1 13444 6899999999877665 7889
Q ss_pred EEecCC
Q 001178 658 ILANAD 663 (1131)
Q Consensus 658 iw~~~~ 663 (1131)
+|++..
T Consensus 388 l~~~~~ 393 (723)
T 1xfd_A 388 LYSANT 393 (723)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 998754
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=1.2e-21 Score=244.09 Aligned_cols=386 Identities=10% Similarity=0.074 Sum_probs=250.4
Q ss_pred EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCC--ceEEEEEeCCCCEEEEEEcC---------CcE
Q 001178 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK--SAGVVQFDTTRNRILAAGED---------NQI 612 (1131)
Q Consensus 544 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d---------g~i 612 (1131)
+.+++|+|||+++++ +. ++.|++||..+++....+..+... .+..++|+|||++|++++.+ +.|
T Consensus 19 ~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 567899999997765 33 779999999999888777665431 38899999999999998864 788
Q ss_pred EEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccc
Q 001178 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAV 692 (1131)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1131)
++||+.+++.........+...+..++|+|||+.|+.++. +.|++|++.++.. .+....+...+
T Consensus 94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~-------------- 157 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGV-------------- 157 (723)
T ss_dssp EEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTT--------------
T ss_pred EEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCc--------------
Confidence 8999999876322222233334889999999999999886 7999999876621 11000000000
Q ss_pred eecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEE
Q 001178 693 VTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772 (1131)
Q Consensus 693 ~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 772 (1131)
+..+. .-|-.. .+-...+..
T Consensus 158 ---------------------------------------~~~g~-----~~~v~~----------------ee~~~~~~~ 177 (723)
T 1xfd_A 158 ---------------------------------------IYNGL-----SDWLYE----------------EEILKTHIA 177 (723)
T ss_dssp ---------------------------------------EEEEE-----CCHHHH----------------HTTSSSSEE
T ss_pred ---------------------------------------eECcc-----cceeEE----------------EEeccCcce
Confidence 00000 000000 001224578
Q ss_pred EEeecCCceEEEeeec-ceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEE
Q 001178 773 LLYTNSGIGILALWSN-GVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA 851 (1131)
Q Consensus 773 l~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 851 (1131)
++|||||+.|++++.+ +.+.+|++.... ..+...+..+.|+++|.. .
T Consensus 178 ~~~SpDg~~la~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~G~~---~ 225 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAINDSRVPIMELPTYT-----------------------------GSIYPTVKPYHYPKAGSE---N 225 (723)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCS-----------------------------SSSSCCCEEEECCBTTSC---C
T ss_pred EEECCCCCEEEEEEECCCccceEEeeccC-----------------------------CcCCCcceeccCCCCCCC---C
Confidence 9999999999988865 456666653210 012234678899888863 2
Q ss_pred eCCeEEEEECCCceeEEEEeCC------CCCeeEEEEeCCCCcEEEEEeCC----CcEEEEEeecceeEEeeccc-ccCe
Q 001178 852 GGGKVSLFNMMNFKVMTTFMSP------PPASTFLAFHPQDNNIIAIGMED----STIQIYNVRVDEVKTKLKGH-QKHI 920 (1131)
Q Consensus 852 ~dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~~la~g~~d----g~I~iwd~~~~~~~~~~~~h-~~~V 920 (1131)
.+..|++||+.+++....+..+ ...+..++||| |+++|++.... ..|++||+.++++...+..+ .+.+
T Consensus 226 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 304 (723)
T 1xfd_A 226 PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWL 304 (723)
T ss_dssp CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred CeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEE
Confidence 2457999999998876666654 55789999999 88888776533 57999999998877666543 3444
Q ss_pred e----EEEEccCCCEEEE--EeCCC------cEEEEE-cCCCceeeeeeeecCCCCCCCCceE-EEEcCCCcEEEEE-eC
Q 001178 921 T----GLAFSTNLNILVS--SGSDA------QLIFWN-TDTWEKRKSIAIQLPAGKLPVGETR-VQFHSDQVRLLVN-HE 985 (1131)
Q Consensus 921 ~----~l~~s~dg~~l~s--~~~Dg------~v~lwd-~~~~~~~~~~~~~~~~~~~~~~v~~-v~~s~d~~~l~~~-~d 985 (1131)
. .++|||||+.|+. ...|+ .|.+|| ..+++... ......+. ..+.. ++|+|||+.|+.. .+
T Consensus 305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~ 380 (723)
T 1xfd_A 305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN--IQSITSGD--WDVTKILAYDEKGNKIYFLSTE 380 (723)
T ss_dssp CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC--CCBSCCSS--SCEEEEEEEETTTTEEEEEESS
T ss_pred eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccc--eeEeecCC--eEEEeeeEEcCCCCEEEEEEcC
Confidence 3 8899999998775 45666 566777 34432000 01111111 23343 6999999999764 33
Q ss_pred ---CeEEEEeCCCcc--cceeeecCCCCCCCeEEEEEccCCCEEEEEecC-C--cEEEEECCCCceeeEe
Q 001178 986 ---TQLAIYDGSKME--CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-G--SIGVFDADSLRLRCRI 1047 (1131)
Q Consensus 986 ---~~i~vwd~~~~~--~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-g--~i~vwd~~~~~~~~~~ 1047 (1131)
+.+++|++.... ....+.....+...+..++|||||++|+..... + ...+++..++..+..+
T Consensus 381 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 381 DLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp SCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred CCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 678999886432 233333211125678899999999988876532 2 3445666555544443
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=1.9e-20 Score=208.69 Aligned_cols=280 Identities=10% Similarity=0.058 Sum_probs=202.3
Q ss_pred EEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeC-CC
Q 001178 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT-KH 431 (1131)
Q Consensus 353 ~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~-d~ 431 (1131)
..|.+++.+++++++.++.|.+||..+++.... ...+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777777889999999999999999887642 22345556 9999999997776665 88
Q ss_pred eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC-C--cEEEEe-CCCceeEEecCCccCeEEEeecc
Q 001178 432 LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-K--LIRVWD-LSGRKLFQFEGHEAPVYSVCPHQ 507 (1131)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d-~--~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~ 507 (1131)
.|.+||+.+++.. ...+..+..+..+++|+|||+ +++++..+ + .|.+|| .+++.+..+.. .....+++|+|
T Consensus 63 ~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~sp 137 (331)
T 3u4y_A 63 TLVQIETQLEPPK--VVAIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISP 137 (331)
T ss_dssp EEEEEECSSSSCE--EEEEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECT
T ss_pred eEEEEECCCCcee--EEecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECC
Confidence 9999999988751 224555666666699999999 56655555 3 899999 67777776654 34568888865
Q ss_pred cCCccEE-EEEecCCe-EEEEeCCCCceeE----EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee--
Q 001178 508 KENIHFI-FSTAVDGK-IKAWLYDNVGSRV----DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL-- 579 (1131)
Q Consensus 508 ~~~~~~l-~s~s~dg~-i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~-- 579 (1131)
+++++ ++...++. |.+|+++...... ...........++|+|+|+++++++. .++.|.+||+.+++.
T Consensus 138 --dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 138 --NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp --TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred --CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 44544 45556688 9999988654432 22233456899999999998777653 378999999999888
Q ss_pred -eEEEecccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeE--EEEEecc--CCCC---CcceEEEcCCCCEEEEE
Q 001178 580 -KRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNM--LTSTEAE--GGLP---SLPRLRFNKEGNLLVVT 650 (1131)
Q Consensus 580 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~---~i~~v~~sp~~~~l~~~ 650 (1131)
+..+... ..+..++|+|+++++++++ .++.|.+||+.+++. +..+... .... ....++|+|++++|+++
T Consensus 213 ~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 213 LLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred eeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 7777643 3567899999999777655 578899999999887 4433322 1111 12458999999988766
Q ss_pred EC-CCcEEEEecCCC
Q 001178 651 TA-DQGIKILANADG 664 (1131)
Q Consensus 651 ~~-dg~i~iw~~~~~ 664 (1131)
+. ++.|.+|++...
T Consensus 291 ~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 291 ANISRELKVFTISGK 305 (331)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred cCCCCcEEEEEecCC
Confidence 65 569999998765
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=1.3e-20 Score=233.77 Aligned_cols=237 Identities=9% Similarity=-0.001 Sum_probs=165.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEecCCCcc-ceeeeeecCc-----------------CCeeEEEEecCCCceEEEE
Q 001178 412 VSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL-CQSLEIDAHV-----------------GGVNDLAFSYPNKQLCIVT 473 (1131)
Q Consensus 412 V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~-----------------~~V~~l~~s~d~~~~~l~s 473 (1131)
+..+.|+ |..+++++.|+ | +||+.+++.+ .. +..|. ..|.+++|+|| +. ++++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~-~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GL-VVLF 98 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-TE-EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-Ce-EEEE
Confidence 4457788 66777777788 8 9999998752 32 22222 56999999999 52 3444
Q ss_pred EcCCCcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCC-----CceeEEecCCCce-----
Q 001178 474 CGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-----VGSRVDYDAPGLW----- 543 (1131)
Q Consensus 474 ~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-----~~~~~~~~~~~~~----- 543 (1131)
. ++.|++||..+.....+..+...+.+++|+| +|+.|+++ .|+.|++|++.+ ++...........
T Consensus 99 ~--~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 99 T--QGGLVGFDMLARKVTYLFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp E--TTEEEEEETTTTEEEEEECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred E--CCEEEEEECCCCceEEccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 3 5999999955555556666777888888854 66788874 789999999987 5544333322222
Q ss_pred ---------EEEEEEccCCCEEEEEeecC-----------------------------CCCceEEEEeCCCCeeeEEEec
Q 001178 544 ---------CTTMLYSADGSRLFSCGTSK-----------------------------EGDSHLVEWNESEGALKRTYIG 585 (1131)
Q Consensus 544 ---------v~~~~~s~~g~~l~~~~~~~-----------------------------~~~~~i~iwd~~~~~~~~~~~~ 585 (1131)
+.++.|+|||++|++++.+. ..+..|++||+.+++.......
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 47899999999999987321 1357899999998886554432
Q ss_pred -ccCCceEEEEEeCCCCEEEEEEcCC-----cEEEEEcCCCeEEEEEeccCC---CCCcceEEEcC--CCCEEEEEECCC
Q 001178 586 -FRKKSAGVVQFDTTRNRILAAGEDN-----QIKFWDMDNVNMLTSTEAEGG---LPSLPRLRFNK--EGNLLVVTTADQ 654 (1131)
Q Consensus 586 -~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~---~~~i~~v~~sp--~~~~l~~~~~dg 654 (1131)
.+...+..++|+|||++|++++.++ .|++||+.+++....+..... ...+..++|+| ||++++++..++
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 2334688999999999999988775 899999999843333322111 11346789999 999999888888
Q ss_pred cEEEEecC
Q 001178 655 GIKILANA 662 (1131)
Q Consensus 655 ~i~iw~~~ 662 (1131)
.++||.+.
T Consensus 334 ~~~l~~~~ 341 (706)
T 2z3z_A 334 WNHLYLYD 341 (706)
T ss_dssp SCEEEEEE
T ss_pred ccEEEEEE
Confidence 88888764
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=3.4e-20 Score=208.72 Aligned_cols=276 Identities=9% Similarity=0.090 Sum_probs=211.6
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEcC------CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGCG------DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
......+..++|+|+|++++++... ++.|.+||..+++.+.. +. ....+.+++|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~~~~ 96 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFGATI 96 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCSEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcceEEE
Confidence 3456688999999999875554433 67999999999876542 11 1234678999
Q ss_pred cCCCCEEEEE-eCCCeEEEEEecCCCccceeeeeecCcC---------CeeEEEEecCCCceEEEEE-cCCCcEEEEe-C
Q 001178 418 SPDGNFIGVA-FTKHLIHLYTYQGSNDLCQSLEIDAHVG---------GVNDLAFSYPNKQLCIVTC-GDDKLIRVWD-L 485 (1131)
Q Consensus 418 spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~---------~V~~l~~s~d~~~~~l~s~-s~d~~i~iwd-~ 485 (1131)
+|||++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+++. +++++ +.++.|.+|| .
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNT-VYISGIGKESVIWVVDGG 172 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTE-EEEEEESSSCEEEEEETT
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCE-EEEEecCCCceEEEEcCC
Confidence 9999966554 557999999999987544 2333322 2789999999995 23333 4688999999 7
Q ss_pred CCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC----CCceEEEEEEccCCCEEEEEee
Q 001178 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA----PGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
+++.+..+..+...+.+++|++ +++.+++++.++.|.+||..+.+....+.. +...+..++|+|+|++++++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred CCceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence 7888777775666678888854 567899999999999999998887766554 3446888999999998887763
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEE
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1131)
.++.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|
T Consensus 251 ---~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 321 (353)
T 3vgz_A 251 ---KAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLAL 321 (353)
T ss_dssp ---SSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEE
T ss_pred ---CCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEE
Confidence 26899999999999888877533 24589999999776665 68999999999999888876543 5789999
Q ss_pred cCCCCEEEEEECCC
Q 001178 641 NKEGNLLVVTTADQ 654 (1131)
Q Consensus 641 sp~~~~l~~~~~dg 654 (1131)
+|+|++++++..++
T Consensus 322 s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 322 SADGKTLYVSVKQK 335 (353)
T ss_dssp CTTSCEEEEEEECC
T ss_pred cCCCCEEEEEEccc
Confidence 99999887776654
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=6.7e-21 Score=236.30 Aligned_cols=321 Identities=10% Similarity=0.085 Sum_probs=219.0
Q ss_pred eeEEEEecCCCceEEEEEcCCCcEEEEe-CCCcee-EEecCCc-----------------cCeEEEeecccCCccEEEEE
Q 001178 457 VNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL-FQFEGHE-----------------APVYSVCPHQKENIHFIFST 517 (1131)
Q Consensus 457 V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~-~~~~~h~-----------------~~v~~~~~~~~~~~~~l~s~ 517 (1131)
+..+.|+ |. .+++++.|+ | +|| .+|+.+ ..+..|. ..|.+++|+++ +.++++
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd--~~~~~~- 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR--GLVVLF- 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT--TEEEEE-
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC--CeEEEE-
Confidence 5567888 55 466667777 8 999 677663 4444333 46899999764 344444
Q ss_pred ecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC-----CeeeEEEecccCCc--
Q 001178 518 AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-----GALKRTYIGFRKKS-- 590 (1131)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-----~~~~~~~~~~~~~~-- 590 (1131)
.++.|++||+.+++... +..+...+.+++|+|||++|+++. ++.|++||+.+ ++............
T Consensus 99 -~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 45999999998765543 344555688899999999999964 78999999988 77665444332211
Q ss_pred -----------eEEEEEeCCCCEEEEEE---------------------------------cCCcEEEEEcCCCeEEEEE
Q 001178 591 -----------AGVVQFDTTRNRILAAG---------------------------------EDNQIKFWDMDNVNMLTST 626 (1131)
Q Consensus 591 -----------v~~~~~s~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~ 626 (1131)
+..++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 47799999999999987 4467999999998865544
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEECCC-----cEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccc
Q 001178 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQ-----GIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLS 701 (1131)
Q Consensus 627 ~~~~~~~~i~~v~~sp~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 701 (1131)
....+...+..++|+|||+.|++++.++ .|.+||..++.. ...
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~------------------------------- 299 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF-VRT------------------------------- 299 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-EEE-------------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-eeE-------------------------------
Confidence 3323334688999999999999887665 788887655410 000
Q ss_pred ccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCce
Q 001178 702 KAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIG 781 (1131)
Q Consensus 702 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 781 (1131)
T Consensus 300 -------------------------------------------------------------------------------- 299 (706)
T 2z3z_A 300 -------------------------------------------------------------------------------- 299 (706)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC--CCCEEEEEe-CCeEEE
Q 001178 782 ILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK--NDSYVMSAG-GGKVSL 858 (1131)
Q Consensus 782 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~--dg~~la~~~-dg~i~v 858 (1131)
+...... .....+.+++|+| ||+++++++ ++.++|
T Consensus 300 ~~~~~~~------------------------------------------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l 337 (706)
T 2z3z_A 300 LFVETDK------------------------------------------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHL 337 (706)
T ss_dssp EEEEECS------------------------------------------SCCCCCSCCEECTTCSSEEEEEECTTSSCEE
T ss_pred EEEccCC------------------------------------------CeECccCCceeecCCCCEEEEEEccCCccEE
Confidence 0000000 0111234578899 999888877 678888
Q ss_pred EECC-CceeEEEEeCCCCCeeE-EEEeCCCCcEEE-EEeCCC----cEEEEEeecceeEEeecccccCeeEEEEccCCCE
Q 001178 859 FNMM-NFKVMTTFMSPPPASTF-LAFHPQDNNIIA-IGMEDS----TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNI 931 (1131)
Q Consensus 859 wd~~-~~~~~~~~~~~~~~i~~-l~~s~~~~~~la-~g~~dg----~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 931 (1131)
|.+. ++..+..+..+...+.. ++|+| +++.|+ +++.++ .|+.||+.+++ ...+. |...+.+++|||||++
T Consensus 338 ~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~ 414 (706)
T 2z3z_A 338 YLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSA 414 (706)
T ss_dssp EEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSE
T ss_pred EEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCE
Confidence 8776 66777777777777876 89999 666554 455544 56666666665 33343 6778999999999999
Q ss_pred EEEEeCC----CcEEEEEcCCCc
Q 001178 932 LVSSGSD----AQLIFWNTDTWE 950 (1131)
Q Consensus 932 l~s~~~D----g~v~lwd~~~~~ 950 (1131)
|+..+.+ +.|++||+.+++
T Consensus 415 l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 415 IIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEecCCCCCcEEEEEECCCCe
Confidence 8876544 469999998865
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=2.6e-20 Score=207.56 Aligned_cols=290 Identities=12% Similarity=0.057 Sum_probs=198.5
Q ss_pred EeecCCce-EEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe
Q 001178 774 LYTNSGIG-ILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG 852 (1131)
Q Consensus 774 ~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 852 (1131)
.|.+++.. +++...++.|.+||+.. ++...... .+...+ +++|+|||+++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~--~~~~~~-~~~~s~dg~~l~~~~ 58 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDT----------------------LEILNQIT--LGYDFV-DTAITSDCSNVVVTS 58 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTT----------------------CCEEEEEE--CCCCEE-EEEECSSSCEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcc----------------------cceeeeEE--ccCCcc-eEEEcCCCCEEEEEe
Confidence 44555555 45555688898887644 22211111 124445 999999999777665
Q ss_pred --CCeEEEEECCCcee-EEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC---cEEEEEeecceeEEeecccccCeeEEEEc
Q 001178 853 --GGKVSLFNMMNFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGMEDS---TIQIYNVRVDEVKTKLKGHQKHITGLAFS 926 (1131)
Q Consensus 853 --dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg---~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 926 (1131)
++.|.+||+.+++. ...+..+..+..+++|+| ++++++++..++ .|.+||+.+++.+..+..+ ....+++|+
T Consensus 59 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 59 DFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp STTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred CCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 68999999999988 777776666666699999 888888655553 8999999999988877654 446899999
Q ss_pred cCCCEEEEE-eCCCc-EEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCccc---c
Q 001178 927 TNLNILVSS-GSDAQ-LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKMEC---I 999 (1131)
Q Consensus 927 ~dg~~l~s~-~~Dg~-v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~---~ 999 (1131)
|||++|+++ ..++. |.+|++............... .......++|+|||++++++. ++.|++||+.+++. +
T Consensus 137 pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~ 214 (331)
T 3u4y_A 137 PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS--GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLL 214 (331)
T ss_dssp TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC--SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEE
T ss_pred CCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc--CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccccee
Confidence 999865554 55688 999999864432211111111 124578999999999776643 78999999999888 6
Q ss_pred eeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCce--eeEecCCccccCCCCCCCCccc-cEEEEEcCCC
Q 001178 1000 RQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRL--RCRIAPSAYMSQASPNSSQTVF-PLVVTSHPQE 1075 (1131)
Q Consensus 1000 ~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v~-~~~v~~~p~~ 1075 (1131)
..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+...... ...... .-.++|+|+
T Consensus 215 ~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~spd- 283 (331)
T 3u4y_A 215 NAVGT----NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI------DPRPLFGANQMALNKT- 283 (331)
T ss_dssp EEEEC----SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC------CCGGGTTCCCEEECTT-
T ss_pred eeccC----CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc------CCCCcccccceEECCC-
Confidence 66554 35678999999999887766 478899999999887 3333221100 011111 124789994
Q ss_pred CCeE-EEEecCCcEEEEecCCCccccccc
Q 001178 1076 PNQL-AVGLTDGSVKVIEPSETERKWGVA 1103 (1131)
Q Consensus 1076 ~~~l-~s~~~Dg~v~iW~~~~~~~~w~~~ 1103 (1131)
+.+| +++..++.|.+||+......+...
T Consensus 284 g~~l~v~~~~~~~v~v~d~~~~~~~~~~~ 312 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTISGKVVGYVAG 312 (331)
T ss_dssp SSEEEEEETTTTEEEEEETTSCEEEECTT
T ss_pred CCEEEEecCCCCcEEEEEecCCcccceec
Confidence 5555 555567799999998876544433
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=1.1e-19 Score=203.66 Aligned_cols=252 Identities=10% Similarity=0.070 Sum_probs=176.6
Q ss_pred CCCCeeEEEecCCCCEEEEEe-C-CeEEEEECC--Cce--eEEEEeCCCCCeeEEEEeCCCCcEEEEEe-CCCcEEEEEe
Q 001178 832 AEDVVPCVALSKNDSYVMSAG-G-GKVSLFNMM--NFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGM-EDSTIQIYNV 904 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~-d-g~i~vwd~~--~~~--~~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~I~iwd~ 904 (1131)
+...+.+++|+|+|++|++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|.+||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 456678899999999988887 4 899999997 554 344555444 789999999 777665555 5889999999
Q ss_pred ---ecceeEEeecccccCeeEEEEccCCCEEEEEe-CCCcEEEEEcCC-Cceeeee--eeecCCCCCCCCceEEEEcCCC
Q 001178 905 ---RVDEVKTKLKGHQKHITGLAFSTNLNILVSSG-SDAQLIFWNTDT-WEKRKSI--AIQLPAGKLPVGETRVQFHSDQ 977 (1131)
Q Consensus 905 ---~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~-~Dg~v~lwd~~~-~~~~~~~--~~~~~~~~~~~~v~~v~~s~d~ 977 (1131)
.+.+.+..+..+ ..+.+++|+|+|++|++++ .|+.|.+||+.+ ++..... ...... ...+..++|+|++
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~pdg 189 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE---GAGPRHMVFHPNE 189 (343)
T ss_dssp ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST---TCCEEEEEECTTS
T ss_pred CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC---CCCcceEEECCCC
Confidence 445555555544 4589999999999888877 899999999987 5432222 222221 2567889999999
Q ss_pred cEEEEE--eCCeEEEEeCCC--ccc--ceeeec---CCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECC--CC--ce
Q 001178 978 VRLLVN--HETQLAIYDGSK--MEC--IRQWVP---QDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDAD--SL--RL 1043 (1131)
Q Consensus 978 ~~l~~~--~d~~i~vwd~~~--~~~--~~~~~~---~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~--~~--~~ 1043 (1131)
++++++ .++.+++|++.. ++. ...... .......+.+++|+|||++|+++. .++.|.+||+. ++ +.
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK 269 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence 987664 478999999953 432 222221 111134677899999999887555 78999999998 33 33
Q ss_pred eeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEe-cCCcEEEEecCCCccccccc
Q 001178 1044 RCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGL-TDGSVKVIEPSETERKWGVA 1103 (1131)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~-~Dg~v~iW~~~~~~~~w~~~ 1103 (1131)
+..+.... . +..++|+| ++.+|++++ .|+.|.+|++....+++...
T Consensus 270 ~~~~~~~~----------~---~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 316 (343)
T 1ri6_A 270 EGFQPTET----------Q---PRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLLHEK 316 (343)
T ss_dssp EEEEECSS----------S---CCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred eeeecCCC----------c---cceEEECC-CCCEEEEecCCCCeEEEEEEcCCCceeeEc
Confidence 33332211 1 33588999 566676666 68999999776555544433
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=2.6e-20 Score=203.60 Aligned_cols=257 Identities=14% Similarity=0.125 Sum_probs=188.7
Q ss_pred EEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecC-CCc
Q 001178 365 VGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG-SND 443 (1131)
Q Consensus 365 sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~-~~~ 443 (1131)
.++.|++|++||+.+++... +..|...|.+++|+|||++|++++ ++.|.+||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 34668999999999877542 345788999999999999999987 78999999998 764
Q ss_pred cceeeeeecC-cCCeeEEEEecCCCceEEEEEc--CCCcEEEEe--CCCceeEEecCCccCeEEEeecccCCccEEE-EE
Q 001178 444 LCQSLEIDAH-VGGVNDLAFSYPNKQLCIVTCG--DDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIF-ST 517 (1131)
Q Consensus 444 ~~~~~~~~~h-~~~V~~l~~s~d~~~~~l~s~s--~d~~i~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~ 517 (1131)
.. ...+| ...+.+++|+||++ ++++++ .++..+||. ..+.....+..+. .+..++|++ +++.|+ ++
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~sp--dg~~l~~~~ 147 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSP--DGKSFTYCG 147 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECT--TSSEEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECC--CCCEEEEEE
Confidence 32 23344 46789999999999 677776 445566665 4555555565444 488888865 456665 78
Q ss_pred ecCCeEEEEeCCCC-ceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC-CCeeeEEEecccCCceEEEE
Q 001178 518 AVDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-EGALKRTYIGFRKKSAGVVQ 595 (1131)
Q Consensus 518 s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~ 595 (1131)
+.++.+++|+++.. .....+..+...+.++.|+|+|+++++++. .++.+.+|++. .+.....+..+. ..+..++
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~ 223 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSA-YGDWFPH 223 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCS-EEEEEEE
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCC-cccCCeE
Confidence 89999999997543 334455566678999999999999887763 14566777654 344555555544 3788899
Q ss_pred EeCCCCEEEEEEcC-----------CcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCC
Q 001178 596 FDTTRNRILAAGED-----------NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1131)
Q Consensus 596 ~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg 654 (1131)
|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|+++.|++++.+.
T Consensus 224 ~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999988765 569999999887644443323334789999999999998887653
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=2.8e-19 Score=200.26 Aligned_cols=273 Identities=13% Similarity=0.153 Sum_probs=190.4
Q ss_pred CcEEEEEcCCCeEEEEECCC-CcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCC-CeEEEEE
Q 001178 360 HTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK-HLIHLYT 437 (1131)
Q Consensus 360 ~~llasg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d-~~i~vwd 437 (1131)
++++++++.|+.|++||+.. ++.... ....|...+.+++|+|||++|++++.+ +.|.+|+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLT------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEE------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEe------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 45666668899999999963 322110 112466788999999999999988886 9999999
Q ss_pred ec--CCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeC-CCc---eeEEecCCccCeEEEeecccCCc
Q 001178 438 YQ--GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGR---KLFQFEGHEAPVYSVCPHQKENI 511 (1131)
Q Consensus 438 ~~--~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~-~~~---~~~~~~~h~~~v~~~~~~~~~~~ 511 (1131)
+. +++ ......+..+. .+.+++|+|+++. +++++..++.|.+||. .+. .+..+.. ...+.+++|++ ++
T Consensus 67 ~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~--dg 140 (343)
T 1ri6_A 67 IAPDDGA-LTFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP--DN 140 (343)
T ss_dssp ECTTTCC-EEEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT--TS
T ss_pred ecCCCCc-eeeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC--CC
Confidence 98 444 22333444443 7899999999994 3445556899999994 332 3333433 34578888854 55
Q ss_pred cEEEEEe-cCCeEEEEeCCC-CceeE----EecC-CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC--CCee--e
Q 001178 512 HFIFSTA-VDGKIKAWLYDN-VGSRV----DYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES--EGAL--K 580 (1131)
Q Consensus 512 ~~l~s~s-~dg~i~~wd~~~-~~~~~----~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~--~~~~--~ 580 (1131)
+.+++++ .++.|++||+.+ +.... .... ....+..++|+|+|+++++++. .++.|.+|++. +++. .
T Consensus 141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEE
T ss_pred CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEE
Confidence 6777776 899999999987 43321 2222 3446889999999998877652 27899999985 3443 2
Q ss_pred EEEeccc-----CCceEEEEEeCCCCEEEEEE-cCCcEEEEEcC--CC--eEEEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001178 581 RTYIGFR-----KKSAGVVQFDTTRNRILAAG-EDNQIKFWDMD--NV--NMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1131)
Q Consensus 581 ~~~~~~~-----~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~ 650 (1131)
..+.... ...+..++|+|++++++++. .++.|++|++. ++ +.+..+.... .+..++|+|+|++|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEEE
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEEe
Confidence 2332111 12455799999999887554 78999999998 33 3444444332 37899999999988888
Q ss_pred E-CCCcEEEEecC
Q 001178 651 T-ADQGIKILANA 662 (1131)
Q Consensus 651 ~-~dg~i~iw~~~ 662 (1131)
+ .++.+.+|++.
T Consensus 295 ~~~~~~v~v~~~d 307 (343)
T 1ri6_A 295 GQKSHHISVYEIV 307 (343)
T ss_dssp CTTTCEEEEEEEE
T ss_pred cCCCCeEEEEEEc
Confidence 8 58999999654
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=2.4e-19 Score=200.18 Aligned_cols=199 Identities=13% Similarity=0.108 Sum_probs=153.9
Q ss_pred eEEEecCCCCEEEEE-------------eCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001178 837 PCVALSKNDSYVMSA-------------GGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~-------------~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd 903 (1131)
.+++|+|||++++++ .++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d 160 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMD 160 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEE
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEE
Confidence 346677777666666 358899999999998888775 45688899999 78877777 68999999
Q ss_pred eecceeEEeecccccCeeEEEEccCCCEEEEEeCCC------------------------cEEEEEcCCCceeeeeeeec
Q 001178 904 VRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA------------------------QLIFWNTDTWEKRKSIAIQL 959 (1131)
Q Consensus 904 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg------------------------~v~lwd~~~~~~~~~~~~~~ 959 (1131)
+.+++.+..+..+.. ...+.|+|||+.|+..+.++ .|.+||+.+++.. .....
T Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~- 237 (337)
T 1pby_B 161 PEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR- 237 (337)
T ss_dssp TTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE-
T ss_pred CCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC-
Confidence 999988877765441 11337899998776554332 4689999987754 22221
Q ss_pred CCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 960 ~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
.....+..++|+|||++++++ ++.|++||+.+++.+..+... ..+.+++|+|||++|++++.++.|++||+.
T Consensus 238 ---~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 238 ---IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP----HSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp ---ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS----SCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred ---CCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC----CceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 112467789999999999988 799999999999888776543 467899999999999999999999999999
Q ss_pred CCceeeEecCC
Q 001178 1040 SLRLRCRIAPS 1050 (1131)
Q Consensus 1040 ~~~~~~~~~~~ 1050 (1131)
+++.+..+...
T Consensus 310 ~~~~~~~~~~~ 320 (337)
T 1pby_B 310 TLEKKGQVDLP 320 (337)
T ss_dssp TCCEEEEEECG
T ss_pred CCcEEEEEEcC
Confidence 99988887644
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=6.2e-19 Score=198.35 Aligned_cols=273 Identities=13% Similarity=0.115 Sum_probs=205.8
Q ss_pred ccceEEEEeecCCceEEEeee-------cceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEE
Q 001178 767 ASKVARLLYTNSGIGILALWS-------NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l 839 (1131)
...+..++++|+|+.+++++. ++.+.+||... ++.... + .....+..+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~----------------------~~~~~~-~--~~~~~~~~~ 94 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT----------------------LEVTQA-I--HNDLKPFGA 94 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT----------------------CCEEEE-E--EESSCCCSE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC----------------------CeEEEE-E--ecCCCcceE
Confidence 456778999999998888774 45676666433 322221 0 012346679
Q ss_pred EecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCC---------eeEEEEeCCCCcEEEEEe--CCCcEEEEEeec
Q 001178 840 ALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPA---------STFLAFHPQDNNIIAIGM--EDSTIQIYNVRV 906 (1131)
Q Consensus 840 ~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~---------i~~l~~s~~~~~~la~g~--~dg~I~iwd~~~ 906 (1131)
+|+|||++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++++++++ .++.|.+||..+
T Consensus 95 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 95 TINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTT
T ss_pred EECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCC
Confidence 9999999776665 589999999999998888765432 78899999 676666655 478899999999
Q ss_pred ceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--
Q 001178 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-- 984 (1131)
Q Consensus 907 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-- 984 (1131)
++.+..+..+...+.+++|+|||++|++++.++.|.+||+.+++....... ........+..++|+|++++++++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 174 IKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL--LDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp TEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC--CCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred CceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc--CCCCCCcccceEEECCCCCEEEEEeCC
Confidence 999888886667789999999999999999999999999999776544332 1111224577899999999887754
Q ss_pred CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecCCccccCCCCCCCCc
Q 001178 985 ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQT 1063 (1131)
Q Consensus 985 d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1131)
++.|.+||..+++.+..+.... ...++|+|||+++++++ .++.|.+||..+++.+..+....
T Consensus 252 ~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~------------ 314 (353)
T 3vgz_A 252 AAEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT------------ 314 (353)
T ss_dssp SSEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS------------
T ss_pred CCEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC------------
Confidence 5899999999999888776542 25689999999777666 68999999999999887765321
Q ss_pred cccEEEEEcCCCCCeEEEEecCC
Q 001178 1064 VFPLVVTSHPQEPNQLAVGLTDG 1086 (1131)
Q Consensus 1064 v~~~~v~~~p~~~~~l~s~~~Dg 1086 (1131)
.+..++|+| ++++|+++..++
T Consensus 315 -~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 315 -HPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp -EEEEEEECT-TSCEEEEEEECC
T ss_pred -CCCeEEEcC-CCCEEEEEEccc
Confidence 345689999 556565555553
No 147
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=9.2e-19 Score=200.88 Aligned_cols=314 Identities=15% Similarity=0.131 Sum_probs=200.8
Q ss_pred ccceEEEEeecCCceEEEeeecceeeEEeecCCCCC--CCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCC
Q 001178 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQN--PSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN 844 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d 844 (1131)
...+..+++++++..+++++.++ +++|+....... ..+.. ..+........ + .+...|.+++|+|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----~--~~~~~v~~l~~spd 103 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDP-----NKIVDKVQGLL----V--PMKFPIHHLALSCD 103 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCT-----TCEEECCCCEE----E--CCSSCEEEEEECTT
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCc-----ccccccCcccc----c--cCCCcccEEEEcCC
Confidence 34578899999999999988887 888775431110 00000 00000000000 1 35678999999999
Q ss_pred CCEEE----EEe-CCeEEEEECCCc--------ee---EEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce
Q 001178 845 DSYVM----SAG-GGKVSLFNMMNF--------KV---MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1131)
Q Consensus 845 g~~la----~~~-dg~i~vwd~~~~--------~~---~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~ 908 (1131)
|++|+ +++ |++|+|||+.++ +. +..+.+|...|.+++|+|+++.+||+++.||+|++||+.++.
T Consensus 104 g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~ 183 (434)
T 2oit_A 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV 183 (434)
T ss_dssp SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence 99999 566 799999998765 22 445567889999999999558999999999999999999988
Q ss_pred eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC-CCCCCCCceEEEEcCCCcEEEEEe--C
Q 001178 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP-AGKLPVGETRVQFHSDQVRLLVNH--E 985 (1131)
Q Consensus 909 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~-~~~~~~~v~~v~~s~d~~~l~~~~--d 985 (1131)
.+....+|...|++++|+|+|++|++++.||+|++||+. ++.......... ...+...+.+++|++++.++++.. +
T Consensus 184 ~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 184 KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 777778899999999999999999999999999999998 333222211111 111224789999999999887632 3
Q ss_pred C------eEEEEeCCCccc--c---eeeecC----CCCCCCeEEEEEccCCCEEEEEec-CCcEEEEECCCCc-ee--eE
Q 001178 986 T------QLAIYDGSKMEC--I---RQWVPQ----DVLSSPISSAAYSCNSQLIYATFT-DGSIGVFDADSLR-LR--CR 1046 (1131)
Q Consensus 986 ~------~i~vwd~~~~~~--~---~~~~~~----~~~~~~v~~i~~s~dg~~l~s~~~-dg~i~vwd~~~~~-~~--~~ 1046 (1131)
| .+++|++...+. . ..+... .....+-..+.+-+|.+++++++. .+.|.|....... .. ..
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~ 342 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWL 342 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEE
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEe
Confidence 2 389999986421 1 111111 011233344455588888877774 3446666543211 01 11
Q ss_pred ecCCc--cccCCCCCCCCccccEEEEE--cCCC------------CCeEEEEecCCcEEEEecCC
Q 001178 1047 IAPSA--YMSQASPNSSQTVFPLVVTS--HPQE------------PNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1047 ~~~~~--~~~~~~~~~~~~v~~~~v~~--~p~~------------~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
+.... .+|.. ......+++.+++ +..+ --.|.+-+.||.+..|.+-.
T Consensus 343 ~~d~~ra~lP~~--~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 343 LEDSSRAELPVT--DKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp ECGGGCCBCCBC--TTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccccccccCC--CCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 11111 11111 1122233333333 2211 12788889999999999865
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=7.7e-19 Score=196.08 Aligned_cols=301 Identities=11% Similarity=0.101 Sum_probs=201.9
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCc--eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc--
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL--WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR-- 587 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-- 587 (1131)
+++++++.++.|.+||+.+.+....+..... .+..++|+|+|+++++++. .++.|.+||..+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 4789999999999999998877766654332 4788999999988776653 26799999999999887776432
Q ss_pred --CCceEEEEEeCCCCEEEEEE------------cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC
Q 001178 588 --KKSAGVVQFDTTRNRILAAG------------EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 588 --~~~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
...+..++|+|+++++++++ .++.|++||+.+++.+..+.... .+..++|+|++++++++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC---CcceeEECCCCCEEEEe--C
Confidence 11456789999999998886 57999999999998887776532 57889999999988887 6
Q ss_pred CcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCcee
Q 001178 654 QGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRN 733 (1131)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 733 (1131)
+.|.+||+.++. ....+...... ....++|+
T Consensus 154 ~~i~~~d~~~~~-~~~~~~~~~~~--------------~~~~~s~d---------------------------------- 184 (337)
T 1pby_B 154 RDLHVMDPEAGT-LVEDKPIQSWE--------------AETYAQPD---------------------------------- 184 (337)
T ss_dssp SSEEEEETTTTE-EEEEECSTTTT--------------TTTBCCCB----------------------------------
T ss_pred CeEEEEECCCCc-EeeeeeccccC--------------CCceeCCC----------------------------------
Confidence 899999997762 21111100000 00022232
Q ss_pred ccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceee--EEeecCCCCCCCCccceee
Q 001178 734 LEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQK--LWKWNRTEQNPSGKATAAV 811 (1131)
Q Consensus 734 ~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~--iw~~~~~~~~~~~~~~~~~ 811 (1131)
|..+++.+..+... +|.................
T Consensus 185 ---------------------------------------------g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (337)
T 1pby_B 185 ---------------------------------------------VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT 219 (337)
T ss_dssp ---------------------------------------------CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEE
T ss_pred ---------------------------------------------ccEEeeeccCCCceeeeeecccccccccccccccc
Confidence 22222111111000 0100000000000000111
Q ss_pred eceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEE
Q 001178 812 APQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIA 891 (1131)
Q Consensus 812 ~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la 891 (1131)
.+.+|++.+++.....+ ..+...+.+++|+|||++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+| ++++|+
T Consensus 220 ~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~ 295 (337)
T 1pby_B 220 GLLTMDLETGEMAMREV-RIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVST-DGSTVW 295 (337)
T ss_dssp EEEEEETTTCCEEEEEE-EECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECT-TSCEEE
T ss_pred ceEEEeCCCCCceEeec-CCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEECC-CCCEEE
Confidence 23344555544331111 1245677889999999999988 799999999999988887643 4678999999 888888
Q ss_pred EEeCCCcEEEEEeecceeEEeeccccc
Q 001178 892 IGMEDSTIQIYNVRVDEVKTKLKGHQK 918 (1131)
Q Consensus 892 ~g~~dg~I~iwd~~~~~~~~~~~~h~~ 918 (1131)
+++.++.|++||+.+++.+..+..+.+
T Consensus 296 ~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 296 LGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp EESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred EEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 889999999999999988888765543
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=2.4e-19 Score=195.94 Aligned_cols=255 Identities=10% Similarity=0.068 Sum_probs=188.2
Q ss_pred CCCCcccccCCCcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCC-Ccccccccceeecccccccceec
Q 001178 324 VPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQA 402 (1131)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 402 (1131)
.++.+.+|.... .+......|...|.+++|+|||++ |++++ ++.|++||+.+ ++...
T Consensus 20 ~~~~i~~~d~~~--~~~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~------------------ 77 (297)
T 2ojh_A 20 MRSSIEIFNIRT--RKMRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEK------------------ 77 (297)
T ss_dssp CCEEEEEEETTT--TEEEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEE------------------
T ss_pred cceeEEEEeCCC--CceeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceE------------------
Confidence 344566676554 344455678999999999999995 66665 78999999998 76543
Q ss_pred eeccCC-CCCEEEEEEcCCCCEEEEEe--CCCeEEEEEec--CCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC
Q 001178 403 AIVKDS-SISVSRVAWSPDGNFIGVAF--TKHLIHLYTYQ--GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD 477 (1131)
Q Consensus 403 ~~~~~h-~~~V~~~~~spdg~~las~~--~d~~i~vwd~~--~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d 477 (1131)
+..+| ...|.+++|+|||++|++++ .++.+.||.+. ++. . ..+..+ ..+..++|+||++. ++++++.|
T Consensus 78 -~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~-~~~~~~~~spdg~~-l~~~~~~~ 150 (297)
T 2ojh_A 78 -VDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-P---RLMTKN-LPSYWHGWSPDGKS-FTYCGIRD 150 (297)
T ss_dssp -CCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-C---EECCSS-SSEEEEEECTTSSE-EEEEEEET
T ss_pred -eccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-e---EEeecC-CCccceEECCCCCE-EEEEECCC
Confidence 23344 47789999999999999998 44556666654 433 2 123333 34899999999994 34478889
Q ss_pred CcEEEEe--CCCceeEEecCCccCeEEEeecccCCccEEEEEe-cCCeEEEEeCC-CCceeEEecCCCceEEEEEEccCC
Q 001178 478 KLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDGKIKAWLYD-NVGSRVDYDAPGLWCTTMLYSADG 553 (1131)
Q Consensus 478 ~~i~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~g 553 (1131)
+.++||+ ..+.....+..|...+.+++|++ +++.++.++ .++.+++|+++ .......+..+...+..+.|+|+|
T Consensus 151 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 228 (297)
T 2ojh_A 151 QVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG 228 (297)
T ss_dssp TEEEEEEEETTTCCEEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS
T ss_pred CceEEEEEECCCCcceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC
Confidence 9999999 55666677888888999999965 556666655 69999999987 445556666677789999999999
Q ss_pred CEEEEEeecCC-------CCceEEEEeCCCCeeeEEE--ecccCCceEEEEEeCCCCEEEEEEcCC
Q 001178 554 SRLFSCGTSKE-------GDSHLVEWNESEGALKRTY--IGFRKKSAGVVQFDTTRNRILAAGEDN 610 (1131)
Q Consensus 554 ~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg 610 (1131)
++|++++.... ....|++||+.+++..... .++. ..+..++|+|++++|++++.+.
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQ-GTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEEST-TTSCSCCBCTTSSEEEEEEECC
T ss_pred CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCC-cccccceECCCCCEEEEEEecc
Confidence 99998875221 2367999999888664433 3433 3688899999999998887654
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=1.9e-19 Score=217.41 Aligned_cols=273 Identities=11% Similarity=0.037 Sum_probs=193.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcC-CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCG-DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+..+|++++|||||++ ||.++. ||+++||++.+++... +...+...|.+++|||| +.+
T Consensus 20 ~~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~-------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK-------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HHSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE-------------------CCSSCCSEECEECTTCS-EEE
T ss_pred hccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe-------------------eecccccccccccCCCC-eEE
Confidence 3457999999999996 666555 9999999987665432 12233468999999999 777
Q ss_pred EEEeC---CCeEEEEEecC--CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 425 GVAFT---KHLIHLYTYQG--SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 425 as~~~---d~~i~vwd~~~--~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
++++. +....+|.+.. ..... .+..+ ..+...+|+|||+.+++++++.|+.. +|| .+++. ..+..+..
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~-~~l~~~~~ 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGL-RELARLPG 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEE-EEEEEESS
T ss_pred EEeccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCce-EEEccCCcE-EEeecCCC
Confidence 77765 45667776654 22111 22222 23457799999987566666666554 999 55544 44433333
Q ss_pred CeEEEeecccCCccEEEEEecC----CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC
Q 001178 499 PVYSVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
.+++|+ +||+.|++++.+ +.|++||+++++.. .+..+...+..++|+|||+.|++... ++...|++||+
T Consensus 153 --~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 667775 567899988877 78999999877654 56677778999999999999995443 23348999999
Q ss_pred CCCeeeEEEecccCCceEEEE--------EeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCE
Q 001178 575 SEGALKRTYIGFRKKSAGVVQ--------FDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646 (1131)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~ 646 (1131)
.+++.. .+.++.. .+..+. |+|||..+++++.++.+++|++ ++.... .. ..+.+++|+ ++++
T Consensus 226 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~--~~v~~~~~s-dg~~ 295 (582)
T 3o4h_A 226 RDGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQ--GNHGRVVLW-RGKL 295 (582)
T ss_dssp TTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CS--SEEEEEEEE-TTEE
T ss_pred CCCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CC--CceEEEEec-CCEE
Confidence 988877 5554432 455555 9999988889999999999999 665441 11 357899999 9999
Q ss_pred EEEEECCCc---EEEEecC
Q 001178 647 LVVTTADQG---IKILANA 662 (1131)
Q Consensus 647 l~~~~~dg~---i~iw~~~ 662 (1131)
+++++.+.. +.+|+..
T Consensus 296 l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 296 VTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEETTEEEEEEEETTC
T ss_pred EEEEcCCCCCCeEEEEcCC
Confidence 888877644 5556543
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=2.9e-18 Score=192.22 Aligned_cols=249 Identities=12% Similarity=0.175 Sum_probs=167.9
Q ss_pred CCCeeEEEecCCCCEEEEEe---CCeEEEEECCCce--eEEEEeCCCCCeeEEEEeCCCCcEEEEEe-CCCcEEEEEeec
Q 001178 833 EDVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGM-EDSTIQIYNVRV 906 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~I~iwd~~~ 906 (1131)
...+..++|+|||++++++. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++..
T Consensus 39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~ 117 (347)
T 3hfq_A 39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAA 117 (347)
T ss_dssp CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECT
T ss_pred cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCC
Confidence 45567899999999444443 3789999998776 3444455677889999999 888777777 789999999962
Q ss_pred -c--eeEEeecc---------cccCeeEEEEccCCCEEEEEeCCCcEEEEEcC-CCceeeeeeeecCCCCCCCCceEEEE
Q 001178 907 -D--EVKTKLKG---------HQKHITGLAFSTNLNILVSSGSDAQLIFWNTD-TWEKRKSIAIQLPAGKLPVGETRVQF 973 (1131)
Q Consensus 907 -~--~~~~~~~~---------h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~~ 973 (1131)
+ +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ .....++|
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g---~~p~~~~~ 194 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG---FGPRHLVF 194 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT---CCEEEEEE
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC---CCCceEEE
Confidence 2 33333321 12348899999999977777778999999998 443322222222221 45678999
Q ss_pred cCCCcEEEEE--eCCeEEEEeCCC--ccc--ceeeecCCC---CCCCeEEEEEccCCCEEEEE-ecCCcEEEEECCC-C-
Q 001178 974 HSDQVRLLVN--HETQLAIYDGSK--MEC--IRQWVPQDV---LSSPISSAAYSCNSQLIYAT-FTDGSIGVFDADS-L- 1041 (1131)
Q Consensus 974 s~d~~~l~~~--~d~~i~vwd~~~--~~~--~~~~~~~~~---~~~~v~~i~~s~dg~~l~s~-~~dg~i~vwd~~~-~- 1041 (1131)
+|||+++++. .++.+++|++.. ++. +..+..... ....+..++|+|||++|+++ ..++.|.+|++.. +
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 9999977775 378899999874 442 222222110 01458899999999988554 4689999999973 2
Q ss_pred -ceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEec-CCcEEEEecCCCcc
Q 001178 1042 -RLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLT-DGSVKVIEPSETER 1098 (1131)
Q Consensus 1042 -~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~-Dg~v~iW~~~~~~~ 1098 (1131)
+.+..+..+ . ..+..++|+| ++++|++++. ++.|.+|++....+
T Consensus 275 ~~~~~~~~~~----------~--~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 275 LTLIQQISTE----------G--DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSG 320 (347)
T ss_dssp EEEEEEEECS----------S--SCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEeEEEecC----------C--CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCC
Confidence 333333211 1 1234689999 5667766665 58999997754443
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=222.90 Aligned_cols=378 Identities=11% Similarity=0.038 Sum_probs=239.7
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccC--CceEEEEEeCCCCEEEEEEc---------CCcEEE
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK--KSAGVVQFDTTRNRILAAGE---------DNQIKF 614 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~---------dg~i~i 614 (1131)
.+.|+|||+++++. . ++.|++||..+++....+..+.. ..+..++|||||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 67899999655543 2 78999999999988776665432 13788999999999998876 789999
Q ss_pred EEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCcccee
Q 001178 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVT 694 (1131)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1131)
||+.+++.+...... ..+..++|||||+.|+.+. ++.|++|++.++........++..
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~------------------ 152 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN------------------ 152 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT------------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC------------------
Confidence 999998763111111 2588999999999999886 789999998766211000000000
Q ss_pred cccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEE
Q 001178 695 TITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLL 774 (1131)
Q Consensus 695 ~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 774 (1131)
.++.|.. -|-... ........++
T Consensus 153 ------------------------------------~v~~g~~-----~~v~~e----------------e~~~~~~~~~ 175 (719)
T 1z68_A 153 ------------------------------------KIFNGIP-----DWVYEE----------------EMLATKYALW 175 (719)
T ss_dssp ------------------------------------TEEESSC-----CHHHHH----------------HTTCSSCCEE
T ss_pred ------------------------------------CeEcccc-----cceeee----------------ecccCcccEE
Confidence 0000000 000000 0012235799
Q ss_pred eecCCceEEEeeec-ceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeC
Q 001178 775 YTNSGIGILALWSN-GVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG 853 (1131)
Q Consensus 775 ~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d 853 (1131)
|||||+.|++++.| +.+.+|.+.... ..+...+..+.+...|.. ...
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~yp~~g~~---~~~ 223 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYG-----------------------------DEQYPRTINIPYPKAGAK---NPV 223 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECC-----------------------------SSSSCEEEEEECCBTTSC---CCE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccC-----------------------------CCCCccceeecCCCCCCC---CCe
Confidence 99999999998865 455555432210 012233455566555431 113
Q ss_pred CeEEEEECCCceeE---E-----EEeCCCCCeeEEEEeCCCCcEEEEEeCCC----cEEEEE----eecceeEEee----
Q 001178 854 GKVSLFNMMNFKVM---T-----TFMSPPPASTFLAFHPQDNNIIAIGMEDS----TIQIYN----VRVDEVKTKL---- 913 (1131)
Q Consensus 854 g~i~vwd~~~~~~~---~-----~~~~~~~~i~~l~~s~~~~~~la~g~~dg----~I~iwd----~~~~~~~~~~---- 913 (1131)
..|++||+.+++.. . .+..|...+..++||| |++++++....+ .|++|| ..++++...+
T Consensus 224 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~ 302 (719)
T 1z68_A 224 VRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIE 302 (719)
T ss_dssp EEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEE
T ss_pred eEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccc
Confidence 47999999988753 1 1235677899999999 688887754332 488899 7778776666
Q ss_pred cccccCee-----EEEEccCCCEEEE--EeCCC--cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe
Q 001178 914 KGHQKHIT-----GLAFSTNLNILVS--SGSDA--QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH 984 (1131)
Q Consensus 914 ~~h~~~V~-----~l~~s~dg~~l~s--~~~Dg--~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 984 (1131)
.+|.+.+. .++|+|||+.|+. ...+| .|.+|++.+++.. ....+ ...+..+.++ +++.++...
T Consensus 303 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-----~lt~~--~~~v~~~~~~-d~~~i~~~~ 374 (719)
T 1z68_A 303 ESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAI-----QITSG--KWEAINIFRV-TQDSLFYSS 374 (719)
T ss_dssp ECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCE-----ECSCS--SSCEEEEEEE-CSSEEEEEE
T ss_pred ccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceE-----ecccC--ceEEEEEEEE-eCCEEEEEE
Confidence 47777777 8999999996554 44555 5777777665421 11111 1346677777 777777643
Q ss_pred -C-----CeEEEEeCCC--ccc-ceeeec-CCCCCCCeEEEEEccCCCEEEEEe-cC--CcEEEEECCCCceeeEec
Q 001178 985 -E-----TQLAIYDGSK--MEC-IRQWVP-QDVLSSPISSAAYSCNSQLIYATF-TD--GSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 985 -d-----~~i~vwd~~~--~~~-~~~~~~-~~~~~~~v~~i~~s~dg~~l~s~~-~d--g~i~vwd~~~~~~~~~~~ 1048 (1131)
+ +..++|.+.. +.. ...+.. ...+...+..+.|||||++++... .+ ..+.+||+.+++....+.
T Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 375 NEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred ecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 3 6677887653 321 222221 111256788999999999777543 22 468999998887655444
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=222.91 Aligned_cols=277 Identities=12% Similarity=0.065 Sum_probs=190.2
Q ss_pred EEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCC---CEEEEEEcCCCCEEEEEe
Q 001178 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSI---SVSRVAWSPDGNFIGVAF 428 (1131)
Q Consensus 352 ~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~spdg~~las~~ 428 (1131)
+++|+|||+ +++++ .|++|++||+.+++... ++.+|.. .|.+++|||||++||+++
T Consensus 20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~-------------------~~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYT-------------------ILSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEE-------------------EECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEE-------------------EEccccccccceeeEEECCCCCeEEEEe
Confidence 679999995 56654 59999999999987653 2223322 488999999999999987
Q ss_pred C---------CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe-cCCc
Q 001178 429 T---------KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-EGHE 497 (1131)
Q Consensus 429 ~---------d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~h~ 497 (1131)
. ++.|++||+.+++.+.. ..+ ...+.+++|||||+ .|+.+. |+.|++|| .+++..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRG-NEL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCS-SCC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccc-eec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 78999999999865210 112 25689999999999 566664 78999999 555544322 2333
Q ss_pred cCe-----------------EEEeecccCCccEEEEEecCC----------------------------------eEEEE
Q 001178 498 APV-----------------YSVCPHQKENIHFIFSTAVDG----------------------------------KIKAW 526 (1131)
Q Consensus 498 ~~v-----------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~i~~w 526 (1131)
..| .+++|+ +||+.|++++.|. .|++|
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wS--PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWS--PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEEC--TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 322 367775 5678999887652 78899
Q ss_pred eCCCCcee--EE------ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEe----CCCCeeeEEE----ecccCCc
Q 001178 527 LYDNVGSR--VD------YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN----ESEGALKRTY----IGFRKKS 590 (1131)
Q Consensus 527 d~~~~~~~--~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~~ 590 (1131)
|+.++... .. +..+...+..++|+||++.+++.....+....|++|| ..+++....+ .++ ...
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~~ 308 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-TGW 308 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-SSC
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC-Cce
Confidence 99887642 12 2346678999999999877766543333346799999 8887765444 233 324
Q ss_pred eE-----EEEEeCCCCEEEE--EEcCC--cEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC-----CcE
Q 001178 591 AG-----VVQFDTTRNRILA--AGEDN--QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD-----QGI 656 (1131)
Q Consensus 591 v~-----~~~~s~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d-----g~i 656 (1131)
+. .+.|+|+|+.++. ...+| .|++||+.+++. ..+..+ ...+..+.++ +++.++..+.+ +..
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccC--ceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 44 6889999986554 33455 577778777663 333322 2246677777 77777776655 778
Q ss_pred EEEecCC
Q 001178 657 KILANAD 663 (1131)
Q Consensus 657 ~iw~~~~ 663 (1131)
++|.+..
T Consensus 385 ~l~~~~~ 391 (719)
T 1z68_A 385 NIYRISI 391 (719)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 8887643
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=5.6e-18 Score=194.37 Aligned_cols=220 Identities=12% Similarity=0.068 Sum_probs=158.6
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE-
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG- 425 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la- 425 (1131)
...++.+++++++. ++++|+.++ |+||+........... .+... ...........|...|.+++|+|||++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPNK-IVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTTC-EEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCccc-ccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34689999999998 588888787 8998864321100000 00000 00000111224677899999999999999
Q ss_pred ---EEeCCCeEEEEEecCC--------CccceeeeeecCcCCeeEEEEecC-CCceEEEEEcCCCcEEEEe-CCCceeEE
Q 001178 426 ---VAFTKHLIHLYTYQGS--------NDLCQSLEIDAHVGGVNDLAFSYP-NKQLCIVTCGDDKLIRVWD-LSGRKLFQ 492 (1131)
Q Consensus 426 ---s~~~d~~i~vwd~~~~--------~~~~~~~~~~~h~~~V~~l~~s~d-~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 492 (1131)
+|+.|++|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.|++|++|| .++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999765 222234456789999999999998 55 899999999999999 66766667
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC-------CceEEEEEEccCCCEEEEEeecC--
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-------GLWCTTMLYSADGSRLFSCGTSK-- 563 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~~~~~~~-- 563 (1131)
..+|...|.+++|++ ++++|++|+.||.|++||.+ +.....+..+ ...|.++.|++++.++++.+...
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 778999999999975 46899999999999999998 4444433332 23799999999998887665421
Q ss_pred -CCCceEEEEeCCCC
Q 001178 564 -EGDSHLVEWNESEG 577 (1131)
Q Consensus 564 -~~~~~i~iwd~~~~ 577 (1131)
.....+++|++...
T Consensus 265 ~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 265 LETSPDVVMALLPKK 279 (434)
T ss_dssp SSSCCEEEEEECCCT
T ss_pred cCCCCceEEEEeccC
Confidence 11234899998754
No 155
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=7.7e-18 Score=208.77 Aligned_cols=381 Identities=9% Similarity=0.017 Sum_probs=240.9
Q ss_pred EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCc--e--EEEEEeCCCCEEEEEEcC---------C
Q 001178 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS--A--GVVQFDTTRNRILAAGED---------N 610 (1131)
Q Consensus 544 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--v--~~~~~s~~~~~l~~~~~d---------g 610 (1131)
..++.|+|||+++++. ++.|++||..+++....+.++.... + ..+.|||||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999888874 6799999999999887777765322 2 337899999999998876 5
Q ss_pred cEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCc
Q 001178 611 QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGS 690 (1131)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1131)
.+++||+.+++... +. .+...+..++|||||+.||.+. ++.|++|+..++........++...
T Consensus 93 ~~~~~d~~~~~~~~-l~--~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------- 155 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EE--RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------- 155 (740)
T ss_dssp EEEEEETTTTEECC-SS--CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------
T ss_pred EEEEEECCCCcEEE-cc--cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------
Confidence 67799999988653 22 2233689999999999998884 6899999987762110000000000
Q ss_pred cceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccce
Q 001178 691 AVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKV 770 (1131)
Q Consensus 691 ~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i 770 (1131)
++.+ +.-|-..+ +.....
T Consensus 156 -----------------------------------------~~~g-----~~~~v~~e----------------e~~~~~ 173 (740)
T 4a5s_A 156 -----------------------------------------IYNG-----ITDWVYEE----------------EVFSAY 173 (740)
T ss_dssp -----------------------------------------EEES-----BCCHHHHH----------------HTSSSS
T ss_pred -----------------------------------------eecC-----cccccccc----------------hhcCCC
Confidence 0000 00000000 001223
Q ss_pred EEEEeecCCceEEEeeecc-eeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEE
Q 001178 771 ARLLYTNSGIGILALWSNG-VQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVM 849 (1131)
Q Consensus 771 ~~l~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 849 (1131)
..+.|||||+.|+....|. .+.+|++....... .+...+..+.+.+.|...
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~---------------------------~~~~~~~~~~yp~~G~~~- 225 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES---------------------------LQYPKTVRVPYPKAGAVN- 225 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT---------------------------CSSCEEEEEECCBTTSCC-
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCC---------------------------CCCCcceeecCCCCcCcC-
Confidence 4689999999999887654 47777754211100 133455667777776431
Q ss_pred EEeCCeEEEEECCC---ce--eEEEEe------CCCCCeeEEEEeCCCCcEEEEEeCC----CcEEEEEeecce----eE
Q 001178 850 SAGGGKVSLFNMMN---FK--VMTTFM------SPPPASTFLAFHPQDNNIIAIGMED----STIQIYNVRVDE----VK 910 (1131)
Q Consensus 850 ~~~dg~i~vwd~~~---~~--~~~~~~------~~~~~i~~l~~s~~~~~~la~g~~d----g~I~iwd~~~~~----~~ 910 (1131)
...+|++||+.+ ++ ....+. ++...+..++|+| |+++++..... ..|++||+.+++ +.
T Consensus 226 --~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 226 --PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp --CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred --CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 123699999998 73 233343 2667799999999 78876665432 369999999887 32
Q ss_pred E--ee--cccccCee-----EEEEccCCCEEE-EEeC-C--CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCC
Q 001178 911 T--KL--KGHQKHIT-----GLAFSTNLNILV-SSGS-D--AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1131)
Q Consensus 911 ~--~~--~~h~~~V~-----~l~~s~dg~~l~-s~~~-D--g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 977 (1131)
. .+ .+|.+.|. .++|+|||+.|+ ..+. + ..|++||+.+++.. .+..+. ..+..+. .+|+
T Consensus 303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~--~~v~~~~-~~d~ 374 (740)
T 4a5s_A 303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGT--WEVIGIE-ALTS 374 (740)
T ss_dssp GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSS--SCEEEEE-EECS
T ss_pred EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCC--EEEEEEE-EEeC
Confidence 2 22 45666554 789999999877 6654 3 46888898875532 222221 3344443 2446
Q ss_pred cEEEEEeCC--------eEEEEeCCCcccceeeecC-CCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECCCCceee
Q 001178 978 VRLLVNHET--------QLAIYDGSKMECIRQWVPQ-DVLSSPISSAAYSCNSQLIYATFTD---GSIGVFDADSLRLRC 1045 (1131)
Q Consensus 978 ~~l~~~~d~--------~i~vwd~~~~~~~~~~~~~-~~~~~~v~~i~~s~dg~~l~s~~~d---g~i~vwd~~~~~~~~ 1045 (1131)
+.++....+ .|+..++..+.....+... ......+..+.|||||++++..... ..+.+++..+++...
T Consensus 375 ~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~ 454 (740)
T 4a5s_A 375 DYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLR 454 (740)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEE
T ss_pred CEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEE
Confidence 666654322 5666666655433233211 1113578899999999987766533 468888988776655
Q ss_pred Eec
Q 001178 1046 RIA 1048 (1131)
Q Consensus 1046 ~~~ 1048 (1131)
.+.
T Consensus 455 ~l~ 457 (740)
T 4a5s_A 455 VLE 457 (740)
T ss_dssp EEE
T ss_pred Eec
Confidence 443
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=1.9e-16 Score=178.51 Aligned_cols=178 Identities=11% Similarity=0.098 Sum_probs=122.5
Q ss_pred CCCeeEEEecCCCCEEEEEe--CCeEEEEECCCce-------e------EEEEeCCCCCeeEEEEeCCCCcEEEEEe-CC
Q 001178 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFK-------V------MTTFMSPPPASTFLAFHPQDNNIIAIGM-ED 896 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~-------~------~~~~~~~~~~i~~l~~s~~~~~~la~g~-~d 896 (1131)
...+.+++|+|||+++++++ ++.|.+|++.... . ......+...+..++|+| +++++++++ .+
T Consensus 154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~ 232 (361)
T 3scy_A 154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIG 232 (361)
T ss_dssp SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTT
T ss_pred CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCC
Confidence 34577899999999777665 6889999877533 1 111223455688999999 788776666 68
Q ss_pred CcEEEEEeeccee--EEee---cccccCeeEEEEccCCCEEEEEeC--CCcEEEEEcC--CCceeeeeeeecCCCCCCCC
Q 001178 897 STIQIYNVRVDEV--KTKL---KGHQKHITGLAFSTNLNILVSSGS--DAQLIFWNTD--TWEKRKSIAIQLPAGKLPVG 967 (1131)
Q Consensus 897 g~I~iwd~~~~~~--~~~~---~~h~~~V~~l~~s~dg~~l~s~~~--Dg~v~lwd~~--~~~~~~~~~~~~~~~~~~~~ 967 (1131)
+.|.+|++.+++. +..+ ..+.....+++|+|||++|+++.. ++.|.+|+++ +++......... ...
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-----g~~ 307 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-----GIH 307 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-----SSC
T ss_pred CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-----CCC
Confidence 9999999997754 2222 334455789999999999876665 4899999996 333222222211 146
Q ss_pred ceEEEEcCCCcEEEEEe--CCeEEEEe--CCCcccceeeecCCCCCCCeEEEEEc
Q 001178 968 ETRVQFHSDQVRLLVNH--ETQLAIYD--GSKMECIRQWVPQDVLSSPISSAAYS 1018 (1131)
Q Consensus 968 v~~v~~s~d~~~l~~~~--d~~i~vwd--~~~~~~~~~~~~~~~~~~~v~~i~~s 1018 (1131)
+..++|+|||++|+++. ++.+.+|+ ..+++........ +...+.|++|.
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~--~~~~p~~v~~~ 360 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDI--KVDKPVCLKFV 360 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCE--ECSSEEEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceee--eCCCCeEEEEc
Confidence 77899999999888864 68899964 4566654432111 14578898886
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=4.2e-18 Score=205.57 Aligned_cols=235 Identities=14% Similarity=0.169 Sum_probs=175.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CCeEEEEEecCCCccceeeeeecCc-CCeeEEEEecCCCceEEEEEcC---CCcEEEE
Q 001178 409 SISVSRVAWSPDGNFIGVAFT-KHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGD---DKLIRVW 483 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~l~~s~d~~~~~l~s~s~---d~~i~iw 483 (1131)
..+|.+++|+|||++||+++. ||+++||++.+++.. .+..|. ..+.+++|+|| + ++++++. +...++|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 457999999999999999887 999999999776532 345555 68999999999 5 6776654 5556776
Q ss_pred e--C--CCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEE
Q 001178 484 D--L--SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 484 d--~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
. . .+... .+..+. .+...+|++++++..+++++.++. .+||+++++.......+. .+++|+|||++|+++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5 5 55554 443322 344567777776555655555554 499998876555443333 789999999999988
Q ss_pred eecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCC--cEEEEEcCCCeEEEEEeccCCCCCcce
Q 001178 560 GTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN--QIKFWDMDNVNMLTSTEAEGGLPSLPR 637 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~ 637 (1131)
+.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+.+++.. .+..+ ...+..
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~ 242 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSS 242 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhh
Confidence 763333378999999888765 5555443 688999999999999888888 8999999998877 44333 235666
Q ss_pred EE--------EcCCCCEEEEEECCCcEEEEec
Q 001178 638 LR--------FNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 638 v~--------~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
++ |+|||.++++++.++.+++|++
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 77 9999999999999999999997
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.80 E-value=3.8e-17 Score=183.06 Aligned_cols=245 Identities=10% Similarity=0.102 Sum_probs=169.7
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc-CCCcEEE
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFT---KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRV 482 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s-~d~~i~i 482 (1131)
.+...+..++|+|||+ |++++. ++.|.+|++.+++ ......+..+...+..++|+|||+ +|++++ .++.|.+
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v 112 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT-AHKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEV 112 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE-EEEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc-EEEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEE
Confidence 3446678899999999 555543 6899999998765 233334456778899999999999 566555 7899999
Q ss_pred EeC--CCc--eeEEecC---------CccCeEEEeecccCCccEEEEEecCCeEEEEeCCC-CceeE--EecC-CCceEE
Q 001178 483 WDL--SGR--KLFQFEG---------HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRV--DYDA-PGLWCT 545 (1131)
Q Consensus 483 wd~--~~~--~~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~--~~~~-~~~~v~ 545 (1131)
||. .+. .+..+.. +...+.+++|++ +++++++...++.|++|++.. +.... .+.. ....+.
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 993 232 2233321 122477888865 456677777789999999983 32221 1222 333678
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCC--Cee--eEEEecccC-----CceEEEEEeCCCCEEEE-EEcCCcEEEE
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESE--GAL--KRTYIGFRK-----KSAGVVQFDTTRNRILA-AGEDNQIKFW 615 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~--~~~--~~~~~~~~~-----~~v~~~~~s~~~~~l~~-~~~dg~i~iw 615 (1131)
.++|+|||+++++++. .++.|.+|++.. ++. +..+..... ..+..++|+|+|++|++ ...++.|.+|
T Consensus 191 ~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~ 267 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVF 267 (347)
T ss_dssp EEEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEE
T ss_pred eEEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEE
Confidence 8999999998877653 367899998763 553 223332221 24778999999998754 5568999999
Q ss_pred EcCC---CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC-CcEEEEecC
Q 001178 616 DMDN---VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD-QGIKILANA 662 (1131)
Q Consensus 616 d~~~---~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d-g~i~iw~~~ 662 (1131)
++.. .+.+..+..++. .+..++|+|+|++|++++.+ +.+.+|++.
T Consensus 268 ~~~~~g~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 268 AVTADGHLTLIQQISTEGD--FPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EECGGGCEEEEEEEECSSS--CCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCcEEEeEEEecCCC--CcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 9973 244444544332 57899999999998888764 899999653
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=2.2e-17 Score=188.36 Aligned_cols=292 Identities=11% Similarity=-0.005 Sum_probs=192.2
Q ss_pred cCCCcEEE-----EEEecCCCcEEEEEcCCC--eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 345 HQGSSVVS-----MDFHPFHHTLLVVGCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 345 ~h~~~V~~-----~~fspdg~~llasg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
.|...+.. .+|||||+++++++..+| .|.+||+.+++... +..++...+..++|
T Consensus 28 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~~~~~~ 88 (388)
T 3pe7_A 28 PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNTFGGFL 88 (388)
T ss_dssp CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCSSSCEE
T ss_pred CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCccceEE
Confidence 35555665 899999997555544467 48888998887653 24456556657789
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEE--EecCCCceEEEE----------------------
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLA--FSYPNKQLCIVT---------------------- 473 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~--~s~d~~~~~l~s---------------------- 473 (1131)
||||+.|+.++.++.|.+||+.+++... ....+...+.... +++|++ +++.
T Consensus 89 spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T 3pe7_A 89 SPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFHEFYF 163 (388)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchhhhhhc
Confidence 9999999999999999999999986432 2334455454444 489998 4543
Q ss_pred EcCCCcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecC------CeEEEEeCCCCceeEEecCCC--ceEE
Q 001178 474 CGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD------GKIKAWLYDNVGSRVDYDAPG--LWCT 545 (1131)
Q Consensus 474 ~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~--~~v~ 545 (1131)
.+.+..|.+||..+.....+..+...+..++|+|. +++.|+..+.+ ..|.++|.+..... .+..+. ..+.
T Consensus 164 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~ 241 (388)
T 3pe7_A 164 TKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCT 241 (388)
T ss_dssp GCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEE
T ss_pred cCCcceEEEEECCCCceEEeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccc
Confidence 23457899999444445566667778888888651 55777766543 37777887654433 333333 3578
Q ss_pred EEEEccCCCEEEEEeecCC-CCceEEEEeCCCCeeeEE--EecccC--CceEEEEEeCCCCEEEEE---------EcCCc
Q 001178 546 TMLYSADGSRLFSCGTSKE-GDSHLVEWNESEGALKRT--YIGFRK--KSAGVVQFDTTRNRILAA---------GEDNQ 611 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~-~~~~i~iwd~~~~~~~~~--~~~~~~--~~v~~~~~s~~~~~l~~~---------~~dg~ 611 (1131)
.+.|+|||+.|+..+.... ....|++||+.+++.... +.++.. .......|+|+|+.|+.. ..+..
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 321 (388)
T 3pe7_A 242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPF 321 (388)
T ss_dssp EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCE
T ss_pred cceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCE
Confidence 8999999998877664221 123599999998875332 222100 001123699999877754 45678
Q ss_pred EEEEEcCCCeEEEEEeccCCCC--------CcceEEEcCCCCEEEEEEC-CCcEEEEecC
Q 001178 612 IKFWDMDNVNMLTSTEAEGGLP--------SLPRLRFNKEGNLLVVTTA-DQGIKILANA 662 (1131)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~--------~i~~v~~sp~~~~l~~~~~-dg~i~iw~~~ 662 (1131)
|++||+.+++............ .+..++|+|||+.|+..+. +|...||.+.
T Consensus 322 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 322 LYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 9999999887644333222110 3678899999998887664 6777777654
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=1.5e-17 Score=186.65 Aligned_cols=245 Identities=13% Similarity=0.121 Sum_probs=183.6
Q ss_pred EEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCC-CCeeEEEEeCCCCcE-EEEEeCCCcEEEEEeecceeEEeec
Q 001178 838 CVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP-PASTFLAFHPQDNNI-IAIGMEDSTIQIYNVRVDEVKTKLK 914 (1131)
Q Consensus 838 ~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~-la~g~~dg~I~iwd~~~~~~~~~~~ 914 (1131)
.++++++++++++++ +++|.+||+.+++.+..+..+. ..+..++|+| ++++ ++++..++.|.+||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788888888887 8999999999999988887543 2578999999 6664 5566678999999999998877765
Q ss_pred ccc------cCeeEEEEccCCCEEEEEeCC------------CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCC
Q 001178 915 GHQ------KHITGLAFSTNLNILVSSGSD------------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD 976 (1131)
Q Consensus 915 ~h~------~~V~~l~~s~dg~~l~s~~~D------------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 976 (1131)
.+. ..+.+++|+|||++|++++.+ +.|.+||+.+++........ . ....+.+++|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~--~~~~~~~~~~s~d 158 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--P--MPRQVYLMRAADD 158 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--E--CCSSCCCEEECTT
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--c--CCCcccceeECCC
Confidence 332 337899999999999998865 89999999885532221111 1 1135788999999
Q ss_pred CcEEEEEeCCeEEEEeCCCcccceeeecCCC-------------------------------------------------
Q 001178 977 QVRLLVNHETQLAIYDGSKMECIRQWVPQDV------------------------------------------------- 1007 (1131)
Q Consensus 977 ~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~------------------------------------------------- 1007 (1131)
|+ ++++ ++.|++||+.+++.+..+.....
T Consensus 159 g~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 159 GS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp SC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred Cc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 99 5554 44599999998887665543210
Q ss_pred ----------------CCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEE
Q 001178 1008 ----------------LSSPISSAAYSC-NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVT 1070 (1131)
Q Consensus 1008 ----------------~~~~v~~i~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~ 1070 (1131)
+...+.+++|+| ||++|+++ ++.|.+||+.+++.+..+.... .+..++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-------------~~~~~~ 301 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH-------------TYYCVA 301 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-------------CCCEEE
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-------------CccceE
Confidence 012456788889 99999988 8899999999998877765321 123588
Q ss_pred EcCCCCCeEEEEecCCcEEEEecCCCccccccccC
Q 001178 1071 SHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVP 1105 (1131)
Q Consensus 1071 ~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w~~~~p 1105 (1131)
|+| ++.+|++++.++.|.+||+.+.+....+..|
T Consensus 302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 302 FDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ECC-CCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 999 5567777888999999999988766655555
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=5.1e-17 Score=183.12 Aligned_cols=248 Identities=14% Similarity=0.164 Sum_probs=166.3
Q ss_pred CCCeeEEEecCCCCEEEEEeC-----CeEEEEECCC--cee--EEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001178 833 EDVVPCVALSKNDSYVMSAGG-----GKVSLFNMMN--FKV--MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~d-----g~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd 903 (1131)
...+..++|+|||++|++++. +.|.+|++.. ++. +.....+......+++ . ++.++++...++.|.+|+
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-d-g~~l~~~~~~~~~v~~~~ 126 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-N-GKNIVTANYSGGSITVFP 126 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-C-SSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-C-CCEEEEEECCCCEEEEEE
Confidence 455677999999999998884 6899998865 443 3344445566777777 2 444444444788999999
Q ss_pred eecceeEEee------c--------ccccCeeEEEEccCCCEEEEEe-CCCcEEEEEcCCCce------eee----eeee
Q 001178 904 VRVDEVKTKL------K--------GHQKHITGLAFSTNLNILVSSG-SDAQLIFWNTDTWEK------RKS----IAIQ 958 (1131)
Q Consensus 904 ~~~~~~~~~~------~--------~h~~~V~~l~~s~dg~~l~s~~-~Dg~v~lwd~~~~~~------~~~----~~~~ 958 (1131)
+.....+..+ . .+...+.+++|+|||++|++++ .++.|.+|++..... ... ....
T Consensus 127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (361)
T 3scy_A 127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK 206 (361)
T ss_dssp BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE
T ss_pred eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee
Confidence 9754322211 1 1223458899999999766555 588999999886442 111 1112
Q ss_pred cCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCccc--ceeeecCCCCCCCeEEEEEccCCCEEEEEecC--Cc
Q 001178 959 LPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKMEC--IRQWVPQDVLSSPISSAAYSCNSQLIYATFTD--GS 1032 (1131)
Q Consensus 959 ~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~--~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d--g~ 1032 (1131)
... ......++|+|||++++++. ++.|.+|++.+++. +..+.....+......++|+|||++|+++..+ +.
T Consensus 207 ~~~---~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~ 283 (361)
T 3scy_A 207 VAP---GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG 283 (361)
T ss_dssp CCT---TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred cCC---CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence 221 25678999999999887754 78999999987654 33333332234567899999999999877755 89
Q ss_pred EEEEECC--CCce--eeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEe-cCCcEEEEecCCCccc
Q 001178 1033 IGVFDAD--SLRL--RCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGL-TDGSVKVIEPSETERK 1099 (1131)
Q Consensus 1033 i~vwd~~--~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~-~Dg~v~iW~~~~~~~~ 1099 (1131)
|.+|++. +++. +..+.. ...+..++|+| ++++|++++ .++.|.+|++....++
T Consensus 284 i~v~~~~~~~g~~~~~~~~~~-------------g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 284 VAIFKVDETNGTLTKVGYQLT-------------GIHPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEEC-------------SSCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred EEEEEEcCCCCcEEEeeEecC-------------CCCCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCc
Confidence 9999996 4542 222221 11234689999 567777776 6799999877654443
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=2.4e-17 Score=184.99 Aligned_cols=274 Identities=11% Similarity=0.045 Sum_probs=184.9
Q ss_pred EEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceecc-CCCCCEEEEEEcCCCCEEE-EEeC
Q 001178 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK-DSSISVSRVAWSPDGNFIG-VAFT 429 (1131)
Q Consensus 352 ~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~spdg~~la-s~~~ 429 (1131)
.++++++++ ++++++.+++|.+||+.+++.+.. +. +....+..++|+|||++++ ++..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 456788776 788999999999999999876542 11 2222577899999999665 4556
Q ss_pred CCeEEEEEecCCCccceeeeee-cC-----cCCeeEEEEecCCCceEEEEEcCC------------CcEEEEe-CCCce-
Q 001178 430 KHLIHLYTYQGSNDLCQSLEID-AH-----VGGVNDLAFSYPNKQLCIVTCGDD------------KLIRVWD-LSGRK- 489 (1131)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~-~h-----~~~V~~l~~s~d~~~~~l~s~s~d------------~~i~iwd-~~~~~- 489 (1131)
++.|.+||+.+++... .+. .+ ...+.+++|+|||+ ++++++.+ +.|.+|| .+++.
T Consensus 64 ~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 8999999999876543 222 22 23478999999999 56666654 8999999 55332
Q ss_pred --eEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC---------------------c---e
Q 001178 490 --LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG---------------------L---W 543 (1131)
Q Consensus 490 --~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------------------~---~ 543 (1131)
+..+. +...+.+++|++ +++ +++++ +.|.+||..+++....+.... . .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 23333 334577888855 556 55554 349999998877666554332 0 3
Q ss_pred EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC-CCCEEEEEEcCCcEEEEEcCCCeE
Q 001178 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNM 622 (1131)
Q Consensus 544 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1131)
...+++++++........ ....+..++..+++....-.......+..++|+| ++++++++ ++.|++||+.+++.
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~ 287 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL 287 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE
Confidence 345666665532211110 0122333566555432211111333677899999 99999888 88999999999998
Q ss_pred EEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 623 LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 623 ~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+..+.... .+.+++|+|++++|++++.++.|.+||..++
T Consensus 288 ~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 288 IKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 88776443 4689999999998988888999999999876
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=1.1e-16 Score=180.33 Aligned_cols=248 Identities=9% Similarity=0.052 Sum_probs=170.1
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEECC-CceeEEEEeC-CCCCeeEEEEeCCCCc--EEEEEe-------------CC
Q 001178 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMM-NFKVMTTFMS-PPPASTFLAFHPQDNN--IIAIGM-------------ED 896 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~-~~~~~~~~~~-~~~~i~~l~~s~~~~~--~la~g~-------------~d 896 (1131)
..+..++|+|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| +++ ++++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 45778999999999988884599999997 7776544321 113366789999 777 455553 68
Q ss_pred CcEEEEEee-cceeEEeec----ccccCeeEEEEccCCCEEEEEeC-CCcEEEEEcC-CCceeeeeeeecCCCCCCCCce
Q 001178 897 STIQIYNVR-VDEVKTKLK----GHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTD-TWEKRKSIAIQLPAGKLPVGET 969 (1131)
Q Consensus 897 g~I~iwd~~-~~~~~~~~~----~h~~~V~~l~~s~dg~~l~s~~~-Dg~v~lwd~~-~~~~~~~~~~~~~~~~~~~~v~ 969 (1131)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|++. +++........... +...+.
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--~g~~p~ 196 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD--PGDHPR 196 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS--TTCCEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC--CCCCCC
Confidence 999999997 465544433 25567999999999998887654 6799999998 66543222222111 125688
Q ss_pred EEEEcCCCcEEEEEe--CCeEEEEeCC--Ccccce---eeecCC----CCCC------CeEEEE-EccCCCEEEEEecCC
Q 001178 970 RVQFHSDQVRLLVNH--ETQLAIYDGS--KMECIR---QWVPQD----VLSS------PISSAA-YSCNSQLIYATFTDG 1031 (1131)
Q Consensus 970 ~v~~s~d~~~l~~~~--d~~i~vwd~~--~~~~~~---~~~~~~----~~~~------~v~~i~-~s~dg~~l~s~~~dg 1031 (1131)
.++|+|||++|+++. ++.+.+|+++ +++... .+.... .+.. .+..++ |+|||++|++++.+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 999999999988764 6789999765 455421 121111 1122 588999 999999998877433
Q ss_pred ------cEEEEECC-CCceeeE---ecCCccccCCCCCCCCccccEEEEEcCC--CCCeEEEEecC-CcEEEEecCCC
Q 001178 1032 ------SIGVFDAD-SLRLRCR---IAPSAYMSQASPNSSQTVFPLVVTSHPQ--EPNQLAVGLTD-GSVKVIEPSET 1096 (1131)
Q Consensus 1032 ------~i~vwd~~-~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~v~~~p~--~~~~l~s~~~D-g~v~iW~~~~~ 1096 (1131)
.|.+|++. ++++... +.... . .+..++|+|. ++++|++++.+ ++|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~----------~--~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPT----------S--GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSS----------C--CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCC----------C--CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 6664431 21111 0 1113678885 56788888864 89999999765
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=7.9e-17 Score=199.67 Aligned_cols=114 Identities=11% Similarity=0.017 Sum_probs=89.4
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeE-----EEeecccCCccEEEEEecC---------
Q 001178 456 GVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY-----SVCPHQKENIHFIFSTAVD--------- 520 (1131)
Q Consensus 456 ~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~-----~~~~~~~~~~~~l~s~s~d--------- 520 (1131)
...+++|+|||+ +++++ |++|++|| .++++...+.+|..... .+.| ++||++|+.++.+
T Consensus 18 ~~~~~~w~~dg~--~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 18 KLYSLRWISDHE--YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSI--SPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCEEECSSSE--EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEE--CTTSSEEEEEEEEEECSSSCEE
T ss_pred cccccEECCCCc--EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEE--CCCCCEEEEEECCeeeEEEccc
Confidence 466899999998 77776 89999999 78887777777765432 2445 5677899988876
Q ss_pred CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeE
Q 001178 521 GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1131)
Q Consensus 521 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 581 (1131)
+.+.+||+.+++.. .+..+...+...+|||||+.||.+. ++.|++|+..+++..+
T Consensus 92 ~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-----~~~i~~~~~~~~~~~~ 146 (740)
T 4a5s_A 92 ASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-----NNDIYVKIEPNLPSYR 146 (740)
T ss_dssp EEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-----TTEEEEESSTTSCCEE
T ss_pred eEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-----CCeEEEEECCCCceEE
Confidence 56679999987654 3455566799999999999999985 6789999998876543
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=9.1e-17 Score=183.21 Aligned_cols=253 Identities=10% Similarity=0.010 Sum_probs=171.5
Q ss_pred ccCCCCCEEE-----EEEcCCCCEEEEEeC-CC--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC
Q 001178 405 VKDSSISVSR-----VAWSPDGNFIGVAFT-KH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD 476 (1131)
Q Consensus 405 ~~~h~~~V~~-----~~~spdg~~las~~~-d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~ 476 (1131)
+..|...... .+|||||++||.++. ++ .|.+||+.+++... ...+|...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 4456655655 889999999999987 66 48888988876432 2345555666789999999 7888888
Q ss_pred CCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEE----------------------ecCCeEEEEeCCCCce
Q 001178 477 DKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST----------------------AVDGKIKAWLYDNVGS 533 (1131)
Q Consensus 477 d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------------------s~dg~i~~wd~~~~~~ 533 (1131)
++.|++|| .+++....+..+...+....+..++++..++.. ..+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 89999999 666666556556665555555446677777642 2447899999988754
Q ss_pred eEEecCCCceEEEEEEcc-CCCEEEEEeecCC--CCceEEEEeCCCCeeeEEEecccC-CceEEEEEeCCCCEEEEEEc-
Q 001178 534 RVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKE--GDSHLVEWNESEGALKRTYIGFRK-KSAGVVQFDTTRNRILAAGE- 608 (1131)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~- 608 (1131)
... ..+...+..+.|+| ||+.|+.+..... ....|+++|...+... .+..+.. ..+...+|+|||+.|+..+.
T Consensus 181 ~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 TVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecC
Confidence 443 34455689999999 9999988874221 1448899998765543 3333332 24677899999997765443
Q ss_pred CC----cEEEEEcCCCeEEEEEeccCCC---CCcceEEEcCCCCEEEEE---------ECCCcEEEEecCCC
Q 001178 609 DN----QIKFWDMDNVNMLTSTEAEGGL---PSLPRLRFNKEGNLLVVT---------TADQGIKILANADG 664 (1131)
Q Consensus 609 dg----~i~iwd~~~~~~~~~~~~~~~~---~~i~~v~~sp~~~~l~~~---------~~dg~i~iw~~~~~ 664 (1131)
++ .|++||+.+++........... .....+.|+|||+.|+.. ..+..|.+||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 22 3999999998754433222200 012345799999988754 44568999998765
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=5.1e-16 Score=174.83 Aligned_cols=249 Identities=8% Similarity=0.033 Sum_probs=170.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEec-CCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc-----------
Q 001178 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQ-GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG----------- 475 (1131)
Q Consensus 408 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~-~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s----------- 475 (1131)
+...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 33467889999999999999888 99999997 665332 1122211 236679999999853355553
Q ss_pred --CCCcEEEEe-C-CCceeEEec----CCccCeEEEeecccCCccEEEEEe-cCCeEEEEeCC-CCceeE--Eec--CCC
Q 001178 476 --DDKLIRVWD-L-SGRKLFQFE----GHEAPVYSVCPHQKENIHFIFSTA-VDGKIKAWLYD-NVGSRV--DYD--APG 541 (1131)
Q Consensus 476 --~d~~i~iwd-~-~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~~wd~~-~~~~~~--~~~--~~~ 541 (1131)
.++++.+|+ . +|+....+. .+...+.+++|+| +|++++++. .++.|++|+++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 689999999 3 466554443 2456788998864 567777665 46899999998 554322 232 235
Q ss_pred ceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC--CCeeeE---EEecccC-----C-------ceEEEE-EeCCCCEE
Q 001178 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES--EGALKR---TYIGFRK-----K-------SAGVVQ-FDTTRNRI 603 (1131)
Q Consensus 542 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~~-----~-------~v~~~~-~s~~~~~l 603 (1131)
..+..++|+|||+++++++. .++.|.+|+.. +++... .+..... . .+..++ |+|+|++|
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 56899999999999988763 25688888654 565432 2322111 1 367899 99999988
Q ss_pred EEEEcC-C-----cEEEEEcC-CCeEEEEEe-ccCCCCCcceEEEcC---CCCEEEEEECC-CcEEEEecCCC
Q 001178 604 LAAGED-N-----QIKFWDMD-NVNMLTSTE-AEGGLPSLPRLRFNK---EGNLLVVTTAD-QGIKILANADG 664 (1131)
Q Consensus 604 ~~~~~d-g-----~i~iwd~~-~~~~~~~~~-~~~~~~~i~~v~~sp---~~~~l~~~~~d-g~i~iw~~~~~ 664 (1131)
+++..+ + .|.+|++. +++...... ..........++|+| +|++|++++.+ +.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876543 2 89999996 566543211 111122467899999 89999998864 89999998654
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=1.7e-15 Score=169.44 Aligned_cols=312 Identities=9% Similarity=0.082 Sum_probs=207.4
Q ss_pred CccEEEEEe------cCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec------CCCCceEEEEeCCCC
Q 001178 510 NIHFIFSTA------VDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNESEG 577 (1131)
Q Consensus 510 ~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~~~~~~i~iwd~~~~ 577 (1131)
++++++... .|+.|.+||..+++....+.....+ .++|+|||++++++... ++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445555543 4789999999888777666655444 89999999999988631 112567999999999
Q ss_pred eeeEEEeccc-----CCceEEEEEeCCCCEEEEEEc--CCcEEEEEcCCCeEEEE-EeccCCCCCcceEEEcCCC-CEEE
Q 001178 578 ALKRTYIGFR-----KKSAGVVQFDTTRNRILAAGE--DNQIKFWDMDNVNMLTS-TEAEGGLPSLPRLRFNKEG-NLLV 648 (1131)
Q Consensus 578 ~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~i~~v~~sp~~-~~l~ 648 (1131)
+.+..+.... ......++++|+|++|+++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 8888776421 123556899999999999874 68999999999988877 54332 1235567765 6778
Q ss_pred EEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCC
Q 001178 649 VTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGI 728 (1131)
Q Consensus 649 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 728 (1131)
+.+.||.+.+|+.....+.... .+
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~--~~------------------------------------------------------ 191 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQ--SR------------------------------------------------------ 191 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEE--EE------------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeee--cc------------------------------------------------------
Confidence 8889999999987542111100 00
Q ss_pred CCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccc
Q 001178 729 EKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKAT 808 (1131)
Q Consensus 729 ~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 808 (1131)
...+|+... .. ..+.+++++..++..+.++.+.++|+.......
T Consensus 192 -----------~~~~~~~~~-------------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~----- 235 (361)
T 2oiz_A 192 -----------SKQMFSVKD-------------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV----- 235 (361)
T ss_dssp -----------CCCCSCTTT-------------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE-----
T ss_pred -----------ccceEcCCC-------------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee-----
Confidence 000011000 00 011224555556666666777777764321100
Q ss_pred eeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe------------CCeEEEEECCCceeEEEEeCCCCC
Q 001178 809 AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG------------GGKVSLFNMMNFKVMTTFMSPPPA 876 (1131)
Q Consensus 809 ~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~------------dg~i~vwd~~~~~~~~~~~~~~~~ 876 (1131)
...|............ .......++|+||++.+.++. .++|.+||+.+++.+.++..+.
T Consensus 236 ----~~~~~~~~~~~~~~~~---~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-- 306 (361)
T 2oiz_A 236 ----DGPWSLLNDEDKAKNW---VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-- 306 (361)
T ss_dssp ----EEEEESCCHHHHHTTC---EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--
T ss_pred ----cccccccCcccccccc---ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--
Confidence 0112211110000000 011122378999988877653 2479999999999999998876
Q ss_pred eeEEEEeCCCCcEEEEEeCCCcEEEEEeecc--eeEEeecccccCeeEEEEccCCC
Q 001178 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVD--EVKTKLKGHQKHITGLAFSTNLN 930 (1131)
Q Consensus 877 i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~s~dg~ 930 (1131)
+.+++|+| ++++|++++. ++|.+||..++ +.+..+..+......++++|||+
T Consensus 307 p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999 7888888877 99999999999 99988877777789999999986
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=1e-15 Score=171.24 Aligned_cols=220 Identities=12% Similarity=0.084 Sum_probs=156.2
Q ss_pred CCeeEEEecCCCCEEEEEe---CCeEEEEECCCceeEEE-EeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec-ce
Q 001178 834 DVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-DE 908 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~-~~ 908 (1131)
.....++++|||++|++++ +++|.+||+.+++.+.+ +... ....+.+.|+++..+++.+.||.+.+|+... ++
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~ 185 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK 185 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence 3456789999999998876 46899999999998887 5532 2333667785557888899999999999865 55
Q ss_pred eEE------eecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC------CCCCCCceEEEEcCC
Q 001178 909 VKT------KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA------GKLPVGETRVQFHSD 976 (1131)
Q Consensus 909 ~~~------~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d 976 (1131)
... .+..+..++ .+.+++++..++..+.++.|.++|+............... +........++|+||
T Consensus 186 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 186 VASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA 264 (361)
T ss_dssp EEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred EeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence 441 222223332 3445788888888888999999999765422111111100 000122234789999
Q ss_pred CcEEEEEe------------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC--c
Q 001178 977 QVRLLVNH------------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL--R 1042 (1131)
Q Consensus 977 ~~~l~~~~------------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~--~ 1042 (1131)
+..+++.. .+.|.+||+.+++.+..+..+ . +.+++|+|||++|++++. +.|.+||..++ +
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~---~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR---D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK 338 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT---T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC---C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce
Confidence 88887742 247999999999999988776 3 899999999999999886 99999999999 8
Q ss_pred eeeEecCCccccCCCCCCCCccccEEEEEcCC
Q 001178 1043 LRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQ 1074 (1131)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~ 1074 (1131)
.+..+.... ..+..+.++|+
T Consensus 339 ~~~~i~~~G------------~~P~~~~~~p~ 358 (361)
T 2oiz_A 339 LLRTIEGAA------------EASLQVQFHPV 358 (361)
T ss_dssp EEEEETTSC------------SSEEEEEECCC
T ss_pred eeEEeccCC------------CCcEEEEecCC
Confidence 887764222 23446888884
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=2.7e-16 Score=179.82 Aligned_cols=282 Identities=10% Similarity=-0.025 Sum_probs=182.2
Q ss_pred EEEEEEecCCCcEEEEEcCC--CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 350 VVSMDFHPFHHTLLVVGCGD--GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 350 V~~~~fspdg~~llasg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
+.+++|||||++++++...+ ..|.+||+.+++... +..++......++|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEEE
Confidence 77889999999755555443 378888998876542 112222223347899999999999
Q ss_pred eCCCeEEEEEecCCCccceeeeeecCcCCeeE-------------------EEEecCCCceEEEEE-----cCCCcEEEE
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVND-------------------LAFSYPNKQLCIVTC-----GDDKLIRVW 483 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~-------------------l~~s~d~~~~~l~s~-----s~d~~i~iw 483 (1131)
+.++.|.+||+.+++... ....+...... ++|+|+++. ++.+ ..+..|++|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence 999999999998876432 12223332222 356778774 3332 466789999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecC------CeEEEEeCCCCceeEEecCC-CceEEEEEEccCCCE
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD------GKIKAWLYDNVGSRVDYDAP-GLWCTTMLYSADGSR 555 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~ 555 (1131)
| .+++. ..+..+...+..+.|++. ++..|+..+.+ ..|.+|+++........... ...+..+.|+|||++
T Consensus 174 d~~~g~~-~~~~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 174 DIETGEL-EVIHQDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ETTTCCE-EEEEEESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCcE-EeeccCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 9 44544 444456777888888652 34555555433 36888888655433222211 336888999999998
Q ss_pred EEEEeecCC-CCceEEEEeCCCCeeeEEEecccCCceEEEEEeC-CCCEEEEEE----------------cCCcEEEEEc
Q 001178 556 LFSCGTSKE-GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT-TRNRILAAG----------------EDNQIKFWDM 617 (1131)
Q Consensus 556 l~~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----------------~dg~i~iwd~ 617 (1131)
|+.++.... ..+.|++||+.+++....... . ... ..|+| +++++++++ .++.|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVM-P--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeC-C--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 887764211 124599999988876543322 1 233 88999 999888754 3478999999
Q ss_pred CCCeEEEEEeccCCC--------CCcceEEEcCCCCEEEEEEC-CCcEEEEec
Q 001178 618 DNVNMLTSTEAEGGL--------PSLPRLRFNKEGNLLVVTTA-DQGIKILAN 661 (1131)
Q Consensus 618 ~~~~~~~~~~~~~~~--------~~i~~v~~sp~~~~l~~~~~-dg~i~iw~~ 661 (1131)
.+++........... ..+..++|+|+|+.|+.++. ++...+|.+
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 328 KAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 887754332221100 01467899999998887765 555555544
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=4.2e-16 Score=178.22 Aligned_cols=179 Identities=8% Similarity=0.051 Sum_probs=116.4
Q ss_pred CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC------CcEEEEEeecceeEEeeccc-ccCeeEEEE
Q 001178 853 GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED------STIQIYNVRVDEVKTKLKGH-QKHITGLAF 925 (1131)
Q Consensus 853 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d------g~I~iwd~~~~~~~~~~~~h-~~~V~~l~~ 925 (1131)
+..|.+||+.+++..... .+...+..+.|+|+++..|+..+.+ ..|.+|++.+++........ ...+..++|
T Consensus 167 ~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 245 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFW 245 (396)
T ss_dssp CEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEE
T ss_pred cceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEE
Confidence 356888888877665544 3456789999999445656555543 35888887765543333321 235888999
Q ss_pred ccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcC-CCcEEEEEe---------------
Q 001178 926 STNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS-DQVRLLVNH--------------- 984 (1131)
Q Consensus 926 s~dg~~l~s~~~D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~--------------- 984 (1131)
+|||++|+.++.+ +.|++||+.+++...... .. ... +.|+| ||++++++.
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~~-----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---MP-----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---CC-----SEE-EEEECSSSSEEEEEECCC----------CC
T ss_pred CCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee---CC-----CCC-CCccCCCCceEEEecCCcceeecccccccc
Confidence 9999988877654 459999998876432211 11 122 89999 999888642
Q ss_pred --CCeEEEEeCCCcccceeeecCCCC--------CCCeEEEEEccCCCEEEEEec-CCcEEEE--ECCCCc
Q 001178 985 --ETQLAIYDGSKMECIRQWVPQDVL--------SSPISSAAYSCNSQLIYATFT-DGSIGVF--DADSLR 1042 (1131)
Q Consensus 985 --d~~i~vwd~~~~~~~~~~~~~~~~--------~~~v~~i~~s~dg~~l~s~~~-dg~i~vw--d~~~~~ 1042 (1131)
+..|++||+.+++.. .+..+... ...+..++|+|||++|+.++. ++...+| ++.++.
T Consensus 317 ~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 317 ENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp CCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred CCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 368999999887753 33333100 002567799999998888774 4554454 555544
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=2.2e-13 Score=159.78 Aligned_cols=330 Identities=13% Similarity=0.073 Sum_probs=227.4
Q ss_pred CCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC--CCeeeEEEecc
Q 001178 509 ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES--EGALKRTYIGF 586 (1131)
Q Consensus 509 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~--~~~~~~~~~~~ 586 (1131)
+.+.++++...++.|.++|..+.+....+... ..+..+.|+|||+++++++. ++.|.+||+. +++.+..+...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~----dg~V~viD~~~~t~~~v~~i~~G 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGR----DGKVNMIDLWMKEPTTVAEIKIG 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCCEEEEEECC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcC----CCeEEEEECCCCCCcEeEEEecC
Confidence 34456777788999999999998877766543 34678999999999998874 7899999995 78888777642
Q ss_pred cCCceEEEEEe----CCCCEEEEEEc-CCcEEEEEcCCCeEEEEEeccCC---------CCCcceEEEcCCCCEEEEE-E
Q 001178 587 RKKSAGVVQFD----TTRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEGG---------LPSLPRLRFNKEGNLLVVT-T 651 (1131)
Q Consensus 587 ~~~~v~~~~~s----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~---------~~~i~~v~~sp~~~~l~~~-~ 651 (1131)
. ....++|+ |+|+++++++. ++.+.++|..+.+.+..+...+. ...+..+..++++..+++. .
T Consensus 240 ~--~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 240 S--EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp S--EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred C--CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 2 45679999 69998888664 69999999999999888764321 1134556666655444333 3
Q ss_pred CCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCc
Q 001178 652 ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKP 731 (1131)
Q Consensus 652 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 731 (1131)
.+|.|.++|..+..
T Consensus 318 ~~g~v~~vd~~~~~------------------------------------------------------------------ 331 (567)
T 1qks_A 318 ETGKILLVDYTDLN------------------------------------------------------------------ 331 (567)
T ss_dssp TTTEEEEEETTCSS------------------------------------------------------------------
T ss_pred CCCeEEEEecCCCc------------------------------------------------------------------
Confidence 34566666543220
Q ss_pred eeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceee
Q 001178 732 RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAV 811 (1131)
Q Consensus 732 ~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 811 (1131)
.+.+..+
T Consensus 332 ----------------------------------------------------------~~~v~~i--------------- 338 (567)
T 1qks_A 332 ----------------------------------------------------------NLKTTEI--------------- 338 (567)
T ss_dssp ----------------------------------------------------------EEEEEEE---------------
T ss_pred ----------------------------------------------------------cceeeee---------------
Confidence 0000000
Q ss_pred eceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeC-----CCCCeeEEEEeC
Q 001178 812 APQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS-----PPPASTFLAFHP 884 (1131)
Q Consensus 812 ~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~ 884 (1131)
........+.|+|||++++++. +++|.++|+.+++.+..+.. |.+.-.. -++|
T Consensus 339 -------------------~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p 398 (567)
T 1qks_A 339 -------------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHP 398 (567)
T ss_dssp -------------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEET
T ss_pred -------------------eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECC
Confidence 0123355788999999988876 68999999999998877764 2221112 2578
Q ss_pred CCCcEEEEEe-CCCcEEEEEeec-------ceeEEeecccccCeeEEEEccCCCEEEEEeC-------CCcEEEEEcCCC
Q 001178 885 QDNNIIAIGM-EDSTIQIYNVRV-------DEVKTKLKGHQKHITGLAFSTNLNILVSSGS-------DAQLIFWNTDTW 949 (1131)
Q Consensus 885 ~~~~~la~g~-~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~-------Dg~v~lwd~~~~ 949 (1131)
+++.+.+++. .+++|.++|..+ .+.+..+......-..+.++|++++|.+... ..+|.++|+.+.
T Consensus 399 ~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 399 TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 4466666554 468999999987 6677777765444455789999999888663 358999999876
Q ss_pred ce---eee-eeeecC----CCCCCCCceEEEEcCCCcEEEEE------eCCeEEEEeCCCcccceeeec
Q 001178 950 EK---RKS-IAIQLP----AGKLPVGETRVQFHSDQVRLLVN------HETQLAIYDGSKMECIRQWVP 1004 (1131)
Q Consensus 950 ~~---~~~-~~~~~~----~~~~~~~v~~v~~s~d~~~l~~~------~d~~i~vwd~~~~~~~~~~~~ 1004 (1131)
+. ... ..+... .......+..+.|+|+|+.+.++ .++.|.|+|..+++.+..+..
T Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred cccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 11 111 111110 01112568899999999988875 268999999999998887764
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=2.3e-14 Score=158.47 Aligned_cols=247 Identities=15% Similarity=0.114 Sum_probs=183.0
Q ss_pred CCcEEEEEEecCCCcEEEEEcCC------------------------CeEEEEECCCCcccccccceeecccccccceec
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGD------------------------GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQA 402 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1131)
-..|.+++|+|+|+ ++++...+ +.|.+||..+++.+..
T Consensus 23 l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~----------------- 84 (329)
T 3fvz_A 23 PGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS----------------- 84 (329)
T ss_dssp CSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-----------------
T ss_pred cCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-----------------
Confidence 35799999999997 67777766 4789999888776431
Q ss_pred eeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCC-ccceeeee---------ecCcCCeeEEEEec-CCCceEE
Q 001178 403 AIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN-DLCQSLEI---------DAHVGGVNDLAFSY-PNKQLCI 471 (1131)
Q Consensus 403 ~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~~---------~~h~~~V~~l~~s~-d~~~~~l 471 (1131)
.-.++-.....++++|+|+++++...++.|++||..+.. .+. .+ .++......++|+| ++. ++
T Consensus 85 -~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--ly 158 (329)
T 3fvz_A 85 -SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VF 158 (329)
T ss_dssp -ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EE
T ss_pred -cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EE
Confidence 122455678999999999999888889999999986542 222 22 24455789999999 677 77
Q ss_pred EEEc-CCCcEEEEeCCCceeEEecCC----------ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec--
Q 001178 472 VTCG-DDKLIRVWDLSGRKLFQFEGH----------EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-- 538 (1131)
Q Consensus 472 ~s~s-~d~~i~iwd~~~~~~~~~~~h----------~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-- 538 (1131)
++.+ .++.|++||.+|+.+..+... -.....+++.+. .+.++++...+++|++|+.++++....+.
T Consensus 159 v~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 159 VSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 7776 689999999888888777432 234788988643 25778888889999999998777666653
Q ss_pred CCCceEEEEEEccCCCEEEEEee---cCCCCceEEEEeCCCCeeeEEEec--ccCCceEEEEEeCCCCEEEEEEcCCcEE
Q 001178 539 APGLWCTTMLYSADGSRLFSCGT---SKEGDSHLVEWNESEGALKRTYIG--FRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1131)
Q Consensus 539 ~~~~~v~~~~~s~~g~~l~~~~~---~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 613 (1131)
.....+..++++| +..++..+. .......|++|+..+++.+..+.. ........++++|+|..+++...++.|+
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 3455788999999 443333321 012255899999999999888741 1223578899999997777788899999
Q ss_pred EEEcCC
Q 001178 614 FWDMDN 619 (1131)
Q Consensus 614 iwd~~~ 619 (1131)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=9.8e-15 Score=179.27 Aligned_cols=206 Identities=9% Similarity=-0.010 Sum_probs=144.8
Q ss_pred eeecCcCCeeEEEEecCCCceEEEEE--cCCCcEEEEe-CCCceeEEecCCccCeE---------EEeecccCCccE-EE
Q 001178 449 EIDAHVGGVNDLAFSYPNKQLCIVTC--GDDKLIRVWD-LSGRKLFQFEGHEAPVY---------SVCPHQKENIHF-IF 515 (1131)
Q Consensus 449 ~~~~h~~~V~~l~~s~d~~~~~l~s~--s~d~~i~iwd-~~~~~~~~~~~h~~~v~---------~~~~~~~~~~~~-l~ 515 (1131)
.+.+|...+..++|++++- ++++. +.++...||. ..+.....+..|...+. ...|..++|++. |+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 3567889999999997754 67777 6788999999 66677777877776666 555653466777 66
Q ss_pred EEec-CCeEEEEeCC--CCceeEEecC-----CCceEEEEEEccCCCEEEEEeecC------CCCceEEEEeCCC-----
Q 001178 516 STAV-DGKIKAWLYD--NVGSRVDYDA-----PGLWCTTMLYSADGSRLFSCGTSK------EGDSHLVEWNESE----- 576 (1131)
Q Consensus 516 s~s~-dg~i~~wd~~--~~~~~~~~~~-----~~~~v~~~~~s~~g~~l~~~~~~~------~~~~~i~iwd~~~----- 576 (1131)
.++. +..|.+|++. .......+.. +...+..++|+|||+.|++++.+. .+...|++||+.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 5543 5667777665 2033444444 456789999999999999887521 1226899999987
Q ss_pred -CeeeEEEe-cccCCceEEEEEeCCCCEEEEEEcC--------CcEEEEEcC-CC---eEEEEEeccCCCCCcceEEEcC
Q 001178 577 -GALKRTYI-GFRKKSAGVVQFDTTRNRILAAGED--------NQIKFWDMD-NV---NMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 577 -~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
++.. .+. .+. ..+..++|+|||++|+.++.+ ..|++||+. ++ +.......+. ..+..++|+|
T Consensus 176 ~~~~~-~l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~--~~~~~~~~sp 251 (662)
T 3azo_A 176 RSAVR-ELSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE--EAIAQAEWAP 251 (662)
T ss_dssp GGGSE-ESSCSCS-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT--BCEEEEEECT
T ss_pred CCcee-EEEecCC-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC--ceEcceEECC
Confidence 5543 333 333 366778999999999987755 379999999 56 4333333222 2688999999
Q ss_pred CCCEEEEEECCCcEEEEe
Q 001178 643 EGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~ 660 (1131)
||++++++..++...||.
T Consensus 252 dg~l~~~~~~~~~~~l~~ 269 (662)
T 3azo_A 252 DGSLIVATDRTGWWNLHR 269 (662)
T ss_dssp TSCEEEEECTTSSCEEEE
T ss_pred CCeEEEEECCCCCeEEEE
Confidence 999888887788444443
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=3.1e-13 Score=158.43 Aligned_cols=322 Identities=10% Similarity=0.122 Sum_probs=216.5
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcC--CCeEEEEEeccCCCCCcceEEEc--
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD--NVNMLTSTEAEGGLPSLPRLRFN-- 641 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~i~~v~~s-- 641 (1131)
++.|.++|..+++.+..+.... .+..+.|+||++++++++.|+.|.+||+. +++.+..+.... ....++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~--~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s~~ 250 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETSKM 250 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEECCS
T ss_pred CCeEEEEECCCCeEEEEEeCCC--CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEccc
Confidence 7899999999999998887432 56689999999999999999999999996 778877776533 35789999
Q ss_pred --CCCCEEEEEEC-CCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccc
Q 001178 642 --KEGNLLVVTTA-DQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1131)
Q Consensus 642 --p~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l 718 (1131)
|||++++++.. ++.+.++|..+.. .+..+.
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~---------------------------------------------- 283 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQS---------------------------------------------- 283 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEE----------------------------------------------
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEe----------------------------------------------
Confidence 69999887765 5899999865541 111000
Q ss_pred cCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecC
Q 001178 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNR 798 (1131)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 798 (1131)
+.+...
T Consensus 284 -----------------------------------------------------------------~~~~~~--------- 289 (567)
T 1qks_A 284 -----------------------------------------------------------------TRGMTY--------- 289 (567)
T ss_dssp -----------------------------------------------------------------CCEECT---------
T ss_pred -----------------------------------------------------------------cccccc---------
Confidence 000000
Q ss_pred CCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEE--EEeCCC
Q 001178 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMT--TFMSPP 874 (1131)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~--~~~~~~ 874 (1131)
+ +. .+ .....+..+.+++++..+++.. .|+|.++|..+.+.+. .+. ..
T Consensus 290 ------------------~---~~----~~--~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~ 341 (567)
T 1qks_A 290 ------------------D---EQ----EY--HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AE 341 (567)
T ss_dssp ------------------T---TC----CE--ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CC
T ss_pred ------------------c---cc----cc--cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-cc
Confidence 0 00 00 0122455667777766555544 5888888887654322 222 23
Q ss_pred CCeeEEEEeCCCCcEEEEEe-CCCcEEEEEeecceeEEeecc-----cccCeeEEEEccCCCE-EEEEe-CCCcEEEEEc
Q 001178 875 PASTFLAFHPQDNNIIAIGM-EDSTIQIYNVRVDEVKTKLKG-----HQKHITGLAFSTNLNI-LVSSG-SDAQLIFWNT 946 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~-~dg~I~iwd~~~~~~~~~~~~-----h~~~V~~l~~s~dg~~-l~s~~-~Dg~v~lwd~ 946 (1131)
.....+.|+| ++++++++. .++.|.++|+.+++.+..+.. |.+.-..+ ++|++.. +++.. .+++|.++|.
T Consensus 342 ~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 342 RFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp SSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred ccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecC
Confidence 4577889999 677665554 678999999999988766543 43322222 5787544 44443 4689999999
Q ss_pred CC-------CceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--------CCeEEEEeCCCc-----ccc-eeee--
Q 001178 947 DT-------WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--------ETQLAIYDGSKM-----ECI-RQWV-- 1003 (1131)
Q Consensus 947 ~~-------~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--------d~~i~vwd~~~~-----~~~-~~~~-- 1003 (1131)
.+ ++...... .. + ..-..+.++|++++|.+.. .+.|.++|+.+. ... ..+.
T Consensus 420 ~~~~~~~~~~kvv~~i~--~~-g---~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~ 493 (567)
T 1qks_A 420 DPEGHPDNAWKILDSFP--AL-G---GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIA 493 (567)
T ss_dssp CTTTCTTTBTSEEEEEE--CS-C---SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHH
T ss_pred CCCCCccccCEEEEEEe--cC-C---CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccc
Confidence 87 33322222 11 1 2335578999999999864 358999999877 211 2221
Q ss_pred ---cCCCCCCCeEEEEEccCCCEEEEEe-----cCCcEEEEECCCCceeeEecC
Q 001178 1004 ---PQDVLSSPISSAAYSCNSQLIYATF-----TDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 1004 ---~~~~~~~~v~~i~~s~dg~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
........+..+.|++||+++.++. .++.|.|+|..+++++..+..
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 494 EWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp HHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred cccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 1111145789999999999877764 379999999999999988874
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.65 E-value=4e-14 Score=156.55 Aligned_cols=251 Identities=11% Similarity=0.054 Sum_probs=182.3
Q ss_pred CCCeeEEEecCCCCEEEEEe-C------------------------CeEEEEECCCceeEEEEe-CCCCCeeEEEEeCCC
Q 001178 833 EDVVPCVALSKNDSYVMSAG-G------------------------GKVSLFNMMNFKVMTTFM-SPPPASTFLAFHPQD 886 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~ 886 (1131)
-..+.+++++++|+++++.. + ++|.+||..+++.+..+. .+...+..++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 46689999999999998877 4 379999999998887665 3445789999999 8
Q ss_pred CcEEEEEeCCCcEEEEEeecce-eEEee---------cccccCeeEEEEcc-CCCEEEEEe-CCCcEEEEEcCCCceeee
Q 001178 887 NNIIAIGMEDSTIQIYNVRVDE-VKTKL---------KGHQKHITGLAFST-NLNILVSSG-SDAQLIFWNTDTWEKRKS 954 (1131)
Q Consensus 887 ~~~la~g~~dg~I~iwd~~~~~-~~~~~---------~~h~~~V~~l~~s~-dg~~l~s~~-~Dg~v~lwd~~~~~~~~~ 954 (1131)
++++++...++.|++|+..... .+..+ .++.....+|+++| ++.++++.+ .++.|++|+.+ ++....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEE
Confidence 8888888889999999976442 44444 34555789999999 788888886 69999999954 333222
Q ss_pred eeeecCC----CCCCCCceEEEEcCC-CcEEEEE-eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEE-
Q 001178 955 IAIQLPA----GKLPVGETRVQFHSD-QVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYAT- 1027 (1131)
Q Consensus 955 ~~~~~~~----~~~~~~v~~v~~s~d-~~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~- 1027 (1131)
....... ...-.....++++|+ +.++++. .++.|++|+..+++.+..+... .+...+.+++|+| +..+++.
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEET-TEEEEEEC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeecC-CEEEEeCC
Confidence 2111000 001134789999999 5554554 3788999999988888877543 2356789999999 4333333
Q ss_pred ------ecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1028 ------FTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1028 ------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
..+..|++|++.+++.+..+.... .....+..++++| ++.++++...+++|++|++....
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~---------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVR---------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSS---------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEECS
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCC---------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCccc
Confidence 344589999999999888775211 1223456789999 55899999999999999987543
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=2e-13 Score=147.82 Aligned_cols=245 Identities=14% Similarity=0.168 Sum_probs=177.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE-cCCCCEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW-SPDGNFI 424 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-spdg~~l 424 (1131)
+-..+.+++++|+|+ ++++...++.|.+||.. ++.+.. +... ....+|...+.++++ .++++++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~-----~~~~--------~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQ-----FGEC--------GKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEE-----ECCB--------SSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEE-----eccc--------CCCcccccCceEEEEEcCCCeEE
Confidence 446799999999997 78888889999999987 443321 0000 001245567899999 5778777
Q ss_pred EEEeC-CCeEEEEEecCCCccceeeeee-cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec--CCccCe
Q 001178 425 GVAFT-KHLIHLYTYQGSNDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE--GHEAPV 500 (1131)
Q Consensus 425 as~~~-d~~i~vwd~~~~~~~~~~~~~~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~h~~~v 500 (1131)
++... ++.|.+|| .+++.+. .+. .+...+.+++++++|+ ++++...++.|++||.+++.+..+. ++...+
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFP 166 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTSCEEEEEECTTTCSSE
T ss_pred EEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCCCCEEEEeCCCCccCCc
Confidence 76643 78999999 4554332 232 3445789999999998 7888888899999997788777664 345568
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC--ceEEEEEEccCCCEEEEEeecCCCCc-eEEEEeCCCC
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG--LWCTTMLYSADGSRLFSCGTSKEGDS-HLVEWNESEG 577 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~~~~~~~-~i~iwd~~~~ 577 (1131)
..+++.+ +++++++.+.++.|++||... .....+.... ..+..++++++|+.+++... ++ .|.+|+. ++
T Consensus 167 ~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~-~g 238 (286)
T 1q7f_A 167 NGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ-DG 238 (286)
T ss_dssp EEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT-TS
T ss_pred EEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC-CC
Confidence 8898854 567777778899999999753 4444444332 46889999999988777653 54 8999995 56
Q ss_pred eeeEEEecccC-CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC
Q 001178 578 ALKRTYIGFRK-KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620 (1131)
Q Consensus 578 ~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1131)
+.+..+..+.. ..+..++++|+++.+++ +.++.|++|++...
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 67776665432 23678999999976665 67999999998653
No 177
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.64 E-value=5e-10 Score=139.81 Aligned_cols=587 Identities=11% Similarity=0.071 Sum_probs=338.9
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 426 (1131)
...|+++.-.++|. |-.|+.+| +..||-.+ |+.|....... ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~~~------~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGYA--------FTVYQHNEDDP------NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC--EEEEETTE-EEEECSSC--------EEEECCCTTCT------TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC--EEEeecCc-CcccCCCc--------eEEEeCCCCCC------CcccccceeEEEECCCCCEEE-
Confidence 45899999999995 45677666 56666322 22222110000 001245799999999998665
Q ss_pred EeCCCeEEEEEecCCCccceeeeeecCc----CCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecC-C-ccC-
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHV----GGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG-H-EAP- 499 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~----~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-h-~~~- 499 (1131)
|+.+| +..||..+++.. .+.... ..|.++...++|. +.+.. . +.+.+||........+.. + ...
T Consensus 104 gT~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi~t-~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLIST-P-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEEEE-T-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEEEE-C-CceEEEECCCCEEEeccCCCCCCcc
Confidence 44455 889998765421 121111 1288999988887 44443 3 568899943333332221 1 123
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe-cCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
|.++... .++ .+..++.++.+..|+..+....... ......|.++...++|...+... ++-|..||..+++
T Consensus 175 i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYR--QGD-QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEE--ETT-EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTTE
T ss_pred eEEEEEC--CCC-CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCCe
Confidence 7777653 333 4555676656888887665433211 12245688888888887666542 3348999988766
Q ss_pred eeEEEec------ccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc-----CCCCCcceEEEcCCCCEE
Q 001178 579 LKRTYIG------FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-----GGLPSLPRLRFNKEGNLL 647 (1131)
Q Consensus 579 ~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~i~~v~~sp~~~~l 647 (1131)
....... .....|.++...++|. +..|+.+ -|.+|+..++......... -....|.++...++|. +
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-l 323 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-M 323 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-E
T ss_pred EEEeecCCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-E
Confidence 5432221 1123688888887776 4445555 5899998877654432211 1123688888888887 4
Q ss_pred EEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccC
Q 001178 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1131)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 727 (1131)
.+|+.++-|..|+..+.. +..+ .+.
T Consensus 324 Wigt~~~Gl~~~~~~~~~--~~~~-------------------------~~~---------------------------- 348 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRNR--FKNI-------------------------RNI---------------------------- 348 (795)
T ss_dssp EEEESSSCEEEECGGGGS--SEEE-------------------------CCC----------------------------
T ss_pred EEEECCCCeEEeCCCccc--ceEE-------------------------cCC----------------------------
Confidence 557777778888754320 0000 000
Q ss_pred CCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCcc
Q 001178 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1131)
Q Consensus 728 ~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1131)
. . ...-....|.++...++|. |.+++.++-+..|+.......
T Consensus 349 --------------------~-----------~-~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~----- 390 (795)
T 4a2l_A 349 --------------------P-----------Y-KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFT----- 390 (795)
T ss_dssp --------------------T-----------T-SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEE-----
T ss_pred --------------------C-----------C-CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEE-----
Confidence 0 0 0000234577888887776 445566656666654321110
Q ss_pred ceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEe----CCCCCeeEEEE
Q 001178 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFM----SPPPASTFLAF 882 (1131)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~ 882 (1131)
.+....+... ..-....|.+++..++|+.|.+|. ++.|.+||..+++...... .+...|.++..
T Consensus 391 -------~~~~~~~~~~----~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~ 459 (795)
T 4a2l_A 391 -------SYTLQEDESA----RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILP 459 (795)
T ss_dssp -------EECCC----------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEE
T ss_pred -------EEecCCCCcc----cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEE
Confidence 0000000000 001246789999999998444555 6789999998876543322 23457899998
Q ss_pred eCCCCcEEEEEeCCCcEEEEEeecceeEEeecc------cccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001178 883 HPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG------HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956 (1131)
Q Consensus 883 s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~------h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~ 956 (1131)
.+ ++.+.+ |+. +-+.+|+..+++....... +...|.++...++|.+.+... +-|..|+..+++. ....
T Consensus 460 d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~~~~ 533 (795)
T 4a2l_A 460 DG-EGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-QKAS 533 (795)
T ss_dssp CS-SSCEEE-EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE-EECC
T ss_pred CC-CCCEEE-Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE-EEec
Confidence 88 666554 445 4588899877765432211 235799999999998776554 4588899877543 1000
Q ss_pred eecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCC-CCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001178 957 IQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDV-LSSPISSAAYSCNSQLIYATFTDGSIGV 1035 (1131)
Q Consensus 957 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~v~~i~~s~dg~~l~s~~~dg~i~v 1035 (1131)
...........+.++...++|.+.+++.. .+..||..+++... +....+ ....|.++...++|++.+++ ++.|..
T Consensus 534 ~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~ 609 (795)
T 4a2l_A 534 ILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST--NRGISC 609 (795)
T ss_dssp CSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEE
T ss_pred CCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc--CCceEE
Confidence 00111112256888999999987766554 89999987664332 221111 14579999999999877765 467888
Q ss_pred EECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1036 FDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1036 wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
|+..+++.. .+......+ ......-++...+ ++ .|..|+.+| +..+++..
T Consensus 610 ~~~~~~~~~-~~~~~dGl~------~~~f~~~~~~~~~-~G-~l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 610 FNPETEKFR-NFTESDGLQ------SNQFNTASYCRTS-VG-QMYFGGING-ITTFRPEL 659 (795)
T ss_dssp EETTTTEEE-EECGGGTCS------CSCEEEEEEEECT-TS-CEEEEETTE-EEEECGGG
T ss_pred EcCCCCcEE-EcCCcCCCc------cccCccCceeECC-CC-eEEEecCCc-eEEEcHHH
Confidence 998876543 332222111 1112112344444 44 566777788 66677653
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=1.6e-14 Score=177.48 Aligned_cols=286 Identities=10% Similarity=0.010 Sum_probs=186.3
Q ss_pred cCCCcEEEEEEecCCCcEEEEE--cCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEE---------
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVG--CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS--------- 413 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--------- 413 (1131)
.|...|..++|++++- +++++ +.++...||....+.... .+..|...+.
T Consensus 21 ~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~~~~ 80 (662)
T 3azo_A 21 SRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEYSGF 80 (662)
T ss_dssp HTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGTCCC
T ss_pred hcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCccccccccccCCc
Confidence 4888999999998864 45555 557889999964333221 1334444444
Q ss_pred EEEEc--CCCCE-EEEEeC-CCeEEEEEec--C-CCccceeeeeec-----CcCCeeEEEEecCCCceEEEEEcCC----
Q 001178 414 RVAWS--PDGNF-IGVAFT-KHLIHLYTYQ--G-SNDLCQSLEIDA-----HVGGVNDLAFSYPNKQLCIVTCGDD---- 477 (1131)
Q Consensus 414 ~~~~s--pdg~~-las~~~-d~~i~vwd~~--~-~~~~~~~~~~~~-----h~~~V~~l~~s~d~~~~~l~s~s~d---- 477 (1131)
..+|+ |||+. |+.++. +..|.+|++. + ++ .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~ 154 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGE 154 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSS
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCC
Confidence 55565 99998 877654 4556666665 2 33 22 2444 677899999999999 67777666
Q ss_pred ------CcEEEEeCCC------ceeEEec-CCccCeEEEeecccCCccEEEEEecC--------CeEEEEeCC-CC---c
Q 001178 478 ------KLIRVWDLSG------RKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVD--------GKIKAWLYD-NV---G 532 (1131)
Q Consensus 478 ------~~i~iwd~~~------~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d--------g~i~~wd~~-~~---~ 532 (1131)
..|++||..+ .....+. .+...+..++|+ +||+.|+.++.+ ..|++||++ ++ .
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999555 5556666 666677777775 577888877755 379999998 45 3
Q ss_pred eeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCC-------ceEEEEEeCCCCEEEE
Q 001178 533 SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK-------SAGVVQFDTTRNRILA 605 (1131)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~ 605 (1131)
.......+...+..+.|+|||++++++.. ++...|++||..+++.......+... .+..++|++++.++++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 33333344677899999999995555432 33348888988777654433322211 0456889999999999
Q ss_pred EEcCCcEEEE--EcCCCeEEEEEeccCCCCCcceE-EEcCCCCEEEEEECCCcEEEE--ecCCC
Q 001178 606 AGEDNQIKFW--DMDNVNMLTSTEAEGGLPSLPRL-RFNKEGNLLVVTTADQGIKIL--ANADG 664 (1131)
Q Consensus 606 ~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~i~~v-~~sp~~~~l~~~~~dg~i~iw--~~~~~ 664 (1131)
++. +.+++| |+.+++ +..+..+. ..+..+ +++++.-.+++++.+....+| ++.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGPW--TEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCCC--CeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 988 999999 655565 45554432 245555 444433334445555544444 54444
No 179
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.63 E-value=2.5e-13 Score=147.07 Aligned_cols=245 Identities=13% Similarity=0.107 Sum_probs=178.2
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeee---ecCcCCeeEEEEe-cCCCceEEEEEc-CCCcEE
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI---DAHVGGVNDLAFS-YPNKQLCIVTCG-DDKLIR 481 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~---~~h~~~V~~l~~s-~d~~~~~l~s~s-~d~~i~ 481 (1131)
++-..+.+++++++|+++++...++.|.+||.. ++.+...... .+|...+.++++. +++. ++++.. .++.|+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 555679999999999988888889999999987 3433211110 1345678999995 6665 555553 388999
Q ss_pred EEeCCCceeEEecC-CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec--CCCceEEEEEEccCCCEEEE
Q 001178 482 VWDLSGRKLFQFEG-HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD--APGLWCTTMLYSADGSRLFS 558 (1131)
Q Consensus 482 iwd~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~ 558 (1131)
+||.+++.+..+.. +...+..+++.+ +++++++...++.|.+||.+. .....+. .+...+..++++++|+.+++
T Consensus 104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 104 IYNQYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EECTTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EECCCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 99988888777643 445688888854 557777777889999999653 3333333 33346899999999987766
Q ss_pred EeecCCCCceEEEEeCCCCeeeEEEeccc-CCceEEEEEeCCCCEEEEEEcCC-cEEEEEcCCCeEEEEEeccCCCCCcc
Q 001178 559 CGTSKEGDSHLVEWNESEGALKRTYIGFR-KKSAGVVQFDTTRNRILAAGEDN-QIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1131)
Q Consensus 559 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~i~ 636 (1131)
... ++.|++||. +++.+..+.... ......++++++++.+++...++ .|.+|+. +++.+..+..+.....+.
T Consensus 181 ~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 254 (286)
T 1q7f_A 181 DNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCF 254 (286)
T ss_dssp EGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred ECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcce
Confidence 553 778999997 466666665431 13678899999998888877775 9999995 466666666554433467
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 637 RLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 637 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.++++|+|+++++ +.++.|++|++...
T Consensus 255 ~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 255 DVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 8999999986666 67999999997543
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=4.8e-14 Score=157.76 Aligned_cols=264 Identities=10% Similarity=0.104 Sum_probs=175.0
Q ss_pred CCCcEEEEEEecCCCcEEEEE--------cCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVG--------CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg--------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
.-..+...+| ||++++.+. ..++.|.+||+.+++... + ..+.+++|
T Consensus 13 ~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~ 66 (347)
T 2gop_A 13 KFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRI 66 (347)
T ss_dssp CSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEE
T ss_pred eeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEE
Confidence 3456788888 898755542 125689999998876432 2 46889999
Q ss_pred cCCCCEEEEEeCC---C--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC----------------
Q 001178 418 SPDGNFIGVAFTK---H--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD---------------- 476 (1131)
Q Consensus 418 spdg~~las~~~d---~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~---------------- 476 (1131)
||||++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 67 SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~ 139 (347)
T 2gop_A 67 SPDGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPA 139 (347)
T ss_dssp CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCC
T ss_pred CCCCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccce
Confidence 9999999988754 3 37778887765332 333334 999999999994 555442
Q ss_pred -----------CCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCC-------eEEEEeCCCCceeEEe
Q 001178 477 -----------DKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG-------KIKAWLYDNVGSRVDY 537 (1131)
Q Consensus 477 -----------d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-------~i~~wd~~~~~~~~~~ 537 (1131)
...|++|| .+++.+..+.. . .+..++|+ +++ +++++..++ ...+|.++++ ....+
T Consensus 140 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~l 213 (347)
T 2gop_A 140 WFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEEKM 213 (347)
T ss_dssp C---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEEEE
T ss_pred eecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeCCC-ceEEe
Confidence 25789999 45554355555 3 77888885 466 777775542 4455555433 33333
Q ss_pred cCCCceEEEEEEccCCCEEEEEeecCC----CCceEEEEeCCCCeeeEEEecccCCceEE-EEEeCCCCEEEEEEcCCcE
Q 001178 538 DAPGLWCTTMLYSADGSRLFSCGTSKE----GDSHLVEWNESEGALKRTYIGFRKKSAGV-VQFDTTRNRILAAGEDNQI 612 (1131)
Q Consensus 538 ~~~~~~v~~~~~s~~g~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i 612 (1131)
..+ ..+..+ +|||++|+.++.... ....|++|| +++....... ....+.. +.|+ ++ .+++++.++.+
T Consensus 214 ~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~~~~~~s-dg-~~~~~~~~~~~ 285 (347)
T 2gop_A 214 FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE-VDRGVGQAKIKD-GK-VYFTLFEEGSV 285 (347)
T ss_dssp EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT-CCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc-CCcccCCccEEc-Cc-EEEEEecCCcE
Confidence 333 444444 999999988764221 245799998 5554333333 3346775 8899 88 88889999999
Q ss_pred EEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcE-EEEecC
Q 001178 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI-KILANA 662 (1131)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i-~iw~~~ 662 (1131)
++| +.+++....... ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 286 ~l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 286 NLY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 999 876665443332 23688999999 677777777665 777765
No 181
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.62 E-value=4.6e-10 Score=140.12 Aligned_cols=535 Identities=9% Similarity=0.043 Sum_probs=317.4
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 426 (1131)
...|.++...++|. |-.|+.+ -+..||..+++... +... .. .....|.++...++|.+.+.
T Consensus 87 ~n~I~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~------~~~~---------~~-~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR--VWIGTRD-GLSRYDEEKDIFQN------FFYE---------KN-GKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEE------ECCE---------ET-TEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC--EEEEeCC-chheeCCCCCeEEe------cccc---------cc-CCCceEEEEEECCCCCEEEE
Confidence 35799999999997 3445554 48999987765332 1000 00 00011888998888887664
Q ss_pred EeCCCeEEEEEecCCCccceeeeeecC-cCC-eeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe-cCCccCeEE
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLEIDAH-VGG-VNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-EGHEAPVYS 502 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~-V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~h~~~v~~ 502 (1131)
. . +-|..||.++++... . ..++ ... |.++...+++. +. .++.++.+..|| .+++..... ......|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~--lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ--IY-IGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE--EE-EEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC--EE-EEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 3 458899987654211 0 0011 123 88898888886 33 355555688999 444433221 123456777
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC-------CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-------PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
+... .++ .+..++.++-+..||..+......... ....|.++...++|...+... . -|.+||..
T Consensus 220 i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQQ--SPT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEG 290 (795)
T ss_dssp EEEE--ETT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETT
T ss_pred EEEc--CCC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCC
Confidence 7653 333 455566555588898876543332211 234699999999988666542 3 58899988
Q ss_pred CCeeeEEEec------ccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc----CCCCCcceEEEcCCCC
Q 001178 576 EGALKRTYIG------FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE----GGLPSLPRLRFNKEGN 645 (1131)
Q Consensus 576 ~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~i~~v~~sp~~~ 645 (1131)
+++....... .....|.++...++|. |..|+.++-|..|+..++......... -....|.++...++|.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 7765433211 1224688888888776 666777778999987655432221111 0123578888888876
Q ss_pred EEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccc
Q 001178 646 LLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAA 725 (1131)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~ 725 (1131)
|.+|+.++-|..|+..++. +..+ ...
T Consensus 370 -lWiGt~~~Gl~~~~~~~~~--~~~~-------------------------~~~-------------------------- 395 (795)
T 4a2l_A 370 -LWIGTNDGGLNLYNPITQR--FTSY-------------------------TLQ-------------------------- 395 (795)
T ss_dssp -EEEEESSSCEEEECTTTCC--EEEE-------------------------CCC--------------------------
T ss_pred -EEEEECCCCeEEEcCCCCc--EEEE-------------------------ecC--------------------------
Confidence 4557777778888865441 0000 000
Q ss_pred cCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCC
Q 001178 726 RGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSG 805 (1131)
Q Consensus 726 ~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 805 (1131)
. + . +...-....|.+++..++|..|.+++.++-+..|+...+..
T Consensus 396 ----------~--~--------~------------~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~---- 439 (795)
T 4a2l_A 396 ----------E--D--------E------------SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV---- 439 (795)
T ss_dssp --------------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE----
T ss_pred ----------C--C--------C------------cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE----
Confidence 0 0 0 00000235678888888887455666655677776443211
Q ss_pred ccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeC------CCCCeeE
Q 001178 806 KATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMS------PPPASTF 879 (1131)
Q Consensus 806 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~------~~~~i~~ 879 (1131)
..+.... .......|.++...++|++.+... +.|.+||..+++....... ....|.+
T Consensus 440 --------~~~~~~~--------~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 502 (795)
T 4a2l_A 440 --------ENFNQRN--------SQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITT 502 (795)
T ss_dssp --------EEECTTT--------SCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEE
T ss_pred --------EEeecCC--------CCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEE
Confidence 0111000 001356789999999998766655 5688999887755432211 2356899
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec-------ccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 001178 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-------GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952 (1131)
Q Consensus 880 l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~-------~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~ 952 (1131)
+...+ ++.+.+ |+. +-|..|+..+++. .+. .+...|.++...++|.+.++.. . -|..||..+++..
T Consensus 503 i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 503 LFRDS-HKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK 575 (795)
T ss_dssp EEECT-TCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE
T ss_pred EEECC-CCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE
Confidence 99988 676555 444 5688999887765 222 2345799999999998766544 3 5888998775432
Q ss_pred eeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCC-CCCe--EEEEEccCCCEEEEEec
Q 001178 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL-SSPI--SSAAYSCNSQLIYATFT 1029 (1131)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~v--~~i~~s~dg~~l~s~~~ 1029 (1131)
. .....+-....+.++...++|.+.+++ ++.+..|+..+++. ..+....+. ...+ .++...++|++++ |+.
T Consensus 576 ~---~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~ 649 (795)
T 4a2l_A 576 R---YNTTNGLPNNVVYGILEDSFGRLWLST-NRGISCFNPETEKF-RNFTESDGLQSNQFNTASYCRTSVGQMYF-GGI 649 (795)
T ss_dssp E---ECGGGTCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEE-EEECGGGTCSCSCEEEEEEEECTTSCEEE-EET
T ss_pred E---eCCCCCCchhheEEEEECCCCCEEEEc-CCceEEEcCCCCcE-EEcCCcCCCccccCccCceeECCCCeEEE-ecC
Confidence 1 112222223568888899999876665 57788899876553 233322111 2233 5777788888666 444
Q ss_pred CCcEEEEECC
Q 001178 1030 DGSIGVFDAD 1039 (1131)
Q Consensus 1030 dg~i~vwd~~ 1039 (1131)
+| +..++.+
T Consensus 650 ~G-l~~~~p~ 658 (795)
T 4a2l_A 650 NG-ITTFRPE 658 (795)
T ss_dssp TE-EEEECGG
T ss_pred Cc-eEEEcHH
Confidence 55 5556654
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=5.6e-13 Score=164.37 Aligned_cols=248 Identities=9% Similarity=0.031 Sum_probs=172.2
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCc-
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFTKH-----LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL- 479 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~d~-----~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~- 479 (1131)
.+|...+..++|||||++||.+..++ .|++||+.+++.... .+. ...+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~--~~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc--CcccceEEEEeCCC--EEEEEEECCcc
Confidence 35656789999999999999876543 899999999875432 222 22367899999999 5676666655
Q ss_pred ---------------EEEEe-CCCc----eeEEecCCccCeEEEeecccCCccEEEEEec-----CCeEEEEeCCC----
Q 001178 480 ---------------IRVWD-LSGR----KLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-----DGKIKAWLYDN---- 530 (1131)
Q Consensus 480 ---------------i~iwd-~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~~wd~~~---- 530 (1131)
|++|+ .++. .+.....|...+..+.|+ ++|++|+.++. +..|++||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS--DDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC--TTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc--CCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999 4443 222333355567778775 56678877664 67899999976
Q ss_pred --Cc-eeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe--eeEEEecccC-CceEEEEEeCCCCEEE
Q 001178 531 --VG-SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRK-KSAGVVQFDTTRNRIL 604 (1131)
Q Consensus 531 --~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~-~~v~~~~~s~~~~~l~ 604 (1131)
+. ....+..+...+.. .|+++|+.|+..+........|++||+.++. ....+..+.. ..+..++|++++.+++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 32 34444444444444 5889999988877533336689999998774 2344444433 3677788887777778
Q ss_pred EEEcCCc--EEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEE----CCCcEEEEecCCC
Q 001178 605 AAGEDNQ--IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT----ADQGIKILANADG 664 (1131)
Q Consensus 605 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~----~dg~i~iw~~~~~ 664 (1131)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++... ..+.+.+||+.++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 8888874 666787678777777655 33678889999987666442 2468999998776
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=8.6e-13 Score=147.50 Aligned_cols=221 Identities=11% Similarity=0.111 Sum_probs=150.9
Q ss_pred CCeeEEEecCCCCEEEEEe-C---Ce--EEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC-----------
Q 001178 834 DVVPCVALSKNDSYVMSAG-G---GK--VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED----------- 896 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~-d---g~--i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d----------- 896 (1131)
..+..++|||||++|+..+ + +. |.+|++.+++.......+. +..++|+| +++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNE-DSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECT-TSSEEEEEEECCCC--------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECC-CCCEEEEEEccCCCcCCcEEEc
Confidence 3467899999999999876 2 33 8888998887766555433 99999999 78877777632
Q ss_pred ----------------CcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCC-------cEEEEEcCCCceee
Q 001178 897 ----------------STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA-------QLIFWNTDTWEKRK 953 (1131)
Q Consensus 897 ----------------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg-------~v~lwd~~~~~~~~ 953 (1131)
..|++||+.+++.+..+.. . .+..++|+||| +++++..++ ...+|.+++++..
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~- 211 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE- 211 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-
Confidence 5799999988887455554 3 78999999999 877776542 3455554443321
Q ss_pred eeeeecCCCCCCCCceEEEEcCCCcEEEEEe-C--------CeEEEEeCCCcccceeeecCCCCCCCeEE-EEEccCCCE
Q 001178 954 SIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-E--------TQLAIYDGSKMECIRQWVPQDVLSSPISS-AAYSCNSQL 1023 (1131)
Q Consensus 954 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d--------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~-i~~s~dg~~ 1023 (1131)
... . + ..+.. ++|||++|+... + ..|++|| +++.......+ ...+.. +.|+ || +
T Consensus 212 ~l~-~---~---~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~---~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 212 KMF-E---K---VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV---DRGVGQAKIKD-GK-V 275 (347)
T ss_dssp EEE-E---E---ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC---CSEEEEEEEET-TE-E
T ss_pred Eec-c---C---cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC---CcccCCccEEc-Cc-E
Confidence 111 1 1 12333 399999887643 2 3688888 55543333222 567886 9999 88 9
Q ss_pred EEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcE-EEEecC
Q 001178 1024 IYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSV-KVIEPS 1094 (1131)
Q Consensus 1024 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v-~iW~~~ 1094 (1131)
+++++.++.+++| +.+++....+.. ...+ ..+.|+| .++++++.+++. .+|.+.
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~~~-----------~~~v--~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIAKG-----------RHWI--MGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEECS-----------SSEE--EEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEecCCcEEEE-EcCCceEEEecC-----------CCeE--EeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 9999999999999 886654333221 1122 3577877 577888877765 788775
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.56 E-value=1.1e-12 Score=145.73 Aligned_cols=272 Identities=11% Similarity=0.045 Sum_probs=183.3
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
..|.+++|+|++.. ++..+.++.++.|. ++... .+..+...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~-------------------~~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTIT---AEPWL-------------------EISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEEE---CEEEE-------------------EEESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCcccc---cceeE-------------------EEeccCccccCcEECCCCCEEEEE
Confidence 45778889998874 56557788888882 22221 244566678999999999988888
Q ss_pred eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC----CcEEEEeCCCceeE-Eec--CCccCe
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD----KLIRVWDLSGRKLF-QFE--GHEAPV 500 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d----~~i~iwd~~~~~~~-~~~--~h~~~v 500 (1131)
..++.|.+||.++++... ....+...+.+++|+++|+ ++++...+ +.|.+||..+..+. .+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998876332 1224667899999999998 67776666 68999994444333 332 244568
Q ss_pred EEEeecccCCccEEEEEec------CCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC
Q 001178 501 YSVCPHQKENIHFIFSTAV------DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
..+++.+ ++.++++... .+.|..++.++..... +......+..++|+|+|+.++.+.. .++.|++|+.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8888864 5566666543 3556666655433322 2222234788999999997766542 2678999998
Q ss_pred CC-CeeeEEE------ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCC----CCCcceEEEcCC
Q 001178 575 SE-GALKRTY------IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG----LPSLPRLRFNKE 643 (1131)
Q Consensus 575 ~~-~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~i~~v~~sp~ 643 (1131)
.+ +.....+ .......+..++++++++.+++...++.|.+||. .++.+..+..... ...+.+++|+|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 63 4332211 1111125677999999998777777899999998 4666666654321 114789999999
Q ss_pred CCEEEEEECCC
Q 001178 644 GNLLVVTTADQ 654 (1131)
Q Consensus 644 ~~~l~~~~~dg 654 (1131)
++.|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 87777666653
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=2.7e-13 Score=149.47 Aligned_cols=251 Identities=13% Similarity=0.112 Sum_probs=179.7
Q ss_pred CCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe
Q 001178 834 DVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~ 912 (1131)
.....+++.. ++..++.. ++.|.+||..+++.+.++.. ......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 4466777743 34444444 79999999999999988853 46789999998 676655554899999999999988776
Q ss_pred ecccc-----cCeeEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-C
Q 001178 913 LKGHQ-----KHITGLAFSTNLNILVSSG-SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-E 985 (1131)
Q Consensus 913 ~~~h~-----~~V~~l~~s~dg~~l~s~~-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d 985 (1131)
+.... .....+++ .+++.+++.. .++.|.+||+.+++....... + .....++++|+|++++++. +
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~----g---~~p~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI----G---IQPTSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC----S---SCBCCCEECTTSEEEEEBCCB
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc----C---CCccceEEcCCCCEEEEECCC
Confidence 65433 14567777 4444444443 488999999999775443322 1 3456789999999777753 2
Q ss_pred ----------CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccC
Q 001178 986 ----------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQ 1055 (1131)
Q Consensus 986 ----------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1055 (1131)
+.|.++|..+++....+.... ......++|+||+++|+++.. .|.+||..+++..... ...
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~~- 263 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FLE- 263 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SBC-
T ss_pred ccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----eec-
Confidence 689999999998877665431 236899999999999998764 9999999988863211 011
Q ss_pred CCCCCCCccccEEEEEcCCCCCeEEEE----ecCCcEEEEecCCCccccccccCCCCCC
Q 001178 1056 ASPNSSQTVFPLVVTSHPQEPNQLAVG----LTDGSVKVIEPSETERKWGVAVPVDNGT 1110 (1131)
Q Consensus 1056 ~~~~~~~~v~~~~v~~~p~~~~~l~s~----~~Dg~v~iW~~~~~~~~w~~~~p~~~~~ 1110 (1131)
...-.+..++++|.++.++++. ..+++|.+|+.. ++..|.+.....++.
T Consensus 264 -----~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~ 316 (328)
T 3dsm_A 264 -----FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGA 316 (328)
T ss_dssp -----CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEE
T ss_pred -----CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcce
Confidence 0023455789999777888887 778999999998 776677665444443
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.56 E-value=1.9e-12 Score=140.77 Aligned_cols=242 Identities=7% Similarity=0.001 Sum_probs=172.9
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.+.....+++|+|+|+.+++++..++.|..||..++ . . .+..+...+.+++++|+|+++
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~-------------------~~~~~~~~~~~l~~~~dg~l~ 83 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-S-------------------PEMHPSHHQNGHCLNKQGHLI 83 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-E-------------------EEESSCSSEEEEEECTTCCEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-E-------------------EEECCCCCcceeeECCCCcEE
Confidence 356678999999999877889999999999999876 2 2 133466789999999999988
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeec-CcCCeeEEEEecCCCceEEEE----Ec-------------CCCcEEEEeCC
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVT----CG-------------DDKLIRVWDLS 486 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~-h~~~V~~l~~s~d~~~~~l~s----~s-------------~d~~i~iwd~~ 486 (1131)
++...++.|.+||..+++.........+ ....+.+++++|+|+ ++++ |+ ..+.|..+|..
T Consensus 84 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 84 ACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp EEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred EEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC
Confidence 8877778999999988763321111111 123567899999998 6776 32 13456666644
Q ss_pred CceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCC-CCce---eEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD-NVGS---RVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
++ +..+..+......++|++ +++.+++.+.++.|.+|+++ .+.. ...+......+..++++++|+..++.
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--- 235 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--- 235 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---
T ss_pred CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---
Confidence 44 444555667788898854 55677788888999999987 3322 12223334456789999999876665
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEE-eCCCCEEEEEEcCCcEEEEEcCCCeE
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQF-DTTRNRILAAGEDNQIKFWDMDNVNM 622 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1131)
++.|.+|+.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+..++..+++.
T Consensus 236 ---~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 ---GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ---TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ---CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 4679999986 777777776443 778889 5888889988875 455666666543
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=2.8e-11 Score=131.82 Aligned_cols=282 Identities=9% Similarity=-0.043 Sum_probs=193.7
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
+...+.+++++|+|+ ++++...++.|.+||.. ++.... ....+...+.+++++++|.+++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 456899999999997 56666667899999987 543210 1123456799999999999888
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEE-ecCCccCeEEEe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVC 504 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~ 504 (1131)
+...++.|..||.. ++ .. ...+......+.++++.++|+ ++++...++.|.+||.+++.... ...+...+..++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IK-EYTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EETTTTEEEEECTT-SC-EE-EEECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EE-EEeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECCCCCEEEecCCCCCCCCceEE
Confidence 87778899999976 33 22 112233456789999999998 77777778899999975554432 233445678888
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCceeEE-ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
+. +++.+.++...++.|..||. ++..... .......+..++++++|+..++... .+.|.+||. +++.....
T Consensus 148 ~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~ 219 (299)
T 2z2n_A 148 LG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEITEFK 219 (299)
T ss_dssp EC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEE
T ss_pred Ec--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcEEEEE
Confidence 75 45567776667789999998 4433322 3333456889999999987666532 678999998 66644321
Q ss_pred ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCC
Q 001178 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
.......+..+++++++..+++...++.|..||. +++. ..+....+...+.++++ +++.+.++.. .+.+..++..+
T Consensus 220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 2212336788999999886666557789999998 4543 33333333346889999 8887666554 56777777654
Q ss_pred C
Q 001178 664 G 664 (1131)
Q Consensus 664 ~ 664 (1131)
+
T Consensus 296 ~ 296 (299)
T 2z2n_A 296 D 296 (299)
T ss_dssp -
T ss_pred c
Confidence 3
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.54 E-value=1.8e-12 Score=138.17 Aligned_cols=252 Identities=10% Similarity=0.026 Sum_probs=186.8
Q ss_pred CCCCEEEEEe-CCeEEEEECCCceeEEEEeCCC-CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccc-cC
Q 001178 843 KNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ-KH 919 (1131)
Q Consensus 843 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~-~~ 919 (1131)
..+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| ++++++ +.++.|+.||. +++.+..+..+. ..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 3457777777 8999999999999999998766 5789999999 888888 45778999998 898888887653 47
Q ss_pred eeEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcc
Q 001178 920 ITGLAFSTNLNILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKME 997 (1131)
Q Consensus 920 V~~l~~s~dg~~l~s~~~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~ 997 (1131)
+.++.+.+||+++++.+. ++.|..+|. .++....................+++.++|.++++.. ++.|..||.. |+
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 889999999999999887 777877776 4444433332211101112445667899999998864 7899999998 99
Q ss_pred cceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCC
Q 001178 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPN 1077 (1131)
Q Consensus 998 ~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~ 1077 (1131)
.+..+... ..+.++.+.++|+++++++.++.|..+|..+|+.+.++....... .....+..+...+ +++
T Consensus 157 ~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~------~~l~~~~~~~~~~-~G~ 225 (276)
T 3no2_A 157 LLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG------VQLFFVAQLFPLQ-NGG 225 (276)
T ss_dssp EEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS------CCCSEEEEEEECT-TSC
T ss_pred EEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC------ccccccccceEcC-CCC
Confidence 88887654 345677889999999998888899999999999998886322110 0123344566666 667
Q ss_pred eEEEEec--C------CcEEEEec-CCCccccccccCCCCCCC
Q 001178 1078 QLAVGLT--D------GSVKVIEP-SETERKWGVAVPVDNGTD 1111 (1131)
Q Consensus 1078 ~l~s~~~--D------g~v~iW~~-~~~~~~w~~~~p~~~~~~ 1111 (1131)
++++... . +..+++++ .+++..|.+....+=|.+
T Consensus 226 i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~ 268 (276)
T 3no2_A 226 LYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMI 268 (276)
T ss_dssp EEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCC
T ss_pred EEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccce
Confidence 7777631 1 23467777 467777999888887777
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.54 E-value=2.3e-12 Score=137.36 Aligned_cols=243 Identities=12% Similarity=0.070 Sum_probs=178.2
Q ss_pred EEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEEecC
Q 001178 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSS-ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG 440 (1131)
Q Consensus 362 llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~spdg~~las~~~d~~i~vwd~~~ 440 (1131)
+|++++.++.|.+||.++|+.+-. +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 789999999999999999987642 22333 4688999999999988 45778999999 6
Q ss_pred CCccceeeeeecC-cCCeeEEEEecCCCceEEEEEcC-CCcEEEEeCCCceeEEecC------CccCeEEEeecccCCcc
Q 001178 441 SNDLCQSLEIDAH-VGGVNDLAFSYPNKQLCIVTCGD-DKLIRVWDLSGRKLFQFEG------HEAPVYSVCPHQKENIH 512 (1131)
Q Consensus 441 ~~~~~~~~~~~~h-~~~V~~l~~s~d~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~------h~~~v~~~~~~~~~~~~ 512 (1131)
|+.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|.+|+.+.++.. +......+++ .++++
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G~ 137 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINK--NKKGN 137 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEE--CTTSC
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceE--CCCCC
Confidence 77554 33333 34688999999999 6777766 7788888888988877642 1123333433 56778
Q ss_pred EEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccC----
Q 001178 513 FIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK---- 588 (1131)
Q Consensus 513 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---- 588 (1131)
++++...++.|..||.+ ++.+..+.... .+.++.+.++|+.++++.. +++|..+|..+|+.+..+.....
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGVQ 211 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence 99999999999999998 88877776543 4556788899999988764 66899999999999999874321
Q ss_pred -CceEEEEEeCCCCEEEEEEcC--------CcEEEEEc-CCCeEEEEEeccCCCCCcceEE
Q 001178 589 -KSAGVVQFDTTRNRILAAGED--------NQIKFWDM-DNVNMLTSTEAEGGLPSLPRLR 639 (1131)
Q Consensus 589 -~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~i~~v~ 639 (1131)
..+..++..++|+.+++.... +..+++.+ .+++.+..+........+..++
T Consensus 212 l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 126678888999888776421 23345555 4677777776665555555543
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.54 E-value=7e-13 Score=163.50 Aligned_cols=248 Identities=10% Similarity=-0.013 Sum_probs=168.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCC----eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDG----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
|...+..++|||||++++.+.+.+| .|++||+.+++.... ...+ ..+..++|+|||
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~~--~~~~~~~wspDg 182 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLER--VKFSCMAWTHDG 182 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEEE--ECSCCEEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------cccC--cccceEEEEeCC
Confidence 4447899999999996444433333 899999999886531 1111 125679999999
Q ss_pred CEEEEEeCCCe----------------EEEEEecCCCcc-ceeeeeecCcCCeeEEEEecCCCceEEEEEcC-----CCc
Q 001178 422 NFIGVAFTKHL----------------IHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD-----DKL 479 (1131)
Q Consensus 422 ~~las~~~d~~----------------i~vwd~~~~~~~-~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~-----d~~ 479 (1131)
+.|+.++.++. |.+|++.++... ........|...+..+.|+|||+. |+.++. +..
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR 260 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence 99999988766 999999886532 111122335666889999999995 444332 678
Q ss_pred EEEEe-CC------Cc-eeEEecCCccCeEEEeecccCCccEEEEEec----CCeEEEEeCCCCce--eEEecCCCc--e
Q 001178 480 IRVWD-LS------GR-KLFQFEGHEAPVYSVCPHQKENIHFIFSTAV----DGKIKAWLYDNVGS--RVDYDAPGL--W 543 (1131)
Q Consensus 480 i~iwd-~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~~wd~~~~~~--~~~~~~~~~--~ 543 (1131)
|++|| .+ +. ....+..+...+... |.+ ++..|+..+. .+.|.+||+.+... ...+..+.. .
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 99999 43 33 466676676666553 443 4455555443 33699999987642 233333433 6
Q ss_pred EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE----cCCcEEEEEcCC
Q 001178 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDN 619 (1131)
Q Consensus 544 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~ 619 (1131)
+..+.+++++.++++... ++...|++|+..+|+.+..+..+ ...+..+.++|+++.++... ..++|+.||+.+
T Consensus 338 ~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred EEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 888999877666666654 33457888998778877777765 44778889999987666443 357899999988
Q ss_pred Ce
Q 001178 620 VN 621 (1131)
Q Consensus 620 ~~ 621 (1131)
++
T Consensus 415 g~ 416 (710)
T 2xdw_A 415 EE 416 (710)
T ss_dssp SS
T ss_pred Cc
Confidence 76
No 191
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.54 E-value=8.6e-12 Score=138.36 Aligned_cols=236 Identities=11% Similarity=0.037 Sum_probs=163.2
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.+...+.+++|+|+|+ +++++..++.|.+||..+++... +...+...+.+++|+|+|+++
T Consensus 42 ~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~-------------------~~~~~~~~~~~i~~~~dg~l~ 101 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKR-------------------PFVSHKANPAAIKIHKDGRLF 101 (333)
T ss_dssp SSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE-------------------EEECSSSSEEEEEECTTSCEE
T ss_pred ccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEE-------------------EeeCCCCCcceEEECCCCcEE
Confidence 4667889999999998 78888889999999998876542 122455789999999999988
Q ss_pred EEEeCC----CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC------CCcEEEEeCCCceeEEec
Q 001178 425 GVAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD------DKLIRVWDLSGRKLFQFE 494 (1131)
Q Consensus 425 as~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~ 494 (1131)
++...+ +.|.+||.+++.... ...-..+...+.+++++|+|+ ++++... .+.|..+|..+..+..+.
T Consensus 102 v~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 102 VCYLGDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp EEECTTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEEEE
T ss_pred EEeCCCCCCCceEEEEeCCCCEEEE-EEccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEEEee
Confidence 887766 689999998865321 111113455799999999998 5666553 355666674443344443
Q ss_pred CCccCeEEEeecccCCccEE-EEEecCCeEEEEeCCCC-ceeEE------ecCC-CceEEEEEEccCCCEEEEEeecCCC
Q 001178 495 GHEAPVYSVCPHQKENIHFI-FSTAVDGKIKAWLYDNV-GSRVD------YDAP-GLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~~wd~~~~-~~~~~------~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
.+...+..++|++ +++.+ ++.+.++.|.+|+++.. ..... .... ...+..++++++|+..++...
T Consensus 179 ~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~---- 252 (333)
T 2dg1_A 179 QNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG---- 252 (333)
T ss_dssp EEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----
T ss_pred cCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC----
Confidence 3444577888854 55645 45566889999998642 22111 1111 136788999999997776643
Q ss_pred CceEEEEeCCCCeeeEEEecccC-----CceEEEEEeCCCCEEEEEEcCC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRK-----KSAGVVQFDTTRNRILAAGEDN 610 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~dg 610 (1131)
++.|.+||. +++.+..+..... ..+..++|+|+++.|++++.++
T Consensus 253 ~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 253 QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 678999998 5666666654322 1477899999988887766654
No 192
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=3e-08 Score=123.35 Aligned_cols=594 Identities=13% Similarity=0.121 Sum_probs=335.3
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 426 (1131)
...|+++.-.++|. |-.|+.+| +..||-.+ |+.+.... ... ....-....|.++.-.++|..|-.
T Consensus 18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~-~~~---~~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR--------FITYYKEE-QSS---SVQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEESSC-EEEECSSS--------EEEECCCS-SCS---SSCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC--EEEccCCc-CccccCCc--------eEEEEcCC-CCC---ccccccccccceEEEcCCCCEEEE
Confidence 46899999999995 55677666 56677432 22222100 000 000011346999999998983445
Q ss_pred EeCCCeEEEEEecCCCccceeee-eec---CcCCeeEEEEec--CCCceEEEEEcCCCcEEEEeCCCceeEEecC-----
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLE-IDA---HVGGVNDLAFSY--PNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG----- 495 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~-~~~---h~~~V~~l~~s~--d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----- 495 (1131)
|+.++-+..||..+++....... ... ....|.++.... ++. +..++.++.+..+|........+..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 66774599999887542210000 000 123588888877 665 4445544568889944444444321
Q ss_pred -CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe-------cCCCceEEEEEEccCCCEEEEEeecCCCCc
Q 001178 496 -HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-------DAPGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1131)
Q Consensus 496 -h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 567 (1131)
....|.++... .++ .|..++.++-+..||..+....... ......|.++...++|...+... .
T Consensus 160 l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~- 230 (781)
T 3v9f_A 160 LPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K- 230 (781)
T ss_dssp CSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T-
T ss_pred CCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C-
Confidence 12457777653 333 4556776766888887765433211 11234688999988888766542 3
Q ss_pred eEEEEeCCCCeeeEEEec------ccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEe-------cc-----
Q 001178 568 HLVEWNESEGALKRTYIG------FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE-------AE----- 629 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~----- 629 (1131)
-+.+||..+++....... .....|.++...+++ .|..|+..+-|.++|..++....... ..
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTS-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 689999877654432211 123368888877766 46667775678999988765432221 10
Q ss_pred CCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCC
Q 001178 630 GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRS 709 (1131)
Q Consensus 630 ~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~ 709 (1131)
-....|.++...++|. |-+|+.++-|..++..... +..+.. .+.
T Consensus 310 l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~-----------------------~~~---------- 353 (781)
T 3v9f_A 310 LSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT--FHTWSY-----------------------SPT---------- 353 (781)
T ss_dssp BSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS--CEEEC-------------------------------------
T ss_pred CCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc--ceeecc-----------------------Ccc----------
Confidence 1123578888888876 4556766777777764431 000000 000
Q ss_pred CCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecc
Q 001178 710 SPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNG 789 (1131)
Q Consensus 710 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 789 (1131)
. .....-....|.+++..++|. |.+++.++
T Consensus 354 -----------------------------~--------------------~~~~~l~~~~v~~i~~d~~g~-lWigt~~~ 383 (781)
T 3v9f_A 354 -----------------------------Q--------------------MNESSLSNKVVSSVCDDGQGK-LWIGTDGG 383 (781)
T ss_dssp -----------------------------C--------------------CCSSCCSSSCEEEEEECTTSC-EEEEEBSS
T ss_pred -----------------------------c--------------------cccCCCCCcceEEEEEcCCCC-EEEEeCCC
Confidence 0 000001234577888777776 44455455
Q ss_pred eeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEE
Q 001178 790 VQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTT 869 (1131)
Q Consensus 790 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~ 869 (1131)
-+..|+...... ..+. .. .......|.+++..++|.+.+...++.|..++..+++....
T Consensus 384 Gl~~~~~~~~~~------------~~~~-~~--------~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~ 442 (781)
T 3v9f_A 384 GINVFENGKRVA------------IYNK-EN--------RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQII 442 (781)
T ss_dssp CEEEEETTEEEE------------ECC--------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEEC
T ss_pred cEEEEECCCCeE------------EEcc-CC--------CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEe
Confidence 566665432110 0000 00 01235678999998888877654467799999887755432
Q ss_pred Ee--CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeeccc-----ccCeeEEEEccCCCEEEEEeCCCcEE
Q 001178 870 FM--SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH-----QKHITGLAFSTNLNILVSSGSDAQLI 942 (1131)
Q Consensus 870 ~~--~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h-----~~~V~~l~~s~dg~~l~s~~~Dg~v~ 942 (1131)
.. .....|.++...+ ++.+.+ |+. +-|..|+..+++........ ...|.++...++|.+.+....+| |.
T Consensus 443 ~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~ 518 (781)
T 3v9f_A 443 ELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VG 518 (781)
T ss_dssp CSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EE
T ss_pred ccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EE
Confidence 21 2346788998887 666554 555 56888998776543322212 35799999999988766544344 77
Q ss_pred EEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeE-EEEeCCCcccceeeecCCC-CCCCeEEEEEccC
Q 001178 943 FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQL-AIYDGSKMECIRQWVPQDV-LSSPISSAAYSCN 1020 (1131)
Q Consensus 943 lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i-~vwd~~~~~~~~~~~~~~~-~~~~v~~i~~s~d 1020 (1131)
.|+..+++... .....+-....+.++...++|.+.+++. +.+ ..||..+++. ..+....+ ....|.++...++
T Consensus 519 ~~~~~~~~~~~---~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~ 593 (781)
T 3v9f_A 519 IYTPDMQLVRK---FNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKN 593 (781)
T ss_dssp EECTTCCEEEE---ECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSS
T ss_pred EEeCCCCeEEE---ccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE-EEccccCCCCCceEEEEEECCC
Confidence 88887654221 1112222235688999999998777666 455 8898876653 22221111 1346889999999
Q ss_pred CCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCC
Q 001178 1021 SQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSET 1096 (1131)
Q Consensus 1021 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~ 1096 (1131)
|++.+++ ++.|..|+..+++. ..+......+ ......-++...+ ++ .|..|+.+| +..+++..-
T Consensus 594 g~lW~~t--~~Gl~~~~~~~~~~-~~~~~~dGl~------~~~f~~~~~~~~~-~G-~l~~g~~~G-l~~f~p~~~ 657 (781)
T 3v9f_A 594 GNIWAST--NTGISCYITSKKCF-YTYDHSNNIP------QGSFISGCVTKDH-NG-LIYFGSING-LCFFNPDIA 657 (781)
T ss_dssp SCEEEEC--SSCEEEEETTTTEE-EEECGGGTCC------SSCEEEEEEEECT-TS-CEEEEETTE-EEEECSCCG
T ss_pred CCEEEEc--CCceEEEECCCCce-EEecccCCcc------ccccccCceEECC-CC-EEEEECCCc-eEEEChhhc
Confidence 9876654 34588888876653 2332211111 1111111333333 44 566788788 667776543
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=7e-13 Score=162.94 Aligned_cols=247 Identities=11% Similarity=-0.039 Sum_probs=163.7
Q ss_pred cCCCCCEEEEEEcCCCCEEEEE-----eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCc-
Q 001178 406 KDSSISVSRVAWSPDGNFIGVA-----FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL- 479 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~-----~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~- 479 (1131)
.+|...+.+++|||||++||.+ +.+.+|++||+.+++.+.. ..+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 4677789999999999999944 4457899999999875411 011111 126899999999 6777777765
Q ss_pred ------------EEEEe-CCCc----eeEEecCCccCeEEEeecccCCccEEEEEecCC----eEEEEeCCCCceeEEec
Q 001178 480 ------------IRVWD-LSGR----KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG----KIKAWLYDNVGSRVDYD 538 (1131)
Q Consensus 480 ------------i~iwd-~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg----~i~~wd~~~~~~~~~~~ 538 (1131)
|++|+ .++. .+.....|...+..+.|+ ++|++|+.++.++ .|.+|+..++. ...+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS--RDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC--TTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC--CCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence 99999 4444 334444566678888885 5667777776655 66667654443 33333
Q ss_pred CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee--eEEEeccc-CCceEEEEEeCCCCEEEEEEcCCcEEEE
Q 001178 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL--KRTYIGFR-KKSAGVVQFDTTRNRILAAGEDNQIKFW 615 (1131)
Q Consensus 539 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw 615 (1131)
.+...+....+ ++|. ++..+.....++.|++||+.++.. ...+..+. ...+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 34444455555 6777 555543222468999999987753 23333333 4467778888 66778888889988888
Q ss_pred EcC-CCeEEEEEeccCCCCCcceEEEcCCCCEEEEEEC----CCcEEEEecCCC
Q 001178 616 DMD-NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA----DQGIKILANADG 664 (1131)
Q Consensus 616 d~~-~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~----dg~i~iw~~~~~ 664 (1131)
.+. .++....+..+. ...+..++++|++..++.... .+.|++||+.++
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 654 355555554332 225778889999887764433 468999998776
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=3.2e-13 Score=165.98 Aligned_cols=248 Identities=10% Similarity=-0.063 Sum_probs=161.8
Q ss_pred CCCcEEEEEEecCCCcEEEEE----cCCCeEEEEECCCCccc-ccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 346 QGSSVVSMDFHPFHHTLLVVG----CGDGEITLWDVGLRERL-VSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg----~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
|...+.+++|||||++++++. +.+.+|++||+.+|+.+ .. .+.+. ....++|+||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~------------------~~~~~--~~~~~~wspD 178 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD------------------VIEGG--KYATPKWTPD 178 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC------------------CBSCC--TTCCCEECTT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc------------------ccCcc--cccceEEecC
Confidence 556799999999999644443 33468999999998865 21 01111 1257899999
Q ss_pred CCEEEEEeCCCe-------------EEEEEecCCCcc-ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC----cEEE
Q 001178 421 GNFIGVAFTKHL-------------IHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK----LIRV 482 (1131)
Q Consensus 421 g~~las~~~d~~-------------i~vwd~~~~~~~-~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~----~i~i 482 (1131)
|+.|+.++.|.. |++|++.++... ........|...+.++.|+|||+. |+.++.++ .|++
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYW 256 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEE
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEE
Confidence 999999988776 999999887532 122233446678999999999995 45444444 6777
Q ss_pred EeCCCceeEEecCCccCeEEEeecccCCccEEEEEe---cCCeEEEEeCCCCce---eEEecCC-CceEEEEEEccCCCE
Q 001178 483 WDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA---VDGKIKAWLYDNVGS---RVDYDAP-GLWCTTMLYSADGSR 555 (1131)
Q Consensus 483 wd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~---~~~~~~~-~~~v~~~~~s~~g~~ 555 (1131)
||..+.....+..+...+....+ +++.+++.+. .++.|.+||++++.. ...+..+ ...+..+.++ ++..
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~---~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~l 332 (695)
T 2bkl_A 257 KRPGEKDFRLLVKGVGAKYEVHA---WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHL 332 (695)
T ss_dssp ECTTCSSCEEEEECSSCCEEEEE---ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEE
T ss_pred EcCCCCceEEeecCCCceEEEEe---cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEE
Confidence 77433345556556666665555 2334444443 358899999977653 2223222 4467888888 5666
Q ss_pred EEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE----cCCcEEEEEcCCCeE
Q 001178 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDNVNM 622 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~ 622 (1131)
+++... ++...|++++.. ++..+.+..+....+..++++|+++.++... ..++|++||+.+++.
T Consensus 333 v~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 333 SLEYLK--DATSEVRVATLK-GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEE--TTEEEEEEEETT-CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEE--CCEEEEEEEeCC-CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 666654 223345555543 5555555544344667788899988776433 347899999998774
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.52 E-value=2.1e-11 Score=136.01 Aligned_cols=202 Identities=11% Similarity=0.035 Sum_probs=142.9
Q ss_pred eeEEEecCCCCEEEEEe---CCeEEEEECCCceeEEE-EeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEE
Q 001178 836 VPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911 (1131)
Q Consensus 836 i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~ 911 (1131)
...++++|||++|++++ ++.|.++| .+++.+.+ +.... ++.+.|++++.+++.+.||.+.+++. +++...
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 34789999999999876 36799999 99998888 65432 24556645667777889999999999 877653
Q ss_pred eec-----ccccCe-eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC------CCCCCCceEEEEcCCCcE
Q 001178 912 KLK-----GHQKHI-TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA------GKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 912 ~~~-----~h~~~V-~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d~~~ 979 (1131)
... ....++ ....+.+++..++..+..+.+.+.|+.+........+.... +..+.....++++||++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 321 112222 33567777766555557889999999765322111111110 111123445789999998
Q ss_pred EEEEe-----------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEECCCCceeeE
Q 001178 980 LLVNH-----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCR 1046 (1131)
Q Consensus 980 l~~~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~~ 1046 (1131)
+.+.. .+.|.++|..+++.+..+... ....+++|+|||+ +++++. .++.|.|||+.+++.+..
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g----~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG----HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC----CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 88743 257999999999999888553 4689999999999 777777 489999999999999887
Q ss_pred e
Q 001178 1047 I 1047 (1131)
Q Consensus 1047 ~ 1047 (1131)
+
T Consensus 357 i 357 (373)
T 2mad_H 357 T 357 (373)
T ss_pred e
Confidence 4
No 196
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.52 E-value=3.7e-12 Score=138.57 Aligned_cols=236 Identities=12% Similarity=0.050 Sum_probs=166.3
Q ss_pred ccCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 405 VKDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++|+++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445566788999999998 7788888999999999876 32 3556777899999999998 77777778899999
Q ss_pred e-CCCceeEEecCC----ccCeEEEeecccCCccEEEE----Eec-------------CCeEEEEeCCCCceeEEecCCC
Q 001178 484 D-LSGRKLFQFEGH----EAPVYSVCPHQKENIHFIFS----TAV-------------DGKIKAWLYDNVGSRVDYDAPG 541 (1131)
Q Consensus 484 d-~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s----~s~-------------dg~i~~wd~~~~~~~~~~~~~~ 541 (1131)
| .+++........ ...+..+++. ++|.++++ ++. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 9 477654333221 1245667775 46677776 331 2455555544 3333444455
Q ss_pred ceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC-CCee---eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEc
Q 001178 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-EGAL---KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 542 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1131)
.....++|+|+|+.+++... ++.|++|++. +++. ...+ ......+..++++++|+.+++. ++.|.+|+.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 56789999999999844432 6789999986 5554 3444 2233356679999999866555 789999998
Q ss_pred CCCeEEEEEeccCCCCCcceEEE-cCCCCEEEEEECCCcEEEEecCC
Q 001178 618 DNVNMLTSTEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 618 ~~~~~~~~~~~~~~~~~i~~v~~-sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
. ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+
T Consensus 245 ~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 245 D-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp T-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred C-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 6 677776665442 789999 58999999988764 33344433
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=5.7e-12 Score=137.66 Aligned_cols=206 Identities=13% Similarity=0.124 Sum_probs=144.3
Q ss_pred CeeEEEecCCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec-ceeE
Q 001178 835 VVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-DEVK 910 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~-~~~~ 910 (1131)
....++|+|||+++.++. ++.|.++|+.+++.+.++.... . ...+.. +.+.+++.+.||.+.+.++.+ ++..
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEE
Confidence 345689999999888875 4789999999999999987533 1 223333 566777888899998888876 5543
Q ss_pred Eeeccc----ccCee-EEEEc-cCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec------CCCCCCCCceEEEEcCCCc
Q 001178 911 TKLKGH----QKHIT-GLAFS-TNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL------PAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 911 ~~~~~h----~~~V~-~l~~s-~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~------~~~~~~~~v~~v~~s~d~~ 978 (1131)
.....+ ..++. ..+|. ++|++++ .+.+|+|.+.|+.+........... ..+-.......++++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~ 292 (386)
T 3sjl_D 214 ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD 292 (386)
T ss_dssp EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred EeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCC
Confidence 222111 12222 24664 6775554 5568999999997754221111110 0111123455688899999
Q ss_pred EEEEEe-----------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEECCCCceee
Q 001178 979 RLLVNH-----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRC 1045 (1131)
Q Consensus 979 ~l~~~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~ 1045 (1131)
.+++.. .+.|.++|+.+++.+..+... ..+++++|++|++ +|+++. .++.|.|+|..+++.+.
T Consensus 293 ~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg----~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 293 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC----CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 988853 246999999999999998764 4788999999997 777765 48999999999999999
Q ss_pred EecC
Q 001178 1046 RIAP 1049 (1131)
Q Consensus 1046 ~~~~ 1049 (1131)
++..
T Consensus 369 ~i~~ 372 (386)
T 3sjl_D 369 SVNQ 372 (386)
T ss_dssp EECC
T ss_pred EecC
Confidence 8874
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.50 E-value=4.5e-12 Score=139.68 Aligned_cols=269 Identities=12% Similarity=-0.010 Sum_probs=182.9
Q ss_pred CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCcccee
Q 001178 368 GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQS 447 (1131)
Q Consensus 368 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~ 447 (1131)
.+++|.+||..+++..... +.... -.........+++. +++.+++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i----~~~~n---------~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEV----FYRAN---------GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSH----HHHHH---------SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhh----Hhhhc---------CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 3789999999998865421 00000 01122456778774 455666666789999999999876543
Q ss_pred eeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCc-----cCeEEEeecccCCccEEEEEe-cC
Q 001178 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE-----APVYSVCPHQKENIHFIFSTA-VD 520 (1131)
Q Consensus 448 ~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~s-~d 520 (1131)
+. .......++++++++ ++++...++.|.+|| .+++....+.... .....+++ .++..+++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~---~~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ---YGKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE---ETTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE---ECCEEEEEcCCCC
Confidence 33 345689999999985 666666789999999 6777666665332 14456665 2334444443 48
Q ss_pred CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCC------CceEEEEeCCCCeeeEEEecccCCceEEE
Q 001178 521 GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG------DSHLVEWNESEGALKRTYIGFRKKSAGVV 594 (1131)
Q Consensus 521 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 594 (1131)
+.|.+||..+.+....+... .....+.++|+|++++++....+. .+.|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 99999999988776665543 335688999999876665421000 26899999999998877764333367889
Q ss_pred EEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC-CCCEEEEE----ECCCcEEEEecC
Q 001178 595 QFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNLLVVT----TADQGIKILANA 662 (1131)
Q Consensus 595 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~l~~~----~~dg~i~iw~~~ 662 (1131)
+++|++++++++.. .|.+||..+++................++++| ++.+.++. ..++.|.+|+..
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 99999999888755 89999998877532111111122568899999 55555555 568899999986
No 199
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.50 E-value=1.4e-11 Score=134.66 Aligned_cols=151 Identities=8% Similarity=-0.063 Sum_probs=111.3
Q ss_pred cccCCccEEEEEec-----CCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec------CCCCceEEEEeC
Q 001178 506 HQKENIHFIFSTAV-----DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNE 574 (1131)
Q Consensus 506 ~~~~~~~~l~s~s~-----dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~~~~~~i~iwd~ 574 (1131)
.+.++++.++.... ++.|.+.|..+.+....+.....+ . ++++|||++++++... +..++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34567777777755 689999999998888777655555 4 9999999999887520 011567999999
Q ss_pred CCCeeeEEEeccc------CCceEEEEEeCCCCEEEEEEc--CCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCE
Q 001178 575 SEGALKRTYIGFR------KKSAGVVQFDTTRNRILAAGE--DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646 (1131)
Q Consensus 575 ~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~ 646 (1131)
.+++.+..+.... ......+.|+|||++++++.. ++.|.++|+.+++.+..+...+. ...+....+.
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P~g~~~ 191 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFPTAPDT 191 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeecCCCce
Confidence 9999988875321 113445899999999998864 68999999999999998865431 2233334566
Q ss_pred EEEEECCCcEEEEecCC
Q 001178 647 LVVTTADQGIKILANAD 663 (1131)
Q Consensus 647 l~~~~~dg~i~iw~~~~ 663 (1131)
+++.+.||.+.+.++.+
T Consensus 192 ~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp EEEEETTSCEEEEECCS
T ss_pred eEEECCCCCEEEEECCC
Confidence 77888888888887654
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.49 E-value=2.5e-10 Score=124.14 Aligned_cols=239 Identities=10% Similarity=0.049 Sum_probs=169.8
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCC
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~ 486 (1131)
.+...+.+++++++|+.+++...++.|.+||.. ++ +.. ..+..+...+.++++.++|. ++++...++.|..||..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITE-YPLPTPDAKVMCLTISSDGE--VWFTENAANKIGRITKK 86 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEE-ecCCcccCceeeEEECCCCC--EEEeCCCCCeEEEECCC
Confidence 455689999999999988877668899999988 44 221 12233456799999999998 67777778899999955
Q ss_pred CceeEEec--CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee-EEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 487 GRKLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 487 ~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
++. ..+. .....+.++++. +++.++++...++.|..||. ++... .........+..++++++|+..++...
T Consensus 87 g~~-~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-- 160 (299)
T 2z2n_A 87 GII-KEYTLPNPDSAPYGITEG--PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ-- 160 (299)
T ss_dssp SCE-EEEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT--
T ss_pred CcE-EEEeCCCcCCCceeeEEC--CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC--
Confidence 543 2222 244568888875 45577777777889999998 33332 223334457899999999987776542
Q ss_pred CCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
.+.|..||. +++............+..+++++++..+++...++.|.+|+. +++... +........+..++++++
T Consensus 161 --~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 161 --NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAG 235 (299)
T ss_dssp --TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECST
T ss_pred --CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCC
Confidence 678999998 666554322222335778999999887666666889999999 665433 333333346789999999
Q ss_pred CCEEEEEECCCcEEEEec
Q 001178 644 GNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~ 661 (1131)
|++.++...++.|..|+.
T Consensus 236 g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 236 IDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TCEEEEETTTTEEEEEET
T ss_pred CCEEEeccCCceEEEECC
Confidence 986666557788999986
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.49 E-value=1.4e-10 Score=126.35 Aligned_cols=279 Identities=10% Similarity=-0.018 Sum_probs=191.0
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
....+.+++++++|+ +.++...++.|.+||.. ++... + .+..+...+.+++++++|++++
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~------~------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE------F------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE------E------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE------E------------ECCCCCCcceeEEECCCCCEEE
Confidence 456899999999997 66766678999999987 54321 0 1223346799999999999888
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEE-ecCCccCeEEEe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVC 504 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~ 504 (1131)
+...++.|..||.. ++. . ...+......+.++++.++|+ ++++...++.|..+|..++.... +......+..++
T Consensus 78 ~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEE
T ss_pred EecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEE
Confidence 77778899999987 442 2 122333446789999999998 67777778899999955665432 333445678888
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCceeE-EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
+. +++++.++...++.|..++.. +.... ........+..++++++|+..++... .+.|.+|+. +++.....
T Consensus 153 ~d--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 153 LG--SDNALWFTENQNNSIGRITNT-GKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISEYD 224 (300)
T ss_dssp EC--TTSSEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEE
T ss_pred EC--CCCCEEEEecCCCeEEEECCC-CcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEEEE
Confidence 75 455666666667899999983 33222 22233456889999999987666532 568999998 55544332
Q ss_pred ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
.......+..++++++++..++...++.|..|+. +++.. ..........+.++++.++|.+.++.. . .|..++.
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 2222335788999999886666656789999998 44433 332332234678999999998665544 4 6666654
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.49 E-value=5e-12 Score=135.47 Aligned_cols=239 Identities=9% Similarity=-0.043 Sum_probs=164.8
Q ss_pred cEEEEEEecCCCcEEE-EEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 349 SVVSMDFHPFHHTLLV-VGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 349 ~V~~~~fspdg~~lla-sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
...+++++|+|+ +++ +.+.++.|.+||..++.... ....+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence 789999999997 666 54678899999976554321 011233567889999999966666
Q ss_pred eCCCeEEEEEecCCCccceeeeee-cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEee
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCP 505 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~ 505 (1131)
. ++.|.+||..+.... .+. .....+.++++.++|+ ++++...++.|.+|+ .+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765422 122 2335789999999998 777777788999998 333333222233345677887
Q ss_pred cccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEec
Q 001178 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585 (1131)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 585 (1131)
.+ +++++++...++.|.+|+.+..............+..++++++|...++... ++.|.+|+........ ...
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEE-CCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCccee-ecc
Confidence 54 5567777777889999998765544332233356889999999976666543 6789999987654332 221
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 586 FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
.....+..++++++|+.+++...++.|+++++...+
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 122357889999999988888889999999987543
No 203
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=2.4e-08 Score=124.37 Aligned_cols=540 Identities=11% Similarity=0.040 Sum_probs=309.0
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC--CCCEEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGNFIG 425 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~~la 425 (1131)
..|.++...++|.. |-.|+.++-+..||..+++... +..... . ...-....|.++.... +|...+
T Consensus 66 n~I~~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~f~~------~~~~~~----~--~~~l~~~~i~~i~~d~~~~g~lwi 132 (781)
T 3v9f_A 66 NELNEVYTDPVQPV-IWIATQRAGLNAYNYETQSFSV------YQYNPE----D--PQSLITNDVTHITSSVQAGKGLWV 132 (781)
T ss_dssp SCEEEEEECSSSSE-EEEEESSSCEEEEETTTTEEEE------ECCCTT----C--SSSCSCSCEEEEEECSSTTSEEEE
T ss_pred cccceEEEcCCCCE-EEEEeCCCCcceECCCCCeEEe------eccccC----C--CCCcccCcceEEEecCccCCCEEE
Confidence 46999999988862 4456667579999988765432 100000 0 0001124688998888 776544
Q ss_pred EEeCCCeEEEEEecCCCccceeee--ee-cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecC-------
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLE--ID-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG------- 495 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~--~~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~------- 495 (1131)
++.++-|..||.++++.. .... .. -....|.++...++|. +..+..++-+..||........+..
T Consensus 133 -~t~~~gl~~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 207 (781)
T 3v9f_A 133 -CTYYRGIEYLDIATGKFT-HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNS 207 (781)
T ss_dssp -EESSSCEEEEETTTTEEE-EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-------
T ss_pred -EECCCCeeEEECCCCeEE-eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCccc
Confidence 553445888998765421 1100 00 1134588888888876 4445555568889944443333321
Q ss_pred -CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec-------CCCceEEEEEEccCCCEEEEEeecCCCCc
Q 001178 496 -HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-------APGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1131)
Q Consensus 496 -h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 567 (1131)
....|.++... .++. |..++.+ -+..||..+........ .....|.++...++|...+... .+
T Consensus 208 l~~~~i~~i~~d--~~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~~ 278 (781)
T 3v9f_A 208 LPGNDVRCIYKD--TNGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE-----LN 278 (781)
T ss_dssp -CCSSEEEEEEC--TTCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES-----SS
T ss_pred CCCCceeEEEEc--CCCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC-----CC
Confidence 13457777653 4444 4445555 68888876554332111 1234689999988887665442 35
Q ss_pred eEEEEeCCCCeeeEEEe-------------cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEe-------
Q 001178 568 HLVEWNESEGALKRTYI-------------GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE------- 627 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------- 627 (1131)
-|.++|..++....... +.....|.++...++|. |..|+.++-|..++..+........
T Consensus 279 Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 357 (781)
T 3v9f_A 279 GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNE 357 (781)
T ss_dssp CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCS
T ss_pred CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccccc
Confidence 68889987665432211 11233688888887765 6667777779999887654332211
Q ss_pred ccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccccccccc
Q 001178 628 AEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVD 707 (1131)
Q Consensus 628 ~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 707 (1131)
..-....|.++...++|.+ .+|+.++-|..|+..++. ...+. +.
T Consensus 358 ~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~--~~~~~-------------------------~~-------- 401 (781)
T 3v9f_A 358 SSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRV--AIYNK-------------------------EN-------- 401 (781)
T ss_dssp SCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEE--EECC------------------------------------
T ss_pred CCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCe--EEEcc-------------------------CC--------
Confidence 0111235788888887764 456666667888764331 00000 00
Q ss_pred CCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeee
Q 001178 708 RSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS 787 (1131)
Q Consensus 708 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 787 (1131)
.......|.++...++|...+ ++.
T Consensus 402 -------------------------------------------------------~~~~~~~v~~i~~d~~g~lWi-gt~ 425 (781)
T 3v9f_A 402 -------------------------------------------------------RELLSNSVLCSLKDSEGNLWF-GTY 425 (781)
T ss_dssp ---------------------------------------------------------CCCSBEEEEEECTTSCEEE-EET
T ss_pred -------------------------------------------------------CCCCCcceEEEEECCCCCEEE-Eec
Confidence 000235577777777776444 454
Q ss_pred cceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeE
Q 001178 788 NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVM 867 (1131)
Q Consensus 788 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~ 867 (1131)
++-+..++... +..............|.++...++|++.+... +.|.+||..+++..
T Consensus 426 ~~Gl~~~~~~~----------------------~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 426 LGNISYYNTRL----------------------KKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp TEEEEEECSSS----------------------CEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC
T ss_pred cCCEEEEcCCC----------------------CcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE
Confidence 44555554322 11111100012356788999988887665544 67999998876654
Q ss_pred EEEeCC-----CCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecc---cccCeeEEEEccCCCEEEEEeCCC
Q 001178 868 TTFMSP-----PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG---HQKHITGLAFSTNLNILVSSGSDA 939 (1131)
Q Consensus 868 ~~~~~~-----~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~---h~~~V~~l~~s~dg~~l~s~~~Dg 939 (1131)
...... ...|.++...+ ++.+.+ |+.++-+..|+..+++...-... ....|.++...++|.+.++.. +|
T Consensus 483 ~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~G 559 (781)
T 3v9f_A 483 HHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EG 559 (781)
T ss_dssp EEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TE
T ss_pred ecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CC
Confidence 433222 35789999888 666554 55545577788766654332111 235689999999988766544 66
Q ss_pred cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCC---CCCeEEEE
Q 001178 940 QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL---SSPISSAA 1016 (1131)
Q Consensus 940 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~v~~i~ 1016 (1131)
.|..||..+++... .....+-....+.++...++|.+.+++ .+.|..++..+.+. ..+....+. .-...++.
T Consensus 560 lv~~~d~~~~~~~~---~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~Gl~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~ 634 (781)
T 3v9f_A 560 LVCFPSARNFDYQV---FQRKEGLPNTHIRAISEDKNGNIWAST-NTGISCYITSKKCF-YTYDHSNNIPQGSFISGCVT 634 (781)
T ss_dssp EEEESCTTTCCCEE---ECGGGTCSCCCCCEEEECSSSCEEEEC-SSCEEEEETTTTEE-EEECGGGTCCSSCEEEEEEE
T ss_pred ceEEECCCCCcEEE---ccccCCCCCceEEEEEECCCCCEEEEc-CCceEEEECCCCce-EEecccCCccccccccCceE
Confidence 54888887654221 112222223567889999999876665 45578888775543 233222111 11235677
Q ss_pred EccCCCEEEEEecCCcEEEEECCC
Q 001178 1017 YSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 1017 ~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
..++|++++ |+.+| +..++...
T Consensus 635 ~~~~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 635 KDHNGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp ECTTSCEEE-EETTE-EEEECSCC
T ss_pred ECCCCEEEE-ECCCc-eEEEChhh
Confidence 788888666 45565 56666553
No 204
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.47 E-value=8.5e-12 Score=133.62 Aligned_cols=240 Identities=10% Similarity=0.027 Sum_probs=165.9
Q ss_pred CeeEEEecCCCCEEE-EEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe
Q 001178 835 VVPCVALSKNDSYVM-SAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la-~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~ 912 (1131)
...+++++++|++.+ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|.+||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999999766 434 68899999876543322223335688999999 777666555 88999999776543322
Q ss_pred ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEE
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIY 991 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vw 991 (1131)
.......+.+++++++|+++++...++.|.+|+..+...... ... .......++++++|+++++.. ++.|.+|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-----~~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-----PFT-GLNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-----CCC-SCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-----ccc-cCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence 223335689999999999888888888999997655332111 111 114567899999998666654 6899999
Q ss_pred eCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEE
Q 001178 992 DGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTS 1071 (1131)
Q Consensus 992 d~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~ 1071 (1131)
+............. ...+.+++++++|.++++...++.|.+|+..+..... ... .+...+..+++
T Consensus 177 ~~~~~~~~~~~~~~---~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-----------~~~~~p~~i~~ 241 (270)
T 1rwi_B 177 EAESNNQVVLPFTD---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-----------TGLNTPLAVAV 241 (270)
T ss_dssp CTTTCCEEECCCSS---CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-----------CSCSCEEEEEE
T ss_pred ecCCCceEeecccC---CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-----------CCCCCceeEEE
Confidence 98876544332222 3678999999999877777678899999987654322 110 11123557888
Q ss_pred cCCCCCeEEEEecCCcEEEEecCCCcc
Q 001178 1072 HPQEPNQLAVGLTDGSVKVIEPSETER 1098 (1131)
Q Consensus 1072 ~p~~~~~l~s~~~Dg~v~iW~~~~~~~ 1098 (1131)
.| +++++++...+++|+++++...+.
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCccc
Confidence 88 567999999999999999987763
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.45 E-value=1.7e-10 Score=128.57 Aligned_cols=274 Identities=9% Similarity=-0.041 Sum_probs=176.9
Q ss_pred EEecCCCcEEEEEc-CCC---eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe-
Q 001178 354 DFHPFHHTLLVVGC-GDG---EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF- 428 (1131)
Q Consensus 354 ~fspdg~~llasg~-~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~- 428 (1131)
...|++++++++-. ..+ +|.+||..+++.+.. +.....+ .+++||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 34467765444332 222 899999999886542 1112223 899999999998885
Q ss_pred ---------CCCeEEEEEecCCCccceeeeee--cC---cCCeeEEEEecCCCceEEEEEc--CCCcEEEEeCCCceeEE
Q 001178 429 ---------TKHLIHLYTYQGSNDLCQSLEID--AH---VGGVNDLAFSYPNKQLCIVTCG--DDKLIRVWDLSGRKLFQ 492 (1131)
Q Consensus 429 ---------~d~~i~vwd~~~~~~~~~~~~~~--~h---~~~V~~l~~s~d~~~~~l~s~s--~d~~i~iwd~~~~~~~~ 492 (1131)
.++.|.+||..+.+.+.... +. .+ ...-..++|+|||+ +|+.++ .++.|.++|.+++.+..
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD~t~~~~~~ 162 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVVQGGSSDDQ 162 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEECCCCEEeE
Confidence 36789999998876544221 11 00 12345899999999 455554 25789999933444444
Q ss_pred -ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec-----CCCce-EEEEEEccCCCEEEEEeecCCC
Q 001178 493 -FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-----APGLW-CTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 493 -~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----~~~~~-v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
+. .... +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 163 ~i~-~~~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---- 232 (373)
T 2mad_H 163 LLS-SPTC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---- 232 (373)
T ss_pred EcC-CCce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----
Confidence 33 2222 33333333 45667788999999999 665542211 11111 233556777666555543
Q ss_pred CceEEEEeCCCCe--eeEEEecc---------cCCceEEEEEeCCCCEEEEEEc----------CCcEEEEEcCCCeEEE
Q 001178 566 DSHLVEWNESEGA--LKRTYIGF---------RKKSAGVVQFDTTRNRILAAGE----------DNQIKFWDMDNVNMLT 624 (1131)
Q Consensus 566 ~~~i~iwd~~~~~--~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~ 624 (1131)
.+.+.+.|...+. .+..+... .......+.++|++++++++.. ++.|.++|..+++.+.
T Consensus 233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 6689999986543 22222110 0112344789999998888653 3579999999999999
Q ss_pred EEeccCCCCCcceEEEcCCCC-EEEEEE-CCCcEEEEecCCC
Q 001178 625 STEAEGGLPSLPRLRFNKEGN-LLVVTT-ADQGIKILANADG 664 (1131)
Q Consensus 625 ~~~~~~~~~~i~~v~~sp~~~-~l~~~~-~dg~i~iw~~~~~ 664 (1131)
.+.... ....++|+|||+ .++++. .++.|.++|..++
T Consensus 313 ~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 313 QISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 886544 468999999999 777777 5899999999887
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.44 E-value=2.3e-11 Score=135.65 Aligned_cols=204 Identities=14% Similarity=0.129 Sum_probs=144.8
Q ss_pred eeEEEecCCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe
Q 001178 836 VPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1131)
Q Consensus 836 i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~ 912 (1131)
...++|+|||+++.++. ++.|.+.|+.+++.+.++..... ....|++.+.+++.+.||.+.+.+..+++....
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 34578999999998876 46899999999999998875322 334443446666777888888888765554422
Q ss_pred ----ecccccCe-eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC------CCCCCCceEEEEcCCCcEEE
Q 001178 913 ----LKGHQKHI-TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA------GKLPVGETRVQFHSDQVRLL 981 (1131)
Q Consensus 913 ----~~~h~~~V-~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d~~~l~ 981 (1131)
+.....++ ..+.|++++..++..+..+.|.+.|..+............. +........++++||+.+++
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly 334 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY 334 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence 22112222 23578999988877788899999998764422111111110 00112233478999999887
Q ss_pred EEe-----------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEECCCCceeeEe
Q 001178 982 VNH-----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCRI 1047 (1131)
Q Consensus 982 ~~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~~~ 1047 (1131)
+.. ++.|.++|..+.+.+..+... ....+++|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg----~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELG----HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEECC----CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 752 347999999999999998764 3688999999999 888888 5899999999999999887
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=8.8e-12 Score=154.22 Aligned_cols=246 Identities=11% Similarity=0.034 Sum_probs=159.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCc--
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTK-----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL-- 479 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~-- 479 (1131)
+|...+..++|||||++||.++.+ .+|++||+.+++.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 455578899999999999987654 4699999999875431 112222467899999 7 4555555443
Q ss_pred ------------EEEEe-CCCc----eeEEecCCccCeEEEeecccCCccEEEEEecCC-----eEEEEeCCCCc-e-eE
Q 001178 480 ------------IRVWD-LSGR----KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG-----KIKAWLYDNVG-S-RV 535 (1131)
Q Consensus 480 ------------i~iwd-~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~-~-~~ 535 (1131)
|++|+ .++. .+.....+...+..+.| ++||++|+..+.++ .|++||+.++. . ..
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 88999 4443 22233334345777777 45677888776544 89999998762 2 33
Q ss_pred EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC-eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEE
Q 001178 536 DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF 614 (1131)
Q Consensus 536 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 614 (1131)
.+..+...+... ++|+|+.|+..+......+.|++||+.++ .....+..+....+..+.++ ++..+++...|+..++
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 444443334444 35899999888754334678999999875 23333334444456667777 4567777888888777
Q ss_pred EEcC-CCeEEEEEeccCCCCCcceEEEcCCCCEEEEEE----CCCcEEEEecCCC
Q 001178 615 WDMD-NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT----ADQGIKILANADG 664 (1131)
Q Consensus 615 wd~~-~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~----~dg~i~iw~~~~~ 664 (1131)
|.+. ++.....+..+. ...+..++++|++..++... ..+.|++||+.++
T Consensus 389 ~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 7554 455555554322 23578889999987665332 2468999998776
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.38 E-value=1.5e-11 Score=152.19 Aligned_cols=247 Identities=8% Similarity=-0.055 Sum_probs=155.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCC----CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGD----GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
|...+..++|||||++++++.+.+ .+|++||+.+|+.+.. ..+...+..++||||
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN- 219 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-
Confidence 334788999999999644443333 3699999999886531 001112357899999
Q ss_pred CEEEEEeCCCe--------------EEEEEecCCCcc-ceeeeeecCcCCeeEEEEecCCCceEEEEEcC-----CCcEE
Q 001178 422 NFIGVAFTKHL--------------IHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD-----DKLIR 481 (1131)
Q Consensus 422 ~~las~~~d~~--------------i~vwd~~~~~~~-~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~-----d~~i~ 481 (1131)
+.|+.++.++. |.+|++.++... ........|...+..+.|||||+. |+..+. ...|+
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVH 297 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEE
Confidence 99998877654 889998776521 112222234446899999999994 444443 34899
Q ss_pred EEe-CCCc-e-eEEecCCccCeEEEeecccCCccEEEEEec----CCeEEEEeCCCC--ceeEEecCCCceEEEEEEccC
Q 001178 482 VWD-LSGR-K-LFQFEGHEAPVYSVCPHQKENIHFIFSTAV----DGKIKAWLYDNV--GSRVDYDAPGLWCTTMLYSAD 552 (1131)
Q Consensus 482 iwd-~~~~-~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~ 552 (1131)
+|| .++. . ...+..+...+....+ +++..|+..+. ++.|.+||+++. .....+..+...+..+.++ +
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~ 373 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G 373 (741)
T ss_dssp EEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B
T ss_pred EEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C
Confidence 999 4441 3 5566655555554432 34566766665 345999998874 2233334444456677777 4
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE----cCCcEEEEEcCCCeE
Q 001178 553 GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDNVNM 622 (1131)
Q Consensus 553 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~ 622 (1131)
+..+++... ++...|++++. ++...+.+.......+..+.++|+++.++... ..++|++||+.+++.
T Consensus 374 ~~lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 374 NRLFASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TEEEEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CEEEEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 455555543 23345566665 35555555543344678889999987655332 357899999998873
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=4.4e-10 Score=123.29 Aligned_cols=238 Identities=13% Similarity=0.118 Sum_probs=161.7
Q ss_pred CCeeEEEecCCCCEEEE-------Ee-CCeEEEEECCCceeEEEEe----CCCCCeeEEEEeCCC-CcEEEEEeCCCcEE
Q 001178 834 DVVPCVALSKNDSYVMS-------AG-GGKVSLFNMMNFKVMTTFM----SPPPASTFLAFHPQD-NNIIAIGMEDSTIQ 900 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~-------~~-dg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~s~~~-~~~la~g~~dg~I~ 900 (1131)
....+++|+++|+++++ .. ++.|.+||..+++...... ++...+.++++++ + ++++++.. .+.|.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADM-RLGLL 95 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEET-TTEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEEC-CCCEE
Confidence 45678999999988887 33 7899999988877643322 1346789999999 6 77665444 44788
Q ss_pred EEEeecceeEEe-ecc----cccCeeEEEEccCCCEEEEEeCC---------------CcEEEEEcCCCceeeeeeeecC
Q 001178 901 IYNVRVDEVKTK-LKG----HQKHITGLAFSTNLNILVSSGSD---------------AQLIFWNTDTWEKRKSIAIQLP 960 (1131)
Q Consensus 901 iwd~~~~~~~~~-~~~----h~~~V~~l~~s~dg~~l~s~~~D---------------g~v~lwd~~~~~~~~~~~~~~~ 960 (1131)
+||.. ++.... ... +...+.+++++++|+++++...+ +.|..|+.. ++.... ...
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~--~~~- 170 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV--DTA- 170 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE--EEE-
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe--ccC-
Confidence 99987 665433 221 12458899999999988887665 567777765 332211 110
Q ss_pred CCCCCCCceEEEEc----CCCcEEEEE--eCCeEEEEeCC-Ccccc--eeeecCCCCC-CCeEEEEEccCCCEEEEEecC
Q 001178 961 AGKLPVGETRVQFH----SDQVRLLVN--HETQLAIYDGS-KMECI--RQWVPQDVLS-SPISSAAYSCNSQLIYATFTD 1030 (1131)
Q Consensus 961 ~~~~~~~v~~v~~s----~d~~~l~~~--~d~~i~vwd~~-~~~~~--~~~~~~~~~~-~~v~~i~~s~dg~~l~s~~~d 1030 (1131)
......++++ |+++.|.++ .++.|.+|+.. +++.. ..+.....+. ..+..++++++|+++++...+
T Consensus 171 ----~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 171 ----FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp ----ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred ----CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 0345788999 999766654 36889999976 34321 1111111112 568899999999988888788
Q ss_pred CcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCC-eEEEEecCCcEEEEecCC
Q 001178 1031 GSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPN-QLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1031 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~-~l~s~~~Dg~v~iW~~~~ 1095 (1131)
+.|.+||..+++....+..+. ..+..++|+| +++ ++++...++.|..|++..
T Consensus 247 ~~i~~~d~~~g~~~~~~~~~~------------~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIRCPF------------EKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TEEEEECTTCBSCSEEEECSS------------SCEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred CEEEEEcCCCCcEeEEEeCCC------------CCceeEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence 999999998787666554221 2345688877 556 556666678999999864
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.35 E-value=3.3e-10 Score=126.40 Aligned_cols=296 Identities=7% Similarity=-0.059 Sum_probs=191.2
Q ss_pred cCCccEEEEEec-C----CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec------CCCCceEEEEeCCC
Q 001178 508 KENIHFIFSTAV-D----GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNESE 576 (1131)
Q Consensus 508 ~~~~~~l~s~s~-d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~~~~~~i~iwd~~~ 576 (1131)
.++++.++.... + +.|.++|..+.+....+.....+ .+.++|||++++++... +..++.|.++|..+
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 345555655544 2 79999999999888877766555 89999999999887631 01256899999999
Q ss_pred CeeeEEEecc--c----CCceEEEEEeCCCCEEEEEEc--CCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCC-CEE
Q 001178 577 GALKRTYIGF--R----KKSAGVVQFDTTRNRILAAGE--DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG-NLL 647 (1131)
Q Consensus 577 ~~~~~~~~~~--~----~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~-~~l 647 (1131)
++.+..+.-. . ......+.|+|||++++++.. ++.|.+.|+.+++.+..+...+ +....|++ +.+
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g------~~~~~p~g~~~~ 232 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD------CYHIFPASPTVF 232 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------EEEEEEEETTEE
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC------ceeeccCCCcEE
Confidence 9998877532 0 112345889999999999874 5889999999999998887532 12333433 556
Q ss_pred EEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccC
Q 001178 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1131)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 727 (1131)
++.+.||.+.+.+..++. ......
T Consensus 233 v~~~~dG~~~~V~~~~~~-v~~~~~------------------------------------------------------- 256 (426)
T 3c75_H 233 YMNCRDGSLARVDFADGE-TKVTNT------------------------------------------------------- 256 (426)
T ss_dssp EEEETTSSEEEEECCTTC-CEEEEC-------------------------------------------------------
T ss_pred EEEcCCCCEEEEECCCCc-EEEEee-------------------------------------------------------
Confidence 667778888877763331 110000
Q ss_pred CCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCcc
Q 001178 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1131)
Q Consensus 728 ~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1131)
..++... ......+.+++++..++.....+.+.+.|+.......
T Consensus 257 --------------~~~~v~~------------------~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v---- 300 (426)
T 3c75_H 257 --------------EVFHTED------------------ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF---- 300 (426)
T ss_dssp --------------CCCSCTT------------------SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE----
T ss_pred --------------eeeccCC------------------CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE----
Confidence 0000000 0001123566777777666667777777764321100
Q ss_pred ceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-----------CCeEEEEECCCceeEEEEeCCCCC
Q 001178 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-----------GGKVSLFNMMNFKVMTTFMSPPPA 876 (1131)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~ 876 (1131)
..-|........... ........+++++|++.+.+.. ++.|.++|+.+++.+.++... ..
T Consensus 301 -----~~~~~~~~~~~i~~g---~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~ 371 (426)
T 3c75_H 301 -----RAPIEALTEAERADD---WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HE 371 (426)
T ss_dssp -----CCCEESSCTTTGGGT---EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EE
T ss_pred -----eeeeeeccccccccc---cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CC
Confidence 001111110000000 0111222468999999877764 247999999999999998743 25
Q ss_pred eeEEEEeCCCCc-EEEEEe-CCCcEEEEEeecceeEEee
Q 001178 877 STFLAFHPQDNN-IIAIGM-EDSTIQIYNVRVDEVKTKL 913 (1131)
Q Consensus 877 i~~l~~s~~~~~-~la~g~-~dg~I~iwd~~~~~~~~~~ 913 (1131)
...++|+| |++ ++++.. .++.|.++|+.+++.+..+
T Consensus 372 P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 372 IDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 88999999 777 777777 5899999999999998886
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=3e-10 Score=124.56 Aligned_cols=248 Identities=13% Similarity=0.073 Sum_probs=163.6
Q ss_pred CCCcEEEEEEecCCCcEEEE-------EcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 346 QGSSVVSMDFHPFHHTLLVV-------GCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llas-------g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
.-....+++|+++|+ ++++ +..++.|.+||..+++.... . . ....++...+.+++++
T Consensus 16 ~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~---~---------~~~~~~~~~~~~i~~~ 79 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C---K---------PEVNGYGGIPAGCQCD 79 (314)
T ss_dssp CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E---C---------CEETTEECCEEEEEEC
T ss_pred cCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E---e---------cccCCCCCCCceEEEe
Confidence 345678999999997 6666 46678999999887765320 0 0 0011344679999999
Q ss_pred CC-CCEEEEEeCCCeEEEEEecCCCccceeeee-ec-CcCCeeEEEEecCCCceEEEEEcCC---------------CcE
Q 001178 419 PD-GNFIGVAFTKHLIHLYTYQGSNDLCQSLEI-DA-HVGGVNDLAFSYPNKQLCIVTCGDD---------------KLI 480 (1131)
Q Consensus 419 pd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~-~~-h~~~V~~l~~s~d~~~~~l~s~s~d---------------~~i 480 (1131)
++ |+++++.. .+.|.+||.+ ++........ .+ +...+.++++.++|+ ++++...+ +.|
T Consensus 80 ~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 80 RDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred cCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeE
Confidence 99 76555544 4479999988 5532110111 11 224589999999998 56666544 567
Q ss_pred EEEeCCCceeEEecCCccCeEEEeec--ccCCccEEEE-EecCCeEEEEeCC-CCce-----eEEecCCC-ceEEEEEEc
Q 001178 481 RVWDLSGRKLFQFEGHEAPVYSVCPH--QKENIHFIFS-TAVDGKIKAWLYD-NVGS-----RVDYDAPG-LWCTTMLYS 550 (1131)
Q Consensus 481 ~iwd~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l~s-~s~dg~i~~wd~~-~~~~-----~~~~~~~~-~~v~~~~~s 550 (1131)
..||..++... +..+......++++ .+++++.++. ...++.|.+|+++ .+.. ...+..+. ..+..++++
T Consensus 156 ~~~~~~g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 156 YCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EEECTTSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EEECCCCCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 77775555433 33334456777775 1155555544 4568999999976 3321 11222232 567889999
Q ss_pred cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEE-EcCCcEEEEEcCC
Q 001178 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDN 619 (1131)
Q Consensus 551 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~ 619 (1131)
++|+..++... ++.|.+||..+++.+..+..+. ..+.+++|+++++.|+++ ..++.|..|++..
T Consensus 235 ~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~-~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 235 EDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF-EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS-SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC-CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99988777653 6789999998788777776543 368889999999966555 4567899998864
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.34 E-value=3.9e-09 Score=114.72 Aligned_cols=240 Identities=11% Similarity=0.019 Sum_probs=167.2
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCC
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~ 486 (1131)
.....+.+++++++|+.+++...++.|.+||.. ++.. . ..+..+...+.++++.+++. ++++...++.|..||..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-E-FEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLSKK 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-E-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-E-EECCCCCCcceeEEECCCCC--EEEEecCCCeEEEECCC
Confidence 345678999999999988877778999999987 4422 1 22334446799999999998 67777778899999955
Q ss_pred CceeE-EecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee-EEecCCCceEEEEEEccCCCEEEEEeecCC
Q 001178 487 GRKLF-QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSADGSRLFSCGTSKE 564 (1131)
Q Consensus 487 ~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 564 (1131)
++... .+......+.++++. +++.++++...++.|..|+.+ +... .........+..+++.++|+..++...
T Consensus 92 g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~--- 165 (300)
T 2qc5_A 92 GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ--- 165 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT---
T ss_pred CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC---
Confidence 65532 222234668888875 456777777668899999987 3333 223334457899999999996655532
Q ss_pred CCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCC
Q 001178 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~ 644 (1131)
.+.|..++. +++............+..+++++++..+++....+.|.+|+. +++.... ........+.+++++++|
T Consensus 166 -~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g 241 (300)
T 2qc5_A 166 -NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPHAITAGKNS 241 (300)
T ss_dssp -TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTT
T ss_pred -CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCC
Confidence 568999998 565543222122335778999999876666666778999998 4544332 222223367899999999
Q ss_pred CEEEEEECCCcEEEEec
Q 001178 645 NLLVVTTADQGIKILAN 661 (1131)
Q Consensus 645 ~~l~~~~~dg~i~iw~~ 661 (1131)
++.++...++.|..|+.
T Consensus 242 ~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 242 EIWFTEWGANQIGRITN 258 (300)
T ss_dssp CEEEEETTTTEEEEECT
T ss_pred CEEEeccCCCeEEEECC
Confidence 86666656788888876
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.31 E-value=1.8e-09 Score=122.30 Aligned_cols=253 Identities=10% Similarity=0.021 Sum_probs=165.9
Q ss_pred CCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC--cEEEEEeeccee
Q 001178 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS--TIQIYNVRVDEV 909 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg--~I~iwd~~~~~~ 909 (1131)
-.....++++++|+++++.. ++.|++||..++......... .... ++|++ +++.|+++..++ .|.+|+..++..
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCce
Confidence 34578999999999666665 589999999988777665543 2233 99999 788888887766 788888776544
Q ss_pred EEee----cccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCC-ceEEEEcCCCcEEEEEe
Q 001178 910 KTKL----KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVG-ETRVQFHSDQVRLLVNH 984 (1131)
Q Consensus 910 ~~~~----~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~-v~~v~~s~d~~~l~~~~ 984 (1131)
...+ ..+...+.+++++|++..|..+..++.|+.||..++......... ..+..... ...++|+|++..|.++.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCCCCccccEEEeCCCCEEEEEe
Confidence 3333 224566889999995555555777889999999876532211110 11111111 13999999655555543
Q ss_pred --CCeEEEEeCCCcccceeeecCC------------CCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecC
Q 001178 985 --ETQLAIYDGSKMECIRQWVPQD------------VLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 985 --d~~i~vwd~~~~~~~~~~~~~~------------~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
.+.|+.|+.... +..+.+.. ..-.....++|+++|+++++-. .++.|+.|++.++...... +
T Consensus 286 ~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~-g 362 (409)
T 3hrp_A 286 QNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA-G 362 (409)
T ss_dssp TTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE-E
T ss_pred CCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe-C
Confidence 678999987643 23332221 0013578999999999777766 7899999998888754333 2
Q ss_pred CccccCC---CCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEec
Q 001178 1050 SAYMSQA---SPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1050 ~~~~~~~---~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~ 1093 (1131)
....... .........+..+++.|+ +.++++-..+++|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 2100000 001112345778999995 778888888888888765
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.27 E-value=4.5e-10 Score=123.37 Aligned_cols=176 Identities=12% Similarity=0.084 Sum_probs=136.3
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEECCCce-----------eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEE
Q 001178 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMMNFK-----------VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIY 902 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iw 902 (1131)
..+..+++++...++++|+...+.+|++.+.. ...... +.. |++++| ++.+|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36889999999999999997788889976543 112233 445 999999 56788888 88999999
Q ss_pred EeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 903 NVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 903 d~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
|+.+.........|..++.++.+.+.. +++++.||.|.+||++.+.... . ...+++++|||+| ..+.
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~-------~~~Vs~v~WSpkG-~~vg 178 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---L-------AQNVTSFDVTNSQ-LAVL 178 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---E-------EESEEEEEECSSE-EEEE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---c-------cCCceEEEEcCCc-eEEE
Confidence 998776666677788889988887653 8889999999999999766432 1 1579999999999 4455
Q ss_pred EeCCeEEEEeCCCccc--ceeeec------CCCCCCCeEEEEEccCCCEEEEEe
Q 001178 983 NHETQLAIYDGSKMEC--IRQWVP------QDVLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 983 ~~d~~i~vwd~~~~~~--~~~~~~------~~~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
..||.+++|+...++. .+.+.. +..|...|.+++|.+++.++++=.
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 6799999999887775 444421 113478999999999999988744
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.26 E-value=2.9e-09 Score=115.38 Aligned_cols=229 Identities=7% Similarity=-0.023 Sum_probs=150.5
Q ss_pred CCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeE
Q 001178 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK 910 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~ 910 (1131)
..-..+..|++++..|...+ ++.|..||..+++.. .+. ....+.++++++ +++++++ . ++.|.+||..+++..
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEE
Confidence 34456889999766666555 689999999887653 333 346799999999 7776554 3 567999998887654
Q ss_pred Eeecc----cccCeeEEEEccCCCEEEEEeCC---------CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCC
Q 001178 911 TKLKG----HQKHITGLAFSTNLNILVSSGSD---------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1131)
Q Consensus 911 ~~~~~----h~~~V~~l~~s~dg~~l~s~~~D---------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 977 (1131)
..... ....+..++++|+|+++++...+ ..-.+|.+............. .....++|+||+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~------~~pngi~~spdg 160 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQV------DISNGLDWSLDH 160 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEE------SBEEEEEECTTS
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecc------ccccceEEcCCC
Confidence 33221 12457889999999987765322 234556555322211111110 345689999999
Q ss_pred cEEEEEe--CCeEEEEeC--CCcccc--eeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCc
Q 001178 978 VRLLVNH--ETQLAIYDG--SKMECI--RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 978 ~~l~~~~--d~~i~vwd~--~~~~~~--~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
+.|++.. ++.|.+|++ .++... +.+............++++++|++.++...++.|.+||.++|+.+..+....
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 9877654 688999987 455432 1222111113567899999999988887778889999999999888776432
Q ss_pred cccCCCCCCCCccccEEEEEc-CCCCCeEEEEec
Q 001178 1052 YMSQASPNSSQTVFPLVVTSH-PQEPNQLAVGLT 1084 (1131)
Q Consensus 1052 ~~~~~~~~~~~~v~~~~v~~~-p~~~~~l~s~~~ 1084 (1131)
..+.+++|. |+...++++...
T Consensus 241 ------------~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 241 ------------DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp ------------SBEEEEEEESGGGCEEEEEEBC
T ss_pred ------------CCceEEEEeCCCCCEEEEEcCC
Confidence 234578998 643344455443
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.25 E-value=3.1e-09 Score=120.21 Aligned_cols=239 Identities=10% Similarity=0.000 Sum_probs=159.7
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
.....++|+|+|+ |+++...++.|++||..+++... +... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~-------------------~~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTT-------------------VHPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEE-------------------EEET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEE-------------------eecc-CCCCc-eeEecCCCcEEEE
Confidence 4789999999997 78888878999999998876543 1112 22233 9999999999988
Q ss_pred eCCC--eEEEEEecCCCccceeeeeec-CcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEe-----cCCccC
Q 001178 428 FTKH--LIHLYTYQGSNDLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF-----EGHEAP 499 (1131)
Q Consensus 428 ~~d~--~i~vwd~~~~~~~~~~~~~~~-h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~-----~~h~~~ 499 (1131)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..+.....+ .++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 788888877653222111122 4567889999995553 44466688999999443333333 222222
Q ss_pred e--EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC---------------CceEEEEEEccCCCEEEEEeec
Q 001178 500 V--YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP---------------GLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 500 v--~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---------------~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
- ..++|++. ++.++++...++.|+.|+.+.. ...+.+. -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 28888763 3466667778899999987654 2222222 13478999999999665543
Q ss_pred CCCCceEEEEeCCCCeeeEEEeccc--------------CCceEEEEEeCCCCEEEEEEcCCcEEEEEc
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFR--------------KKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1131)
..++.|+.|+..++... .+.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 02789999998777643 343320 124677999999777777777788887765
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.25 E-value=7.6e-10 Score=135.36 Aligned_cols=250 Identities=12% Similarity=0.044 Sum_probs=161.9
Q ss_pred CCCcEEEEEEecCCCcEEEEEcC----CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCG----DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
|...+..++|||||++++.+-+. ..+|+|||+.+|+.+.. .+.+ .....++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------------------~~~~--~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------------------PLKD--VKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------------------EEEE--EESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------------------ccCC--ceeccEEEe-CC
Confidence 55678999999999965444332 35799999999986531 0111 112467899 99
Q ss_pred CEEEEEeCCC-------------eEEEEEecCCCcc-ceeeeeec-CcCCeeEEEEecCCCceEEEEEc---CCCcEEEE
Q 001178 422 NFIGVAFTKH-------------LIHLYTYQGSNDL-CQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCG---DDKLIRVW 483 (1131)
Q Consensus 422 ~~las~~~d~-------------~i~vwd~~~~~~~-~~~~~~~~-h~~~V~~l~~s~d~~~~~l~s~s---~d~~i~iw 483 (1131)
+.|+.++.+. .|.+|++.++..- ........ |...+.++.|+|||+.+ +++.+ .++.|++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence 9999998774 3999998876431 12222233 45567899999999963 33333 23589999
Q ss_pred eC-CCc-eeEEecCCccCeEEEeecccCCccEEEEEecC---CeEEEEeCCCCce--eEEecCCCceEEEEEEccCCCEE
Q 001178 484 DL-SGR-KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 484 d~-~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l 556 (1131)
|. ++. ....+..+....... +.+. ++.+++....+ +.|..+++.+... ...+..+...+. .|+++++.|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 94 332 456666666655554 3332 23444454443 6799999987654 234444544444 899999998
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC----CcEEEEEcCCCeEE
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED----NQIKFWDMDNVNML 623 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~ 623 (1131)
+.... .++...|++|++..+ ..+.+.......+..+.++++++.++....+ +.|+.||+.+++..
T Consensus 341 v~~~~-~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 341 FAEYM-VDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEE-ETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEE-ECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 88764 233458999998754 4444443233356667778888776665544 88999999887643
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.24 E-value=2.5e-09 Score=115.82 Aligned_cols=228 Identities=11% Similarity=0.080 Sum_probs=153.7
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 426 (1131)
..--.+..|+|++..++++...++.|..||..+++... + .....+.+++++|+|+++++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~------~---------------~~~~~~~~i~~~~dG~l~v~ 70 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR------V---------------TMDAPVSSVALRQSGGYVAT 70 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE------E---------------ECSSCEEEEEEBTTSSEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE------E---------------eCCCceEEEEECCCCCEEEE
Confidence 34566889999777788888889999999998875421 1 12457999999999996554
Q ss_pred EeCCCeEEEEEecCCCccceeeeeec--CcCCeeEEEEecCCCceEEEEE-cC----------CCcEEEEeCCCceeEEe
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLEIDA--HVGGVNDLAFSYPNKQLCIVTC-GD----------DKLIRVWDLSGRKLFQF 493 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~--h~~~V~~l~~s~d~~~~~l~s~-s~----------d~~i~iwd~~~~~~~~~ 493 (1131)
. ++.|.+||.++++.. ....... ....+.+++++|+|+ ++++. +. .+.|..+|..++... +
T Consensus 71 ~--~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~ 144 (297)
T 3g4e_A 71 I--GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y 144 (297)
T ss_dssp E--TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E
T ss_pred E--CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE-E
Confidence 3 567999999876532 2211111 123588999999998 45543 22 123444444454433 3
Q ss_pred cCCccCeEEEeecccCCccEE-EEEecCCeEEEEeCC--CCcee-----EEecCCCceEEEEEEccCCCEEEEEeecCCC
Q 001178 494 EGHEAPVYSVCPHQKENIHFI-FSTAVDGKIKAWLYD--NVGSR-----VDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~~wd~~--~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
..+......++|++ +++.+ ++.+.++.|..|+++ ++... ..+.........++++++|++.++...
T Consensus 145 ~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~---- 218 (297)
T 3g4e_A 145 FDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN---- 218 (297)
T ss_dssp EEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----
T ss_pred eeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----
Confidence 33444567888865 45555 556678899999874 33211 122222346789999999987766643
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEe-CCCCEEEEEEc
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFD-TTRNRILAAGE 608 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 608 (1131)
.+.|..||..+++.+..+.... ..+++++|. |+++.|++++.
T Consensus 219 ~~~v~~~d~~tG~~~~~i~~p~-~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 GGRVIRLDPVTGKRLQTVKLPV-DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTEEEEECTTTCCEEEEEECSS-SBEEEEEEESGGGCEEEEEEB
T ss_pred CCEEEEEcCCCceEEEEEECCC-CCceEEEEeCCCCCEEEEEcC
Confidence 6789999999899988887653 368899998 88887776654
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.23 E-value=4.1e-10 Score=124.87 Aligned_cols=269 Identities=11% Similarity=0.010 Sum_probs=170.4
Q ss_pred CcEEEEEEecCCCcEEEEEc--CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
..+..++++|+|+ ++++.. .++.++||.+.+++.. ++.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6899999999998 566653 2343667766544432 111111 01235667899999999998776
Q ss_pred EEeC-----CCeEEEEEecCCCccceeeeee----cCcCCeeEEEEecCCCceEEEEEc---CCCcEEEEe-CCCceeEE
Q 001178 426 VAFT-----KHLIHLYTYQGSNDLCQSLEID----AHVGGVNDLAFSYPNKQLCIVTCG---DDKLIRVWD-LSGRKLFQ 492 (1131)
Q Consensus 426 s~~~-----d~~i~vwd~~~~~~~~~~~~~~----~h~~~V~~l~~s~d~~~~~l~s~s---~d~~i~iwd-~~~~~~~~ 492 (1131)
+-.. ++.|.+||+.+++.+... .+. .+...+..+++++++.. ++++.. .++.|.+|| .+++....
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999987644322 221 22345789999987653 556655 688999999 66776666
Q ss_pred ecCCccCeE-EEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 493 FEGHEAPVY-SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 493 ~~~h~~~v~-~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
+.+|..... ...+ ..++..+.+.+.++.++.|. ..+..++++|||+.|+++... ...++.
T Consensus 161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccce--eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 655432111 0122 12445666777788876663 136789999999999887641 335666
Q ss_pred EeCC---CCe-----eeE--EEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc
Q 001178 572 WNES---EGA-----LKR--TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1131)
Q Consensus 572 wd~~---~~~-----~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1131)
++.. .+. ... ...++.. ....++++++|..+++...++.|.+||..+++........ .......++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 6531 111 000 1112111 3456899999998888888999999998667644333322 22356889999
Q ss_pred CCCCEEEEEECC
Q 001178 642 KEGNLLVVTTAD 653 (1131)
Q Consensus 642 p~~~~l~~~~~d 653 (1131)
+++.++++....
T Consensus 300 ~~g~l~v~~~~~ 311 (343)
T 2qe8_A 300 SDGYLYFDCNQL 311 (343)
T ss_dssp TTSCEEEEECCG
T ss_pred CCCcEEEEeCcc
Confidence 988877766544
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.22 E-value=6.5e-10 Score=122.04 Aligned_cols=197 Identities=9% Similarity=0.007 Sum_probs=130.1
Q ss_pred eEEEecCCCCEEEEEe---CCeEEE--EECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec-----
Q 001178 837 PCVALSKNDSYVMSAG---GGKVSL--FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV----- 906 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~---dg~i~v--wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~----- 906 (1131)
..++++|||++++++. ++.|.+ +|+.+ +.++..... ..+.|++.+.+++.+.||.+.+.++.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 4688999999888876 356888 88877 455543221 223443555666777889988888886
Q ss_pred ceeEE----eecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC------CCCCCCCceEEEEcCC
Q 001178 907 DEVKT----KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP------AGKLPVGETRVQFHSD 976 (1131)
Q Consensus 907 ~~~~~----~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~------~~~~~~~v~~v~~s~d 976 (1131)
++... .+.-...+. + ++++..++..+. +.|.+.|+.+........+... .+..+.....++++||
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d 274 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence 44331 111122343 3 666676666666 8999999876432111111110 0111122233789999
Q ss_pred CcEEEEE-e-C--------CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCE-EEEEe-cCCcEEEEECCCCcee
Q 001178 977 QVRLLVN-H-E--------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQL-IYATF-TDGSIGVFDADSLRLR 1044 (1131)
Q Consensus 977 ~~~l~~~-~-d--------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~-l~s~~-~dg~i~vwd~~~~~~~ 1044 (1131)
++.++++ . . +.+.++|+.+++.+..+... .....++|+|||++ +++.. .++.|.|+|+.+++.+
T Consensus 275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 9988874 2 2 36779999999999888765 36889999999984 55555 4899999999999999
Q ss_pred eEecC
Q 001178 1045 CRIAP 1049 (1131)
Q Consensus 1045 ~~~~~ 1049 (1131)
.++..
T Consensus 351 ~~I~v 355 (368)
T 1mda_H 351 SSVEL 355 (368)
T ss_dssp EECCC
T ss_pred EEEEC
Confidence 88874
No 221
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.22 E-value=1.8e-05 Score=94.01 Aligned_cols=532 Identities=11% Similarity=0.001 Sum_probs=284.0
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecC-CccCeE
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG-HEAPVY 501 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-h~~~v~ 501 (1131)
+|+.+ ....|+..++++.... ....+. .-..+..++|.+.+.. ++++-..++.|+.++..|..+..+.. ......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~-~~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNN-VAIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCE-EECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcc-eEEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 4567999999865421 111222 2346889999997764 56666678899999866654443332 224566
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeE
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 581 (1131)
.+++.+. .+++.++-...+.|.+.+++.................+++.|....|+.+.. ...+.|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 7777543 3355566667789999998765544433344446789999997667766542 125678888876443333
Q ss_pred EEecccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 582 TYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 582 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
... .......++++++++.|+.+. ..+.|..+++..... ..+... ......+++.. +.++++-...+.|...|
T Consensus 161 l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 332 233577899999877777665 467899999876544 233222 12345777765 34444444577888888
Q ss_pred cCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCC
Q 001178 661 NADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDK 740 (1131)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~ 740 (1131)
..++.. ...+...... .. .+..+.+. +.........- .+.
T Consensus 235 k~tg~~-~~~l~~~~~~----------p~--~i~v~~~~--------~q~~~n~C~~~-------------------ng~ 274 (628)
T 4a0p_A 235 KTSGQN-RTIIQGHLDY----------VM--DILVFHSS--------RQSGWNECASS-------------------NGH 274 (628)
T ss_dssp TTTCCS-CEEEECSCCS----------CC--EEEEECGG--------GSCCCCTTTTT-------------------GGG
T ss_pred CCCCCc-eEEEecCCCC----------cc--eeeeeeec--------ccccceEeccC-------------------CCC
Confidence 666522 1111111000 00 00111111 00000000000 000
Q ss_pred CcceeeecccCCceeEEEEcCCC-CCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCC
Q 001178 741 TKPWELTEIVDPLQCRVVAMPES-TDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPS 819 (1131)
Q Consensus 741 v~~w~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 819 (1131)
....-+........| ..+.. .-......+. +....|+.+ ....|+-..+....
T Consensus 275 C~~~C~~~~~~~~~C---~C~~g~~l~~d~~~C~---~~~~~Ll~s-~~~~i~~i~l~~~~------------------- 328 (628)
T 4a0p_A 275 CSHLCLAVPVGGFVC---GCPAHYSLNADNRTCS---APTTFLLFS-QKSAINRMVIDEQQ------------------- 328 (628)
T ss_dssp CSSEEEEETTTEEEE---ECSTTCEECTTSSCEE---CCSSEEEEE-ETTEEEEECCCTTC-------------------
T ss_pred cchhhhcCCCCCeeE---EcCCCcEecccCCcCc---cccceeeee-ccceEEEEeccccc-------------------
Confidence 000000000000000 00000 0000111111 112223222 22233322221100
Q ss_pred CCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeC------CCCCeeEEEEeCCCCcEEE
Q 001178 820 NGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS------PPPASTFLAFHPQDNNIIA 891 (1131)
Q Consensus 820 ~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~~~la 891 (1131)
..-.. ++-..-..+..++|.+....|..+. .+.|+.++.........+.. ....+..+++...++++..
T Consensus 329 -~~~~~--l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~ 405 (628)
T 4a0p_A 329 -SPDII--LPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYW 405 (628)
T ss_dssp -CCCEE--CCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEE
T ss_pred -CceEE--EEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEE
Confidence 00000 1111234577899999888888776 57898888865443333322 2346889999984456666
Q ss_pred EEeCCCcEEEEEeecceeEEee-cccccCeeEEEEcc-CCCEEEEEeCCC--cEEEEEcCCCceeeeeeeecCCCCCCCC
Q 001178 892 IGMEDSTIQIYNVRVDEVKTKL-KGHQKHITGLAFST-NLNILVSSGSDA--QLIFWNTDTWEKRKSIAIQLPAGKLPVG 967 (1131)
Q Consensus 892 ~g~~dg~I~iwd~~~~~~~~~~-~~h~~~V~~l~~s~-dg~~l~s~~~Dg--~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 967 (1131)
+-+..+.|.+.+++ |+....+ ........+|++.| .|.++.+-.... .|...+++..... .. .. . .-..
T Consensus 406 td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~-~l-~~---~-~l~~ 478 (628)
T 4a0p_A 406 TCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE-VL-FF---S-GLSK 478 (628)
T ss_dssp EETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE-EE-EC---S-SCSC
T ss_pred EcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE-EE-Ee---c-cCCC
Confidence 77778889999976 4433333 33456689999999 555555533332 5666666653221 11 11 1 1145
Q ss_pred ceEEEEcCCCcEEEEEe--CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCcee
Q 001178 968 ETRVQFHSDQVRLLVNH--ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLR 1044 (1131)
Q Consensus 968 v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~ 1044 (1131)
...+++++++..|..++ .+.|..++++. ...+.+... ......++++.. + .|+.+. ..+.|...|..+|+..
T Consensus 479 P~gla~D~~~~~LYw~D~~~~~I~~~~~dG-~~r~~~~~~--~~~~P~glav~~-~-~ly~tD~~~~~i~~~~k~~G~~~ 553 (628)
T 4a0p_A 479 PIALALDSRLGKLFWADSDLRRIESSDLSG-ANRIVLEDS--NILQPVGLTVFE-N-WLYWIDKQQQMIEKIDMTGREGR 553 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECS--SCSCEEEEEEET-T-EEEEEETTTTEEEEEETTSSSCC
T ss_pred ccEEEEeCCCCEEEEEeCCCCEEEEEeCCC-CceEEEEcC--CCCCcEEEEEEC-C-EEEEEECCCCeEEEEECcCCCCc
Confidence 68899999988888765 47899999864 334444321 134567888754 3 455555 5578888888877755
Q ss_pred eEec
Q 001178 1045 CRIA 1048 (1131)
Q Consensus 1045 ~~~~ 1048 (1131)
..+.
T Consensus 554 ~~i~ 557 (628)
T 4a0p_A 554 TKVQ 557 (628)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5444
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=8.4e-09 Score=113.27 Aligned_cols=225 Identities=12% Similarity=0.006 Sum_probs=149.7
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 428 (1131)
-..+.+|+|+++.+++++..++.|..||..+++... + .....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 456789999877788888888999999998775421 1 123579999999999987765
Q ss_pred CCCeEEEEEecCCCccceeeeeec-C-cCCeeEEEEecCCCceEEEEEcC------CCcEEEEeCCCceeEEecCCccCe
Q 001178 429 TKHLIHLYTYQGSNDLCQSLEIDA-H-VGGVNDLAFSYPNKQLCIVTCGD------DKLIRVWDLSGRKLFQFEGHEAPV 500 (1131)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~-h-~~~V~~l~~s~d~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~h~~~v 500 (1131)
.+ .|.+||..+++.. ....... + ...+.+++++|+|+ ++++... .+.|..+| +++ +..+..+....
T Consensus 108 ~~-gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~-~g~-~~~~~~~~~~~ 181 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA-KGK-VTKLFADISIP 181 (326)
T ss_dssp TT-EEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE-TTE-EEEEEEEESSE
T ss_pred CC-CEEEEECCCCcEE-EEeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe-CCc-EEEeeCCCccc
Confidence 33 4999999887632 1111111 1 23589999999998 4554432 24555555 444 33333333456
Q ss_pred EEEeecccCCccEEE-EEecCCeEEEEeCC--CC-ce-----eEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 501 YSVCPHQKENIHFIF-STAVDGKIKAWLYD--NV-GS-----RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~-s~s~dg~i~~wd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
..++|++ +++.++ +.+.++.|.+|+++ ++ .. ...+.........++++++|++.++... .+.|.+
T Consensus 182 ~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~~ 255 (326)
T 2ghs_A 182 NSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDR 255 (326)
T ss_dssp EEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEE
T ss_pred CCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEEE
Confidence 7888854 555554 44567899999986 43 21 1122223446788999999987766542 568999
Q ss_pred EeCCCCeeeEEEecccCCceEEEEEe-CCCCEEEEEEcC
Q 001178 572 WNESEGALKRTYIGFRKKSAGVVQFD-TTRNRILAAGED 609 (1131)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d 609 (1131)
||. +++.+..+.... ..+.+++|+ ++++.|++++..
T Consensus 256 ~d~-~g~~~~~i~~~~-~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPG-KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEECSC-SBEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEECCC-CCcEEEEEecCCCCEEEEEecC
Confidence 998 577777776543 368899998 888877665543
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.19 E-value=3.3e-09 Score=115.46 Aligned_cols=234 Identities=10% Similarity=0.031 Sum_probs=155.7
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.+.......+|+|+|+++++++..++.|..|+. +++.. .+..+...+..++++++|+++
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~--------------------~~~~~~~~~~gl~~d~dG~l~ 100 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD--------------------VLLDATAFTNGNAVDAQQRLV 100 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE--------------------EEEESCSCEEEEEECTTSCEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE--------------------EEeCCCCccceeeECCCCCEE
Confidence 355677899999999888899988999999998 44421 123345678999999999977
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecC-cCCeeEEEEecCCCceEEEE----EcC-------------CCcEEEEeC-
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAH-VGGVNDLAFSYPNKQLCIVT----CGD-------------DKLIRVWDL- 485 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~V~~l~~s~d~~~~~l~s----~s~-------------d~~i~iwd~- 485 (1131)
++...++.|.+|+.+ ++.........+. ...+.++++.++|+ +.+| |.. .+.|..||.
T Consensus 101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 766666889999986 4421111111111 23577899999998 6665 332 256777884
Q ss_pred CCceeEEecCCccCeEEEeecccCCccEEEEEecC------CeEEEEeCCCCce---eEEecCCCceEEEEEEccCCCEE
Q 001178 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD------GKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l 556 (1131)
+++.... . .......++|++ +++.|+.+... +.|.+|++..... .............++++++|++.
T Consensus 178 ~g~~~~~-~-~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw 253 (305)
T 3dr2_A 178 GSPLQRM-A-DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW 253 (305)
T ss_dssp SCCCEEE-E-EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE
T ss_pred CCcEEEE-e-cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE
Confidence 5554333 2 445567888854 55667666554 7899999875431 11111122334578899999955
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 616 (1131)
++. .+.|.+|+. +++.+..+.... .+..++|+++++.|+.++.++ ++.++
T Consensus 254 v~~------~~gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 254 SSS------GTGVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp ECC------SSEEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred Eec------CCcEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 443 234999997 577777776543 477889999998888887754 44433
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.19 E-value=9.3e-10 Score=122.01 Aligned_cols=271 Identities=9% Similarity=0.029 Sum_probs=175.0
Q ss_pred cceEEEEeecCCceEEEeee--cceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 768 SKVARLLYTNSGIGILALWS--NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
.....++++++|+.+++... ++.+++|.+.. +... ...-|.. ....+-..+..++++++|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~---~~p~~~~---------~~~~~~~~p~gv~~d~~g 78 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLI---PFPPQSG---------NAIITFDTVLGIKSDGNG 78 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEE---ESCCCCS---------SCCCCCSCEEEEEECSSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCee---cCCCccc---------CcccceeEeeEEEEcCCC
Confidence 46788999999998777532 34367776641 1110 0000000 011356788999999999
Q ss_pred CEEEEEe------CCeEEEEECCCceeEEEEeCC------CCCeeEEEEeCCCCcEEEEEe---CCCcEEEEEeecceeE
Q 001178 846 SYVMSAG------GGKVSLFNMMNFKVMTTFMSP------PPASTFLAFHPQDNNIIAIGM---EDSTIQIYNVRVDEVK 910 (1131)
Q Consensus 846 ~~la~~~------dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~~la~g~---~dg~I~iwd~~~~~~~ 910 (1131)
++.++-. ++.|.+||+.+++.+..+..+ ...+..++++++++.++++.. .++.|.+||+.+++..
T Consensus 79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~ 158 (343)
T 2qe8_A 79 IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA 158 (343)
T ss_dssp EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE
T ss_pred cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE
Confidence 8666543 378999999999987776532 235689999984555556655 6789999999988877
Q ss_pred EeecccccCee-EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-C-Ce
Q 001178 911 TKLKGHQKHIT-GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-E-TQ 987 (1131)
Q Consensus 911 ~~~~~h~~~V~-~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d-~~ 987 (1131)
..+.+|..... ...++++|..+.+.+.|+.++.|. ..+..++|+|||+.|+++. . ..
T Consensus 159 r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------------~~~~gia~s~dg~~ly~~~~~~~~ 218 (343)
T 2qe8_A 159 RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------------LGVNGIVLDAENEWLYLSPMHSTS 218 (343)
T ss_dssp EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------------CCEEEEEECTTSCEEEEEESSCSE
T ss_pred EEecCCCcccccccceeECCEEEEeccCCCceecee--------------------cccceeEeccCCCEEEEEeCCCCe
Confidence 77766533211 145666787888888888876653 2345799999999888764 2 34
Q ss_pred EEEEeCCC---c-----cccee--eecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCC
Q 001178 988 LAIYDGSK---M-----ECIRQ--WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS 1057 (1131)
Q Consensus 988 i~vwd~~~---~-----~~~~~--~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1057 (1131)
++.++... + +.... ..++ ......++++++|.++++...++.|.+||..+++........
T Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~~g~---~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~------- 288 (343)
T 2qe8_A 219 MYRIKSADLSNLQLTDAELGSKIERYSE---KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE------- 288 (343)
T ss_dssp EEEEEHHHHTCTTCCHHHHHTTCEEEEE---CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-------
T ss_pred EEEEEHHHhcCCCCChhhhhcceEeccc---CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-------
Confidence 55554321 1 11111 1112 235567899999999988888999999998566543222211
Q ss_pred CCCCCccccEEEEEcCCCCCeEEEEecCCcEEEE
Q 001178 1058 PNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVI 1091 (1131)
Q Consensus 1058 ~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW 1091 (1131)
....+..++|.+ ++.++++.+..+.+.+|
T Consensus 289 ----~~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 289 ----KLSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ----GGSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred ----ceecCCeeEECC-CCcEEEEeCcccccccc
Confidence 123466789888 56788887765554333
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.17 E-value=1.1e-09 Score=133.97 Aligned_cols=244 Identities=12% Similarity=0.148 Sum_probs=157.3
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-----CCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC--
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAF-----TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK-- 478 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~-----~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~-- 478 (1131)
.+|...+..++|||||++||.+. .+.+|++||+.+++.+.. .+.+ .....++|+ ||+ .|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~ 197 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPD 197 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCcc
Confidence 35667899999999999998643 235799999999875431 1211 113578999 999 466665553
Q ss_pred -----------cEEEEe-CCCc----eeEEecC-CccCeEEEeecccCCccEEEEEec----CCeEEEEeCCCCc-eeEE
Q 001178 479 -----------LIRVWD-LSGR----KLFQFEG-HEAPVYSVCPHQKENIHFIFSTAV----DGKIKAWLYDNVG-SRVD 536 (1131)
Q Consensus 479 -----------~i~iwd-~~~~----~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~~wd~~~~~-~~~~ 536 (1131)
.|++|+ -++. .+..... |......+.++ +++++|+.... ++.|+++|+++.. ....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT--EDDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC--TTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc--CCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 499999 3332 2333333 44556777774 56676654432 3589999998764 3344
Q ss_pred ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee--eEEEecccCCceEEEEEeCCCCEEEEEEcCC---c
Q 001178 537 YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL--KRTYIGFRKKSAGVVQFDTTRNRILAAGEDN---Q 611 (1131)
Q Consensus 537 ~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~ 611 (1131)
+..+....... ++++|..|+..+......+.|..+++.++.. .+.+..+....+ .|++++++|+....++ .
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeE
Confidence 44444444444 6778887777654322357899999987654 345555554333 7889998887766543 6
Q ss_pred EEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC----CcEEEEecCCC
Q 001178 612 IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD----QGIKILANADG 664 (1131)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d----g~i~iw~~~~~ 664 (1131)
|++|++..+. ...+.... ...+..+.+++++..++....+ +.+..||+.++
T Consensus 352 l~~~d~~g~~-~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 352 VEQFDYEGKR-VREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEECTTSCE-EEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEECCCCe-eEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 8999987554 44444322 1245667778888777666544 78999988665
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.15 E-value=1.8e-08 Score=121.69 Aligned_cols=193 Identities=9% Similarity=0.103 Sum_probs=136.8
Q ss_pred CCeEEEEECCCceeEEEEeCCCCC--------------------------------eeEEEEeCCCCcEEEEEeCCC---
Q 001178 853 GGKVSLFNMMNFKVMTTFMSPPPA--------------------------------STFLAFHPQDNNIIAIGMEDS--- 897 (1131)
Q Consensus 853 dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~s~~~~~~la~g~~dg--- 897 (1131)
++.|+.||..+++.+.++...... ...++++| ++.++++++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 578888999998888776542211 13578888 677777777664
Q ss_pred ----------------cEEEEEeecceeEEeecc--cc-------cCeeEEEEccCC---CEEEEEeCCCcEEEEEcCCC
Q 001178 898 ----------------TIQIYNVRVDEVKTKLKG--HQ-------KHITGLAFSTNL---NILVSSGSDAQLIFWNTDTW 949 (1131)
Q Consensus 898 ----------------~I~iwd~~~~~~~~~~~~--h~-------~~V~~l~~s~dg---~~l~s~~~Dg~v~lwd~~~~ 949 (1131)
.|..+|..+|+.+-.++. |. ....-+....+| ..++.++.+|.|+++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 499999999998876553 31 122233444577 68999999999999999999
Q ss_pred ceeeeeeeecCC--------C--------------------CC-CCCceEEEEcCCCcEEEEEe----------------
Q 001178 950 EKRKSIAIQLPA--------G--------------------KL-PVGETRVQFHSDQVRLLVNH---------------- 984 (1131)
Q Consensus 950 ~~~~~~~~~~~~--------~--------------------~~-~~~v~~v~~s~d~~~l~~~~---------------- 984 (1131)
+.+......... + .. ...-..++|+|++.++++..
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 876543321000 0 00 00112578999988887742
Q ss_pred ----------------------------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001178 985 ----------------------------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVF 1036 (1131)
Q Consensus 985 ----------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vw 1036 (1131)
.+.|..||+.+++.+..+... .++.+..++.++.++++++.||.+++|
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~~~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----SPWNGGTLTTAGNVVFQGTADGRLVAY 503 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC----CCCcCcceEeCCCEEEEECCCCcEEEE
Confidence 167999999999988776543 345556677888899999999999999
Q ss_pred ECCCCceeeEecCC
Q 001178 1037 DADSLRLRCRIAPS 1050 (1131)
Q Consensus 1037 d~~~~~~~~~~~~~ 1050 (1131)
|..+|+.+..+...
T Consensus 504 D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 504 HAATGEKLWEAPTG 517 (677)
T ss_dssp ETTTCCEEEEEECS
T ss_pred ECCCCceeeeeeCC
Confidence 99999999988753
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.14 E-value=1.3e-08 Score=123.31 Aligned_cols=193 Identities=16% Similarity=0.189 Sum_probs=134.3
Q ss_pred CCeEEEEECCCceeEEEEeCCC-------------------------------CCeeEEEEeCCCCcEEEEEeCCCc---
Q 001178 853 GGKVSLFNMMNFKVMTTFMSPP-------------------------------PASTFLAFHPQDNNIIAIGMEDST--- 898 (1131)
Q Consensus 853 dg~i~vwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~~~~~la~g~~dg~--- 898 (1131)
+|.|..||..+|+.+-.+.... ..-..++++| +..++++++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWD 260 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccc
Confidence 5678888888888877765210 0112578898 6778888888764
Q ss_pred ----------------EEEEEeecceeEEeecc--cc-------cCeeEEEEccCCC---EEEEEeCCCcEEEEEcCCCc
Q 001178 899 ----------------IQIYNVRVDEVKTKLKG--HQ-------KHITGLAFSTNLN---ILVSSGSDAQLIFWNTDTWE 950 (1131)
Q Consensus 899 ----------------I~iwd~~~~~~~~~~~~--h~-------~~V~~l~~s~dg~---~l~s~~~Dg~v~lwd~~~~~ 950 (1131)
|..||.++|+.+-.++. |. .+..-.....+|+ .++.++.+|.++++|..+++
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 99999999998876653 22 1222223333665 78899999999999999998
Q ss_pred eeeeeeeec------------------------CCCC---------CCCCceEEEEcCCCcEEEEEe-------------
Q 001178 951 KRKSIAIQL------------------------PAGK---------LPVGETRVQFHSDQVRLLVNH------------- 984 (1131)
Q Consensus 951 ~~~~~~~~~------------------------~~~~---------~~~~v~~v~~s~d~~~l~~~~------------- 984 (1131)
.+....... .... -...-..++|+|+..++++..
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 753222110 0000 001122478999988777641
Q ss_pred ---------------------------------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001178 985 ---------------------------------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG 1031 (1131)
Q Consensus 985 ---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg 1031 (1131)
++.|+.||+.+++.+-.+..+ .++....++..+.++++++.||
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~gt~dg 496 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV----TIFNGGTLSTAGNLVFEGSADG 496 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTS
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC----CCccCccceECCCEEEEECCCC
Confidence 367999999999988777654 2334446677888999999999
Q ss_pred cEEEEECCCCceeeEecCC
Q 001178 1032 SIGVFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 1032 ~i~vwd~~~~~~~~~~~~~ 1050 (1131)
.++.||.++|+.+.++...
T Consensus 497 ~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 497 RVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp EEEEEETTTCCEEEEEECS
T ss_pred cEEEEECCCCccceeeeCC
Confidence 9999999999999888743
No 228
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.13 E-value=1.4e-08 Score=110.55 Aligned_cols=233 Identities=12% Similarity=0.083 Sum_probs=152.9
Q ss_pred CCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeC
Q 001178 407 DSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL 485 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 485 (1131)
.........+|+|+|+ ++++...++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+||.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence 4455678899999999 5666667889999988 443 22 3445667799999999998 6666666788999996
Q ss_pred CCceeEEecCC-----ccCeEEEeecccCCccEEEE----Eec-------------CCeEEEEeCCCCceeEEecCCCce
Q 001178 486 SGRKLFQFEGH-----EAPVYSVCPHQKENIHFIFS----TAV-------------DGKIKAWLYDNVGSRVDYDAPGLW 543 (1131)
Q Consensus 486 ~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s----~s~-------------dg~i~~wd~~~~~~~~~~~~~~~~ 543 (1131)
.++.. .+..+ ...+..+++. ++|.+.++ |.. .+.|..||.++++..... ....
T Consensus 115 ~g~~~-~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 115 DGQAH-LLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp TSCEE-EEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred CCCEE-EEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 56543 22211 1235667774 46677775 332 256777776555443322 3335
Q ss_pred EEEEEEccCCCEEEEEeecC--CCCceEEEEeCCCCeee--EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 544 CTTMLYSADGSRLFSCGTSK--EGDSHLVEWNESEGALK--RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 544 v~~~~~s~~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
...++|+||++.|+.+.... .+.+.|++|++..+... ..+..........++++++|+ |.++..+ .|.+|+. .
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~ 266 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-D 266 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-T
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-C
Confidence 67899999999888775310 01268999998765421 122211222345688999998 4444444 4999998 5
Q ss_pred CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001178 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1131)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~ 657 (1131)
++.+..+.... .+.+++|+++++.|++++.++..+
T Consensus 267 g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 267 GQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp SCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 66666666543 478999999999998888765433
No 229
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.13 E-value=7.2e-10 Score=121.80 Aligned_cols=185 Identities=14% Similarity=0.071 Sum_probs=134.7
Q ss_pred cceEEEEeecCCceEEEeeecceeeEEeecCCCC--C-CCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCC
Q 001178 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ--N-PSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN 844 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~--~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d 844 (1131)
..+..+++++....+++++.++ +.+|++..... . ..+. .+ ..... .+.. |..++| |
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~-----------~~--~~~~~----~lp~-V~~l~f--d 96 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTP-----------LT--FKWEK----EIPD-VIFVCF--H 96 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCC-----------CC--CSEEE----ECTT-EEEEEE--E
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccc-----------cc--ceEEe----eCCC-eeEEEE--C
Confidence 3688899999999999888874 45587653210 0 0000 00 00000 2345 999999 9
Q ss_pred CCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEE
Q 001178 845 DSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA 924 (1131)
Q Consensus 845 g~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 924 (1131)
+++|+++.++.|++||+.+.........+...+.++.+.+ .. +|+++.||.|.+||+.++.... +...|+|++
T Consensus 97 ~~~L~v~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~ 169 (388)
T 1xip_A 97 GDQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-NT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFD 169 (388)
T ss_dssp TTEEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-SE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEE
T ss_pred CCEEEEEcCCcEEEEEchhhhccCccceeecceeeEEecC-CC--EEEEECCCCEEEEEccCCcccc----ccCCceEEE
Confidence 9999999889999999988776666667777888888776 32 8889999999999999877543 556899999
Q ss_pred EccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec----CC-CCCCCCceEEEEcCCCcEEEE
Q 001178 925 FSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL----PA-GKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 925 ~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~----~~-~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
|||+| ++.|..||++++|+.+.++......+.. .. ..+...+.++.|.+++.++++
T Consensus 170 WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 170 VTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999 7889999999999998866421111211 11 012378999999999999987
No 230
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.11 E-value=5.2e-08 Score=106.89 Aligned_cols=223 Identities=7% Similarity=0.028 Sum_probs=143.6
Q ss_pred CeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe
Q 001178 835 VVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~ 912 (1131)
...+.+|+|++..++..+ ++.|..||..+++... +. ....+.++++++ +++++++. .+ .|.+||..+++....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 346789999866555544 6899999998876543 33 245799999999 78777654 44 499999887765432
Q ss_pred ecc----cccCeeEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 913 LKG----HQKHITGLAFSTNLNILVSSGS------DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 913 ~~~----h~~~V~~l~~s~dg~~l~s~~~------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
... ....+.+++++|+|+++++... .+.|..++ +++... .... ......++|+||++.+++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~------~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFAD------ISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEE------ESSEEEEEECTTSCEEEE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCC------CcccCCeEEcCCCCEEEE
Confidence 221 1235889999999998776542 24455555 333211 1110 024568999999998766
Q ss_pred Ee--CCeEEEEeCC--Cc-ccc--eeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccC
Q 001178 983 NH--ETQLAIYDGS--KM-ECI--RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQ 1055 (1131)
Q Consensus 983 ~~--d~~i~vwd~~--~~-~~~--~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1055 (1131)
+. ++.|.+|++. ++ ... ..+.........+..++++++|.++++...++.|.+|+. +++.+..+....
T Consensus 196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~---- 270 (326)
T 2ghs_A 196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG---- 270 (326)
T ss_dssp EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC----
T ss_pred EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC----
Confidence 54 6789999986 55 321 122211111346788999999998887766789999998 576666554221
Q ss_pred CCCCCCCccccEEEEEc-CCCCCeE-EEEecC
Q 001178 1056 ASPNSSQTVFPLVVTSH-PQEPNQL-AVGLTD 1085 (1131)
Q Consensus 1056 ~~~~~~~~v~~~~v~~~-p~~~~~l-~s~~~D 1085 (1131)
..+.+++|. | ++..| ++...+
T Consensus 271 --------~~~~~~af~g~-d~~~L~vt~~~~ 293 (326)
T 2ghs_A 271 --------KQTTCPAFIGP-DASRLLVTSARE 293 (326)
T ss_dssp --------SBEEEEEEEST-TSCEEEEEEBCT
T ss_pred --------CCcEEEEEecC-CCCEEEEEecCC
Confidence 124578887 6 44444 444444
No 231
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.09 E-value=8.6e-05 Score=88.04 Aligned_cols=525 Identities=9% Similarity=0.021 Sum_probs=268.7
Q ss_pred CCCeEEEEEecCCC-ccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCce--eEEecCCccCeEEEee
Q 001178 429 TKHLIHLYTYQGSN-DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK--LFQFEGHEAPVYSVCP 505 (1131)
Q Consensus 429 ~d~~i~vwd~~~~~-~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~h~~~v~~~~~ 505 (1131)
....|+..++.+.. ... .+...-.....++|++.+.. ++++-...+.|..++..|.. ...+.........+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 34568888887642 111 12223445789999997764 45555567788888865542 2223333356788888
Q ss_pred cccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEec
Q 001178 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585 (1131)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 585 (1131)
.+. ++++.++-...+.|.+.+++.................+++.|.+.+|+.+..+ ..+.|...++. |.....+..
T Consensus 92 D~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~d-G~~~~~l~~ 167 (619)
T 3s94_A 92 DWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMD-GSSRFIIIN 167 (619)
T ss_dssp ETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETT-SCSCEEEEC
T ss_pred Eec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECC-CCceEEEEe
Confidence 653 33566666778999999988655444443444457789999987777666421 24577777765 443333332
Q ss_pred ccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 586 FRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
........++++++++.|+.+. ..+.|...++............ ......+++..+ .+.++-...+.|...|..++
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 2333567899999877776654 4677888888765443333211 113467777665 34444445678888887666
Q ss_pred chhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcce
Q 001178 665 LRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPW 744 (1131)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w 744 (1131)
.. ...+...... . ..+..+.|... ... ..+...-+++-. .+
T Consensus 245 ~~-~~~i~~~~~~----------p--~~i~v~~~~~q------p~~-~n~C~~~ng~Cs-------~l------------ 285 (619)
T 3s94_A 245 EG-LREIHSDIFS----------P--MDIHAFSQQRQ------PNA-TNPCGIDNGGCS-------HL------------ 285 (619)
T ss_dssp CC-CEECCSCCCC----------C--SEEEECCGGGS------CCC-CCTTTTTGGGCS-------SE------------
T ss_pred cc-cEEEecCCCC----------C--cEEEEEccccC------CCc-cccccCCCCccc-------ce------------
Confidence 32 1111110000 0 00111222100 000 000000000000 00
Q ss_pred eeeccc-CCceeEEEEcCCCC-CCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCc
Q 001178 745 ELTEIV-DPLQCRVVAMPEST-DSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGL 822 (1131)
Q Consensus 745 ~~~~~~-~~~~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 822 (1131)
-+.... ....|. -+..- -......+. +....++..+..+.|+..++......
T Consensus 286 Cl~~~~~~~~~C~---C~~g~~l~~d~~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~~-------------------- 339 (619)
T 3s94_A 286 CLMSPVKPFYQCA---CPTGVKLLENGKTCK---DGATELLLLARRTDLRRISLDTPDFT-------------------- 339 (619)
T ss_dssp EEECSSTTSEEEE---CCTTCCBCTTSSCBC---SSCSEEEEEEESSCEEEEESSSTTCC--------------------
T ss_pred EECCCCCCCceEe---CCchheecccCcccC---CCCceEEEEEcccceEEEecCCCccc--------------------
Confidence 000000 000000 00000 000000000 00112222233344544443321110
Q ss_pred ccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEE
Q 001178 823 LMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQ 900 (1131)
Q Consensus 823 ~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~ 900 (1131)
.....+ ..-..+..++|.+.+..|..++ .+.|+.+++.+......+...-.....+++.+.++++..+-+..+.|.
T Consensus 340 ~~~~~~--~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~ 417 (619)
T 3s94_A 340 DIVLQL--EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIE 417 (619)
T ss_dssp CEECCC--SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred eeEEec--cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEE
Confidence 000011 1234567899998777777666 588999998765444444433456788999874566666666778899
Q ss_pred EEEeecceeEEeecccccCeeEEEEccCCCEEEEEe--CCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCc
Q 001178 901 IYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 901 iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~--~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 978 (1131)
+.+++.......+...-....+|++.|....|.... ....|...+++..... . .. .. .-.....+++++++.
T Consensus 418 v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~-~-l~---~~-~l~~P~GlalD~~~~ 491 (619)
T 3s94_A 418 VTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV-V-LV---NT-SLGWPNGLALDYDEG 491 (619)
T ss_dssp EEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-E-EE---CS-SCSCEEEEEEETTTT
T ss_pred EEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE-E-EE---eC-CCCCCeeeEEcccCC
Confidence 998875433222333345678999999744444433 2356777776653321 1 11 11 114567899999888
Q ss_pred EEEEEe--CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCc
Q 001178 979 RLLVNH--ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLR 1042 (1131)
Q Consensus 979 ~l~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~ 1042 (1131)
.|..++ .+.|..+++........+... -....++++..+ +|+.+. ..+.|...+..+|.
T Consensus 492 ~LY~aD~~~~~I~~~~~dG~~~~~~~~~~---l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 492 KIYWGDAKTDKIEVMNTDGTGRRVLVEDK---IPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEEEETTTTEEEEEESSSCCCEEEEECC---CCSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred EEEEEECCCCEEEEEecCCCceEEEeccC---CCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence 888765 567888888643322222222 122345555433 566655 44677777877774
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.07 E-value=6.6e-08 Score=117.02 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=59.0
Q ss_pred CCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcC
Q 001178 896 DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1131)
Q Consensus 896 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 975 (1131)
+|.|..||+.+++.+-..+.+. ++..-.++..+.++++++.|+.|+.||.++++.+..... ..+ ....-+.|..
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~--~~~---~~~~p~ty~~ 527 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA--ASG---VMAAPVTYSV 527 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC--SSC---CCSCCEEEEE
T ss_pred ceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC--CCC---cccCceEEEE
Confidence 3789999999999888776553 344446667788999999999999999999987655433 222 2233467778
Q ss_pred CCcEEEE
Q 001178 976 DQVRLLV 982 (1131)
Q Consensus 976 d~~~l~~ 982 (1131)
+|+..++
T Consensus 528 ~G~qyv~ 534 (689)
T 1yiq_A 528 DGEQYVT 534 (689)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 8886554
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.07 E-value=3.4e-08 Score=119.32 Aligned_cols=351 Identities=12% Similarity=0.129 Sum_probs=201.4
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCC----------ceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeE
Q 001178 553 GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK----------SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM 622 (1131)
Q Consensus 553 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~----------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1131)
+..+++++. ++.|+.+|..+|+.+-.+...... ....+++ ++..+++++.|+.|+.+|..+|+.
T Consensus 77 ~g~vyv~~~----~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~ 150 (677)
T 1kb0_A 77 DGIMYVSAS----WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKE 150 (677)
T ss_dssp TTEEEEECG----GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEECC----CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCE
Confidence 445655554 688999999999998887643211 0112333 457899999999999999999999
Q ss_pred EEEEecc-CCC--CCcc-eEEEcCCCCEEEEEEC------CCcEEEEecCCCchhhhhhhccccccccccccccccCccc
Q 001178 623 LTSTEAE-GGL--PSLP-RLRFNKEGNLLVVTTA------DQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAV 692 (1131)
Q Consensus 623 ~~~~~~~-~~~--~~i~-~v~~sp~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1131)
+...... ... ..+. .... .+..+++++. ++.|+.||..++....+ +........
T Consensus 151 ~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~-~~~~~~~~~------------- 214 (677)
T 1kb0_A 151 VWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR-WFSVPGDPS------------- 214 (677)
T ss_dssp EEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE-EESSCCCTT-------------
T ss_pred EeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE-eccCCCCcc-------------
Confidence 9887754 110 0111 1111 2345555543 68999999998843322 111000000
Q ss_pred eecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEE
Q 001178 693 VTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772 (1131)
Q Consensus 693 ~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 772 (1131)
..++....+.....|.... .... . .........
T Consensus 215 -------------------------------------~~~~~~~~~~g~~~w~~~g--~~~~-----~---~~g~~~w~~ 247 (677)
T 1kb0_A 215 -------------------------------------KPFEDESMKRAARTWDPSG--KWWE-----A---GGGGTMWDS 247 (677)
T ss_dssp -------------------------------------SCCSSHHHHHHHTTSCGGG--CHHH-----H---CEECCCCSC
T ss_pred -------------------------------------ccccccccccccccccccC--ceeE-----e---CCCcccccc
Confidence 0000000000011121000 0000 0 001122235
Q ss_pred EEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCC-------CCCeeEEEecCCC
Q 001178 773 LLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENA-------EDVVPCVALSKND 845 (1131)
Q Consensus 773 l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-------~~~i~~l~~s~dg 845 (1131)
+++++++..++++..++.. |....... ..+.......+..+|..+|+.....-...| ......+....+|
T Consensus 248 ~~~d~~~~~vy~~~~~~~~--w~~~~~~~-~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 248 MTFDAELNTMYVGTGNGSP--WSHKVRSP-KGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp EEEETTTTEEEEECCCEES--SCHHHHST-TCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred eeEcCCCCEEEEECCCCcc--ccCCCCCc-cCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 7888888888888776543 33221110 001111112345567777766553221111 1222333444577
Q ss_pred ---CEEEEEe-CCeEEEEECCCceeEEEEeCCCC----------C-e------------------------eEEEEeCCC
Q 001178 846 ---SYVMSAG-GGKVSLFNMMNFKVMTTFMSPPP----------A-S------------------------TFLAFHPQD 886 (1131)
Q Consensus 846 ---~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~----------~-i------------------------~~l~~s~~~ 886 (1131)
+.++.++ +|.|.++|..+++.+..+..... . + ..++|+| +
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~ 403 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-Q 403 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-T
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-C
Confidence 5777777 89999999999999877652210 0 1 1568899 6
Q ss_pred CcEEEEEeC-------------------------------------------CCcEEEEEeecceeEEeecccccCeeEE
Q 001178 887 NNIIAIGME-------------------------------------------DSTIQIYNVRVDEVKTKLKGHQKHITGL 923 (1131)
Q Consensus 887 ~~~la~g~~-------------------------------------------dg~I~iwd~~~~~~~~~~~~h~~~V~~l 923 (1131)
+.++++... .|.|..||+.+++.+-... +..++.+.
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g 482 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGG 482 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCC
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCc
Confidence 666666543 2789999999999887766 44456666
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 924 AFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 924 ~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
.++.++..++.++.||.+++||..+++.+...... .+ ....-+.+..+|+.+++
T Consensus 483 ~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~--~~---~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 483 TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG--TG---VVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS--SC---CCSCCEEEEETTEEEEE
T ss_pred ceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC--CC---cccCCEEEEeCCEEEEE
Confidence 77788889999999999999999999876655432 22 23345666788875554
No 234
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.06 E-value=1.8e-08 Score=110.56 Aligned_cols=296 Identities=7% Similarity=-0.128 Sum_probs=182.7
Q ss_pred cEEEEEecCC----eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec------CCCCceEEEEeCCCCeeeE
Q 001178 512 HFIFSTAVDG----KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNESEGALKR 581 (1131)
Q Consensus 512 ~~l~s~s~dg----~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~~~~~~i~iwd~~~~~~~~ 581 (1131)
...++...++ +|.++|.++.+.+..+.....+ .+.++|||++++++... +..++.|.+||..+++.+.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~ 110 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA 110 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence 3444444455 8889999999888887766666 79999999999988631 0126789999999999999
Q ss_pred EEeccc------CCceEEEEEeCCCCEEEEEEc--CCcEEE--EEcCCCeEEEEEeccCCCCCcceEEEcCCC-CEEEEE
Q 001178 582 TYIGFR------KKSAGVVQFDTTRNRILAAGE--DNQIKF--WDMDNVNMLTSTEAEGGLPSLPRLRFNKEG-NLLVVT 650 (1131)
Q Consensus 582 ~~~~~~------~~~v~~~~~s~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~i~~v~~sp~~-~~l~~~ 650 (1131)
.+.... ......+.++|||++++++.. +..+.+ +|..+ +..+...+. ..+.|++ ..+++.
T Consensus 111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~------~~~~p~g~~~~~~~ 181 (368)
T 1mda_H 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC------FHIHPGAAATHYLG 181 (368)
T ss_dssp EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC------CCCEEEETTEEECC
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc------eEEccCCCeEEEEE
Confidence 886431 113446899999999998874 467888 88877 455543221 1123433 344556
Q ss_pred ECCCcEEEEecCC----CchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCcccc
Q 001178 651 TADQGIKILANAD----GLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAAR 726 (1131)
Q Consensus 651 ~~dg~i~iw~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 726 (1131)
+.||.+.+.++.+ ..+....
T Consensus 182 ~~dg~~~~vd~~~~~~~~~~v~~~-------------------------------------------------------- 205 (368)
T 1mda_H 182 SCPASLAASDLAAAPAAAGIVGAQ-------------------------------------------------------- 205 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCC--------------------------------------------------------
T ss_pred cCCCCEEEEECccccccCCeEEEE--------------------------------------------------------
Confidence 6788887777755 1000000
Q ss_pred CCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCc
Q 001178 727 GIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGK 806 (1131)
Q Consensus 727 ~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 806 (1131)
.+ ..+.+. ..+. + ++++..++..+. +.+.+.|+......
T Consensus 206 ------------~t-~~i~vg-------------------~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~---- 244 (368)
T 1mda_H 206 ------------CT-GAQNCS-------------------SQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGAT---- 244 (368)
T ss_dssp ------------SC-TTSCBC-------------------SCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCE----
T ss_pred ------------ee-eeeeCC-------------------CCcc---c-cccCCEEEEEcC-CEEEEEECCCCcce----
Confidence 00 001100 0111 2 455555555555 67766665321100
Q ss_pred cceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--C-C-------eEEEEECCCceeEEEEeCCCCC
Q 001178 807 ATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--G-G-------KVSLFNMMNFKVMTTFMSPPPA 876 (1131)
Q Consensus 807 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--d-g-------~i~vwd~~~~~~~~~~~~~~~~ 876 (1131)
....|........... ........+++++|++.+.++. . + .+.++|+.+++.+.++.... .
T Consensus 245 -----v~~~~~~~~~~~~~~~---~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~ 315 (368)
T 1mda_H 245 -----MKAAIDGNESGRKADN---FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-D 315 (368)
T ss_dssp -----EECCCCSSCTHHHHTT---EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-E
T ss_pred -----EEEEEEeccccccccc---cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-C
Confidence 0011222211100000 0111222368999999888653 2 2 57799999999998876433 5
Q ss_pred eeEEEEeCCCCc-EEEEEe-CCCcEEEEEeecceeEEeecccccCeeEEEEc
Q 001178 877 STFLAFHPQDNN-IIAIGM-EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFS 926 (1131)
Q Consensus 877 i~~l~~s~~~~~-~la~g~-~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 926 (1131)
...++|+| |++ ++++.. .+++|.++|+.+++.+..+..... -..+++.
T Consensus 316 p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~ 365 (368)
T 1mda_H 316 SDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQ 365 (368)
T ss_dssp ECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred cceEEECC-CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEee
Confidence 88999999 565 666666 599999999999999999886654 3455554
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.06 E-value=6.2e-08 Score=109.04 Aligned_cols=147 Identities=12% Similarity=0.105 Sum_probs=98.3
Q ss_pred EEEEEcCCCcEEEEe-CCCceeEEecCCc---------cCeE-EEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec
Q 001178 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHE---------APVY-SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD 538 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd-~~~~~~~~~~~h~---------~~v~-~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 538 (1131)
.++.++.++.|..+| .+|+.+..+.... ..+. .+.. ++..++.++.++.|..+|.++++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 477788889999999 7899887665421 2222 2222 23578888999999999999988887665
Q ss_pred CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCc----eEEEEEeCCCCEEEEEEcCCcEEE
Q 001178 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS----AGVVQFDTTRNRILAAGEDNQIKF 614 (1131)
Q Consensus 539 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~i~i 614 (1131)
............ +..+++++. ++.|+.+|..+|+.+..+....... ....... +..+++++.++.|..
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEEE--CCEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 543321112222 345666554 7899999999999887776432110 0112222 457888888999999
Q ss_pred EEcCCCeEEEEEec
Q 001178 615 WDMDNVNMLTSTEA 628 (1131)
Q Consensus 615 wd~~~~~~~~~~~~ 628 (1131)
+|..+++.+.....
T Consensus 203 ~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 203 VLMEQGQMIWQQRI 216 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999988776654
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.03 E-value=8.4e-08 Score=105.05 Aligned_cols=237 Identities=11% Similarity=0.141 Sum_probs=148.9
Q ss_pred Eec--CCCCEEEEEe--CCeEEEEECCCc----eeEEEEe-------CCCCCeeEEEEeCCCCcEEEEEeCC------Cc
Q 001178 840 ALS--KNDSYVMSAG--GGKVSLFNMMNF----KVMTTFM-------SPPPASTFLAFHPQDNNIIAIGMED------ST 898 (1131)
Q Consensus 840 ~~s--~dg~~la~~~--dg~i~vwd~~~~----~~~~~~~-------~~~~~i~~l~~s~~~~~~la~g~~d------g~ 898 (1131)
.++ +++++|++.+ ++.|.|+|+.+. +..+++. ........+..+| ++ ++++...+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 446 8899999887 688999999866 6666663 1122456788899 77 66666555 78
Q ss_pred EEEEEeecceeEEeecccccC---eeEEEEccCCCEEEEEe-------------------CCCcEEEEEcCCCceeeeee
Q 001178 899 IQIYNVRVDEVKTKLKGHQKH---ITGLAFSTNLNILVSSG-------------------SDAQLIFWNTDTWEKRKSIA 956 (1131)
Q Consensus 899 I~iwd~~~~~~~~~~~~h~~~---V~~l~~s~dg~~l~s~~-------------------~Dg~v~lwd~~~~~~~~~~~ 956 (1131)
|.++|..+.+.+..+....++ -..+.|+|+++.+++.. .+.+|.+||+.+++......
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 999999999999888633222 34588899999998885 36789999999865443322
Q ss_pred eecCCCCCCCCceEEEE--cCCCcEEEEEe-------CCeEEEEeCCCccc--ceee--ecC-------------CCCCC
Q 001178 957 IQLPAGKLPVGETRVQF--HSDQVRLLVNH-------ETQLAIYDGSKMEC--IRQW--VPQ-------------DVLSS 1010 (1131)
Q Consensus 957 ~~~~~~~~~~~v~~v~~--s~d~~~l~~~~-------d~~i~vwd~~~~~~--~~~~--~~~-------------~~~~~ 1010 (1131)
. . ........+.| +|+++++.++. ++.|.+|..+.+.. .+.+ ... .....
T Consensus 246 v--g--~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~ 321 (462)
T 2ece_A 246 L--G--EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPP 321 (462)
T ss_dssp S--C--TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECC
T ss_pred c--C--CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCC
Confidence 2 1 11123344545 99999887743 45676655443321 1110 000 00023
Q ss_pred CeEEEEEccCCCEEEEEec-CCcEEEEECCC---CceeeEecCCccc--cCCCCCCCCccccEEEEEcCCCCCeEEEEe
Q 001178 1011 PISSAAYSCNSQLIYATFT-DGSIGVFDADS---LRLRCRIAPSAYM--SQASPNSSQTVFPLVVTSHPQEPNQLAVGL 1083 (1131)
Q Consensus 1011 ~v~~i~~s~dg~~l~s~~~-dg~i~vwd~~~---~~~~~~~~~~~~~--~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~ 1083 (1131)
....|.+|+||++|.++.. .+.|.+||+.. .+++..+...... +.+.........+-.+.++| |+++|.++.
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 5788999999999999885 68999999863 3444444322100 00000000001244588888 667777777
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.01 E-value=3.1e-08 Score=109.22 Aligned_cols=301 Identities=12% Similarity=0.079 Sum_probs=179.9
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec
Q 001178 459 DLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD 538 (1131)
Q Consensus 459 ~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 538 (1131)
++.+..++. +..++.++.|..||.+++.+..+......+.++.. ..++ .++.++.+ |..+|. +++....+.
T Consensus 24 ~~~~d~~g~---l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~--~~~g-~l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 24 SPILAKNGT---IYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSI--GKDG-TIYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CCEECTTSC---EECSSTTTTTEEECTTSCEEESSCGGGEEEECCEE--TTTT-EECCSSCE--EEEECC-CGGGGGGSC
T ss_pred CceEccCCe---EEEEcCCCEEEEECCCCcEEEEEecCCCcccceEE--ecCC-cEEEecCc--EEEECC-CCcEEEEEE
Confidence 445555665 67777888899999777776665544444455554 2343 45555555 888875 444433332
Q ss_pred CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcC
Q 001178 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1131)
Q Consensus 539 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1131)
..........+. +..+..++. ++.|..+|.. ++....+..... .+.++...+++. ++.++.++.|..+|..
T Consensus 95 ~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~~ 165 (330)
T 3hxj_A 95 TKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINPD 165 (330)
T ss_dssp C-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECTT
T ss_pred CCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECCC
Confidence 222222223333 445555543 6789999988 777666654332 455566666665 6667788999999998
Q ss_pred CCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccc
Q 001178 619 NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1131)
Q Consensus 619 ~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1131)
++.+........ .+.++...+++.+.+ ++ +.|..++ .++..
T Consensus 166 -g~~~~~~~~~~~--~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~-------------------------------- 206 (330)
T 3hxj_A 166 -GTEKWRFKTNDA--ITSAASIGKDGTIYF-GS--DKVYAIN-PDGTE-------------------------------- 206 (330)
T ss_dssp -SCEEEEEECSSC--CCSCCEECTTCCEEE-ES--SSEEEEC-TTSCE--------------------------------
T ss_pred -CCEeEEEecCCC--ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcE--------------------------------
Confidence 777666654432 567777777776444 33 6677776 33310
Q ss_pred cccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecC
Q 001178 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS 778 (1131)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 778 (1131)
+|...
T Consensus 207 --------------------------------------------~~~~~------------------------------- 211 (330)
T 3hxj_A 207 --------------------------------------------KWNFY------------------------------- 211 (330)
T ss_dssp --------------------------------------------EEEEC-------------------------------
T ss_pred --------------------------------------------EEEEc-------------------------------
Confidence 00000
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEE
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSL 858 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~v 858 (1131)
.....+.+++..++|.+.+...++.|..
T Consensus 212 ----------------------------------------------------~~~~~~~~~~~~~~g~l~v~t~~~gl~~ 239 (330)
T 3hxj_A 212 ----------------------------------------------------AGYWTVTRPAISEDGTIYVTSLDGHLYA 239 (330)
T ss_dssp ----------------------------------------------------CSSCCCSCCEECTTSCEEEEETTTEEEE
T ss_pred ----------------------------------------------------cCCcceeceEECCCCeEEEEcCCCeEEE
Confidence 0012234455666665555544667777
Q ss_pred EECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCC
Q 001178 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD 938 (1131)
Q Consensus 859 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 938 (1131)
+|. +++.+..+......+..+.+.+ ++. |.+++.+|.|..+|. +++.+..+......+.++...++|. |..++.+
T Consensus 240 ~~~-~g~~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~ 314 (330)
T 3hxj_A 240 INP-DGTEKWRFKTGKRIESSPVIGN-TDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRN 314 (330)
T ss_dssp ECT-TSCEEEEEECSSCCCSCCEECT-TSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTT
T ss_pred ECC-CCCEeEEeeCCCCccccceEcC-CCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCC
Confidence 764 4455555554444445566655 454 556888888999995 6776666665566678888877776 4557889
Q ss_pred CcEEEEEcCC
Q 001178 939 AQLIFWNTDT 948 (1131)
Q Consensus 939 g~v~lwd~~~ 948 (1131)
|.+++...+.
T Consensus 315 G~~~~~~~~~ 324 (330)
T 3hxj_A 315 GKFYALFNLE 324 (330)
T ss_dssp SCEEEEEC--
T ss_pred CeEEEEeccc
Confidence 9998887655
No 238
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.99 E-value=0.0002 Score=84.96 Aligned_cols=486 Identities=8% Similarity=-0.030 Sum_probs=245.0
Q ss_pred CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEecCCCccce
Q 001178 368 GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-TKHLIHLYTYQGSNDLCQ 446 (1131)
Q Consensus 368 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~-~d~~i~vwd~~~~~~~~~ 446 (1131)
....|+..|+........ .....-..+..++|++.+..|..+. ..+.|..+++.+.....
T Consensus 16 ~~~~I~~i~~~~~~~~~~------------------~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~- 76 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ- 76 (619)
T ss_dssp CSSBEEEECCC---------------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE-
T ss_pred ccccEEEEeCCCCcceEE------------------EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE-
Confidence 456888888876431110 1122344578999999777666554 46789999987653211
Q ss_pred eeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec-CCccCeEEEeecccCCccEEEEE-ecCCeEE
Q 001178 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFST-AVDGKIK 524 (1131)
Q Consensus 447 ~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~ 524 (1131)
..+..-......+++.+.+.. ++++-...+.|.+.+.+|+....+. ..-.....+++.+.. +.++++- +..+.|.
T Consensus 77 -~v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~ 153 (619)
T 3s94_A 77 -NVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIE 153 (619)
T ss_dssp -EEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEE
T ss_pred -EEEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEE
Confidence 122222356889999997664 5666677889999997777655543 344456778886543 3333443 2245677
Q ss_pred EEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEE
Q 001178 525 AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRIL 604 (1131)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 604 (1131)
..+++.................+++++++..|+.+-. ....|...|...........+... ....+++..+ .++
T Consensus 154 r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~---~~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~--~ly 227 (619)
T 3s94_A 154 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED--ILY 227 (619)
T ss_dssp EEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---TTCCEEEESSSCCEEC----------CCCEEESSS--EEE
T ss_pred EEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---CCCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC--EEE
Confidence 6777654444444344456899999998888887743 367899999865433322221111 2234556443 444
Q ss_pred EE-EcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEE-cCCCCEEEEEECCCcEEEEecCCCchhhhhhhcccccccccc
Q 001178 605 AA-GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRAS 682 (1131)
Q Consensus 605 ~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~-sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1131)
.+ ...+.|...|..+++....+..... ....+.+ +|..+-. + .. .+... .+.-..
T Consensus 228 ~td~~~~~V~~~d~~tg~~~~~i~~~~~--~p~~i~v~~~~~qp~--~------------~n-~C~~~-ng~Cs~----- 284 (619)
T 3s94_A 228 WTDWSTHSILACNKYTGEGLREIHSDIF--SPMDIHAFSQQRQPN--A------------TN-PCGID-NGGCSH----- 284 (619)
T ss_dssp EECTTTCSEEEEESSSCCCCEECCSCCC--CCSEEEECCGGGSCC--C------------CC-TTTTT-GGGCSS-----
T ss_pred EecCCCCEEEEEECCCCcccEEEecCCC--CCcEEEEEccccCCC--c------------cc-cccCC-CCcccc-----
Confidence 44 3567788888877765554432211 1222222 1210000 0 00 00000 000000
Q ss_pred ccccccCccceecccccccccccccCCCCCCccccccCCCccccC-CCCceeccccCCCCcceeeecccCCceeEEEEcC
Q 001178 683 TEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG-IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMP 761 (1131)
Q Consensus 683 ~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~ 761 (1131)
.++.........+.+|. +-.+. .+...+. ....++.-+..+.++..++...... .+.++
T Consensus 285 lCl~~~~~~~~~C~C~~---------------g~~l~-~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~----~~~~~ 344 (619)
T 3s94_A 285 LCLMSPVKPFYQCACPT---------------GVKLL-ENGKTCKDGATELLLLARRTDLRRISLDTPDFT----DIVLQ 344 (619)
T ss_dssp EEEECSSTTSEEEECCT---------------TCCBC-TTSSCBCSSCSEEEEEEESSCEEEEESSSTTCC----CEECC
T ss_pred eEECCCCCCCceEeCCc---------------hheec-ccCcccCCCCceEEEEEcccceEEEecCCCccc----eeEEe
Confidence 00000000000112222 00000 0000000 0111222222344544444332111 11111
Q ss_pred CCCCCccceEEEEeecCCceEEEeee-cceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEE
Q 001178 762 ESTDSASKVARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVA 840 (1131)
Q Consensus 762 ~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~ 840 (1131)
. .....+..++|.+.+..|+.+.. .+.|..++++.... . .+.. ..-.....++
T Consensus 345 ~--~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-------~------------~v~~-----~~~~~p~GlA 398 (619)
T 3s94_A 345 L--EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-------Q------------FVVT-----AQIAHPDGIA 398 (619)
T ss_dssp C--SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------E------------EEEC-----SSCSCCCEEE
T ss_pred c--cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-------E------------EEEE-----CCCCCcCceE
Confidence 1 12345678999986666665543 56665555432100 0 0000 1224556899
Q ss_pred ecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeC-CCcEEEEEeecceeEEeecccc
Q 001178 841 LSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME-DSTIQIYNVRVDEVKTKLKGHQ 917 (1131)
Q Consensus 841 ~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~-dg~I~iwd~~~~~~~~~~~~h~ 917 (1131)
+...+..|..+. .+.|.+.++.+......+...-.....+++.|..|.+..+-.. .+.|...+++...........-
T Consensus 399 vD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l 478 (619)
T 3s94_A 399 VDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSL 478 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred EecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCC
Confidence 988667666665 5789999987654333333344678999999944555444322 3566666654322222223334
Q ss_pred cCeeEEEEccCCCEEEEEe-CCCcEEEEEcCCCc
Q 001178 918 KHITGLAFSTNLNILVSSG-SDAQLIFWNTDTWE 950 (1131)
Q Consensus 918 ~~V~~l~~s~dg~~l~s~~-~Dg~v~lwd~~~~~ 950 (1131)
...+.|++++++..|..+. ..+.|...+++...
T Consensus 479 ~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 479 GWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred CCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 5678999998766666554 45678888887644
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.97 E-value=2.8e-08 Score=109.63 Aligned_cols=217 Identities=13% Similarity=0.106 Sum_probs=139.3
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec
Q 001178 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE 494 (1131)
Q Consensus 415 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 494 (1131)
..+..+|. |..++.++.|..|| .+++.+. ....+...+.++...+++. +..++.+ +..+|.+|+.+..+.
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~---~~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~~g~~~~~~~ 94 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKW---FFKSGEIIECRPSIGKDGT---IYFGSDK--VYAINPDGTEKWRFD 94 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCEEE---SSCGGGEEEECCEETTTTE---ECCSSCE--EEEECCCGGGGGGSC
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcEEE---EEecCCCcccceEEecCCc---EEEecCc--EEEECCCCcEEEEEE
Confidence 44445554 45566788899999 7776433 2222344467777777775 5555555 888887776665554
Q ss_pred CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC
Q 001178 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
..........+. +..++.++.++.|..+|.+ +............+.++...+++..++ ++. ++.|..+|.
T Consensus 95 ~~~~~~~~~~~~----~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~v-gt~----~~~l~~~d~ 164 (330)
T 3hxj_A 95 TKKAIVSDFTIF----EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYV-GSN----DNYLYAINP 164 (330)
T ss_dssp C-----CCEEEE----TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEE-ECT----TSEEEEECT
T ss_pred CCCCcccCceEE----CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEE-EcC----CCEEEEECC
Confidence 333333333332 2467888889999999988 666666555555566677777887554 432 688999998
Q ss_pred CCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCC
Q 001178 575 SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1131)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg 654 (1131)
. ++.+..+.... ..+.++.+.+++. ++.++ +.|..+| .+++......... ..+.++...++|. +.+++.++
T Consensus 165 ~-g~~~~~~~~~~-~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~g~-l~v~t~~~ 235 (330)
T 3hxj_A 165 D-GTEKWRFKTND-AITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGY--WTVTRPAISEDGT-IYVTSLDG 235 (330)
T ss_dssp T-SCEEEEEECSS-CCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSS--CCCSCCEECTTSC-EEEEETTT
T ss_pred C-CCEeEEEecCC-CceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCC--cceeceEECCCCe-EEEEcCCC
Confidence 8 87776666433 3566677767766 44444 7899999 6777666655433 2578888888775 45566667
Q ss_pred cEEEEe
Q 001178 655 GIKILA 660 (1131)
Q Consensus 655 ~i~iw~ 660 (1131)
.+..++
T Consensus 236 gl~~~~ 241 (330)
T 3hxj_A 236 HLYAIN 241 (330)
T ss_dssp EEEEEC
T ss_pred eEEEEC
Confidence 776665
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.96 E-value=9.7e-08 Score=108.53 Aligned_cols=273 Identities=16% Similarity=0.114 Sum_probs=172.0
Q ss_pred cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEE-e-CCCCEEEEEE------------------cCC
Q 001178 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQF-D-TTRNRILAAG------------------EDN 610 (1131)
Q Consensus 551 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~~~~------------------~dg 610 (1131)
+||++++.+.. .+.+|.+.|+.+.+..+.+.-........+++ + |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 48999988753 36789999999999888665433345777887 5 8999999985 246
Q ss_pred cEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCc
Q 001178 611 QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGS 690 (1131)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1131)
.+.+.|..+.+....+...+. ...++++|+|+++++.+.+..- + ..+........
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~-~~i~~~~~~~~-------------- 230 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------G-MTLPEMTAAEM-------------- 230 (595)
T ss_dssp EEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------C-SSHHHHTCCSE--------------
T ss_pred eEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------C-cchhhcccccc--------------
Confidence 799999999999998886552 4678899999999999876321 0 00000000000
Q ss_pred cceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccce
Q 001178 691 AVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKV 770 (1131)
Q Consensus 691 ~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i 770 (1131)
..+.+.+....
T Consensus 231 ------------------------------------------------d~v~V~~~~~~--------------------- 241 (595)
T 1fwx_A 231 ------------------------------------------------DHIVVFNIAEI--------------------- 241 (595)
T ss_dssp ------------------------------------------------EEEEEEEHHHH---------------------
T ss_pred ------------------------------------------------ceEEEeeccce---------------------
Confidence 00001110000
Q ss_pred EEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEE
Q 001178 771 ARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMS 850 (1131)
Q Consensus 771 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~ 850 (1131)
..+.++|+.... +.+.+.|..... +......+ .-.....++.++|||+++++
T Consensus 242 --~~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~I--pvg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 242 --EKAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYI--PIANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp --HHHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEE--EEESSCCCEEECTTSSEEEE
T ss_pred --eEeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEE--ecCCCceEEEEcCCCCEEEE
Confidence 001222332221 224444432210 11100001 01335568999999999999
Q ss_pred Ee--CCeEEEEECCCce------------eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec----------
Q 001178 851 AG--GGKVSLFNMMNFK------------VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV---------- 906 (1131)
Q Consensus 851 ~~--dg~i~vwd~~~~~------------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~---------- 906 (1131)
++ +++|.++|+.+.+ ...+.. -......++|+| +|...++...|+.|.+||+++
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~ 371 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKV 371 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSC
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhccccc
Confidence 88 6889999999763 233333 345689999999 676667778899999999987
Q ss_pred ceeEEeecccccCe-----eEEEEccCCCEEEEEeC---CCc----------EEEEEcCCCc
Q 001178 907 DEVKTKLKGHQKHI-----TGLAFSTNLNILVSSGS---DAQ----------LIFWNTDTWE 950 (1131)
Q Consensus 907 ~~~~~~~~~h~~~V-----~~l~~s~dg~~l~s~~~---Dg~----------v~lwd~~~~~ 950 (1131)
.+.+..+..|-.+- .++.++|||++|+++.. |+. -.++|+.+++
T Consensus 372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 55667766554332 23466899999998754 543 2789996544
No 241
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.96 E-value=1.7e-07 Score=105.36 Aligned_cols=283 Identities=12% Similarity=0.020 Sum_probs=169.9
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEE
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVS 857 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~ 857 (1131)
+..+++++.++.+..+|..+++ .+|....+.... ........+.+.....++ .+.+++ ++.|.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~-------------~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~v~v~~~~g~l~ 116 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGK-------------EIWSVSLAEKDG--WFSKEPALLSGGVTVSGG-HVYIGSEKAQVY 116 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCC-------------EEEEEECCC-----CCSCCCCCEEEEEEEETT-EEEEEETTSEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCc-------------eeeeecCccccc--cccccCcccccCceEeCC-EEEEEcCCCEEE
Confidence 5667777777888777754422 233322111000 000002223222222344 455555 89999
Q ss_pred EEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCe-----eEEEEccCCCEE
Q 001178 858 LFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI-----TGLAFSTNLNIL 932 (1131)
Q Consensus 858 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V-----~~l~~s~dg~~l 932 (1131)
.+|..+++.+................ ++ .+++++.++.|..+|..+++.+-......... ...... +..+
T Consensus 117 a~d~~tG~~~W~~~~~~~~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v 191 (376)
T 3q7m_A 117 ALNTSDGTVAWQTKVAGEALSRPVVS--DG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAA 191 (376)
T ss_dssp EEETTTCCEEEEEECSSCCCSCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEE
T ss_pred EEECCCCCEEEEEeCCCceEcCCEEE--CC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEE
Confidence 99999999987776543332333333 33 66778899999999999998876655432211 222222 4567
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeecCCCCCC-CC---c-eEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCC
Q 001178 933 VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP-VG---E-TRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDV 1007 (1131)
Q Consensus 933 ~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~-~~---v-~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~ 1007 (1131)
+.++.++.|..+|..+++.........+.+... .. + ..... .++..++.+.++.+..+|..+++.+.....
T Consensus 192 ~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--- 267 (376)
T 3q7m_A 192 VVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAYNGNLTALDLRSGQIMWKREL--- 267 (376)
T ss_dssp EECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEECTTSCEEEEETTTCCEEEEECC---
T ss_pred EEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEecCcEEEEEECCCCcEEeeccC---
Confidence 788889999999999988655543322111000 00 0 11111 234444445689999999999987755432
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCc
Q 001178 1008 LSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGS 1087 (1131)
Q Consensus 1008 ~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~ 1087 (1131)
.....+.. ++..|++++.++.|..+|..+|+.+......... ......+ .+..|+.++.+|.
T Consensus 268 --~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~---------~~~~~~~-----~~~~l~v~~~~g~ 329 (376)
T 3q7m_A 268 --GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR---------LLTSPVL-----YNGNLVVGDSEGY 329 (376)
T ss_dssp --CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS---------CCCCCEE-----ETTEEEEECTTSE
T ss_pred --CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC---------cccCCEE-----ECCEEEEEeCCCe
Confidence 23444443 4667888888999999999999987766522110 0111112 2358889999999
Q ss_pred EEEEecCCCcccccccc
Q 001178 1088 VKVIEPSETERKWGVAV 1104 (1131)
Q Consensus 1088 v~iW~~~~~~~~w~~~~ 1104 (1131)
|..+|..+++..|....
T Consensus 330 l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 330 LHWINVEDGRFVAQQKV 346 (376)
T ss_dssp EEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCcEEEEEec
Confidence 99999999999998765
No 242
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.96 E-value=0.0005 Score=87.12 Aligned_cols=571 Identities=9% Similarity=0.043 Sum_probs=282.0
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEecCCCc-----cceeeeeecCcCCeeEEEEecCC---CceEEEEE-c--CCCcEE
Q 001178 413 SRVAWSPDGNFIGVAFTKHLIHLYTYQGSND-----LCQSLEIDAHVGGVNDLAFSYPN---KQLCIVTC-G--DDKLIR 481 (1131)
Q Consensus 413 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~-----~~~~~~~~~h~~~V~~l~~s~d~---~~~~l~s~-s--~d~~i~ 481 (1131)
+|+++-.+| +|..|+..|.=.+|.+..... +....++ ..-++|.+++..... .. .++++ | .+|.++
T Consensus 330 ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL~ 406 (1158)
T 3ei3_A 330 ECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSLR 406 (1158)
T ss_dssp SEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEEE
T ss_pred cEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeEE
Confidence 567777666 778888888777777764321 1222222 345789998886432 22 24433 2 578899
Q ss_pred EEe--CCCceeEEec-CCccCeEEEeecc-cCCccEEEEEecCCeEEEEeCCCCceeEEecCC-----CceEEEEEEccC
Q 001178 482 VWD--LSGRKLFQFE-GHEAPVYSVCPHQ-KENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-----GLWCTTMLYSAD 552 (1131)
Q Consensus 482 iwd--~~~~~~~~~~-~h~~~v~~~~~~~-~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-----~~~v~~~~~s~~ 552 (1131)
+.. ..-+.+..+. ..-..++.+.... +....+|+.+..+.+ +++.+... ........ ...+.+-.+ .+
T Consensus 407 ~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l-~~ 483 (1158)
T 3ei3_A 407 IIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNV-AH 483 (1158)
T ss_dssp EEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEE-TT
T ss_pred EEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEc-CC
Confidence 887 4444333332 1224556654321 123357776666665 45544221 22222111 111211111 22
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCC
Q 001178 553 GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1131)
Q Consensus 553 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1131)
+ .++=.. ...|++.+...+..+..+....+..|...+.+ +..++.++ ++.+.++.+..++........ -.
T Consensus 484 ~-~ivQVt-----~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~-l~ 553 (1158)
T 3ei3_A 484 Q-QLIQIT-----SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTE-ME 553 (1158)
T ss_dssp T-EEEEEE-----SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEE-CS
T ss_pred C-eEEEEe-----cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccC-CC
Confidence 2 333332 44577777665556666654444456655554 34666665 678888888766433222211 12
Q ss_pred CCcceEEEcCC------CCEEEEEEC-CCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccccccc
Q 001178 633 PSLPRLRFNKE------GNLLVVTTA-DQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAER 705 (1131)
Q Consensus 633 ~~i~~v~~sp~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 705 (1131)
..|.|+++.|. +.++++|.. |++++|+++.+. +.+.... +.. ...|.
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l-~~~~~~~------------L~~-------~~~p~------ 607 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF-ELLHKEM------------LGG-------EIIPR------ 607 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC-CEEEEEE------------CCS-------SCCEE------
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC-CeEEEEE------------CCC-------CCCCc------
Confidence 36899998763 479999997 999999998643 1111000 000 00011
Q ss_pred ccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeeccc-CCceeEEEEcCCCCCCccceEEEEeecCCceEEE
Q 001178 706 VDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIV-DPLQCRVVAMPESTDSASKVARLLYTNSGIGILA 784 (1131)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 784 (1131)
.-.+..- ....+++.+-.||.+..+.++... .....+...+. ..++.=..+...|..-+.
T Consensus 608 ---------si~l~~~-----~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-----~~pv~L~~~~~~~~~~V~ 668 (1158)
T 3ei3_A 608 ---------SILMTTF-----ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-----TQPTVLRTFRSLSTTNVF 668 (1158)
T ss_dssp ---------EEEEEEE-----TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-----SSCCEEEEEESSSCEEEE
T ss_pred ---------EEEEEEe-----CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-----CCceEEEEEeeCCceeEE
Confidence 0000000 012345556666666555543211 11111111111 112222222222222222
Q ss_pred eeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCee-EEEecCC--CCEEEEEeCCeEEEEEC
Q 001178 785 LWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVP-CVALSKN--DSYVMSAGGGKVSLFNM 861 (1131)
Q Consensus 785 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~-~l~~s~d--g~~la~~~dg~i~vwd~ 861 (1131)
+.++.-..+|.- .+++....+ ....+. ...|+.. ..-++..+++.++|..+
T Consensus 669 a~s~rp~liy~~-----------------------~~~l~~s~l---~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i 722 (1158)
T 3ei3_A 669 ACSDRPTVIYSS-----------------------NHKLVFSNV---NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTI 722 (1158)
T ss_dssp EESSSCEEEEES-----------------------SSSEEEEEB---SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEE
T ss_pred EECCCCEEEEEc-----------------------CCceEEecc---ChHHhceEeccCcccCCCcEEEEcCCceEEEEe
Confidence 222222222210 111111111 111222 2234322 23455555666888876
Q ss_pred CCce--eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC-------------------------------------------
Q 001178 862 MNFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGMED------------------------------------------- 896 (1131)
Q Consensus 862 ~~~~--~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d------------------------------------------- 896 (1131)
.+.. .++++.- ...+..++++| ..+.++++..+
T Consensus 723 ~~~~~~~~~~ipL-~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1158)
T 3ei3_A 723 DEIQKLHIRTVPL-YESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSF 800 (1158)
T ss_dssp CCSSSEEEEEEEC-SSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------C
T ss_pred cccCCeeEEEEeC-CCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhc
Confidence 5432 2333332 35678888888 55544443311
Q ss_pred ------CcEEEEEeecceeEEeecc-cccCeeEEE---EccC-CCEEEEEe----------CCCcEEEEEcCCCceeeee
Q 001178 897 ------STIQIYNVRVDEVKTKLKG-HQKHITGLA---FSTN-LNILVSSG----------SDAQLIFWNTDTWEKRKSI 955 (1131)
Q Consensus 897 ------g~I~iwd~~~~~~~~~~~~-h~~~V~~l~---~s~d-g~~l~s~~----------~Dg~v~lwd~~~~~~~~~~ 955 (1131)
+.|++.|..+.+.+..+.- ....+.+++ |..+ ..+|+.|. ..|.|+++++..++. ...
T Consensus 801 g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL-~lv 879 (1158)
T 3ei3_A 801 GEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL-QTV 879 (1158)
T ss_dssp CCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE-EEE
T ss_pred CCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE-EEE
Confidence 2355666555555544321 122344443 4433 46788775 247899999974322 111
Q ss_pred eeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001178 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGV 1035 (1131)
Q Consensus 956 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~v 1035 (1131)
.... ..+++++++-- +.+|+++-...+++|++...+.++ ..... -..|..+.....|.++++|+.-..|.+
T Consensus 880 ~~~~----v~g~v~al~~~--~g~Lla~ig~~l~vy~l~~~~~L~-~~~~~--~~~i~~~~l~~~~~~I~vgD~~~Sv~~ 950 (1158)
T 3ei3_A 880 AEKE----VKGAVYSMVEF--NGKLLASINSTVRLYEWTTEKELR-TECNH--YNNIMALYLKTKGDFILVGDLMRSVLL 950 (1158)
T ss_dssp EEEE----ESSCEEEEEEE--TTEEEEEETTEEEEEEECTTSCEE-EEEEE--CCCSCEEEEEEETTEEEEEESSBCEEE
T ss_pred EEEE----cCCcCEEEeee--CCEEEEEcCCEEEEEECCCCceEE-EEeec--cccEEEEEEeccCCEEEEEEhhheEEE
Confidence 1111 11456665533 337888888999999998655433 11110 112333333345789999997777777
Q ss_pred EEC--CCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1036 FDA--DSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1036 wd~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
+.+ ..+++...-. ...+....++.|... ..++.+..+|+|.+.+...
T Consensus 951 ~~y~~~~~~L~~~a~-----------D~~~~~vta~~~ld~--~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 951 LAYKPMEGNFEEIAR-----------DFNPNWMSAVEILDD--DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEETTTTEEEEEEE-----------CCSCBCEEEEEEEET--TEEEEEETTSEEEEEEECT
T ss_pred EEEEcCCCeEEEEEe-----------ecccccEEEEEEEcc--CcEEEEcCCCcEEEEecCC
Confidence 554 3333322221 122344556666543 4788899999999998765
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.94 E-value=1.2e-09 Score=121.97 Aligned_cols=189 Identities=7% Similarity=-0.024 Sum_probs=112.9
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
++..+++++.|+.|..||..+|+.+.. +.. +.+.+..+..++. ++++++.|+.|+.|| .+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 577899999999999999999986653 333 4565666667777 678888999999999 68888776654422
Q ss_pred CeEEEeecccC-CccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC
Q 001178 499 PVYSVCPHQKE-NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1131)
Q Consensus 499 ~v~~~~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1131)
.... ..|.- .+..+++++.|+.|+.||.++++....+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~~--~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELVQ--ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHHT--TCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred cccc--cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 1110 01111 23578888999999999999988877665543 2345678888888876 889999999999
Q ss_pred eeeEEEecccCCceEEEEEeCCC---CEEEEEEcCCcEEEEEcCCCeEEEEEec
Q 001178 578 ALKRTYIGFRKKSAGVVQFDTTR---NRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
+.+..+.... .....+..+. ..+++++.||.|+.||..+++.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8776654321 1223333332 5678889999999999999998877664
No 244
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.93 E-value=0.00062 Score=86.28 Aligned_cols=175 Identities=11% Similarity=0.083 Sum_probs=106.8
Q ss_pred CeEEEEECCCceeEEEEeCC-CCCeeEEEE---eCCCCcEEEEEe----------CCCcEEEEEeecceeEEee-ccccc
Q 001178 854 GKVSLFNMMNFKVMTTFMSP-PPASTFLAF---HPQDNNIIAIGM----------EDSTIQIYNVRVDEVKTKL-KGHQK 918 (1131)
Q Consensus 854 g~i~vwd~~~~~~~~~~~~~-~~~i~~l~~---s~~~~~~la~g~----------~dg~I~iwd~~~~~~~~~~-~~h~~ 918 (1131)
..|++.|..+++.+..+.-. ...+.+++. ..+...++++|+ ..|.|++|++..+++.... ....+
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 45888998888887776533 334555553 332357898887 3578999999865433222 23467
Q ss_pred CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEE--EeCCC
Q 001178 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAI--YDGSK 995 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v--wd~~~ 995 (1131)
+|++++-- +|++|+.. ...|++|++...+...... .. . ..+..+.....+.++++|+ -..+.+ |+...
T Consensus 887 ~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~-~~----~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~ 957 (1158)
T 3ei3_A 887 AVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTEC-NH----Y-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPME 957 (1158)
T ss_dssp CEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEE-EE----C-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTT
T ss_pred cCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEe-ec----c-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC
Confidence 89998754 35444444 3689999998654322111 10 1 1233334444577888876 334444 55444
Q ss_pred cccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 001178 996 MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 996 ~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
++....- .+.....++++.|-.++ .++.++.+|.+.+.....
T Consensus 958 ~~L~~~a--~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 958 GNFEEIA--RDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TEEEEEE--ECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred CeEEEEE--eecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 4333322 22336789999998665 667788999999997764
No 245
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.93 E-value=7e-08 Score=105.67 Aligned_cols=238 Identities=16% Similarity=0.139 Sum_probs=150.9
Q ss_pred EEe--cCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccC-CCCCEEEEEEcCCCCEEEEEeCC
Q 001178 354 DFH--PFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD-SSISVSRVAWSPDGNFIGVAFTK 430 (1131)
Q Consensus 354 ~fs--pdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~spdg~~las~~~d 430 (1131)
+++ ++++++++.|..++.|.|+|+.+..... ...+..+ ...+... -...-..+..+||| .++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p-~~~k~ie--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP-KIIKVIE--------PEEVKKVSGYSRLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC-EEEEEEC--------HHHHHHHHCEEEEEEEEECSSC-EEEEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCc-eeeeeec--------hhhcccccCCCcccceeECCCe-EEEEcCCC
Confidence 447 8999988899999999999997542110 0011110 0001101 11234567888999 66666555
Q ss_pred ------CeEEEEEecCCCccceeeeeecCc-CCeeEEEEecCCCceEEEEEc-------------------CCCcEEEEe
Q 001178 431 ------HLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCG-------------------DDKLIRVWD 484 (1131)
Q Consensus 431 ------~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~l~~s~d~~~~~l~s~s-------------------~d~~i~iwd 484 (1131)
+.|.+.|.++.+.+.... ..... .--..+.|+|+++ .+++.. .+.+|.+||
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred cCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 789999999987654321 12222 2234688999999 677764 478999999
Q ss_pred -CCCceeEEecCC--ccCeEEEeecccCCccEEEEEe------cCCeEEEEeCCCCceeE--E--ecCC-----------
Q 001178 485 -LSGRKLFQFEGH--EAPVYSVCPHQKENIHFIFSTA------VDGKIKAWLYDNVGSRV--D--YDAP----------- 540 (1131)
Q Consensus 485 -~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s------~dg~i~~wd~~~~~~~~--~--~~~~----------- 540 (1131)
.+++.+.++..- ......+.|..++++++++.++ .+++|.+|..+.+.-.. . +...
T Consensus 235 ~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~ 314 (462)
T 2ece_A 235 LRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILK 314 (462)
T ss_dssp TTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGG
T ss_pred CCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccc
Confidence 667667766542 2344566665567778877776 46688877665422111 1 1110
Q ss_pred -----CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC---CeeeEEEecccC---------C----ceEEEEEeCC
Q 001178 541 -----GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE---GALKRTYIGFRK---------K----SAGVVQFDTT 599 (1131)
Q Consensus 541 -----~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~---------~----~v~~~~~s~~ 599 (1131)
......+.+++||++|.++.. +.+.|.++|+.. .+++..+...-. . .-..+.++||
T Consensus 315 ~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD 391 (462)
T 2ece_A 315 PFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD 391 (462)
T ss_dssp GGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred ccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence 234678999999999998875 467999999853 345555443200 0 2466899999
Q ss_pred CCEEEEEE
Q 001178 600 RNRILAAG 607 (1131)
Q Consensus 600 ~~~l~~~~ 607 (1131)
|++|+++.
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99999886
No 246
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.90 E-value=8.2e-10 Score=123.41 Aligned_cols=191 Identities=14% Similarity=0.143 Sum_probs=109.8
Q ss_pred CCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCC
Q 001178 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP 965 (1131)
Q Consensus 886 ~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~ 965 (1131)
++..+++++.||.|+.||..+|+.+-.+.. +.+.+..+..++..+++++.|+.|+.||..+++..............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~- 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ- 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence 456788899999999999999999888776 56666667778888888899999999999887754332211100000
Q ss_pred CCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceee
Q 001178 966 VGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC 1045 (1131)
Q Consensus 966 ~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1045 (1131)
....+..++..++.+.++.++.||..+|+.+..+..+ . ...++|++..+++++.|+.|+.||..+|+.+.
T Consensus 85 ---~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~---~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 85 ---ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA---F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp ---TCSCC-----CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred ---cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCC---C----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 0111123444444456899999999999988776544 1 23567788999999999999999999999877
Q ss_pred EecCCccccCCCCCCCCccccEEEEEcCC--CCCeEEEEecCCcEEEEecCCCccccccc
Q 001178 1046 RIAPSAYMSQASPNSSQTVFPLVVTSHPQ--EPNQLAVGLTDGSVKVIEPSETERKWGVA 1103 (1131)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~v~~~~v~~~p~--~~~~l~s~~~Dg~v~iW~~~~~~~~w~~~ 1103 (1131)
.+...... . ..+.+. ....+++++.||.|+.||..+++..|...
T Consensus 155 ~~~~~~~~--------~------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 155 NATYFDYA--------A------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEEEEC--------C------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred eEeccccc--------C------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 66532110 0 011110 11467788999999999999999999865
No 247
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.90 E-value=0.00042 Score=82.22 Aligned_cols=209 Identities=9% Similarity=-0.047 Sum_probs=130.4
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
.-..+..++|++.+..++.+-..++.|..+++....... +..........+|+.+.+..|.
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY 95 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLY 95 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEE
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEE
Confidence 345789999999877777777778999999987643221 1112224567899998766554
Q ss_pred EE-eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEE-cCCCcEEEEeCCCceeEEecCCccCeEEE
Q 001178 426 VA-FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC-GDDKLIRVWDLSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 426 s~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~h~~~v~~~ 503 (1131)
.+ ...+.|.+.++++... .. -+...-.....|++.|.... ++++- +..+.|...+..|.....+...-.....+
T Consensus 96 ~tD~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~Gl 171 (628)
T 4a0p_A 96 WADTGTNRIEVSKLDGQHR-QV--LVWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGL 171 (628)
T ss_dssp EEETTTTEEEEEETTSTTC-EE--EECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEE
T ss_pred EEECCCCEEEEEecCCCcE-EE--EEeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceE
Confidence 44 5567899999876432 11 12233445789999986654 34443 33567777777777665554445567888
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
++.+.. +.+.++-...+.|...+++...... +.........+++.. ..++.+.. ..+.|...|..+|+....+
T Consensus 172 alD~~~-~~LY~aD~~~~~I~~~d~dG~~~~v-~~~~l~~P~glav~~--~~ly~tD~---~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 172 TIDYAK-RRLYWTDLDTNLIESSNMLGLNREV-IADDLPHPFGLTQYQ--DYIYWTDW---SRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEETTT-TEEEEEETTTTEEEEEETTSCSCEE-EEECCSCEEEEEEET--TEEEEEET---TTTEEEEEETTTCCSCEEE
T ss_pred EEcccc-CEEEEEECCCCEEEEEcCCCCceEE-eeccCCCceEEEEEC--CEEEEecC---CCCEEEEEECCCCCceEEE
Confidence 886533 2444455667889999987654432 222233445677654 34444432 2667888887777655555
Q ss_pred e
Q 001178 584 I 584 (1131)
Q Consensus 584 ~ 584 (1131)
.
T Consensus 245 ~ 245 (628)
T 4a0p_A 245 Q 245 (628)
T ss_dssp E
T ss_pred e
Confidence 4
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.86 E-value=1.2e-07 Score=107.81 Aligned_cols=242 Identities=10% Similarity=0.036 Sum_probs=165.1
Q ss_pred CCCCEEEEEe--CCeEEEEECCCceeEEEEeCCC-CCeeEEEE-e-CCCCcEEEEEe------------------CCCcE
Q 001178 843 KNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPP-PASTFLAF-H-PQDNNIIAIGM------------------EDSTI 899 (1131)
Q Consensus 843 ~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~-s-~~~~~~la~g~------------------~dg~I 899 (1131)
+||+++.+.. ++.|.+.|+.+.++...+..+. ..+..+++ + | ++.++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 3999999887 4779999999999988665433 45888898 5 8 777777774 34579
Q ss_pred EEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCC--------------------------------------cE
Q 001178 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA--------------------------------------QL 941 (1131)
Q Consensus 900 ~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg--------------------------------------~v 941 (1131)
.++|.++.+...++.--. .-..++++|||+++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999988887776322 456788999999998887543 35
Q ss_pred EEEEcCC--Cce-eeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCcc------------cceeeec
Q 001178 942 IFWNTDT--WEK-RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKME------------CIRQWVP 1004 (1131)
Q Consensus 942 ~lwd~~~--~~~-~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~------------~~~~~~~ 1004 (1131)
.+.|..+ ++. ...... . .....+.++|||++++++. +..+.++|+.+.+ .+.....
T Consensus 257 ~VID~~~~~~~~~~~~Ipv--g-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI--A-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE--E-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred EEEeCcccCCceeEEEEec--C-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 6666665 221 111111 1 3456799999999999875 7889999999763 2222222
Q ss_pred CCCCCCCeEEEEEccCCCEEEE-EecCCcEEEEECCC----------CceeeEecCCccccCCCCCCCCccccEEEEEcC
Q 001178 1005 QDVLSSPISSAAYSCNSQLIYA-TFTDGSIGVFDADS----------LRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHP 1073 (1131)
Q Consensus 1005 ~~~~~~~v~~i~~s~dg~~l~s-~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p 1073 (1131)
......++|++|| ++.+ ...|+.|.+||+++ ...+.++..+- .+.| ...+..+..+|
T Consensus 330 ----G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y-qpGh------~~~~~g~t~~~ 397 (595)
T 1fwx_A 330 ----GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY-QPGH------LKTVMGETLDA 397 (595)
T ss_dssp ----CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS-CEEE------EEETTTTSTTC
T ss_pred ----CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc-cccc------ceeccceEeCC
Confidence 4578899999999 5554 44899999999987 55666665432 1111 00011123355
Q ss_pred CCCCeEEEEecC--CcE-----------EEEecCCCccccccccCC
Q 001178 1074 QEPNQLAVGLTD--GSV-----------KVIEPSETERKWGVAVPV 1106 (1131)
Q Consensus 1074 ~~~~~l~s~~~D--g~v-----------~iW~~~~~~~~w~~~~p~ 1106 (1131)
|+++|+++..= .++ .++|++.++++-..-.|.
T Consensus 398 -DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~ 442 (595)
T 1fwx_A 398 -TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPT 442 (595)
T ss_dssp -CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEE
T ss_pred -CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEcC
Confidence 67788777651 234 889998888875555554
No 249
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.79 E-value=1.1e-05 Score=85.31 Aligned_cols=222 Identities=11% Similarity=0.053 Sum_probs=143.1
Q ss_pred CCEEEEEEcCCCCEEEEE-eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCc
Q 001178 410 ISVSRVAWSPDGNFIGVA-FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR 488 (1131)
Q Consensus 410 ~~V~~~~~spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 488 (1131)
..+..++|++++..|..+ ..++.|.+++..++.. .. .+.........+++.+++.. ++++....+.|.+++..+.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~--~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TT--IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EE--EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EE--EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 357899999976655554 4568999999976542 11 12222346789999998664 5566667789999996665
Q ss_pred eeEEecC-CccCeEEEeecccCCccEEEEEec---CCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCC
Q 001178 489 KLFQFEG-HEAPVYSVCPHQKENIHFIFSTAV---DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKE 564 (1131)
Q Consensus 489 ~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 564 (1131)
....+.. .......+++++.. ..|+.+.. .+.|..++++.................+++++++..|+.+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~--g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEeeCC--CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 4433322 22456788886532 34444433 468888888654333222233346789999999888877753
Q ss_pred CCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
..+.|.++|.........+... . ....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~-~-~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred CCCEEEEEecCCCceEEEecCC-C-CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence 3678999998755443333321 2 33455554 45566555 56899999999999888876432 123577888887
Q ss_pred CC
Q 001178 644 GN 645 (1131)
Q Consensus 644 ~~ 645 (1131)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.76 E-value=2.5e-06 Score=102.94 Aligned_cols=193 Identities=12% Similarity=0.156 Sum_probs=131.1
Q ss_pred CCeEEEEECCCceeEEEEeCCC-------------------------------CCeeEEEEeCCCCcEEEEEeCCCc---
Q 001178 853 GGKVSLFNMMNFKVMTTFMSPP-------------------------------PASTFLAFHPQDNNIIAIGMEDST--- 898 (1131)
Q Consensus 853 dg~i~vwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~~~~~la~g~~dg~--- 898 (1131)
+|.|..+|..+++.+-++.... .....+++.| ...+++.++.++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 4678888888888887765311 0112468888 6677888877763
Q ss_pred ----------------EEEEEeecceeEEeecc--cc-------cCeeEEEEccCCC---EEEEEeCCCcEEEEEcCCCc
Q 001178 899 ----------------IQIYNVRVDEVKTKLKG--HQ-------KHITGLAFSTNLN---ILVSSGSDAQLIFWNTDTWE 950 (1131)
Q Consensus 899 ----------------I~iwd~~~~~~~~~~~~--h~-------~~V~~l~~s~dg~---~l~s~~~Dg~v~lwd~~~~~ 950 (1131)
|..+|..+|+.+-.++. |. .+.....+..+|+ .++.++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 99999999998876653 32 2333333444675 68899999999999999988
Q ss_pred eeeeeeeec---------CCC--------C-------------CCCCceEEEEcCCCcEEEEE-----------------
Q 001178 951 KRKSIAIQL---------PAG--------K-------------LPVGETRVQFHSDQVRLLVN----------------- 983 (1131)
Q Consensus 951 ~~~~~~~~~---------~~~--------~-------------~~~~v~~v~~s~d~~~l~~~----------------- 983 (1131)
.+....... ..+ . -...-..++++|+...+++.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 763221110 000 0 00011236788887776642
Q ss_pred --------------------eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCce
Q 001178 984 --------------------HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL 1043 (1131)
Q Consensus 984 --------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1043 (1131)
.++.|+.||+.+++.+-..... .+.....+...+.++++++.|+.++.||..+|+.
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC----CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 1277999999999988776543 2334445556788999999999999999999999
Q ss_pred eeEecCC
Q 001178 1044 RCRIAPS 1050 (1131)
Q Consensus 1044 ~~~~~~~ 1050 (1131)
+.++...
T Consensus 492 l~~~~~~ 498 (668)
T 1kv9_A 492 LWQFEAQ 498 (668)
T ss_dssp EEEEECS
T ss_pred heEecCC
Confidence 9888753
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.72 E-value=1.7e-06 Score=89.26 Aligned_cols=202 Identities=12% Similarity=0.073 Sum_probs=140.5
Q ss_pred CCeeEEEecCCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCC-CeeEEEEeCCCCcEEEEEeCCCcEEEEEeeccee
Q 001178 834 DVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV 909 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~ 909 (1131)
.....++|++|+.+.++.+ ++.|.++|+.+++.+..+..... ....+++. ++++.++.-.++.+.++|..+.+.
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 3467899999875555543 47899999999999998764322 23355555 456666666789999999999999
Q ss_pred EEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeE
Q 001178 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQL 988 (1131)
Q Consensus 910 ~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i 988 (1131)
+..+...... ...+++||+.|+++..++.|.++|..+.+.......... +..-.....+.|. +|...+.. .++.|
T Consensus 99 ~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~~~~nele~~-dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 99 IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRVIRLNELEYI-NGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-CcccccceeEEEE-CCEEEEecCCCCeE
Confidence 8887533121 244666888777777788999999999776655544321 1111234567777 66544443 37899
Q ss_pred EEEeCCCcccceeeecCC----------CCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCC
Q 001178 989 AIYDGSKMECIRQWVPQD----------VLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSL 1041 (1131)
Q Consensus 989 ~vwd~~~~~~~~~~~~~~----------~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~ 1041 (1131)
.+.|..+++.+..+.... ....-.+.|+|+|+++.|++++ ..+.+++.++...
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 999999999888875420 0123568999999998666665 6788998887654
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.70 E-value=5.3e-06 Score=100.08 Aligned_cols=109 Identities=10% Similarity=0.064 Sum_probs=72.2
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCce----------E-EEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW----------C-TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~----------v-~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
..++.++.++.|..+|..+++.+..+...... + ..+++ .+..+++++. ++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL----DGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcC----CCEEEEEECCCCCEe
Confidence 46777888899999999998888876543211 0 11222 3456666654 889999999999998
Q ss_pred EEEecccC---CceEE-EEEeCCCCEEEEEEc------CCcEEEEEcCCCeEEEEEec
Q 001178 581 RTYIGFRK---KSAGV-VQFDTTRNRILAAGE------DNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 581 ~~~~~~~~---~~v~~-~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 628 (1131)
..+..... ..+.+ ..+ .+..++++.. +|.|+.+|..+|+.+.....
T Consensus 141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 88765321 01111 111 1345666543 58999999999999887764
No 253
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.70 E-value=9.5e-06 Score=85.87 Aligned_cols=204 Identities=9% Similarity=-0.025 Sum_probs=135.0
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEE
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~ 911 (1131)
..+..+++++++..|..+. .+.|..++..+......+.........++++++++.++++-...+.|.+++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 3467899999887777776 58899999987655444433335789999999445566666667889999986433222
Q ss_pred eecccccCeeEEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CC
Q 001178 912 KLKGHQKHITGLAFSTNLNILVSSGS---DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ET 986 (1131)
Q Consensus 912 ~~~~h~~~V~~l~~s~dg~~l~s~~~---Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~ 986 (1131)
...........++++|++..|..+.. .+.|..++++..... . +... .......+++++++..|.++. .+
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~-~--~~~~---~~~~P~gia~d~~~~~lyv~d~~~~ 189 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-I--LAQD---NLGLPNGLTFDAFSSQLCWVDAGTH 189 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-E--EECT---TCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE-E--EEEC---CCCCCcEEEEcCCCCEEEEEECCCC
Confidence 22222245689999997666554443 367888888753221 1 1111 114567899999988777654 57
Q ss_pred eEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecC
Q 001178 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 987 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
.|.+++.........+.. ......+++. +..|+.+. ..+.|.++|..+++.+..+..
T Consensus 190 ~I~~~~~~g~~~~~~~~~----~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 190 RAECLNPAQPGRRKVLEG----LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp EEEEEETTEEEEEEEEEC----CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred EEEEEecCCCceEEEecC----CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 899999986543333222 2344667654 55566555 568999999999998888753
No 254
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.69 E-value=2.1e-06 Score=88.55 Aligned_cols=223 Identities=12% Similarity=0.056 Sum_probs=147.9
Q ss_pred ceeEEEEeCCC-CCeeEEEEeCCCCcEEEEEeC--CCcEEEEEeecceeEEeeccccc-CeeEEEEccCCCEEEEEeCCC
Q 001178 864 FKVMTTFMSPP-PASTFLAFHPQDNNIIAIGME--DSTIQIYNVRVDEVKTKLKGHQK-HITGLAFSTNLNILVSSGSDA 939 (1131)
Q Consensus 864 ~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~--dg~I~iwd~~~~~~~~~~~~h~~-~V~~l~~s~dg~~l~s~~~Dg 939 (1131)
.+.+.++.... .....++|++ ++.++++.+. ++.|.++|+.+++.+..+.-... ....+++.. ++..++.-.++
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~ 86 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCS
T ss_pred ceEEEEEECCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCC
Confidence 35566665322 2468999999 6766665543 57999999999998887652221 223455542 24445555688
Q ss_pred cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCCC--CCCCeEEEE
Q 001178 940 QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDV--LSSPISSAA 1016 (1131)
Q Consensus 940 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~~--~~~~v~~i~ 1016 (1131)
.+.++|..+.+........ . . ....+++||+.|+++. ++.+.++|..+.+.+..+..... .-..++.+.
T Consensus 87 ~v~viD~~t~~v~~~i~~g--~-~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQ--M-K-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp EEEEEETTTTEEEEEEECC--S-S-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEEEECCCCcEEEEEECC--C-C-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence 9999999998765544322 0 1 1234667888777754 67899999999888887764311 012467888
Q ss_pred EccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCC-CCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQA-SPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1017 ~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
|. +|+..+....++.|.+.|..+++.+..+......+.. .........+..|+|+|....+++++...++|.+-++..
T Consensus 159 ~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 159 YI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 88 7755554446789999999999999999753211000 000111234457999997777888888999999999876
Q ss_pred Cc
Q 001178 1096 TE 1097 (1131)
Q Consensus 1096 ~~ 1097 (1131)
.+
T Consensus 238 ~~ 239 (266)
T 2iwa_A 238 VR 239 (266)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 255
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.69 E-value=0.0026 Score=78.42 Aligned_cols=529 Identities=11% Similarity=0.044 Sum_probs=270.8
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 426 (1131)
...|.++....+|. |-.|+.+| +..||..+.+.... .......|.++.. .+|. |-.
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g~-lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGDT-LWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETTE-EEE
T ss_pred CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCCc-EEE
Confidence 34689988888885 55566554 78999876543210 0011235777754 3554 445
Q ss_pred EeCCCeEEEEEecCCCccceeeee-e-cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCC------cc
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLEI-D-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH------EA 498 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~-~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h------~~ 498 (1131)
++.+ -+..||..+++. ...... . -....|.++....+|. +.+ |+.+ -+..+|........+... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 5555 578888776542 111000 0 1134688888887887 333 3333 577788433333322211 12
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
.|.++.. +.++..|..|+. +-+..++..+.............|.++....+|...+.. ++-+.+++..+++
T Consensus 192 ~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT------~~Gl~~~~~~~~~ 262 (758)
T 3ott_A 192 FVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT------DNGLYVYHNDTTP 262 (758)
T ss_dssp CEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE------TTEEEEECCTTSC
T ss_pred eeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe------CCceeEEecCCCc
Confidence 3777765 333445555654 457778876654322111223458888888888776654 2348888877665
Q ss_pred eeEEEec------ccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec-----cCCCCCcceEEEcCCCCEE
Q 001178 579 LKRTYIG------FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA-----EGGLPSLPRLRFNKEGNLL 647 (1131)
Q Consensus 579 ~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~i~~v~~sp~~~~l 647 (1131)
....... .....|.++....++. |..|+..| +.++.... ....... ......|.++....+|.+.
T Consensus 263 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW 338 (758)
T 3ott_A 263 LQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYW 338 (758)
T ss_dssp CEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEE
T ss_pred EEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEE
Confidence 4322111 1223577887777665 55565666 55543322 1111111 0111246777777777655
Q ss_pred EEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccC
Q 001178 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1131)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 727 (1131)
+ |+.+| +..++..++... .+. .+.+.
T Consensus 339 i-Gt~~G-l~~~~~~~~~~~--~~~----------------------~~~~~---------------------------- 364 (758)
T 3ott_A 339 F-GGANG-LIRFTDPAGERH--DAI----------------------WYRMG---------------------------- 364 (758)
T ss_dssp E-EETTE-EEEESCTTSSCC--CCE----------------------EECTT----------------------------
T ss_pred E-eeCCc-ceeecccccccc--eeE----------------------EeccC----------------------------
Confidence 4 45554 445543322000 000 00000
Q ss_pred CCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCcc
Q 001178 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1131)
Q Consensus 728 ~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1131)
. . ...-....|.++....+|...+ ++ ++-+..|+.......
T Consensus 365 --------~--~----------------------~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~----- 405 (758)
T 3ott_A 365 --------D--K----------------------TYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFI----- 405 (758)
T ss_dssp --------C--S----------------------SSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEE-----
T ss_pred --------C--c----------------------CCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEE-----
Confidence 0 0 0000224566777667776444 33 345666654332110
Q ss_pred ceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCc-----eeE---EEEe----CCCC
Q 001178 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNF-----KVM---TTFM----SPPP 875 (1131)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~-----~~~---~~~~----~~~~ 875 (1131)
.+..... ........|.++...++|++.+....+.|.++|..+. ... ..+. ....
T Consensus 406 -------~~~~~~~------~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 472 (758)
T 3ott_A 406 -------HYNIVDN------TGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGM 472 (758)
T ss_dssp -------EEEEECC------C--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCS
T ss_pred -------EeecCCC------cCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccc
Confidence 0000000 0000235678888888887665444667888886531 111 1221 1223
Q ss_pred CeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecc---cccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 001178 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG---HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952 (1131)
Q Consensus 876 ~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~---h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~ 952 (1131)
.|.++...+ ++.+.+.++..+-|..+|..+++....... ....+.++....+|.+.+.. ..| +..++..+.+..
T Consensus 473 ~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~~~~~~ 549 (758)
T 3ott_A 473 FINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPKDESQQ 549 (758)
T ss_dssp CEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC--CCCC
T ss_pred eeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecCCCceE
Confidence 588898888 677665334445588889877765432211 13467888888888776643 444 888887664422
Q ss_pred eeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEc-cCCCEEEEEecCC
Q 001178 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYS-CNSQLIYATFTDG 1031 (1131)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s-~dg~~l~s~~~dg 1031 (1131)
.. . ..+-....+.++... +|.+. .+++..+..++..+.+... +... ...+....+. ++|. |..|+.+|
T Consensus 550 ~~---~-~~gl~~~~i~~i~~~-~g~lW-i~t~~Gl~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~G~-l~fG~~~G 618 (758)
T 3ott_A 550 SI---S-FGSFSNNEILSMTCV-KNSIW-VSTTNGLWIIDRKTMDARQ-QNMT---NKRFTSLLFDPKEDC-VYLGGADG 618 (758)
T ss_dssp BC---C-CCC---CCEEEEEEE-TTEEE-EEESSCEEEEETTTCCEEE-C--C---CCCCSEEEEETTTTE-EEEECBSE
T ss_pred Ee---c-ccCCCccceEEEEEC-CCCEE-EECCCCeEEEcCCCceeEE-ecCC---CCceeeeEEECCCCc-EEEecCCc
Confidence 11 1 111112457777664 56544 4446678889988765432 2111 2233344444 4565 55566666
Q ss_pred cEEEEECC
Q 001178 1032 SIGVFDAD 1039 (1131)
Q Consensus 1032 ~i~vwd~~ 1039 (1131)
- ..++.+
T Consensus 619 l-~~f~p~ 625 (758)
T 3ott_A 619 F-GISHSN 625 (758)
T ss_dssp E-EEEEC-
T ss_pred e-EEEChh
Confidence 4 455554
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.68 E-value=1.8e-05 Score=92.97 Aligned_cols=192 Identities=11% Similarity=0.126 Sum_probs=123.0
Q ss_pred CCeEEEEECCCceeEEEEeCCCCCe--------------------------------------eEEEEeCCCCcEEEEEe
Q 001178 853 GGKVSLFNMMNFKVMTTFMSPPPAS--------------------------------------TFLAFHPQDNNIIAIGM 894 (1131)
Q Consensus 853 dg~i~vwd~~~~~~~~~~~~~~~~i--------------------------------------~~l~~s~~~~~~la~g~ 894 (1131)
++.|+.+|..+++.+-++....... ..+++.+ ...++..++
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~ 259 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGT 259 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeC
Confidence 5788888888888877765322110 1356667 555666676
Q ss_pred CC----------------CcEEEEEeecceeEEeecccc----------cCeeEEEEc-cCC---CEEEEEeCCCcEEEE
Q 001178 895 ED----------------STIQIYNVRVDEVKTKLKGHQ----------KHITGLAFS-TNL---NILVSSGSDAQLIFW 944 (1131)
Q Consensus 895 ~d----------------g~I~iwd~~~~~~~~~~~~h~----------~~V~~l~~s-~dg---~~l~s~~~Dg~v~lw 944 (1131)
.+ +.|.-+|.++|+.+-.++... .++. +... .+| ..++.++.+|.+.++
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence 55 379999999998876655321 1121 2222 467 467788999999999
Q ss_pred EcCCCceeeeeeeec----------CCCC-----------------------CCCCceEEEEcCCCcEEEEE--------
Q 001178 945 NTDTWEKRKSIAIQL----------PAGK-----------------------LPVGETRVQFHSDQVRLLVN-------- 983 (1131)
Q Consensus 945 d~~~~~~~~~~~~~~----------~~~~-----------------------~~~~v~~v~~s~d~~~l~~~-------- 983 (1131)
|..+++.+....... ..+. -...-..++++|+..++++.
T Consensus 339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 418 (599)
T 1w6s_A 339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW 418 (599)
T ss_dssp ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence 999988765443211 0000 00111246777776666542
Q ss_pred --------------------------------eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001178 984 --------------------------------HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG 1031 (1131)
Q Consensus 984 --------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg 1031 (1131)
..+.+..||+.+++.+-..... .++.+-.+...+.+++.++.|+
T Consensus 419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagg~vf~gt~dg 494 (599)
T 1w6s_A 419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----FAVWGGTMATAGDLVFYGTLDG 494 (599)
T ss_dssp EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTS
T ss_pred ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC----CCccCcceEecCCEEEEECCCC
Confidence 2367888999998877665432 1222212334677888899999
Q ss_pred cEEEEECCCCceeeEecCC
Q 001178 1032 SIGVFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 1032 ~i~vwd~~~~~~~~~~~~~ 1050 (1131)
.++.||.++|+.+.++...
T Consensus 495 ~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 495 YLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp EEEEEETTTCCEEEEEECS
T ss_pred eEEEEECCCCCEEEEeeCC
Confidence 9999999999999888643
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.61 E-value=5e-06 Score=84.40 Aligned_cols=211 Identities=9% Similarity=0.107 Sum_probs=137.7
Q ss_pred eeEEEEeCCCCC--eeEEEEeCCCCcEEEEEeCCC--cEEEEEeecceeEEeecccccCeeEEEEccCCCEEEE-EeCCC
Q 001178 865 KVMTTFMSPPPA--STFLAFHPQDNNIIAIGMEDS--TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVS-SGSDA 939 (1131)
Q Consensus 865 ~~~~~~~~~~~~--i~~l~~s~~~~~~la~g~~dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s-~~~Dg 939 (1131)
+.+.++. |... ...+.|+ ++.++.+++.+| .|+++|+++++.+..+.-.. ........++++.|.. .-.++
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCC
Confidence 4555664 4433 4889998 457777777766 89999999999888876433 3444333334555444 44588
Q ss_pred cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCCC--CCCCeEEEE
Q 001178 940 QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDV--LSSPISSAA 1016 (1131)
Q Consensus 940 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~~--~~~~v~~i~ 1016 (1131)
.+.+||.++.+......... ....+++|++.|+.++ ++.|.++|..+.+.+..+..... .-..++.+.
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~---------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDG---------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp EEEEEETTTCCEEEEEECSS---------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred EEEEEECccCcEEEEEECCC---------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 99999999988766554321 1234446777777754 67899999999998888765310 013455677
Q ss_pred EccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEE
Q 001178 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVK 1089 (1131)
Q Consensus 1017 ~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~ 1089 (1131)
|. +|+..+..-.++.|.+.|..+|+.+..+......+.........-..-.|+|+|....++++|-.=-.++
T Consensus 179 ~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ 250 (262)
T 3nol_A 179 WV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVF 250 (262)
T ss_dssp EE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred EE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceE
Confidence 76 7765555546889999999999999999875433221100111123356999997666776665544433
No 258
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.60 E-value=5e-06 Score=84.40 Aligned_cols=187 Identities=11% Similarity=0.104 Sum_probs=129.2
Q ss_pred CCCeeEEEecCCCCEEEEEe-CC--eEEEEECCCceeEEEEeCCCCCeeE--EEEeCCCCcEEEEEeCCCcEEEEEeecc
Q 001178 833 EDVVPCVALSKNDSYVMSAG-GG--KVSLFNMMNFKVMTTFMSPPPASTF--LAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~--l~~s~~~~~~la~g~~dg~I~iwd~~~~ 907 (1131)
......+.|+ ++.+..+.+ +| .|+++|+++++.+.++.... .... +++. ++++.+..-.++.+.+||..+.
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTC
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccC
Confidence 3445788898 666555555 55 79999999999999887543 3333 4443 4556665667899999999999
Q ss_pred eeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCC
Q 001178 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HET 986 (1131)
Q Consensus 908 ~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~ 986 (1131)
+.+.++.... ....+++|++.|+.+..++.|.++|..+.+.......... +..-..+..+.+. +|+..+.. .++
T Consensus 118 ~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~-g~~~~~lNELe~~-~G~lyan~w~~~ 192 (262)
T 3nol_A 118 RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAH-GEELPELNELEWV-DGEIFANVWQTN 192 (262)
T ss_dssp CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccC-CccccccceeEEE-CCEEEEEEccCC
Confidence 9998887432 2234446787777777688899999999877665544321 1111223346665 66544444 478
Q ss_pred eEEEEeCCCcccceeeecCC---------CCCCCeEEEEEccCCCEEEEEe
Q 001178 987 QLAIYDGSKMECIRQWVPQD---------VLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 987 ~i~vwd~~~~~~~~~~~~~~---------~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
.|.+.|..+++.+..+.... ....-.+.|||+|+++.|++++
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999999888876421 1123568999999999888888
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.60 E-value=1.7e-05 Score=93.52 Aligned_cols=110 Identities=8% Similarity=0.076 Sum_probs=70.7
Q ss_pred cEEEEEec-CCeEEEEeC-CCCceeEEecCCCce-----------EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 512 HFIFSTAV-DGKIKAWLY-DNVGSRVDYDAPGLW-----------CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 512 ~~l~s~s~-dg~i~~wd~-~~~~~~~~~~~~~~~-----------v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
..++.++. ++.|.-+|. ++++.+..+...... ...+++ ++..+++++. ++.|+.+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA----NGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC----CCEEEEEECCCCC
Confidence 35666666 788888898 888887766543210 011222 3456666654 7899999999999
Q ss_pred eeEEEecccC---CceE-EEEEeCCCCEEEEEEc------CCcEEEEEcCCCeEEEEEecc
Q 001178 579 LKRTYIGFRK---KSAG-VVQFDTTRNRILAAGE------DNQIKFWDMDNVNMLTSTEAE 629 (1131)
Q Consensus 579 ~~~~~~~~~~---~~v~-~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~ 629 (1131)
.+..+..... ..+. ...+ .+..+++++. ++.|+.+|..+|+.+......
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 8877653220 0111 1111 2346666655 799999999999998877643
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.59 E-value=2.6e-05 Score=91.84 Aligned_cols=192 Identities=12% Similarity=0.080 Sum_probs=124.2
Q ss_pred CCeEEEEECCCceeEEEEeCCCCC--------------------------------------eeEEEEeCCCCcEEEEEe
Q 001178 853 GGKVSLFNMMNFKVMTTFMSPPPA--------------------------------------STFLAFHPQDNNIIAIGM 894 (1131)
Q Consensus 853 dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------------i~~l~~s~~~~~~la~g~ 894 (1131)
++.|..+|..+++.+-++...... -..+++.+ ...++..++
T Consensus 175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~ 253 (571)
T 2ad6_A 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGS 253 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEEC
Confidence 578888888888888776532110 02356777 444555555
Q ss_pred CC----------------CcEEEEEeecceeEEeecc--cc--------cCeeEEEEccCCC---EEEEEeCCCcEEEEE
Q 001178 895 ED----------------STIQIYNVRVDEVKTKLKG--HQ--------KHITGLAFSTNLN---ILVSSGSDAQLIFWN 945 (1131)
Q Consensus 895 ~d----------------g~I~iwd~~~~~~~~~~~~--h~--------~~V~~l~~s~dg~---~l~s~~~Dg~v~lwd 945 (1131)
.+ +.|..+|..+|+.+-.++. |. .++. +....+|+ .++.++.+|.+.++|
T Consensus 254 g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD 332 (571)
T 2ad6_A 254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLN 332 (571)
T ss_dssp CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEE
T ss_pred CCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEE
Confidence 32 3589999999988766542 21 2221 22234674 577888999999999
Q ss_pred cCCCceeeeeeeecCC-------CCCC--------------------------CCceEEEEcCCCcEEEEEe--------
Q 001178 946 TDTWEKRKSIAIQLPA-------GKLP--------------------------VGETRVQFHSDQVRLLVNH-------- 984 (1131)
Q Consensus 946 ~~~~~~~~~~~~~~~~-------~~~~--------------------------~~v~~v~~s~d~~~l~~~~-------- 984 (1131)
..+++.+......... .... ..-..++++|+..++++..
T Consensus 333 ~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~ 412 (571)
T 2ad6_A 333 RENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWE 412 (571)
T ss_dssp TTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred CCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccc
Confidence 9998865543321100 0000 0013467888877776632
Q ss_pred ------------------------------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001178 985 ------------------------------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIG 1034 (1131)
Q Consensus 985 ------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~ 1034 (1131)
++.+..||+.+++.+..+... ..+.+..+...+.++++++.|+.|+
T Consensus 413 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~v~~g~~dg~l~ 488 (571)
T 2ad6_A 413 PFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK----FAAWGGTLYTKGGLVWYATLDGYLK 488 (571)
T ss_dssp ECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEE
T ss_pred ccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC----CCccceeEEECCCEEEEEcCCCeEE
Confidence 367999999999987776543 2233333344567788899999999
Q ss_pred EEECCCCceeeEecCC
Q 001178 1035 VFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 1035 vwd~~~~~~~~~~~~~ 1050 (1131)
.||..+|+.+.++...
T Consensus 489 a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 489 ALDNKDGKELWNFKMP 504 (571)
T ss_dssp EEETTTCCEEEEEECS
T ss_pred EEECCCCCEEEEEeCC
Confidence 9999999999888753
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.53 E-value=2.1e-05 Score=92.43 Aligned_cols=251 Identities=13% Similarity=0.105 Sum_probs=153.6
Q ss_pred EEecCCCCE----EEEEe-CCeEEEEECCCceeEEEEeCCCC----Cee-EEEEeCCCCcEEEEEe------CCCcEEEE
Q 001178 839 VALSKNDSY----VMSAG-GGKVSLFNMMNFKVMTTFMSPPP----AST-FLAFHPQDNNIIAIGM------EDSTIQIY 902 (1131)
Q Consensus 839 l~~s~dg~~----la~~~-dg~i~vwd~~~~~~~~~~~~~~~----~i~-~l~~s~~~~~~la~g~------~dg~I~iw 902 (1131)
++++|.+.. |++++ ++.|..+|..+|+.+-....... .+. ...+. ++.+ ++++ .+|.|+-+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~V-~vg~~g~e~g~~g~v~A~ 187 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDKV-IIGSSGAELGVRGYLTAY 187 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTEE-EECCBCGGGTCCCEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CCEE-EEEecccccCCCCeEEEE
Confidence 455443333 66665 89999999999999877654321 121 11222 4444 4454 37999999
Q ss_pred EeecceeEEeecccccC-------------------------------------e-eEEEEccCCCEEEEEeCC------
Q 001178 903 NVRVDEVKTKLKGHQKH-------------------------------------I-TGLAFSTNLNILVSSGSD------ 938 (1131)
Q Consensus 903 d~~~~~~~~~~~~h~~~-------------------------------------V-~~l~~s~dg~~l~s~~~D------ 938 (1131)
|..+|+.+-.+...... + ..+++.++...+..+..+
T Consensus 188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 99999887655422110 1 135666677777776655
Q ss_pred ----------CcEEEEEcCCCceeeeeeeecCCCC---CCCCceEEEEc-CCC---cEEEEE-eCCeEEEEeCCCcccce
Q 001178 939 ----------AQLIFWNTDTWEKRKSIAIQLPAGK---LPVGETRVQFH-SDQ---VRLLVN-HETQLAIYDGSKMECIR 1000 (1131)
Q Consensus 939 ----------g~v~lwd~~~~~~~~~~~~~~~~~~---~~~~v~~v~~s-~d~---~~l~~~-~d~~i~vwd~~~~~~~~ 1000 (1131)
+.|..+|.++++.+-.........- ......-+... .+| ..++.+ .+|.++++|..+|+.+.
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 3799999999887654332211000 00111122222 567 345544 58999999999998876
Q ss_pred eeecCC----------CCCCCe--------------------------EEEEEccCCCEEEEEe----------------
Q 001178 1001 QWVPQD----------VLSSPI--------------------------SSAAYSCNSQLIYATF---------------- 1028 (1131)
Q Consensus 1001 ~~~~~~----------~~~~~v--------------------------~~i~~s~dg~~l~s~~---------------- 1028 (1131)
...... ....++ ..++|+|+.+++++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~ 427 (599)
T 1w6s_A 348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA 427 (599)
T ss_dssp EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence 554221 001111 2467788777665532
Q ss_pred -----------------------cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecC
Q 001178 1029 -----------------------TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTD 1085 (1131)
Q Consensus 1029 -----------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~D 1085 (1131)
.+|.|.-||+.+|+.+.+..... + ..++ ++.. .+.+++.++.|
T Consensus 428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~----~~~g---~~~t-----agg~vf~gt~d 493 (599)
T 1w6s_A 428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--A----VWGG---TMAT-----AGDLVFYGTLD 493 (599)
T ss_dssp TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--C----CCSB---CEEE-----TTTEEEEECTT
T ss_pred CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--C----ccCc---ceEe-----cCCEEEEECCC
Confidence 34789999999999887775321 1 0111 1111 35688889999
Q ss_pred CcEEEEecCCCccccccccCC
Q 001178 1086 GSVKVIEPSETERKWGVAVPV 1106 (1131)
Q Consensus 1086 g~v~iW~~~~~~~~w~~~~p~ 1106 (1131)
|.|+.||..+++..|....|.
T Consensus 494 g~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 494 GYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp SEEEEEETTTCCEEEEEECSS
T ss_pred CeEEEEECCCCCEEEEeeCCC
Confidence 999999999999999987654
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.51 E-value=8.3e-06 Score=82.67 Aligned_cols=186 Identities=11% Similarity=0.050 Sum_probs=127.9
Q ss_pred CCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCee--EEEEeCCCCcEEEEEeCCCcEEEEEeeccee
Q 001178 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPAST--FLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV 909 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~--~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~ 909 (1131)
......+.|+. +.+..+.+ +|.|+++|+++++.+..+ .. .... .+++. ++++.+..-.++.+.+||..+.+.
T Consensus 54 ~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 54 NAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp TCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEE
T ss_pred ccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcE
Confidence 34456788873 44444444 688999999999998887 32 3333 35554 456666666789999999999999
Q ss_pred EEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeE
Q 001178 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQL 988 (1131)
Q Consensus 910 ~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i 988 (1131)
+.++... ..-..++ +|++.|+.+..++.|.++|..+.+............. -..+..+.|. +|+..+.. .++.|
T Consensus 129 ~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~-v~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 129 ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP-VELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE-CCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc-cccccccEEe-CCEEEEEECCCCeE
Confidence 9888743 2223444 5788888777789999999999887666554331111 1234456666 66544444 37799
Q ss_pred EEEeCCCcccceeeecC----------CCCCCCeEEEEEccCCCEEEEEe
Q 001178 989 AIYDGSKMECIRQWVPQ----------DVLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 989 ~vwd~~~~~~~~~~~~~----------~~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
.+.|..+++.+..+... .....-.+.||++|+++.|++++
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999999988776542 11134678999999888777766
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.51 E-value=6.3e-05 Score=82.06 Aligned_cols=239 Identities=12% Similarity=0.051 Sum_probs=146.0
Q ss_pred CeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCC-------------------CCCeeEEEEeCCCCcEEEEEe
Q 001178 835 VVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSP-------------------PPASTFLAFHPQDNNIIAIGM 894 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~-------------------~~~i~~l~~s~~~~~~la~g~ 894 (1131)
...+++++++|+++.++. ++.|..|+..+++........ ...+..+++.+++++++ ++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EEE
Confidence 356789999999666666 789999998775443211100 13578899997345544 454
Q ss_pred CCCcEEEEEeecceeEEee---cc-cccCeeEEEEcc-CCCEEEEEeC-----------------CCcEEEEEcCCCcee
Q 001178 895 EDSTIQIYNVRVDEVKTKL---KG-HQKHITGLAFST-NLNILVSSGS-----------------DAQLIFWNTDTWEKR 952 (1131)
Q Consensus 895 ~dg~I~iwd~~~~~~~~~~---~~-h~~~V~~l~~s~-dg~~l~s~~~-----------------Dg~v~lwd~~~~~~~ 952 (1131)
..+.|..+|..+++..... .+ .......+++.+ +|+++++-.. ++.|..||..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 5555888887655422111 11 113468899999 9987776532 367888888765532
Q ss_pred eeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCccc--ceeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 001178 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKMEC--IRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~--~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
.... .. .....++++|++++|.++. .+.|++|++..... ...+... .. ...+++.++|++.++..
T Consensus 179 ~~~~-~~------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 179 LLLK-EL------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp EEEE-EE------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEEEE
T ss_pred Eecc-CC------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEEEec
Confidence 2111 10 2345799999999777653 57899999875321 1122211 23 78899999999777665
Q ss_pred c----------CCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCC
Q 001178 1029 T----------DGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSET 1096 (1131)
Q Consensus 1029 ~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~ 1096 (1131)
. .+.|..+|. .++.+..+....... - ..+..+++. ++.++++....+.|..+++...
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~------~--~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFA------G--EHFEQIQEH--DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTT------T--SCCCEEEEE--TTEEEEECSSCSEEEEEEC---
T ss_pred CcccccccCCCccEEEEECC-CCCEEEEEECCCCCc------c--ccceEEEEe--CCEEEEeecCCCceEEEecccc
Confidence 4 467888886 477666665322110 0 112234442 4566666667888999987543
No 264
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.51 E-value=7.4e-06 Score=83.04 Aligned_cols=206 Identities=10% Similarity=0.041 Sum_probs=136.9
Q ss_pred eeEEEEeCCC--CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeE--EEEccCCCEEEEEeCCCc
Q 001178 865 KVMTTFMSPP--PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITG--LAFSTNLNILVSSGSDAQ 940 (1131)
Q Consensus 865 ~~~~~~~~~~--~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~--l~~s~dg~~l~s~~~Dg~ 940 (1131)
+.+.++. |. .-...+.|+ ++.++.+.+.+|.|+++|+++++.+..+ -. ..... +++.. ++..+..-.++.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCE
T ss_pred EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCE
Confidence 4455553 33 335788887 4688888889999999999999888776 22 33444 55542 244445556889
Q ss_pred EEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCCC--CCCCeEEEEE
Q 001178 941 LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDV--LSSPISSAAY 1017 (1131)
Q Consensus 941 v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~~--~~~~v~~i~~ 1017 (1131)
+.+||.++.+........ .. ...+++|++.|++++ ++.|.++|..+.+.+..+..... .-..++.+.|
T Consensus 118 v~V~D~~Tl~~~~ti~~~-------~e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYS-------GE--GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC 188 (268)
T ss_dssp EEEEETTTTEEEEEEECS-------SC--CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred EEEEECCcCcEEEEEeCC-------Cc--eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence 999999998876655432 11 123446788877765 78899999999998887765321 0124567777
Q ss_pred ccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCC-CCCCCccccEEEEEcCCCCCeEEEEecCC
Q 001178 1018 SCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS-PNSSQTVFPLVVTSHPQEPNQLAVGLTDG 1086 (1131)
Q Consensus 1018 s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg 1086 (1131)
. +|+..+..-.++.|.+.|..+|+.+..+......+... ......-..-.|+|.|....+++||-.=-
T Consensus 189 ~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp 257 (268)
T 3nok_A 189 A-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP 257 (268)
T ss_dssp E-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred e-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence 7 77655544468899999999999999998653221100 00111123346999997777888775444
No 265
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.49 E-value=1e-05 Score=98.02 Aligned_cols=277 Identities=9% Similarity=0.039 Sum_probs=153.1
Q ss_pred EEEEec-CCCcEEEEEcCCC-----------eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 352 SMDFHP-FHHTLLVVGCGDG-----------EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 352 ~~~fsp-dg~~llasg~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
++++.| +|+ +++.|+.++ .+.+||..+++..... .....+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc----------------ccCCCCCCccccccCCC
Confidence 667788 776 778776542 5889998887643210 01122333445678889
Q ss_pred CCCEEEEEeC-CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc-CC-----CcEEEEe-CCCceeE
Q 001178 420 DGNFIGVAFT-KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DD-----KLIRVWD-LSGRKLF 491 (1131)
Q Consensus 420 dg~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s-~d-----~~i~iwd-~~~~~~~ 491 (1131)
+|+.+++|+. +..+.+||..+++-.. ...+... ..-.+++..++++ +++.|+ .+ ..+.+|| .+++ -.
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~-R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~-W~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVA-RGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKT-WT 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSC-CSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTE-EE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeE-CCCCCcc-ccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCc-ce
Confidence 9999999984 4689999998764221 1112111 1123456667888 777777 44 5789999 4443 22
Q ss_pred EecCCc-cCe----EEEeecccCCccEEEEEecCC---------eEEEEeCCCCceeEEecCC---------CceEEEEE
Q 001178 492 QFEGHE-APV----YSVCPHQKENIHFIFSTAVDG---------KIKAWLYDNVGSRVDYDAP---------GLWCTTML 548 (1131)
Q Consensus 492 ~~~~h~-~~v----~~~~~~~~~~~~~l~s~s~dg---------~i~~wd~~~~~~~~~~~~~---------~~~v~~~~ 548 (1131)
.+.... .+. ....+ ..++..++.++.+| .+..||..+..-....... ...-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 221000 000 00001 12234445554443 5677887765432221111 11123444
Q ss_pred Ecc-CCCEEEEEeecCC----CCc---eEEEEeCCCCeeeEEE--ecccCCceEEEEEeCCCCEEEEEEcC---------
Q 001178 549 YSA-DGSRLFSCGTSKE----GDS---HLVEWNESEGALKRTY--IGFRKKSAGVVQFDTTRNRILAAGED--------- 609 (1131)
Q Consensus 549 ~s~-~g~~l~~~~~~~~----~~~---~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d--------- 609 (1131)
|.. +++.++.++.... ... .+.+||..+....... .........+.+..|+++.++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 543 6777777764210 011 6888888877654433 22222223445677899999998754
Q ss_pred --CcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEEC
Q 001178 610 --NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA 652 (1131)
Q Consensus 610 --g~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~ 652 (1131)
..+.+||..+.+....-.............+.|++++++.|+.
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 5689999988765432211111112234556789999998885
No 266
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.49 E-value=0.0081 Score=73.98 Aligned_cols=573 Identities=12% Similarity=0.102 Sum_probs=297.8
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 426 (1131)
...|+++.-..+|. +-.|+.+| +..||-..-+... .. .......|.++.-..+|. |-.
T Consensus 21 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~~~~~~--------~~----------~~~~~~~i~~i~~d~~g~-lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGL--IWIGSNKG-LFSYDGYSTQQHF--------TY----------GENNNTRIYCGVIIDNTY-LYM 78 (758)
T ss_dssp CCCEEEEEECTTSC--EEEEESSC-EEEECSSCEEECS--------CT----------TSTTSSCEEEEEEETTTE-EEE
T ss_pred cceEEEEEECCCCC--EEEEECCC-ccccCCCceEEEE--------cc----------CCCCCceEEEEEEcCCCc-EEE
Confidence 45799999999995 44566666 5566632211100 00 011235689988887775 445
Q ss_pred EeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec-----CCccCeE
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-----GHEAPVY 501 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-----~h~~~v~ 501 (1131)
|+.+| +..||..+..... ........|.++.. .+|. |..++.+ -+..+|.....+..+. .....|.
T Consensus 79 gT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~ 149 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIY 149 (758)
T ss_dssp EETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEE
T ss_pred EeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEE
Confidence 55555 7889987753211 11112335777754 3554 3334444 6788884333333331 1134577
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCceeEE-ecC----CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-YDA----PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~----~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
++.. +.++. |..++.+ -+..++..+...... ... ....|.++...+++..|..+. ++-+..+|..+
T Consensus 150 ~i~~--d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-----~~Gl~~~~~~~ 220 (758)
T 3ott_A 150 SIIR--TKDNQ-IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-----EGYLFQYFPST 220 (758)
T ss_dssp EEEE--CTTCC-EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE-----EEEEEEEETTT
T ss_pred EEEE--cCCCC-EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE-----CCCCeEEcCCC
Confidence 7765 33444 4445554 466777665443221 111 122488888888777555554 23588899877
Q ss_pred CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC-----CCCCcceEEEcCCCCEEEEEE
Q 001178 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG-----GLPSLPRLRFNKEGNLLVVTT 651 (1131)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~i~~v~~sp~~~~l~~~~ 651 (1131)
++... +.......|.++....++.. ..|+. +-+.+++..++.......... ....|.++....+|.+- .|+
T Consensus 221 ~~~~~-~~~l~~~~i~~i~~d~~g~l-WigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT 296 (758)
T 3ott_A 221 GQIKQ-TEAFHNNSIKSLALDGNGDL-LAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGT 296 (758)
T ss_dssp TEEEE-EEEEEEEEEEEEEECTTCCE-EEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEE
T ss_pred CeEEe-ccCCCCCeEEEEEEcCCCCE-EEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEe
Confidence 65432 22112235777777766654 44554 458888887665432221110 11246777777777644 455
Q ss_pred CCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCc
Q 001178 652 ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKP 731 (1131)
Q Consensus 652 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 731 (1131)
..| +.++..... ...+. ..+.
T Consensus 297 ~~G-l~~~~~~~~---~~~~~-----------------------~~~~-------------------------------- 317 (758)
T 3ott_A 297 DYG-ISLSRYNSA---LQFIP-----------------------ISQI-------------------------------- 317 (758)
T ss_dssp SSS-EEEECCCC----CEEEE-----------------------HHHH--------------------------------
T ss_pred CCc-ccccccCCc---eeEEe-----------------------cccC--------------------------------
Confidence 555 444322111 00000 0000
Q ss_pred eeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceee
Q 001178 732 RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAV 811 (1131)
Q Consensus 732 ~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 811 (1131)
.. ......|.++....+|...+. +.+| +..++...+...
T Consensus 318 -----------------------------~~-~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~--------- 356 (758)
T 3ott_A 318 -----------------------------TG-TGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERH--------- 356 (758)
T ss_dssp -----------------------------SC-SCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCC---------
T ss_pred -----------------------------CC-CCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccc---------
Confidence 00 001234666766666765444 3444 333332211000
Q ss_pred eceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEe-C-----CCCCeeEEEEeCC
Q 001178 812 APQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFM-S-----PPPASTFLAFHPQ 885 (1131)
Q Consensus 812 ~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~-~-----~~~~i~~l~~s~~ 885 (1131)
....+...... ..-....|.++.-..+|++-+.. ++.|..||..+++...-.. . ....|.++...+
T Consensus 357 ~~~~~~~~~~~------~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~- 428 (758)
T 3ott_A 357 DAIWYRMGDKT------YPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT- 428 (758)
T ss_dssp CCEEECTTCSS------SCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-
T ss_pred eeEEeccCCcC------CCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-
Confidence 00011100000 00124568889888888765544 6689999998876543221 1 124577887766
Q ss_pred CCcEEEEEeCCCcEEEEEeecc------eeE--Eeec---c-cccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 001178 886 DNNIIAIGMEDSTIQIYNVRVD------EVK--TKLK---G-HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK 953 (1131)
Q Consensus 886 ~~~~la~g~~dg~I~iwd~~~~------~~~--~~~~---~-h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~ 953 (1131)
++.+ -.|+..+-+.+++..+. ... ..+. + ....|.++...++|.+.+.++..+-|..+|..+++...
T Consensus 429 ~g~l-WigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~ 507 (758)
T 3ott_A 429 AGQL-WISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK 507 (758)
T ss_dssp TSEE-EEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE
T ss_pred CCCE-EEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE
Confidence 5554 45777777888886531 111 1111 1 12358999999999887744444558889987754322
Q ss_pred eeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 001178 954 SIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSI 1033 (1131)
Q Consensus 954 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i 1033 (1131)
. ..........+.++....+|.+.+.+ .+.+..|+..+++... +....-....|.++... +|++.+ ++ ++.|
T Consensus 508 ~---~~~~~~~~~~~~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g~lWi-~t-~~Gl 579 (758)
T 3ott_A 508 L---FADELTGEKSPNYLLCDEDGLLWVGF-HGGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KNSIWV-ST-TNGL 579 (758)
T ss_dssp E---CTTTSCGGGCEEEEEECTTSCEEEEE-TTEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TTEEEE-EE-SSCE
T ss_pred e---cCCCcCCCcccceEEECCCCCEEEEe-cCceEEEecCCCceEE-ecccCCCccceEEEEEC-CCCEEE-EC-CCCe
Confidence 1 11000011356778888888877655 4679999887654322 11000013568888764 665544 44 3458
Q ss_pred EEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1034 GVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1034 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
..||..+.+... .. .+ ..... ...+...+ ..|..|+.+| +..+++..
T Consensus 580 ~~~~~~~~~~~~-~~----~~------~~~~~--~~~~~~~~-G~l~fG~~~G-l~~f~p~~ 626 (758)
T 3ott_A 580 WIIDRKTMDARQ-QN----MT------NKRFT--SLLFDPKE-DCVYLGGADG-FGISHSNL 626 (758)
T ss_dssp EEEETTTCCEEE-C------C------CCCCS--EEEEETTT-TEEEEECBSE-EEEEEC--
T ss_pred EEEcCCCceeEE-ec----CC------CCcee--eeEEECCC-CcEEEecCCc-eEEEChhh
Confidence 889988766432 11 01 11111 23333324 4777888888 66777754
No 267
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.48 E-value=0.00022 Score=83.99 Aligned_cols=150 Identities=12% Similarity=0.093 Sum_probs=97.2
Q ss_pred CcEEEEEeecceeEEeecc--ccc----CeeE-EEEc---cCCC---EEEEEeCCCcEEEEEcCCCceeeeeeeec----
Q 001178 897 STIQIYNVRVDEVKTKLKG--HQK----HITG-LAFS---TNLN---ILVSSGSDAQLIFWNTDTWEKRKSIAIQL---- 959 (1131)
Q Consensus 897 g~I~iwd~~~~~~~~~~~~--h~~----~V~~-l~~s---~dg~---~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~---- 959 (1131)
+.|.-+|..+|+.+-.++. |.. .+.. +.+. .+|+ .++.++.+|.++++|..+++.+.......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 5799999999998876642 321 1111 2222 4674 78889999999999999988765433211
Q ss_pred --------------CCCCC---------C------------CCceEEEEcCCCcEEEEE---------------------
Q 001178 960 --------------PAGKL---------P------------VGETRVQFHSDQVRLLVN--------------------- 983 (1131)
Q Consensus 960 --------------~~~~~---------~------------~~v~~v~~s~d~~~l~~~--------------------- 983 (1131)
..... . ..-..++++|+..++++.
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 00000 0 001245677776655542
Q ss_pred -------------eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCC
Q 001178 984 -------------HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 984 -------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 1050 (1131)
.++.|..||+.+++.+-+..... ++..-.+...+.+++.++.|+.++.||.++|+.+.++...
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCCC----CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence 14679999999999876665431 2222222335778888999999999999999999988753
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.46 E-value=0.00034 Score=82.41 Aligned_cols=191 Identities=12% Similarity=0.038 Sum_probs=117.4
Q ss_pred EEEEcCCCcEEEEe-CCCceeEEecCCccCe---------EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC
Q 001178 471 IVTCGDDKLIRVWD-LSGRKLFQFEGHEAPV---------YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540 (1131)
Q Consensus 471 l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v---------~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 540 (1131)
++.++.++.|.-+| .+|+.+.++....... ..+++ .+..++.++.|+.|..+|.++++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 44444433488899 7899887765432210 11122 1257888889999999999999988876543
Q ss_pred Cc----eEE-EEEEcc---CCC-EEEEEeecC--CCCceEEEEeCCCCeeeEEEecccC---------------------
Q 001178 541 GL----WCT-TMLYSA---DGS-RLFSCGTSK--EGDSHLVEWNESEGALKRTYIGFRK--------------------- 588 (1131)
Q Consensus 541 ~~----~v~-~~~~s~---~g~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 588 (1131)
.. .+. +..+.. +|+ .+++++... ..++.|+.+|..+|+.+-.......
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 234 454443211 1267899999999998876543100
Q ss_pred -------------------CceEEEEEeCCCCEEEEEEc--------------------C----CcEEEEEcCCCeEEEE
Q 001178 589 -------------------KSAGVVQFDTTRNRILAAGE--------------------D----NQIKFWDMDNVNMLTS 625 (1131)
Q Consensus 589 -------------------~~v~~~~~s~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 625 (1131)
......+++|+...++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 00123567777788887663 2 5899999999999888
Q ss_pred EeccCCC----CCcce-EEEc---CCCC---EEEEEECCCcEEEEecCCCc
Q 001178 626 TEAEGGL----PSLPR-LRFN---KEGN---LLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 626 ~~~~~~~----~~i~~-v~~s---p~~~---~l~~~~~dg~i~iw~~~~~~ 665 (1131)
.+...+. ..+.. +.+. .+|+ .++.++.+|.++++|..++.
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 357 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCC
Confidence 7653221 01111 2222 4674 78889999999999998884
No 269
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.45 E-value=4.1e-05 Score=77.09 Aligned_cols=188 Identities=12% Similarity=0.108 Sum_probs=128.3
Q ss_pred CCCeeEEEecCCCCEEEEEe-C--CeEEEEECCCceeEEEEeCCCCC-eeEEEEeCCCCcEEEEEeCCCcEEEEEeecce
Q 001178 833 EDVVPCVALSKNDSYVMSAG-G--GKVSLFNMMNFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-d--g~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~ 908 (1131)
......+.|+. +.+..+.+ . ..|+.+|+.+++.+......... -..+++. ++++.+..-.++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 45566889986 44444444 3 47999999999999988754332 1334444 45666667788999999999999
Q ss_pred eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCe
Q 001178 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQ 987 (1131)
Q Consensus 909 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~ 987 (1131)
.+.++..... =..++ +|+..|+.+..++.|.++|..+.+............. -..+..+.+. +|+..+.. .+..
T Consensus 97 ~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~-~~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 97 PRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP-LDNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEE-CCCEEEEEEE-TTEEEEEETTTTE
T ss_pred EEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcc-cccceeeEEe-CCEEEEEECCCCe
Confidence 9988874332 23444 5777777666788999999999877665544321111 1233345544 56544443 4779
Q ss_pred EEEEeCCCcccceeeecCC----------CCCCCeEEEEEccCCCEEEEEe
Q 001178 988 LAIYDGSKMECIRQWVPQD----------VLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 988 i~vwd~~~~~~~~~~~~~~----------~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
|.+.|..+++.+..+.... ....-.+.||++|+++.|++++
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 9999999999888876331 1134568999999988888877
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.42 E-value=2.8e-05 Score=95.36 Aligned_cols=247 Identities=11% Similarity=0.024 Sum_probs=131.7
Q ss_pred cEEEEEEe-cCCCcEEEEEcCCC----eEEEEECCCC-cccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 349 SVVSMDFH-PFHHTLLVVGCGDG----EITLWDVGLR-ERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 349 ~V~~~~fs-pdg~~llasg~~dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
.+...+|| |||++++.+-+.+| +|+++|+.+| +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 68889999 99997555544433 5999999998 63321 0 10 1134688999999
Q ss_pred EEEEEeCC-----CeEEEEEecCCCccceeeeee-cCcCCeeEEEEecCCCceEEEEEc-CCCcEEEEeC-CCc-ee--E
Q 001178 423 FIGVAFTK-----HLIHLYTYQGSNDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRVWDL-SGR-KL--F 491 (1131)
Q Consensus 423 ~las~~~d-----~~i~vwd~~~~~~~~~~~~~~-~h~~~V~~l~~s~d~~~~~l~s~s-~d~~i~iwd~-~~~-~~--~ 491 (1131)
.|+....| ..|.++++.++..... ..+. .+......+.|+|||+.+++.+.. ....|.++|. ++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 88887665 2578888877542211 1222 233456788999999963333322 2446788884 331 22 3
Q ss_pred Eec-CCccCeEEEeecccCCccEEEEEecC----CeEEEEeCCCCceeEE-ecCCCc--eEEEEEEccCCCEEEEEeecC
Q 001178 492 QFE-GHEAPVYSVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGSRVD-YDAPGL--WCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 492 ~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~-~~~~~~--~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
.+. .......++.|+ .++.+++....+ ..|..+++.+...... +..+.. .+..+.+ .++.|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-e
Confidence 333 334455555442 222344444433 3566677664222112 222222 3444444 4566665543 3
Q ss_pred CCCceEEEEeC-------CCCeeeEEEecccCCceEEEEE----eCCCC-EEEEEEcC---CcEEEEEcCCCeE
Q 001178 564 EGDSHLVEWNE-------SEGALKRTYIGFRKKSAGVVQF----DTTRN-RILAAGED---NQIKFWDMDNVNM 622 (1131)
Q Consensus 564 ~~~~~i~iwd~-------~~~~~~~~~~~~~~~~v~~~~~----s~~~~-~l~~~~~d---g~i~iwd~~~~~~ 622 (1131)
++...|+++++ .+++....+.......+..+.+ +++++ .+++.+.. ..++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34557788885 3443133332111111222322 34554 44443332 4677788877653
No 271
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.41 E-value=8e-05 Score=74.96 Aligned_cols=211 Identities=9% Similarity=0.079 Sum_probs=136.5
Q ss_pred eeEEEEeCCC--CCeeEEEEeCCCCcEEEEEeCCC--cEEEEEeecceeEEeecccccCeeEEEEccCCC-EEEEEeCCC
Q 001178 865 KVMTTFMSPP--PASTFLAFHPQDNNIIAIGMEDS--TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN-ILVSSGSDA 939 (1131)
Q Consensus 865 ~~~~~~~~~~--~~i~~l~~s~~~~~~la~g~~dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~-~l~s~~~Dg 939 (1131)
+.+.++. |. .-...+.|++ +.++.+.+.+| .|+.+|+.+++.+....-... ........+++ ..+..-.++
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCC
Confidence 4555663 43 3467899985 56666666654 899999999998887754332 33332233344 444555688
Q ss_pred cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCCC--CCCCeEEEE
Q 001178 940 QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDV--LSSPISSAA 1016 (1131)
Q Consensus 940 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~~--~~~~v~~i~ 1016 (1131)
.+.+||.++.+........ .. ...+++|+..|+++. ++.|.++|..+.+.+..+..... .-..++.+.
T Consensus 86 ~v~v~D~~tl~~~~ti~~~-------~~--Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYP-------GE--GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp EEEEEETTTTEEEEEEECS-------SC--CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEEEECCcCcEEEEEeCC-------CC--ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 9999999998876655432 11 234446777777653 77899999999988887765311 013456677
Q ss_pred EccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCC-CCCccccEEEEEcCCCCCeEEEEecCCcEE
Q 001178 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPN-SSQTVFPLVVTSHPQEPNQLAVGLTDGSVK 1089 (1131)
Q Consensus 1017 ~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~ 1089 (1131)
+. +|+..+..-.+..|.+.|..+|+.+..+......+..... ....-..-.|+|+|....+++||-.=-.++
T Consensus 157 ~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~ 229 (243)
T 3mbr_X 157 WV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLY 229 (243)
T ss_dssp EE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEE
Confidence 65 6765555446789999999999999999866433322100 011123356999997777777776555443
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.39 E-value=8.2e-05 Score=80.37 Aligned_cols=228 Identities=15% Similarity=0.094 Sum_probs=138.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc-CCC-cEEEEe-CC
Q 001178 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDK-LIRVWD-LS 486 (1131)
Q Consensus 410 ~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s-~d~-~i~iwd-~~ 486 (1131)
.....++|+++|+++++-..++.|..||..++. ... + ........+++.++|+ ++++.. .++ .|..+| .+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIH--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEE--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEE--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 457789999999977777678999999987532 211 1 1234688999999998 455443 333 466677 56
Q ss_pred CceeEEec-CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE-e-------c--CCCceEEEEEEccCCCE
Q 001178 487 GRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-Y-------D--APGLWCTTMLYSADGSR 555 (1131)
Q Consensus 487 ~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~-------~--~~~~~v~~~~~s~~g~~ 555 (1131)
++...... ........++.. .++..+++...++.|..+|......... . . ..-.....+ ++++++
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 65432221 112223444432 2334455555688888888765422111 0 0 111234555 889988
Q ss_pred EEEEeecCCCCceEEEEeCCC-Cee--eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCC
Q 001178 556 LFSCGTSKEGDSHLVEWNESE-GAL--KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1131)
|+.+.. ..+.|+.++... ++. ...+.. ......++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 877653 367899999864 332 122211 1134458899999877776677899999975 5543322222222
Q ss_pred CCcceEEEc---CCCCEEEEEECCC
Q 001178 633 PSLPRLRFN---KEGNLLVVTTADQ 654 (1131)
Q Consensus 633 ~~i~~v~~s---p~~~~l~~~~~dg 654 (1131)
....+++|. |+++.|++++..+
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCceEEEEecccCCCCEEEEECCCC
Confidence 357899998 8888887776543
No 273
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.39 E-value=0.0001 Score=80.40 Aligned_cols=255 Identities=9% Similarity=-0.005 Sum_probs=142.3
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccc--ee-c---eeccCCCCCEEEEEEcC-CC
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMM--LQ-A---AIVKDSSISVSRVAWSP-DG 421 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~h~~~V~~~~~sp-dg 421 (1131)
...+++|+++|+ ++.++..++.|..||..+++... |........ .. . .........+..+++.+ +|
T Consensus 20 ~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 20 APNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp CCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred CceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 456788999987 47778888999999987654321 110000000 00 0 00000113578999998 66
Q ss_pred CEEEEEeCCCeEEEEEecCCCccceeee-eec-CcCCeeEEEEec-CCCceEEEEEcC-----------------CCcEE
Q 001178 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLE-IDA-HVGGVNDLAFSY-PNKQLCIVTCGD-----------------DKLIR 481 (1131)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~-~~~-h~~~V~~l~~s~-d~~~~~l~s~s~-----------------d~~i~ 481 (1131)
+ |..+...+.|..+|..++.. ..... ..+ .......+++.+ +|+ +.++... ++.|.
T Consensus 93 ~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 93 Q-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp E-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred c-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEE
Confidence 5 44454455588888765432 11111 111 123478899999 887 5555432 36788
Q ss_pred EEeCCCceeEEecCCccCeEEEeecccCCccEEEEE-ecCCeEEEEeCCCCc--eeEEecCCCceEEEEEEccCCCEEEE
Q 001178 482 VWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST-AVDGKIKAWLYDNVG--SRVDYDAPGLWCTTMLYSADGSRLFS 558 (1131)
Q Consensus 482 iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~ 558 (1131)
.||..+..+..+.........++++ ++++.|+.+ +..+.|..|++.... ....+..... ...+++.++|++.++
T Consensus 169 ~~d~~~~~~~~~~~~~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 169 KYDPSTKETTLLLKELHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp EEETTTTEEEEEEEEESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred EEeCCCCEEEEeccCCccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence 8884433333322222334567775 455655544 667899999987521 1111111222 678999999987666
Q ss_pred EeecC------CCCceEEEEeCCCCeeeEEEecccC---CceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 559 CGTSK------EGDSHLVEWNESEGALKRTYIGFRK---KSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 559 ~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
..... ...+.|..+|. .++.+..+..... ..+..+++. ++..+++....+.|.++++..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC--
T ss_pred ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEeccc
Confidence 53200 01356888986 4777777764321 235556553 444444444677888888753
No 274
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.39 E-value=0.00022 Score=76.97 Aligned_cols=241 Identities=9% Similarity=0.022 Sum_probs=142.3
Q ss_pred CCcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEE
Q 001178 334 DDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS 413 (1131)
Q Consensus 334 ~~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 413 (1131)
+..+.+.+..+........++|+|+|+ ++++-..++.|..||..++. .. .|. ....+.
T Consensus 18 ~~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~-----~~~---------------~~~~p~ 75 (306)
T 2p4o_A 18 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QI-----HAT---------------VEGKVS 75 (306)
T ss_dssp CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EE-----EEE---------------CSSEEE
T ss_pred cCCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EE-----EEe---------------CCCCce
Confidence 344555666666557889999999997 67777778999999987532 11 111 123688
Q ss_pred EEEEcCCCCEEEEEeCCC--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCC-Cc-e
Q 001178 414 RVAWSPDGNFIGVAFTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS-GR-K 489 (1131)
Q Consensus 414 ~~~~spdg~~las~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~-~~-~ 489 (1131)
.++++++|+++++..... .|..+|..+++. .....+. .......++..+++. .+++...++.|.++|.. ++ .
T Consensus 76 gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~-~~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 76 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTV-ETLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTSCE-EEEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-EEEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEe
Confidence 999999999766554332 466677777653 2222221 222345556555554 56666668889899843 32 2
Q ss_pred eEEec---------CCccCeEEEeecccCCcc-EEEEEecCCeEEEEeCCCCce---eEEecCCCceEEEEEEccCCCEE
Q 001178 490 LFQFE---------GHEAPVYSVCPHQKENIH-FIFSTAVDGKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 490 ~~~~~---------~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l 556 (1131)
+.... ..-.....+ + +++. +.++-+..+.|..++++.... ...+.. ......++++++|++.
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s--~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~ 226 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--K--RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLY 226 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--E--EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEE
T ss_pred EEEECCccccccccCCCCcCCCc--C--cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEE
Confidence 21111 111123444 2 2334 445556778999999875211 111111 1234568899999875
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecc-cCCceEEEEEe---CCCCEEEEEEcCC
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGF-RKKSAGVVQFD---TTRNRILAAGEDN 610 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s---~~~~~l~~~~~dg 610 (1131)
++... .+.|.+++.. ++........ ......+++|. ++++.|++++..+
T Consensus 227 va~~~----~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 227 GATHI----YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECBT----TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEeCC----CCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 55432 6789999975 6553321111 12357889998 7888777766543
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.28 E-value=0.00066 Score=74.46 Aligned_cols=238 Identities=11% Similarity=0.039 Sum_probs=148.6
Q ss_pred CeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec
Q 001178 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK 914 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~ 914 (1131)
...|.+..+ ..+|+.+....|+..++.+......+. ....+..++|++.++.++.+-...+.|+.+++........+.
T Consensus 35 ~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 35 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp SSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 345666666 345666666678888887765544443 345588999998566666666677889999987655433333
Q ss_pred ccccCeeEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--C-CeEEE
Q 001178 915 GHQKHITGLAFSTNL-NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--E-TQLAI 990 (1131)
Q Consensus 915 ~h~~~V~~l~~s~dg-~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d-~~i~v 990 (1131)
.......++++.+.+ +++++-...+.|.+.+++...... .. ... ......++++|.+..|..++ . +.|..
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l~-~~~---l~~P~~iavdp~~g~ly~td~~~~~~I~r 186 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--LL-WQS---LEKPRAIALHPMEGTIYWTDWGNTPRIEA 186 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EE-CTT---CSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--EE-eCC---CCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence 333456789999754 455565667889999988643211 11 111 14568899999877777654 3 67888
Q ss_pred EeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEE
Q 001178 991 YDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVV 1069 (1131)
Q Consensus 991 wd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 1069 (1131)
++.+... ...+.... -.....++|++++..|+.+. ..+.|..++++.......+... .-.+..+
T Consensus 187 ~~~dG~~-~~~~~~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~------------~~~P~gi 251 (349)
T 3v64_C 187 SSMDGSG-RRIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG------------LPHPFAI 251 (349)
T ss_dssp EETTSCS-CEESCCSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS------------CSSEEEE
T ss_pred EeCCCCC-cEEEEECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC------------CCCceEE
Confidence 8876433 22222111 34678999999888777776 4578999998754332222211 1123345
Q ss_pred EEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1070 TSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1070 ~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
+.. ++.++++-...+.|...+..+++
T Consensus 252 av~--~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 252 TVF--EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEE--CCEEEEecCCCCeEEEEEccCCC
Confidence 552 44666676677778877754443
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.28 E-value=0.00055 Score=70.06 Aligned_cols=201 Identities=10% Similarity=0.080 Sum_probs=130.0
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
-.+.+..++|+|++..|+++...++.|...|.. ++.+...+ +.+ ....-.+++.+++.+++
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEE
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEE
Confidence 345899999999987788888889999999998 66554211 222 25678899999998777
Q ss_pred EEeCCCeEEEEEecCCCccc--eeeee----ecCcCCeeEEEEecCCCceEEEEEcCCC--cEEEEe--CCCceeEEec-
Q 001178 426 VAFTKHLIHLYTYQGSNDLC--QSLEI----DAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWD--LSGRKLFQFE- 494 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~--~~~~~----~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd--~~~~~~~~~~- 494 (1131)
+.-.++.+.++++.....+. ....+ .........++|.|+++. |.++.... .|..|+ ..+..+..+.
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecc
Confidence 76677889999987654322 11111 123456799999999985 33333333 455555 2222222221
Q ss_pred ------CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC---------ceEEEEEEccCCCEEEEE
Q 001178 495 ------GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG---------LWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 495 ------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~g~~l~~~ 559 (1131)
.+...+.+++++|.. +++++.....+.+..+|.+.. ....+.... .....|+|.++|+..++
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv- 240 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV- 240 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-
T ss_pred hhhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-
Confidence 133467889998754 467777778888999987644 333333221 25689999999985555
Q ss_pred eecCCCCceEEEEeC
Q 001178 560 GTSKEGDSHLVEWNE 574 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~ 574 (1131)
+. .+.++.+..
T Consensus 241 sE----~n~~y~f~~ 251 (255)
T 3qqz_A 241 SE----PNRFYRFTP 251 (255)
T ss_dssp ET----TTEEEEEEC
T ss_pred cC----CceEEEEEe
Confidence 43 446666643
No 277
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.28 E-value=0.0034 Score=68.14 Aligned_cols=280 Identities=10% Similarity=0.047 Sum_probs=148.7
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
....+.+|.|.+++. ++++| .+|.| +...+.|+. |..... ........+.+|+|++ +..++
T Consensus 34 ~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~t--------W~~~~~-------~~~~~~~~~~~i~~~~-~~~~~ 94 (327)
T 2xbg_A 34 TTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQT--------WEPRTL-------VLDHSDYRFNSVSFQG-NEGWI 94 (327)
T ss_dssp CSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSS--------CEECCC-------CCSCCCCEEEEEEEET-TEEEE
T ss_pred CCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCC--------CeECCC-------CCCCCCccEEEEEecC-CeEEE
Confidence 445799999988776 56665 46654 334444432 110000 0112345688999986 44444
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE-EEeCCCcee-EEecCCccCeEEE
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR-VWDLSGRKL-FQFEGHEAPVYSV 503 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~-iwd~~~~~~-~~~~~h~~~v~~~ 503 (1131)
+ +.++.|.. ..+.|+..........+.+.+..+.+.+++. .++.+. ++.|. -+| .|+.- ....++...+..+
T Consensus 95 ~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~S~D-gG~tW~~~~~~~~~~~~~~ 168 (327)
T 2xbg_A 95 V-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYRTKD-SGKNWQALVQEAIGVMRNL 168 (327)
T ss_dssp E-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEEESS-TTSSEEEEECSCCCCEEEE
T ss_pred E-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEEEcC-CCCCCEEeecCCCcceEEE
Confidence 4 45564433 3333443332111112345678888887776 555554 55443 333 23322 2223455678888
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
++.+ ++.+++.+...+..+-+|-....-..........+..+.+.++++.++.+. ++.+++.+...|+.-..+
T Consensus 169 ~~~~--~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~ 241 (327)
T 2xbg_A 169 NRSP--SGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGEL 241 (327)
T ss_dssp EECT--TSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCC
T ss_pred EEcC--CCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEec
Confidence 8754 445665554433334343211111111122345688899999988776553 566766642224332222
Q ss_pred ecc---cCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc-CCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001178 584 IGF---RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-GGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 584 ~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw 659 (1131)
... ....+..+.+.+++..+++ +.+|.| ++..+.++.-..+... .....+..+.|.+++ .+++++.+|.|.-+
T Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 242 LSPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRY 318 (327)
T ss_dssp BCTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEE
T ss_pred cCCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEE
Confidence 211 1124777888887665555 456766 4555666555544422 112357889887655 46667788877666
Q ss_pred e
Q 001178 660 A 660 (1131)
Q Consensus 660 ~ 660 (1131)
+
T Consensus 319 ~ 319 (327)
T 2xbg_A 319 V 319 (327)
T ss_dssp C
T ss_pred c
Confidence 5
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.26 E-value=0.00044 Score=77.14 Aligned_cols=237 Identities=11% Similarity=0.041 Sum_probs=148.6
Q ss_pred eEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeeccc
Q 001178 837 PCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH 916 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h 916 (1131)
.|.+..+ ..+|+.+....|+.+++.+........ ....+..++|.+.++.++.+-...+.|+.+++........+...
T Consensus 80 ~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 80 SCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp CEEECSS-CCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred eECCccc-cceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 3555555 445666666789999988766554444 34568899999856666666667788999998766544433333
Q ss_pred ccCeeEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--C-CeEEEEe
Q 001178 917 QKHITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--E-TQLAIYD 992 (1131)
Q Consensus 917 ~~~V~~l~~s~dg~-~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d-~~i~vwd 992 (1131)
......+++.+.+. ++++-...+.|.+.+++....... .. .. ......++++|.+..|..+. . +.|+.++
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l--~~---~~-l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL--LW---QS-LEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE--EC---SS-CSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe--ec---CC-CCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 34567899987554 455555677888888876432111 11 11 14568899999888777754 3 6788888
Q ss_pred CCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEE
Q 001178 993 GSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTS 1071 (1131)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~ 1071 (1131)
...... ..+.... -.....++|++++..|+.+. ..+.|..++++.......+... .-.+..++.
T Consensus 232 ~dG~~~-~~~~~~~--~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~------------~~~P~giav 296 (386)
T 3v65_B 232 MDGSGR-RIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG------------LPHPFAITV 296 (386)
T ss_dssp TTSCSC-EEEECSS--CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS------------CSSEEEEEE
T ss_pred CCCCCc-EEEEECC--CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC------------CCCceEEEE
Confidence 764332 2222211 34578999998888777776 4578999998754332222211 112344555
Q ss_pred cCCCCCeEEEEecCCcEEEEecCCCcc
Q 001178 1072 HPQEPNQLAVGLTDGSVKVIEPSETER 1098 (1131)
Q Consensus 1072 ~p~~~~~l~s~~~Dg~v~iW~~~~~~~ 1098 (1131)
. ++.++++-...+.|..++..+++.
T Consensus 297 ~--~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 297 F--EDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp E--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred E--CCEEEEeeCCCCeEEEEECCCCcc
Confidence 2 446777777778888887544443
No 279
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.24 E-value=0.00051 Score=70.33 Aligned_cols=216 Identities=9% Similarity=0.064 Sum_probs=131.4
Q ss_pred EEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec-ccccCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001178 869 TFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 869 ~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
.+.+-...+..++++|+++.++++...++.|...|.. ++.+..+. +-....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3445556799999999667788888899999999987 77777653 222568889999998877776677889999887
Q ss_pred CCceee-eeeeec--CCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCC---cccceeeec----CCCCCCCeEEEE
Q 001178 948 TWEKRK-SIAIQL--PAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSK---MECIRQWVP----QDVLSSPISSAA 1016 (1131)
Q Consensus 948 ~~~~~~-~~~~~~--~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~---~~~~~~~~~----~~~~~~~v~~i~ 1016 (1131)
...... ...... ...........++++|++..|.++. .....+|.+.. ...+..... ...+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 654211 111111 1122235678999999997766654 33334444431 111111100 011134678999
Q ss_pred EccCC-CEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEE
Q 001178 1017 YSCNS-QLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVI 1091 (1131)
Q Consensus 1017 ~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW 1091 (1131)
+.|.. ++++.....+.+.++|.. |+.+..+........-.... ..+=.|+|.+ +++++++ ++-+.+..+
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~---~qpEGia~d~-~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNI---KQAEGVAMDA-SGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCC---CSEEEEEECT-TCCEEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCccccc---CCCCeeEECC-CCCEEEE-cCCceEEEE
Confidence 99965 455666677889999966 55666665442211110001 1222489988 5665555 666644444
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.23 E-value=0.001 Score=71.82 Aligned_cols=208 Identities=9% Similarity=-0.062 Sum_probs=131.3
Q ss_pred CCCeeEEEecCCCCEEEEEe--CCeEEEEECCC----ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001178 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMN----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~ 906 (1131)
...+..++|++++..|..++ .+.|..+++.+ ......+.........+++.+.++++.++-..++.|.+++++.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34567899999877777776 58899999876 2222223333345688999874566666666788999999875
Q ss_pred ceeEEeecccccCeeEEEEccCCCEEEEEeCC--CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe
Q 001178 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSD--AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH 984 (1131)
Q Consensus 907 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D--g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 984 (1131)
......+........+++++|.+..|..+... +.|...+++..... . ... . .......+++++++..|..++
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~-~-~~~-~---~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-S-LVT-E---NIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-E-EEC-S---SCSCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE-E-EEE-C---CCCCceEEEEeccCCEEEEEE
Confidence 43333333334567899999876665554432 67888887653321 1 111 1 114567899999888887764
Q ss_pred --CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEec
Q 001178 985 --ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 985 --d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
.+.|..+++.. .....+............+++. .+.+.++-...+.|..++..+|+....+.
T Consensus 183 ~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 183 SKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 56899999874 3333333211113456788885 34445554467889999988887665554
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.20 E-value=0.0014 Score=70.75 Aligned_cols=229 Identities=10% Similarity=0.011 Sum_probs=142.2
Q ss_pred EEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec----ceeEEeecccccCeeE
Q 001178 847 YVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV----DEVKTKLKGHQKHITG 922 (1131)
Q Consensus 847 ~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~----~~~~~~~~~h~~~V~~ 922 (1131)
+|+.+....|+..|+.+.+....+. ....+..++|++.++.++.+-..++.|+.+++.. ......+........+
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 4666667789999998876655544 3456889999984556666666678999999876 2222223323345688
Q ss_pred EEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--C-CeEEEEeCCCccc
Q 001178 923 LAFSTNL-NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--E-TQLAIYDGSKMEC 998 (1131)
Q Consensus 923 l~~s~dg-~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d-~~i~vwd~~~~~~ 998 (1131)
+++.+.+ +++++-...+.|.+.+++....... .. .. ......++++|.+..|..+. . +.|..++.+. ..
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~--~~-~~---~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~ 154 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL--FR-EN---GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VD 154 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEE--EE-CT---TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CC
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceEEE--EE-CC---CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CC
Confidence 9998754 4555656778999999876432211 11 11 14568899999777666653 2 6788888763 33
Q ss_pred ceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCC
Q 001178 999 IRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPN 1077 (1131)
Q Consensus 999 ~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~ 1077 (1131)
...+.... -.....++++++++.|+.+. ..+.|..+|++.... ..+.... .....+..++.. ++.
T Consensus 155 ~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~---------~~~~~P~giav~--~~~ 220 (316)
T 1ijq_A 155 IYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDE---------KRLAHPFSLAVF--EDK 220 (316)
T ss_dssp EEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECT---------TTTSSEEEEEEE--TTE
T ss_pred eEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecC---------CccCCcEEEEEE--CCE
Confidence 33332211 34678999999888777776 457899999975332 2221100 011123445553 356
Q ss_pred eEEEEecCCcEEEEecCCCc
Q 001178 1078 QLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1078 ~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
++++-...++|..++..+++
T Consensus 221 ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEECCCCeEEEEeCCCCc
Confidence 77777777888888875443
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=0.00061 Score=77.08 Aligned_cols=250 Identities=12% Similarity=0.060 Sum_probs=144.8
Q ss_pred CeeEEEecC-CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeC-CC----cEEEEEeecc
Q 001178 835 VVPCVALSK-NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME-DS----TIQIYNVRVD 907 (1131)
Q Consensus 835 ~i~~l~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~-dg----~I~iwd~~~~ 907 (1131)
....++++| ++..|.++. .+.|+.+|+.++...... ........++|++ ++++|.++.. ++ .+.+++ ..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 456899998 456666666 478999999887655443 3456688999999 7775554543 22 233344 333
Q ss_pred eeE--EeecccccCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe
Q 001178 908 EVK--TKLKGHQKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH 984 (1131)
Q Consensus 908 ~~~--~~~~~h~~~V~~l~~s~-dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 984 (1131)
... ..+. ......+++++| +|.++++-..++.|..++..++.... ....... .....++|+|+|++|.+..
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~---~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS---GWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS---SCCEEEEECTTSSEEEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC---CcceeEEEcCCCCEEEEEE
Confidence 221 2222 123467789999 67777777678899999998754321 1111111 3467899999999766653
Q ss_pred --CCeEEEEeCCC--ccc--ceeeecCC---C---------CCCCeE-EEEEc--------cCCCEEEEEecCCcEEEEE
Q 001178 985 --ETQLAIYDGSK--MEC--IRQWVPQD---V---------LSSPIS-SAAYS--------CNSQLIYATFTDGSIGVFD 1037 (1131)
Q Consensus 985 --d~~i~vwd~~~--~~~--~~~~~~~~---~---------~~~~v~-~i~~s--------~dg~~l~s~~~dg~i~vwd 1037 (1131)
.+.|+.++... +.. +..+.+.. + .-.... .++.. ++|.+.++-...+.|+.++
T Consensus 289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~ 368 (430)
T 3tc9_A 289 VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368 (430)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence 67888877653 221 12222110 0 001223 45553 3455555544668899998
Q ss_pred CCCCceeeEecCCc-cccC---C-CCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1038 ADSLRLRCRIAPSA-YMSQ---A-SPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1038 ~~~~~~~~~~~~~~-~~~~---~-~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
..|.......... .... . .........|..+++.|.++.++++-...++|+.+++.
T Consensus 369 -~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 369 -PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 4565433322100 0000 0 01112234677899998666677776677788887764
No 283
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.18 E-value=0.0012 Score=73.51 Aligned_cols=246 Identities=13% Similarity=0.040 Sum_probs=149.4
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE-
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA- 427 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~- 427 (1131)
.-+|.+..+.+ +++++ ....|+..++.++.... +. .....+..++|++.+..|..+
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~-------------------~~-~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL-------------------LL-NNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE-------------------EE-CSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEE-------------------Ee-cCCCccEEEEEecCCCeEEEEe
Confidence 34466666643 33433 34578888887654321 11 223458899999866555544
Q ss_pred eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec-CCccCeEEEeec
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPH 506 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~ 506 (1131)
...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.+..|.....+. ........+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 566889999988754211 12222334678899986664 5566666788999886666544433 333567888886
Q ss_pred ccCCccEEEEEecC-CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEec
Q 001178 507 QKENIHFIFSTAVD-GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585 (1131)
Q Consensus 507 ~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 585 (1131)
+.. +.+.++-... +.|...+++.................++++|++..|+.+-. ..+.|..++...... +.+..
T Consensus 211 p~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~-~~~~~ 285 (386)
T 3v65_B 211 PME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHR-KAVIS 285 (386)
T ss_dssp TTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSC-EEEEC
T ss_pred cCC-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCee-EEEEE
Confidence 533 3444444444 78888888765444444444446789999998888877753 367899999764333 33322
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEe
Q 001178 586 FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1131)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1131)
........+++. .+..+++-...+.|..++..+++....+.
T Consensus 286 ~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 286 QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 222244566663 34444555567778888866666655554
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.17 E-value=0.0015 Score=73.14 Aligned_cols=231 Identities=9% Similarity=0.004 Sum_probs=146.2
Q ss_pred CEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc----eeEEeecccccCee
Q 001178 846 SYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD----EVKTKLKGHQKHIT 921 (1131)
Q Consensus 846 ~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~----~~~~~~~~h~~~V~ 921 (1131)
.+|+.+....|+..++.+........ ....+..++|++.++.++.+-...+.|+.+++... .....+........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 46666677889999998765544443 45678999999855666666566788998988652 22233333445678
Q ss_pred EEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe---CCeEEEEeCCCcc
Q 001178 922 GLAFSTN-LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH---ETQLAIYDGSKME 997 (1131)
Q Consensus 922 ~l~~s~d-g~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d~~i~vwd~~~~~ 997 (1131)
.+++.+. ++++++-...+.|.+.+++........ . .. ......+++.|.+.+|+.+. .+.|...+++...
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~--~-~~---~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF--R-EN---GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE--E-CS---SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE--e-CC---CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 8999874 555556666788999998864432211 1 11 14568899999877777654 3678888887433
Q ss_pred cceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCC
Q 001178 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEP 1076 (1131)
Q Consensus 998 ~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~ 1076 (1131)
........ -.....|+++++++.|+.+. ..+.|..+|++.......+.... ..-.+..++.. ++
T Consensus 237 ~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~----------~l~~P~gl~v~--~~ 301 (400)
T 3p5b_L 237 IYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK----------RLAHPFSLAVF--ED 301 (400)
T ss_dssp CEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS----------TTSSEEEEEEE--TT
T ss_pred cEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC----------CCCCCEEEEEe--CC
Confidence 32222221 35678999999888888776 45789999987554333322111 11123345442 34
Q ss_pred CeEEEEecCCcEEEEecCCCcc
Q 001178 1077 NQLAVGLTDGSVKVIEPSETER 1098 (1131)
Q Consensus 1077 ~~l~s~~~Dg~v~iW~~~~~~~ 1098 (1131)
.++++-...+.|..++..+++.
T Consensus 302 ~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 302 KVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EEEEEESSSCSEEEEESSSCCC
T ss_pred EEEEecCCCCeEEEEEcCCCCc
Confidence 5777777778888888655543
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.17 E-value=0.0022 Score=69.71 Aligned_cols=234 Identities=10% Similarity=0.046 Sum_probs=134.2
Q ss_pred CCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEe---CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeeccee
Q 001178 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFM---SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV 909 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~ 909 (1131)
...+.++.+++ +..++++..+.|.. ..+.++.-.... .....+..+.+.+ ++.+++++ .+|.|+. ..+.++.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCC
Confidence 44678899976 55566665675443 333333322222 1234577888877 67777655 4565432 1222322
Q ss_pred E-EeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEc--CCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCC
Q 001178 910 K-TKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNT--DTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHET 986 (1131)
Q Consensus 910 ~-~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~--~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~ 986 (1131)
- ....++...+.++++.+++.+++.+...+..+-+|- .+++.. ... ....+..+++.+++..++++.+|
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-----~~~---~~~~~~~~~~~~~g~~~~~~~~G 225 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-----NRT---TSRRLHNMGFTPDGRLWMIVNGG 225 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-----ECC---SSSCEEEEEECTTSCEEEEETTT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-----CCC---CCCccceeEECCCCCEEEEeCCc
Confidence 1 122345567899999999888876654443334442 232221 111 12567889999999988888888
Q ss_pred eEEEEeCCCcccceeeecC-CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccc
Q 001178 987 QLAIYDGSKMECIRQWVPQ-DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVF 1065 (1131)
Q Consensus 987 ~i~vwd~~~~~~~~~~~~~-~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1065 (1131)
.+++.+.+.++....+... ......+.++++.+++.+++++. ++.| .+..+.|+....+...... ....+
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~-------~~~~~ 296 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKV-------PSNFY 296 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTS-------SSCCC
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCC-------CCCeE
Confidence 8887754434433332211 11134689999999888777665 7777 4566667665554421100 11122
Q ss_pred cEEEEEcCCCCCeEEEEecCCcEEEEe
Q 001178 1066 PLVVTSHPQEPNQLAVGLTDGSVKVIE 1092 (1131)
Q Consensus 1066 ~~~v~~~p~~~~~l~s~~~Dg~v~iW~ 1092 (1131)
.+.|.+ +..+++++.+|.|.-++
T Consensus 297 --~v~~~~--~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 297 --KILFFS--PDQGFILGQKGILLRYV 319 (327)
T ss_dssp --EEEEEE--TTEEEEECSTTEEEEEC
T ss_pred --EEEEEC--CCceEEEcCCceEEEEc
Confidence 455654 34677888899766554
No 286
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.15 E-value=0.0009 Score=73.40 Aligned_cols=205 Identities=9% Similarity=-0.032 Sum_probs=133.8
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEE
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~ 911 (1131)
..+..++|++.+..|..+. .+.|..+++.+......+.........+++.+.++.++++-...+.|.+.+++......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 3478899998877777766 68899999987665444443345567899997566666666677889999987544333
Q ss_pred eecccccCeeEEEEccCCCEEE-EEeCC-CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCe
Q 001178 912 KLKGHQKHITGLAFSTNLNILV-SSGSD-AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQ 987 (1131)
Q Consensus 912 ~~~~h~~~V~~l~~s~dg~~l~-s~~~D-g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~ 987 (1131)
.+...-....+++++|.+..|. +-... +.|...+++....... . . ........++++|++..|..++ .+.
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~--~---~-~~~~~PnGla~d~~~~~lY~aD~~~~~ 226 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII--A---D-THLFWPNGLTIDYAGRRMYWVDAKHHV 226 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES--C---C-SSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE--E---E-CCCCCcceEEEeCCCCEEEEEECCCCE
Confidence 3333445678999998665544 44444 7788888876332111 1 1 1114567899999888887764 578
Q ss_pred EEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEec
Q 001178 988 LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 988 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
|..+++........+... ......+++ .++.+.++-...+.|..++..+|+....+.
T Consensus 227 I~~~~~dG~~~~~~~~~~---~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 227 IERANLDGSHRKAVISQG---LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTSCSCEEEECSS---CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEeCCCCceEEEEeCC---CCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 999998753322222222 346678888 344444444466888888877777665554
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.12 E-value=0.00019 Score=88.01 Aligned_cols=196 Identities=12% Similarity=0.041 Sum_probs=111.0
Q ss_pred CeeEEEec-CCCCEEEEEe--CC----eEEEEECCCc-eeEEE-EeCCCCCeeEEEEeCCCCcEEEEEeCC-----CcEE
Q 001178 835 VVPCVALS-KNDSYVMSAG--GG----KVSLFNMMNF-KVMTT-FMSPPPASTFLAFHPQDNNIIAIGMED-----STIQ 900 (1131)
Q Consensus 835 ~i~~l~~s-~dg~~la~~~--dg----~i~vwd~~~~-~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~d-----g~I~ 900 (1131)
.+...+|| |||++||.+. +| +|+++|+.++ +.+.. +. .....++|+| |++.|+....+ ..|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence 57789999 9999998765 22 4999999998 63211 11 1134688999 77666666654 2577
Q ss_pred EEEeeccee--EEeec-ccccCeeEEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEc
Q 001178 901 IYNVRVDEV--KTKLK-GHQKHITGLAFSTNLNILVSSGS---DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFH 974 (1131)
Q Consensus 901 iwd~~~~~~--~~~~~-~h~~~V~~l~~s~dg~~l~s~~~---Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 974 (1131)
++++.++.. ...+. .+......+.|||||++|+..+. ...|.++|+.++..... ....... .......+.|+
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~-~~~l~~~-~~~~~~s~~~~ 328 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT-LEIVRPR-EKGVRYDVQMH 328 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC-EEESSCC-CTTCCEEEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce-eEEeecC-CCCceEEEeee
Confidence 778766531 22222 22334678899999999887653 34688889887521110 0111111 11334445544
Q ss_pred CCCcEEEEEeC-----CeEEEEeCCCccccee-eecCCCCCCCeEEEEEccCCCEEEEEecCCcE--EEEEC
Q 001178 975 SDQVRLLVNHE-----TQLAIYDGSKMECIRQ-WVPQDVLSSPISSAAYSCNSQLIYATFTDGSI--GVFDA 1038 (1131)
Q Consensus 975 ~d~~~l~~~~d-----~~i~vwd~~~~~~~~~-~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i--~vwd~ 1038 (1131)
.++.+++.+.. ..|..+++.++..... +..+.. ...+..+.+. .+.++++...++.. .++++
T Consensus 329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~-~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSE-DVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCS-SEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCC-CcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 44444444432 3677778765322233 333311 2244555554 33455556667754 45564
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.08 E-value=0.0011 Score=75.07 Aligned_cols=251 Identities=9% Similarity=0.027 Sum_probs=147.5
Q ss_pred CeeEEEecCC--CCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC---C-cEEEEEeecc
Q 001178 835 VVPCVALSKN--DSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED---S-TIQIYNVRVD 907 (1131)
Q Consensus 835 ~i~~l~~s~d--g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d---g-~I~iwd~~~~ 907 (1131)
....++++|+ +..|.++. .+.|+.+|..+++..... ........+++++ +++++++.... . .+..++...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999985 44555555 588999999887765543 3455689999999 77755444321 1 1333332222
Q ss_pred ee-EEeecccccCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-
Q 001178 908 EV-KTKLKGHQKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH- 984 (1131)
Q Consensus 908 ~~-~~~~~~h~~~V~~l~~s~-dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 984 (1131)
.. ...+. .-.....++++| +|.++++-..++.|+.++..++...... ..... ......++|+|++.+|.++.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~-~~~~~---~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE-VMMDT---KGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE-EECSC---CSSCEEEEECTTSSEEEEEET
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE-eccCC---CCCcccEEEeCCCCEEEEEeC
Confidence 11 01111 223456789999 6777767667888999998866542211 11111 12234699999999777654
Q ss_pred -CCeEEEEeCC--Cccc--ceeeecCCC------------CCCCeEEEEE---------ccCCCEEEEEecCCcEEEEEC
Q 001178 985 -ETQLAIYDGS--KMEC--IRQWVPQDV------------LSSPISSAAY---------SCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 985 -d~~i~vwd~~--~~~~--~~~~~~~~~------------~~~~v~~i~~---------s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
.+.|+.++.. ++.. ...+.+... .-.....+++ .++|.+.++-...+.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 5788887765 2321 112221100 0124677999 677776666556788999985
Q ss_pred CCCceeeEecCCcc------ccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1039 DSLRLRCRIAPSAY------MSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1039 ~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
+|... .+.+... ...........-.|..|++.|.++.++++=...++|+.+++.
T Consensus 373 -~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 -EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 56433 3332211 000001112234577899996677777777777888887764
No 289
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.02 E-value=0.00032 Score=84.79 Aligned_cols=251 Identities=10% Similarity=0.043 Sum_probs=142.8
Q ss_pred EEEecC-CCCEEEEEe-CC-----------eEEEEECCCcee--EEEEeC-CCCCeeEEEEeCCCCcEEEEEeC-CCcEE
Q 001178 838 CVALSK-NDSYVMSAG-GG-----------KVSLFNMMNFKV--MTTFMS-PPPASTFLAFHPQDNNIIAIGME-DSTIQ 900 (1131)
Q Consensus 838 ~l~~s~-dg~~la~~~-dg-----------~i~vwd~~~~~~--~~~~~~-~~~~i~~l~~s~~~~~~la~g~~-dg~I~ 900 (1131)
.+++.+ +|+.++.|+ +. .+.+||..+++- +..+.. +.....++++.. +++++++|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence 567777 888888876 21 588999887653 333322 233345677888 8899999984 45899
Q ss_pred EEEeecceeEEeecccccC-eeEEEEccCCCEEEEEe-CC-----CcEEEEEcCCCceeeeee---eecCCCCCCCCceE
Q 001178 901 IYNVRVDEVKTKLKGHQKH-ITGLAFSTNLNILVSSG-SD-----AQLIFWNTDTWEKRKSIA---IQLPAGKLPVGETR 970 (1131)
Q Consensus 901 iwd~~~~~~~~~~~~h~~~-V~~l~~s~dg~~l~s~~-~D-----g~v~lwd~~~~~~~~~~~---~~~~~~~~~~~v~~ 970 (1131)
+||..+.+-...-..+... -.+++..++|+.++.|| .+ ..+.+||..+.+-..... ........ .
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-----~ 343 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-----Q 343 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-----T
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc-----c
Confidence 9998876543322222222 23455667999999998 44 469999998755322100 01111110 0
Q ss_pred EEEcCCCcEEEEE----------eCCeEEEEeCCCcccceeeecCCC------CCCCeEEEEEc-cCCCEEEEEecCC--
Q 001178 971 VQFHSDQVRLLVN----------HETQLAIYDGSKMECIRQWVPQDV------LSSPISSAAYS-CNSQLIYATFTDG-- 1031 (1131)
Q Consensus 971 v~~s~d~~~l~~~----------~d~~i~vwd~~~~~~~~~~~~~~~------~~~~v~~i~~s-~dg~~l~s~~~dg-- 1031 (1131)
..+..++...+.+ ....+..||..+............ ....-.++.|. .+++++++|+.++
T Consensus 344 ~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 1122333333332 245678899887654433222110 01123455554 4788888888543
Q ss_pred ---------cEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecC-----------CcEEEE
Q 001178 1032 ---------SIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTD-----------GSVKVI 1091 (1131)
Q Consensus 1032 ---------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~D-----------g~v~iW 1091 (1131)
.|.+||..+..-....... ++.. .... .....| ++.+++.||.+ ..+.+|
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~--mp~~------R~~~-~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~y 493 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNG--LYFA------RTFH-TSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIY 493 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTC--CSSC------CBSC-EEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCC--CCCC------cccC-CeEECC-CCCEEEECCcccCcCcCCCCcccceEEE
Confidence 6788888776543322011 1111 1111 233445 67899999865 468999
Q ss_pred ecCCCccccccccCC
Q 001178 1092 EPSETERKWGVAVPV 1106 (1131)
Q Consensus 1092 ~~~~~~~~w~~~~p~ 1106 (1131)
|+.+. +|...++.
T Consensus 494 dp~t~--~W~~~~~~ 506 (656)
T 1k3i_A 494 VPEQD--TFYKQNPN 506 (656)
T ss_dssp EGGGT--EEEECCCC
T ss_pred cCCCC--ceeecCCC
Confidence 99764 48765543
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.01 E-value=0.0046 Score=65.58 Aligned_cols=197 Identities=10% Similarity=0.175 Sum_probs=125.8
Q ss_pred CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCC---CCc---EEEEEeC---CCcEEEEEee--cceeEE
Q 001178 844 NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQ---DNN---IIAIGME---DSTIQIYNVR--VDEVKT 911 (1131)
Q Consensus 844 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~---~~~---~la~g~~---dg~I~iwd~~--~~~~~~ 911 (1131)
...+++... .+.+.+||+ +++.++.+.. +.+..+..-|+ +++ ++++... +++|.+|++. +++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 334444444 678999999 8888888753 66788777761 111 3333333 5789999884 333 44
Q ss_pred eecc------cc-cCeeEEEE--ccC-CC-EEEEEeCCCcEEEEEcCC---CceeeeeeeecCCCCCCCCceEEEEcCCC
Q 001178 912 KLKG------HQ-KHITGLAF--STN-LN-ILVSSGSDAQLIFWNTDT---WEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1131)
Q Consensus 912 ~~~~------h~-~~V~~l~~--s~d-g~-~l~s~~~Dg~v~lwd~~~---~~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 977 (1131)
.+.. .. ..+..+++ ++. ++ ++++...+|.+..|++.. +............+ ..+..++..+..
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd~~ 191 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN---SQTEGMAADDEY 191 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEETTT
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC---CCcceEEEcCCC
Confidence 4321 11 55677888 774 44 688888899999999843 22222222222222 578889999988
Q ss_pred cEEEEEe-CCeEEEEeCC-----CcccceeeecCCCCCCCeEEEEE--ccCCC-EEEEEe-cCCcEEEEECC-CCceeeE
Q 001178 978 VRLLVNH-ETQLAIYDGS-----KMECIRQWVPQDVLSSPISSAAY--SCNSQ-LIYATF-TDGSIGVFDAD-SLRLRCR 1046 (1131)
Q Consensus 978 ~~l~~~~-d~~i~vwd~~-----~~~~~~~~~~~~~~~~~v~~i~~--s~dg~-~l~s~~-~dg~i~vwd~~-~~~~~~~ 1046 (1131)
..|+++. +..|..|+.+ +++.+..+.. ......+..|++ .++++ ||++++ .++++.|||.+ +.+.+..
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 8888876 5567777754 2444444321 112457888888 55666 777777 56799999997 6777777
Q ss_pred ec
Q 001178 1047 IA 1048 (1131)
Q Consensus 1047 ~~ 1048 (1131)
+.
T Consensus 271 f~ 272 (355)
T 3amr_A 271 FR 272 (355)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 291
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.01 E-value=0.0053 Score=68.59 Aligned_cols=208 Identities=9% Similarity=-0.062 Sum_probs=133.6
Q ss_pred CCCeeEEEecCCCCEEEEEe--CCeEEEEECCCc----eeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001178 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNF----KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~ 906 (1131)
...+..++|++.+..|..++ .+.|+.+++.+. .....+.........+++.+.+++++++-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678999999877777776 588999998762 233333334456889999874566666666778899998876
Q ss_pred ceeEEeecccccCeeEEEEccCCCEEEEEe-C-CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe
Q 001178 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSG-S-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH 984 (1131)
Q Consensus 907 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~-~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 984 (1131)
......+........+|++.|.+.+|.... . .+.|...+++....... .. . .-.....+++++++..|..++
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~--~~---~-~l~~P~glavd~~~~~lY~aD 264 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL--VT---E-NIQWPNGITLDLLSGRLYWVD 264 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE--EC---S-SCSCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE--EE---C-CCCceEEEEEEeCCCEEEEEE
Confidence 544444443445578999999766655544 2 36788888876432111 11 1 114567899999888888765
Q ss_pred --CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEec
Q 001178 985 --ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 985 --d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
.+.|..+|++... ...+......-....++++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 265 ~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 265 SKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp TTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred CCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 5689999987543 33332221113455677773 33444444466889999988887766654
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=0.0028 Score=71.46 Aligned_cols=256 Identities=9% Similarity=0.003 Sum_probs=148.5
Q ss_pred CeeEEEecC-CCCEEEEEe-C-CeEEEEECCCceeEEEEeCC---CCCeeEEEE-------eCCCCcEEEEEeCCC-c--
Q 001178 835 VVPCVALSK-NDSYVMSAG-G-GKVSLFNMMNFKVMTTFMSP---PPASTFLAF-------HPQDNNIIAIGMEDS-T-- 898 (1131)
Q Consensus 835 ~i~~l~~s~-dg~~la~~~-d-g~i~vwd~~~~~~~~~~~~~---~~~i~~l~~-------s~~~~~~la~g~~dg-~-- 898 (1131)
....|+|+| +...|.++. . +.|++.|+.++......... ......++| ++ ++..|.++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 567899998 455555555 3 56999999988776655432 235889999 99 666555555443 2
Q ss_pred ----EEEEEeec-ceeE-----EeecccccCeeEEEEccC-CCEEEEEeCCCcEEEEEcC-------CCce------e--
Q 001178 899 ----IQIYNVRV-DEVK-----TKLKGHQKHITGLAFSTN-LNILVSSGSDAQLIFWNTD-------TWEK------R-- 952 (1131)
Q Consensus 899 ----I~iwd~~~-~~~~-----~~~~~h~~~V~~l~~s~d-g~~l~s~~~Dg~v~lwd~~-------~~~~------~-- 952 (1131)
|.+++... +... ..+... .....++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 66665343 2221 122211 23457889995 5556666778889999997 4432 0
Q ss_pred --eeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCC--Cccc--ceeeecC---CCC---------CCCe
Q 001178 953 --KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGS--KMEC--IRQWVPQ---DVL---------SSPI 1012 (1131)
Q Consensus 953 --~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~--~~~~--~~~~~~~---~~~---------~~~v 1012 (1131)
......... ......++|+|+|.+|.++. ...|+.++.. .+.. ...+.+. .+. -...
T Consensus 298 g~~~~l~~~~~---~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 298 NTFKQLFTIAD---PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp TTEEEEEECSS---SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred cccceeEecCC---CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 011122221 13457899999999766654 5678885543 3321 1122221 000 1123
Q ss_pred E-EEEEc-------cCCCEEEEEecCCcEEEEECCCCceeeEecCCccc------------cCCCCCCCCccccEEEEEc
Q 001178 1013 S-SAAYS-------CNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYM------------SQASPNSSQTVFPLVVTSH 1072 (1131)
Q Consensus 1013 ~-~i~~s-------~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~v~~~~v~~~ 1072 (1131)
. .++.. ++|.+.++=...+.|+.++ .+|. +..+.+.... ..........-.|..|++.
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 4 45554 4566555555678999999 5564 4444432110 0001112233567789998
Q ss_pred CCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1073 PQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1073 p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
+.++.++++=...++|+.+++..+.
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCCC
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCc
Confidence 8546677766677889998887654
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.89 E-value=0.011 Score=63.47 Aligned_cols=231 Identities=10% Similarity=0.029 Sum_probs=140.9
Q ss_pred CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEecCCCcccee
Q 001178 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQGSNDLCQS 447 (1131)
Q Consensus 369 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l-as~~~d~~i~vwd~~~~~~~~~~ 447 (1131)
...|+..|+.+....... .. .....+..++|++.+..| .+-...+.|..++..++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~~-----------------~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENATI-----------------VV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCEE-----------------EE-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEEE-----------------Ee-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 568999999875421110 01 112356789999965554 4445668899999887632211
Q ss_pred eeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec-CCccCeEEEeecccCCccEEEEEe--cCCeEE
Q 001178 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTA--VDGKIK 524 (1131)
Q Consensus 448 ~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s--~dg~i~ 524 (1131)
.+...-.....+++.+.+.. ++++-...+.|.+++..|.....+. ........+++.+.. ..|+.+. ..+.|.
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I~ 148 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIE 148 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEEE
Confidence 12222345778999976654 5566667789999997776554443 344567888886543 3444443 357888
Q ss_pred EEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEE
Q 001178 525 AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRIL 604 (1131)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 604 (1131)
..+++...........-...+.+++++++..|+.+-. ..+.|..+|.... ..+.+..........+++.. +..++
T Consensus 149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~-~~~~~~~~~~~~P~glav~~-~~lyw 223 (318)
T 3sov_A 149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLFE-DILYW 223 (318)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSC-SCEEEECSCCSCEEEEEEET-TEEEE
T ss_pred EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCC-ceEEEecCCCCCceEEEEeC-CEEEE
Confidence 8887754433333333446789999998888887753 3678999997643 33333221222445566642 33444
Q ss_pred EEEcCCcEEEEEcCCCeEEEEEe
Q 001178 605 AAGEDNQIKFWDMDNVNMLTSTE 627 (1131)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~ 627 (1131)
+-...+.|..++..+++....+.
T Consensus 224 td~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 224 TDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EETTTTEEEEEETTTCCSCEEEE
T ss_pred EecCCCeEEEEECCCCCceEEEe
Confidence 54566788888887776555544
No 294
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.83 E-value=0.0025 Score=72.05 Aligned_cols=240 Identities=9% Similarity=0.123 Sum_probs=135.7
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC----cEEEEeC
Q 001178 411 SVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK----LIRVWDL 485 (1131)
Q Consensus 411 ~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~----~i~iwd~ 485 (1131)
....|+|+| ++..|.++...+.|+.+|..++.. . .+.........++|+++++. ++++...++ .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-~---~~~~~~~~P~~ia~d~~G~~-lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-S---TVYSGLSKVRTICWTHEADS-MIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-E---EEECCCSCEEEEEECTTSSE-EEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-E---EEecCCCCcceEEEeCCCCE-EEEEeCCCCcccceEEEEeC
Confidence 567899998 455666665557899999887542 2 23334456889999999984 333433222 3333444
Q ss_pred CCcee--EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec-CCCceEEEEEEccCCCEEEEEeec
Q 001178 486 SGRKL--FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-APGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 486 ~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.+... ..+.. ......+++++. ++.++++-..++.|..++.+......... ........++|+|+|++|+.+..
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~- 289 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV- 289 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET-
T ss_pred CCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC-
Confidence 44332 22221 223455666542 45666666678899999988655422222 22235678999999997766643
Q ss_pred CCCCceEEEEeCCC--Cee--eEEEeccc------C--------CceE-EEEEe--------CCCCEEEEEEcCCcEEEE
Q 001178 563 KEGDSHLVEWNESE--GAL--KRTYIGFR------K--------KSAG-VVQFD--------TTRNRILAAGEDNQIKFW 615 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~--~~~--~~~~~~~~------~--------~~v~-~~~~s--------~~~~~l~~~~~dg~i~iw 615 (1131)
..+.|..++... +.. ...+.+.. + .... .++.. +++..+++-...+.|+.+
T Consensus 290 --~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i 367 (430)
T 3tc9_A 290 --NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRIL 367 (430)
T ss_dssp --TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEE
T ss_pred --CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEE
Confidence 267888877542 322 22232210 0 0112 45553 334444554556788888
Q ss_pred EcCCCeEEEEEec---------cC------CCCCcceEEEcCC-CCEEEEEECCCcEEEEec
Q 001178 616 DMDNVNMLTSTEA---------EG------GLPSLPRLRFNKE-GNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 616 d~~~~~~~~~~~~---------~~------~~~~i~~v~~sp~-~~~l~~~~~dg~i~iw~~ 661 (1131)
+. .+........ .+ .......++++|+ +.++++-..++.|+.++.
T Consensus 368 ~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 368 TP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp CT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 83 4544433321 00 0113567888884 554444445667777765
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.83 E-value=0.0058 Score=65.71 Aligned_cols=210 Identities=12% Similarity=0.016 Sum_probs=130.2
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC-EEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-FIG 425 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~-~la 425 (1131)
...+.+++|++.+..++.+-...+.|..++..++..... +....-.....+++.+.+. ++.
T Consensus 34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~ 95 (318)
T 3sov_A 34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYW 95 (318)
T ss_dssp EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEE
T ss_pred CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEE
Confidence 346789999997666777777788999999876632110 1111223466899998555 445
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEE-cCCCcEEEEeCCCceeEEec-CCccCeEEE
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC-GDDKLIRVWDLSGRKLFQFE-GHEAPVYSV 503 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~-~h~~~v~~~ 503 (1131)
+-...+.|.++++++... .. .+.........+++.|.+.. ++++- +..+.|...+..|.....+. ..-.....+
T Consensus 96 ~d~~~~~I~~~~~dG~~~-~~--l~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 96 TDSETNRIEVSNLDGSLR-KV--LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EETTTTEEEEEETTSCSC-EE--EECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred EECCCCEEEEEECCCCcE-EE--EEeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 555678899999876432 11 12234456789999997664 34443 34577888887776554442 223456788
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
++++.. +.+.++-+..+.|..+|++.................+++. +..++.+.. ..+.|..++..+|+....+
T Consensus 172 avd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~---~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 172 TLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDW---STHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEET---TTTEEEEEETTTCCSCEEE
T ss_pred EEeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEec---CCCeEEEEECCCCCceEEE
Confidence 886533 3455555677899999987644443333334456677775 334444432 3678888888777665555
Q ss_pred e
Q 001178 584 I 584 (1131)
Q Consensus 584 ~ 584 (1131)
.
T Consensus 246 ~ 246 (318)
T 3sov_A 246 H 246 (318)
T ss_dssp E
T ss_pred e
Confidence 4
No 296
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.80 E-value=0.028 Score=58.19 Aligned_cols=260 Identities=8% Similarity=0.081 Sum_probs=155.6
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~ 645 (1131)
..+|.+.|+.++..+....- ...+.-++|..+.++.-. ...+.+||+++.+.+....... .|..-.|-.+.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi----~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis~~- 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 118 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC----CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CEEEEEECSSS-
T ss_pred CCEEEEEECCCCCCcccccc----ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC---ccEEEEecCCC-
Confidence 44788889888665433222 222355788888776654 7889999999999998887654 46666665543
Q ss_pred EEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccc
Q 001178 646 LLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAA 725 (1131)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~ 725 (1131)
.|+..+ +..|+-|++.......+.+..|..-
T Consensus 119 ~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L------------------------------------------------ 149 (365)
T 2xzh_A 119 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 149 (365)
T ss_dssp EEEEEE-SSEEEEEESSTTCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEc-CCcEEEEcccCCCCCceeeecchhc------------------------------------------------
Confidence 454444 4588999986532222222111100
Q ss_pred cCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeee-------cceeeEEeecC
Q 001178 726 RGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS-------NGVQKLWKWNR 798 (1131)
Q Consensus 726 ~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~iw~~~~ 798 (1131)
...+|.....+++.++++..+- .|.+.+|..+.
T Consensus 150 ----------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 189 (365)
T 2xzh_A 150 ----------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 189 (365)
T ss_dssp ----------------------------------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred ----------------------------------------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc
Confidence 1244555666677776665543 25556665544
Q ss_pred CCCC-CCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC---CCCEEEEEe----CCeEEEEECCCc---e--
Q 001178 799 TEQN-PSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK---NDSYVMSAG----GGKVSLFNMMNF---K-- 865 (1131)
Q Consensus 799 ~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~---dg~~la~~~----dg~i~vwd~~~~---~-- 865 (1131)
.... .+ +|......+.+.. ..+.++.+. .++++|.++... .
T Consensus 190 ~~sQ~ie--------------------------Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~ 243 (365)
T 2xzh_A 190 KVSQPIE--------------------------GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP 243 (365)
T ss_dssp TEEEEEC--------------------------CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCC
T ss_pred cccceee--------------------------eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCC
Confidence 2111 11 1211111111100 011233332 267899988432 1
Q ss_pred ----eEEEEeC---CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCC
Q 001178 866 ----VMTTFMS---PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD 938 (1131)
Q Consensus 866 ----~~~~~~~---~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 938 (1131)
....+-. ...-..++..|+ .-.++..-+.-|.|++||++++.++..-+--...|..-+.+.+..-++.....
T Consensus 244 f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~ 322 (365)
T 2xzh_A 244 FPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRK 322 (365)
T ss_dssp CCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred cccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCC
Confidence 1111111 234467888888 66788889999999999999999998887777788777766665567777788
Q ss_pred CcEEEEEcCCCc
Q 001178 939 AQLIFWNTDTWE 950 (1131)
Q Consensus 939 g~v~lwd~~~~~ 950 (1131)
|.|.--.++...
T Consensus 323 GqVl~v~v~~~~ 334 (365)
T 2xzh_A 323 GQVLSVCVEEEN 334 (365)
T ss_dssp CEEEEEEECTTT
T ss_pred CEEEEEEECccc
Confidence 888777776643
No 297
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.72 E-value=0.055 Score=56.03 Aligned_cols=235 Identities=10% Similarity=0.090 Sum_probs=143.5
Q ss_pred EEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 001178 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHL 432 (1131)
Q Consensus 353 ~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~ 432 (1131)
.-.+|..+ ++|.-. ..++.|+|+++.++++... ....|..=.|-.+. .|+..+ +..
T Consensus 72 AIMnP~~~-ViALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis~~-~L~lVT-~ta 127 (365)
T 2xzh_A 72 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLN-TVALVT-DNA 127 (365)
T ss_dssp EEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCEEEEEECSSS-EEEEEE-SSE
T ss_pred eeeCCCcc-EEEEec-CCeEEEechHHhhhhccee--------------------cCCccEEEEecCCC-eEEEEc-CCc
Confidence 33477776 666654 5789999999988776321 13467777776554 444443 357
Q ss_pred EEEEEecCCCccceeeeeecC----cCCeeEEEEecCCCceEEEEEc------CCCcEEEEeCCCceeEEecCCccCeEE
Q 001178 433 IHLYTYQGSNDLCQSLEIDAH----VGGVNDLAFSYPNKQLCIVTCG------DDKLIRVWDLSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 433 i~vwd~~~~~~~~~~~~~~~h----~~~V~~l~~s~d~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~h~~~v~~ 502 (1131)
|.-|++.+.....+ .+.-| ...|..-..+++.++ ++++|= -.|.+.+|..+.+.-+.+.||.+.-..
T Consensus 128 VyHWs~~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~ 204 (365)
T 2xzh_A 128 VYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQ 204 (365)
T ss_dssp EEEEESSTTCCCEE--EEECCGGGTTCEEEEEEECTTSCE-EEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEE
T ss_pred EEEEcccCCCCCce--eeecchhcccceEEEEEECCCCCE-EEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEE
Confidence 99999986443322 23333 245777788889996 333332 246788999888888889999876655
Q ss_pred EeecccCCccEE-EEEec---CCeEEEEeCCCC---ce-----eEEecC----CCceEEEEEEccCCCEEEEEeecCCCC
Q 001178 503 VCPHQKENIHFI-FSTAV---DGKIKAWLYDNV---GS-----RVDYDA----PGLWCTTMLYSADGSRLFSCGTSKEGD 566 (1131)
Q Consensus 503 ~~~~~~~~~~~l-~s~s~---dg~i~~wd~~~~---~~-----~~~~~~----~~~~v~~~~~s~~g~~l~~~~~~~~~~ 566 (1131)
+.+...+....| ..+.. .+.+++-++... .. ...+.. ..+-.-++..++.-..+...+. -
T Consensus 205 ~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK----~ 280 (365)
T 2xzh_A 205 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y 280 (365)
T ss_dssp ECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET----T
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC----C
Confidence 554333222233 33322 268888888543 11 111111 1334567788887777777765 8
Q ss_pred ceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
|.|++||++++.++..-+-..+ .|...+-.....-+++....|.|.--.++.
T Consensus 281 G~ihlyDleTgt~i~~nrIS~d-~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 281 GYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp SEEEEEETTTCCEEEEEECCSS-CEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred cEEEEEEcccCcEEEEeccCCC-ceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 9999999999998876554333 444444444444455555555554444433
No 298
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.70 E-value=0.007 Score=68.31 Aligned_cols=239 Identities=8% Similarity=0.092 Sum_probs=135.4
Q ss_pred CCEEEEEEcCC--CCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC---Cc-EEEE
Q 001178 410 ISVSRVAWSPD--GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD---KL-IRVW 483 (1131)
Q Consensus 410 ~~V~~~~~spd--g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d---~~-i~iw 483 (1131)
.....++|+|+ +..|..+...+.|+.+|..++... .+.........++|+++|+ ++++.... .. +...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~----~~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD----IKTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE----EECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE----EeecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 34668999995 444555544488999998776532 2333445689999999999 55555421 22 3333
Q ss_pred eCCCcee--EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE-e-cCCCceEEEEEEccCCCEEEEE
Q 001178 484 DLSGRKL--FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-Y-DAPGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 484 d~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~-~~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
+..+... ..+. .-.....+++++. ++.+.++-..++.|+.++..++..... + ......-..++++|+|++|+.+
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 4222111 1111 1233445666542 445555666778899999875554121 1 1122233579999999977766
Q ss_pred eecCCCCceEEEEeCC--CCee--eEEEeccc--------------CCceEEEEE---------eCCCCEEEEEEcCCcE
Q 001178 560 GTSKEGDSHLVEWNES--EGAL--KRTYIGFR--------------KKSAGVVQF---------DTTRNRILAAGEDNQI 612 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~~--~~~~--~~~~~~~~--------------~~~v~~~~~---------s~~~~~l~~~~~dg~i 612 (1131)
.. ..+.|+.++.. ++.. ...+.+.. -.....+++ .+++.++++-...+.|
T Consensus 291 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 291 YN---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ET---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred eC---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 43 36788887754 3322 12222210 012455888 6666666665667889
Q ss_pred EEEEcCCCeEEEEEeccCC----------------CCCcceEEEc-CCCCEEEEEECCCcEEEEec
Q 001178 613 KFWDMDNVNMLTSTEAEGG----------------LPSLPRLRFN-KEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~----------------~~~i~~v~~s-p~~~~l~~~~~dg~i~iw~~ 661 (1131)
+.++. ++... .+...+. ......++++ ++|.++++=..++.|+.+++
T Consensus 368 ~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 368 RVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 99985 55433 3322111 1124578888 55555555455667777665
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.65 E-value=0.016 Score=70.29 Aligned_cols=217 Identities=8% Similarity=-0.050 Sum_probs=130.6
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
.+.....+..++|++.+.+|+.+-...+.|+.+++........ ...++...-.....|++.+.++
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~---------------~~~vi~~~l~~P~GLAvD~~~~ 483 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDIQAPDGLAVDWIHS 483 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CEEEECSSCSCCCEEEEETTTT
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc---------------eeEEEecCCCCcceeeeeecCC
Confidence 3345567889999997666777777778899999875321100 0002222344567899998776
Q ss_pred EEEEE-eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEE-cCCCcEEEEeCCCceeEEecC-CccC
Q 001178 423 FIGVA-FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC-GDDKLIRVWDLSGRKLFQFEG-HEAP 499 (1131)
Q Consensus 423 ~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~-h~~~ 499 (1131)
.|..+ ...+.|.+.++.+.. ... .+.........|++.|.+.. ++++- +..+.|.+.+..|.....+.. .-..
T Consensus 484 ~LY~tD~~~~~I~v~~ldG~~-~~~--l~~~~l~~P~gIaVDp~~g~-LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~ 559 (791)
T 3m0c_C 484 NIYWTDSVLGTVSVADTKGVK-RKT--LFRENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 559 (791)
T ss_dssp EEEEEETTTTEEEEEETTSSS-EEE--EEECTTCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred cEEEEecCCCeEEEEeCCCCe-EEE--EEeCCCCCcceEEEecCCCC-EEEecCCCCCeEEEEecCCCceEEEEeCCCCC
Confidence 55544 566889999987643 221 12234456889999998764 33443 334778888887876665543 2356
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC--CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC
Q 001178 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP--GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1131)
...|++.+.. +.+.++-...+.|...+++........... -....+|++ .+.+|+.+.. ..+.|...+..+|
T Consensus 560 P~GLavD~~~-~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~---~~~~I~~~dk~tG 633 (791)
T 3m0c_C 560 PNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI---INEAIFSANRLTG 633 (791)
T ss_dssp EEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEET---TTTEEEEEETTTC
T ss_pred ceEEEEecCC-CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEEC---CCCEEEEEeCCCC
Confidence 7888886543 344444456678999998765544443322 123445555 3445555532 2567777777777
Q ss_pred eeeEEEe
Q 001178 578 ALKRTYI 584 (1131)
Q Consensus 578 ~~~~~~~ 584 (1131)
+.+..+.
T Consensus 634 ~~~~~l~ 640 (791)
T 3m0c_C 634 SDVNLLA 640 (791)
T ss_dssp CCCEEEE
T ss_pred cceEEee
Confidence 6655554
No 300
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.63 E-value=0.046 Score=66.22 Aligned_cols=211 Identities=10% Similarity=-0.015 Sum_probs=127.7
Q ss_pred CCCEEEEEEcCCCCEEE-EEeCCCeEEEEEecCCCcc-ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCC
Q 001178 409 SISVSRVAWSPDGNFIG-VAFTKHLIHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~la-s~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~ 486 (1131)
...+..|+|++.+..|. +-...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.+..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence 45678999999655544 4455678999998763210 111122324456788999988865 56677778899999977
Q ss_pred CceeEEec-CCccCeEEEeecccCCccEEEEEec-CCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCC
Q 001178 487 GRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAV-DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKE 564 (1131)
Q Consensus 487 ~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 564 (1131)
|+....+. ........|++.+.. +.++++-.. .+.|...+++.......+...-.....|++++.+..|+.+-.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~--- 577 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS--- 577 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---
T ss_pred CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---
Confidence 77665554 334457888886543 233344323 378888888765554444444457899999998888887743
Q ss_pred CCceEEEEeCCCCeeeEEEeccc-CCceEEEEEeCCCCEEEEE-EcCCcEEEEEcCCCeEEEEE
Q 001178 565 GDSHLVEWNESEGALKRTYIGFR-KKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDNVNMLTST 626 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~ 626 (1131)
....|...++........+.... -.....+++. +.+|+.+ ...+.|...+..+++.+..+
T Consensus 578 ~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 35689999986443333333211 1123344443 3344444 34566777776666555444
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.58 E-value=0.13 Score=55.56 Aligned_cols=261 Identities=9% Similarity=0.103 Sum_probs=158.6
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~ 645 (1131)
..++.+.|+.++..+....- ...+.-++|..+.++.-. ..++.|||+++...+....... .|..-.|-.+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~~- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC----CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEETT-
T ss_pred CCeEEEEECCCCCcceeccc----ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCCC-
Confidence 44788899888665533222 223455788887666654 7899999999999998887655 45555665433
Q ss_pred EEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccc
Q 001178 646 LLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAA 725 (1131)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~ 725 (1131)
.|+..+ +..|+-|++.......+.+..|..
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~------------------------------------------------- 147 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSS------------------------------------------------- 147 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGG-------------------------------------------------
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchh-------------------------------------------------
Confidence 444443 558999998653222222211110
Q ss_pred cCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeee-------cceeeEEeecC
Q 001178 726 RGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS-------NGVQKLWKWNR 798 (1131)
Q Consensus 726 ~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~iw~~~~ 798 (1131)
-...+|.....+++.++++..|- .|.+.+|..+.
T Consensus 148 ---------------------------------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 148 ---------------------------------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp ---------------------------------------GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred ---------------------------------------cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 01245556666777777765543 25566665544
Q ss_pred CCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCC---CCEEEEEe----CCeEEEEECCCc-------
Q 001178 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN---DSYVMSAG----GGKVSLFNMMNF------- 864 (1131)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d---g~~la~~~----dg~i~vwd~~~~------- 864 (1131)
....+ + ++|......+.+..+ .+.++.+. .++++|.++...
T Consensus 189 ~~sQ~------------------------i-eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f 243 (494)
T 1bpo_A 189 KVSQP------------------------I-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (494)
T ss_dssp CCEEE------------------------E-CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred cccch------------------------h-eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence 21110 0 122222222221111 11333333 378999988532
Q ss_pred -eeEEE-Ee---CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCC
Q 001178 865 -KVMTT-FM---SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA 939 (1131)
Q Consensus 865 -~~~~~-~~---~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg 939 (1131)
+.... +- ....-..++..|+ .-.++..-+.-|.|++||++++.++..-+--...|..-+.+....-++.....|
T Consensus 244 ~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~G 322 (494)
T 1bpo_A 244 PKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 322 (494)
T ss_dssp CCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTC
T ss_pred cceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCc
Confidence 11111 11 1234467888998 667888899999999999999999988877777887777776666777777899
Q ss_pred cEEEEEcCCCc
Q 001178 940 QLIFWNTDTWE 950 (1131)
Q Consensus 940 ~v~lwd~~~~~ 950 (1131)
.|.--.++...
T Consensus 323 qVl~v~v~e~~ 333 (494)
T 1bpo_A 323 QVLSVCVEEEN 333 (494)
T ss_dssp EEEEEEECTTT
T ss_pred eEEEEEEcccc
Confidence 88877777644
No 302
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.54 E-value=0.00055 Score=82.56 Aligned_cols=207 Identities=9% Similarity=-0.065 Sum_probs=124.7
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCC----ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMN----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~ 907 (1131)
..+..++|++++..|..+. .+.|+.+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456789999888888776 57899999875 22222222222345678888646666666566788999998755
Q ss_pred eeEEeecccccCeeEEEEccCCCEEEEEeC-C-CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-
Q 001178 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGS-D-AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH- 984 (1131)
Q Consensus 908 ~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~-D-g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 984 (1131)
.....+.........|+++|++.+|+.+.. . +.|...++....... ... . .......|+++|++..|+.+.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~---~-~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT---E-NIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESC---S-SCSSCCCEEECTTTCCEEEEET
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEe---C-CCCCccEEEEeccCCEEEEEec
Confidence 443333333345678999987655554432 2 678777776532111 110 0 113456799999887777754
Q ss_pred -CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEec
Q 001178 985 -ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 985 -d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
.+.|.++++.... ...+...........+|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 560 ~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 560 KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp TTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 5679999987432 2333221111223445566443 344444456899999988888776664
No 303
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.54 E-value=0.047 Score=61.52 Aligned_cols=162 Identities=14% Similarity=0.111 Sum_probs=96.5
Q ss_pred cEEEEEEec-CCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE-------cCC
Q 001178 349 SVVSMDFHP-FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW-------SPD 420 (1131)
Q Consensus 349 ~V~~~~fsp-dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-------spd 420 (1131)
....|+|+| ++..|+++-...+.|++.|..++....... .-.........++| +++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~----------------~~~~~~~~p~~ia~~~~~~~~d~~ 203 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLN----------------INTIPTNRIRSIAFNKKIEGYADE 203 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEEC----------------CTTSSCSBEEEEEECCCBTTTBCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEc----------------cCccccCCCcEEEEeecccccCCC
Confidence 578999999 455566665555779999988776543100 00112346899999 999
Q ss_pred CCEEEEEeCCC-------eEEEEEecC-CCccc-e-eeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-C----
Q 001178 421 GNFIGVAFTKH-------LIHLYTYQG-SNDLC-Q-SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L---- 485 (1131)
Q Consensus 421 g~~las~~~d~-------~i~vwd~~~-~~~~~-~-~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~---- 485 (1131)
|++|.++...+ .|.+.+... +.... . ...+.. -.....++++|++.. ++++-..++.|..+| .
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence 99666665543 255665443 22210 0 011211 123467889996554 667777888899999 4
Q ss_pred ---CCce-----------eEEe-c-CCccCeEEEeecccCCccE-EEEEecCCeEEEEeCCC
Q 001178 486 ---SGRK-----------LFQF-E-GHEAPVYSVCPHQKENIHF-IFSTAVDGKIKAWLYDN 530 (1131)
Q Consensus 486 ---~~~~-----------~~~~-~-~h~~~v~~~~~~~~~~~~~-l~s~s~dg~i~~wd~~~ 530 (1131)
++.. ...+ . +.......++|++ ++++ .++-+....|+.++.+.
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCC
Confidence 3443 1121 1 2233457888865 4564 44556678888876643
No 304
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.52 E-value=0.021 Score=60.05 Aligned_cols=205 Identities=11% Similarity=0.053 Sum_probs=126.4
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCC-----CC--CeeEEEE---eCCCCcEEEEEeC------
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP-----PP--ASTFLAF---HPQDNNIIAIGME------ 895 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-----~~--~i~~l~~---s~~~~~~la~g~~------ 895 (1131)
-...+++|.+....+..++ .++|..|+..++......... .. .+..+.+ .| +++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence 3345789988666666666 799999999866544332211 11 3578999 68 6888886542
Q ss_pred -------CCcEEEEEee---cceeEEeec--ccc-----------cCeeEEEEccCCCEEEEEeCC-CcEEEEEcCCCce
Q 001178 896 -------DSTIQIYNVR---VDEVKTKLK--GHQ-----------KHITGLAFSTNLNILVSSGSD-AQLIFWNTDTWEK 951 (1131)
Q Consensus 896 -------dg~I~iwd~~---~~~~~~~~~--~h~-----------~~V~~l~~s~dg~~l~s~~~D-g~v~lwd~~~~~~ 951 (1131)
+..|..||+. +++.+.... +.. .....++..++|+..++++.- +.|...+.+...
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~- 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT- 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-
Confidence 5779999998 776654332 221 247899999999999998888 877777666532
Q ss_pred eeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCccc--ceeee-cCCCCCCCeEEE-EEccCCCEEEE
Q 001178 952 RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMEC--IRQWV-PQDVLSSPISSA-AYSCNSQLIYA 1026 (1131)
Q Consensus 952 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~~~--~~~~~-~~~~~~~~v~~i-~~s~dg~~l~s 1026 (1131)
........+..........|+++|+|..|++. ..+.+..+|+.+... +..-. +....-.....+ ..-.+|+.|++
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence 22222222222223457799999999988875 478899999884322 11100 110011233443 33457887444
Q ss_pred E-ecCCcEEEEECCC
Q 001178 1027 T-FTDGSIGVFDADS 1040 (1131)
Q Consensus 1027 ~-~~dg~i~vwd~~~ 1040 (1131)
+ ...+.+.+.+.+.
T Consensus 251 ~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 251 GARAPYAISFRSWDN 265 (334)
T ss_dssp EEETTEEEEEECSST
T ss_pred EcCCCCEEEEECCCC
Confidence 4 4556555555443
No 305
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=97.51 E-value=6.2e-05 Score=60.41 Aligned_cols=35 Identities=34% Similarity=0.460 Sum_probs=32.9
Q ss_pred CCcchHHHHHHHHHhhhhccHHHHHHHHHHhcCCC
Q 001178 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFF 35 (1131)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1131)
|++++.||.+||+.||+|.||..||.+|++||+|.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999983
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.46 E-value=0.11 Score=56.12 Aligned_cols=237 Identities=11% Similarity=0.111 Sum_probs=145.9
Q ss_pred EEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCC
Q 001178 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1131)
Q Consensus 352 ~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~ 431 (1131)
+.-.+|..+ ++|.-. ..++.|+|+++.+.++...+ ...|..=.|-.+. .|+..+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CC
Confidence 344567666 566554 67999999999887763221 2356666665443 444443 45
Q ss_pred eEEEEEecCCCccceeeeeecC----cCCeeEEEEecCCCceEEEEEc------CCCcEEEEeCCCceeEEecCCccCeE
Q 001178 432 LIHLYTYQGSNDLCQSLEIDAH----VGGVNDLAFSYPNKQLCIVTCG------DDKLIRVWDLSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h----~~~V~~l~~s~d~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~h~~~v~ 501 (1131)
.|.-|++.+.....+ .+.-| ...|..-..++|.++ ++++|= -.|.+.+|..+.+.-+.+.||.+.-.
T Consensus 126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 202 (494)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEE
T ss_pred eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeeccccccchheeeeeeeE
Confidence 799999976443322 23333 245777888899996 333332 24678899988888888899987766
Q ss_pred EEeecccCCccEEE-EEec---CCeEEEEeCCCC---ce-----eEEec----CCCceEEEEEEccCCCEEEEEeecCCC
Q 001178 502 SVCPHQKENIHFIF-STAV---DGKIKAWLYDNV---GS-----RVDYD----APGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~-s~s~---dg~i~~wd~~~~---~~-----~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
.+.+........|+ .+.. .+.+++-++... .. ...+. ...+-..++..++.-..+.....
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK---- 278 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----
Confidence 66554333222333 3333 278899888643 11 11111 11334567888888888877775
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1131)
-|.|++||++++.++..-+-..+ .+...+......-+++....|.|.--.++..
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred CceEEEEecccceeeeeecccCC-ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 89999999999998876654333 5555555544455555556665555444443
No 307
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.46 E-value=0.0095 Score=63.17 Aligned_cols=191 Identities=13% Similarity=0.114 Sum_probs=115.9
Q ss_pred CcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccC----CC---E-EEEEeC--CCcEEEEEcC--CCceeee
Q 001178 887 NNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN----LN---I-LVSSGS--DAQLIFWNTD--TWEKRKS 954 (1131)
Q Consensus 887 ~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~d----g~---~-l~s~~~--Dg~v~lwd~~--~~~~~~~ 954 (1131)
..+++.....+-+.+||+ +|+.+..+.. +.+..+..-|+ |+ + +++.-. +++|.+|+++ +++ ...
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 345666667788999999 8888888764 56777777663 22 2 333333 5789999774 322 111
Q ss_pred eeeec--CCCCCCCCceEEEE--cCC-Cc-EEEE-EeCCeEEEEeCC-------CcccceeeecCCCCCCCeEEEEEccC
Q 001178 955 IAIQL--PAGKLPVGETRVQF--HSD-QV-RLLV-NHETQLAIYDGS-------KMECIRQWVPQDVLSSPISSAAYSCN 1020 (1131)
Q Consensus 955 ~~~~~--~~~~~~~~v~~v~~--s~d-~~-~l~~-~~d~~i~vwd~~-------~~~~~~~~~~~~~~~~~v~~i~~s~d 1020 (1131)
. ... +.......+..+++ +|. ++ ++++ ..++.+..|++. +.+.++.+... +.+-.+...+.
T Consensus 116 i-~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 116 M-TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp C-SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred c-cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence 1 000 10011145566777 774 44 4444 457899998882 34556666553 57888899999
Q ss_pred CCEEEEEecCCcEEEEECC-----CCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEe-cCCcEEEEecC
Q 001178 1021 SQLIYATFTDGSIGVFDAD-----SLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGL-TDGSVKVIEPS 1094 (1131)
Q Consensus 1021 g~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~-~Dg~v~iW~~~ 1094 (1131)
..+|+.+-+|..|..|+.+ +++.+..+.... -...+..+.+-..+....+|++.+ .++++.+||..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~--------l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH--------LTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSS--------BCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCc--------cccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999999999777777755 344554442211 011244455544443222455555 68899999996
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.38 E-value=0.06 Score=58.75 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=63.3
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEECCCcee--EEEEe---CCCCCeeEEEEeCC---CCcEEEEEeCC-----CcEE
Q 001178 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKV--MTTFM---SPPPASTFLAFHPQ---DNNIIAIGMED-----STIQ 900 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~s~~---~~~~la~g~~d-----g~I~ 900 (1131)
.....++|.|||+++++-..|.|.+++ +++. +..+. ........++|+|+ ++.+.++-..+ +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 346799999999977665589999998 4432 22221 12356889999993 25555544433 5688
Q ss_pred EEEeecce-----eE-Eeec---ccccCeeEEEEccCCCEEEEEe
Q 001178 901 IYNVRVDE-----VK-TKLK---GHQKHITGLAFSTNLNILVSSG 936 (1131)
Q Consensus 901 iwd~~~~~-----~~-~~~~---~h~~~V~~l~~s~dg~~l~s~~ 936 (1131)
.|+...+. .+ ..+. +.......++|.|||.++++.+
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 88876431 11 2233 1111236899999998777754
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.38 E-value=0.061 Score=58.69 Aligned_cols=230 Identities=12% Similarity=0.100 Sum_probs=123.2
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEECCCce-eEEEEe---CCCCCeeEEEEeCC---CCcEEEEEeC---C----CcE
Q 001178 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMMNFK-VMTTFM---SPPPASTFLAFHPQ---DNNIIAIGME---D----STI 899 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---~~~~la~g~~---d----g~I 899 (1131)
.....|+|.|||+++++-.+|.|++++. +++ .+..+. ........++++|+ ++.+.++-+. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3467899999999777666899999974 444 222221 12346889999994 3555554432 3 567
Q ss_pred EEEEeecc-------eeE-Eeecc-cccCeeEEEEccCCCEEEEEeCC-------------CcEEEEEcCCCcee-----
Q 001178 900 QIYNVRVD-------EVK-TKLKG-HQKHITGLAFSTNLNILVSSGSD-------------AQLIFWNTDTWEKR----- 952 (1131)
Q Consensus 900 ~iwd~~~~-------~~~-~~~~~-h~~~V~~l~~s~dg~~l~s~~~D-------------g~v~lwd~~~~~~~----- 952 (1131)
..|+.... +.+ ..+.. .......|+|.|||.++++.+.. |.|.-.+.+..-..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~ 187 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP 187 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence 77776543 111 11221 11124679999999887775432 34554544431000
Q ss_pred eeeeeecCCCCCCCCceEEEEcC-CCcEEEEEe--CC--eEEEEeCCCcc------------------cceeeecCCCCC
Q 001178 953 KSIAIQLPAGKLPVGETRVQFHS-DQVRLLVNH--ET--QLAIYDGSKME------------------CIRQWVPQDVLS 1009 (1131)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~--d~--~i~vwd~~~~~------------------~~~~~~~~~~~~ 1009 (1131)
...... .+. .....++|+| +|.+.++-. +. .|.+.. .+. .+..+.. ..
T Consensus 188 ~~~i~a--~G~--rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~---~~ 258 (354)
T 3a9g_A 188 NSPIWS--YGH--RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS---ET 258 (354)
T ss_dssp TCCEEE--ECC--SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT---CC
T ss_pred CCcEEE--Ecc--CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC---CC
Confidence 000000 011 2456899999 566555522 21 243332 221 1111101 13
Q ss_pred CCeEEEEEc-------cCCCEEEEEecCCcEEEEECCCC-ceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEE
Q 001178 1010 SPISSAAYS-------CNSQLIYATFTDGSIGVFDADSL-RLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAV 1081 (1131)
Q Consensus 1010 ~~v~~i~~s-------~dg~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s 1081 (1131)
.....++|. .+|+++++....+.|...+++.. +...... ... ...-.+..+++.| |+.++++
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~------~~~~rp~~v~~~p-DG~lyv~ 328 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFK------NVFGRLRDVVIDD-DGGILIS 328 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECT------TTSCCEEEEEECT-TSCEEEE
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---ecc------CCCCCeeEEEECC-CCcEEEE
Confidence 467888983 57777776666778888888753 3211111 000 0112355788888 5666666
Q ss_pred Ee
Q 001178 1082 GL 1083 (1131)
Q Consensus 1082 ~~ 1083 (1131)
..
T Consensus 329 ~~ 330 (354)
T 3a9g_A 329 TS 330 (354)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.30 E-value=0.086 Score=57.49 Aligned_cols=233 Identities=15% Similarity=0.106 Sum_probs=118.6
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC---CCE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---GNF 423 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd---g~~ 423 (1131)
-...+.++|.|||+ ++++ ..+|.|+++| .+++ .. +. ++ . +..........|+|+|+ +..
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~---~~--~~-------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KL---VA--SF-------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EE---EE--EC-------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eE---ee--cc-------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 35688999999997 5554 5569999997 3443 11 00 00 0 11122356889999998 444
Q ss_pred EEEEeC----C----CeEEEEEecCCC-cc---ceee-eee-cCcCCeeEEEEecCCCceEEEEEcC-------------
Q 001178 424 IGVAFT----K----HLIHLYTYQGSN-DL---CQSL-EID-AHVGGVNDLAFSYPNKQLCIVTCGD------------- 476 (1131)
Q Consensus 424 las~~~----d----~~i~vwd~~~~~-~~---~~~~-~~~-~h~~~V~~l~~s~d~~~~~l~s~s~------------- 476 (1131)
|.++.. + ..|..|+...+. .+ +... .+. +.......++|.|||. ++++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 444332 3 567788876541 11 1111 122 1112346799999997 5555432
Q ss_pred CCcEEEEeCCCc----------eeEEecCCccCeEEEeecccCCccEEEEEecCC---eEEEEeCCC--------C----
Q 001178 477 DKLIRVWDLSGR----------KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDN--------V---- 531 (1131)
Q Consensus 477 d~~i~iwd~~~~----------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~~wd~~~--------~---- 531 (1131)
.+.|.-.+..|+ .+. ..+|.. ...++|++. ++.++++-...+ .|.+..-.. .
T Consensus 168 ~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~ 244 (354)
T 3a9g_A 168 AGKILRVDEEGRPPADNPFPNSPIW-SYGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGR 244 (354)
T ss_dssp SSEEEEECTTSCCCTTSSSTTCCEE-EECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred CeEEEEEcCCCCCCCCCCCCCCcEE-EEccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCC
Confidence 134555554443 111 123333 456777652 334444332221 132221100 0
Q ss_pred ----ceeEEecCCCceEEEEEEc-------cCCCEEEEEeecCCCCceEEEEeCCCC-eee--EEEecccCCceEEEEEe
Q 001178 532 ----GSRVDYDAPGLWCTTMLYS-------ADGSRLFSCGTSKEGDSHLVEWNESEG-ALK--RTYIGFRKKSAGVVQFD 597 (1131)
Q Consensus 532 ----~~~~~~~~~~~~v~~~~~s-------~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~v~~~~~s 597 (1131)
.....+.........++|. .+|+++++... .+.|...++... +.. ..+.......+..+++.
T Consensus 245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~ 320 (354)
T 3a9g_A 245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVID 320 (354)
T ss_dssp TTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEEC
T ss_pred CCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccCCCCCeeEEEEC
Confidence 1112221223357788883 56665555432 567888777643 322 22322123357778888
Q ss_pred CCCCEEEEE
Q 001178 598 TTRNRILAA 606 (1131)
Q Consensus 598 ~~~~~l~~~ 606 (1131)
|||..+++.
T Consensus 321 pDG~lyv~~ 329 (354)
T 3a9g_A 321 DDGGILIST 329 (354)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 888655554
No 311
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.29 E-value=0.002 Score=77.63 Aligned_cols=210 Identities=10% Similarity=-0.019 Sum_probs=122.4
Q ss_pred CCEEEEEEcCCCCEEEEE-eCCCeEEEEEecCC---CccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeC
Q 001178 410 ISVSRVAWSPDGNFIGVA-FTKHLIHLYTYQGS---NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL 485 (1131)
Q Consensus 410 ~~V~~~~~spdg~~las~-~~d~~i~vwd~~~~---~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 485 (1131)
..+..++|++++..|..+ ...+.|..+++.+. ..... .+.........|++.+.+.. ++++-...+.|.+.+.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 482 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCCEECCCSSSB-CEECCTTTSCEEEEBS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEec
Confidence 346689999977766655 34578999998751 11111 11112234567888865554 4556566788999997
Q ss_pred CCceeEEecC-CccCeEEEeecccCCccEEEEEecC-CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 486 SGRKLFQFEG-HEAPVYSVCPHQKENIHFIFSTAVD-GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 486 ~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
.+..+..+.. .......+++.+.. +.++++-... +.|...+++.................|+++|++..|+.+-.
T Consensus 483 dg~~~~~l~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~-- 559 (699)
T 1n7d_A 483 KGVKRKTLFREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 559 (699)
T ss_dssp SSCCEEEECCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET--
T ss_pred CCCceEEEEeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec--
Confidence 7766555432 22445677775532 2333333222 67877777654333332233345678999998877777643
Q ss_pred CCCceEEEEeCCCCeeeEEEeccc--CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFR--KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
..+.|..+++... ..+.+.... ......+++..+ ..+++....+.|..++..+++.+..+..
T Consensus 560 -~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 560 -KLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp -TTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred -CCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 3678999998643 333332211 112233555433 3444555678899999888887766643
No 312
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.24 E-value=0.0074 Score=63.42 Aligned_cols=170 Identities=11% Similarity=0.133 Sum_probs=110.3
Q ss_pred EeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEE-eecc----cc--cCeeEEEE---ccCCCEEEEEe---
Q 001178 870 FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT-KLKG----HQ--KHITGLAF---STNLNILVSSG--- 936 (1131)
Q Consensus 870 ~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~-~~~~----h~--~~V~~l~~---s~dg~~l~s~~--- 936 (1131)
+........+++|.+.++.++++.-..++|..|+...+.... .+.+ .. ..+.+|.| .|+++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 344455567889988566666666689999999987554332 2332 11 13578999 68887777544
Q ss_pred ----------CCCcEEEEEcC---CCceeeeeeeecCC-------CCCCCCceEEEEcCCCcEEEEEe-C-CeEEEEeCC
Q 001178 937 ----------SDAQLIFWNTD---TWEKRKSIAIQLPA-------GKLPVGETRVQFHSDQVRLLVNH-E-TQLAIYDGS 994 (1131)
Q Consensus 937 ----------~Dg~v~lwd~~---~~~~~~~~~~~~~~-------~~~~~~v~~v~~s~d~~~l~~~~-d-~~i~vwd~~ 994 (1131)
.+..|..+|+. +++......+.... +........++..++|+..++++ . +.|...+..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 26789999999 66654433321110 10113477899999999887654 5 666666665
Q ss_pred CcccceeeecC---CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 001178 995 KMECIRQWVPQ---DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 995 ~~~~~~~~~~~---~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
.. .+..+... .......+.|++.|||+.|++...+|.+..+|+.+
T Consensus 168 G~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 168 GK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 43 33322211 11123467999999999999888899999999884
No 313
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.21 E-value=0.063 Score=58.58 Aligned_cols=108 Identities=16% Similarity=0.109 Sum_probs=62.3
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC---CCE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---GNF 423 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd---g~~ 423 (1131)
-...+.++|.|||+ ++++ ..+|.|.+++ +++... +.++. +..........|+|+|| +..
T Consensus 30 l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~-----~~~~~---------v~~~g~~~p~gia~~pdf~~~g~ 91 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLST-----YAELS---------VYHRGESGLLGLALHPRFPQEPY 91 (352)
T ss_dssp CSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEE-----EEECC---------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccE-----eecce---------EeecCCCCceeEEECCCCCCCCE
Confidence 34678999999997 5554 4569999998 443211 00000 11223456889999998 554
Q ss_pred EEEEeC-C-----CeEEEEEecCCCc--cceee-eee---cCcCCeeEEEEecCCCceEEEEE
Q 001178 424 IGVAFT-K-----HLIHLYTYQGSND--LCQSL-EID---AHVGGVNDLAFSYPNKQLCIVTC 474 (1131)
Q Consensus 424 las~~~-d-----~~i~vwd~~~~~~--~~~~~-~~~---~h~~~V~~l~~s~d~~~~~l~s~ 474 (1131)
|.++.. + +.|..|+...+.. .+... .+. +.......++|.|||. ++++.
T Consensus 92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 444432 2 5788888875421 11111 122 1112346899999997 55554
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.07 E-value=0.039 Score=59.06 Aligned_cols=235 Identities=11% Similarity=0.073 Sum_probs=121.5
Q ss_pred CEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC----CcEEEEEeecceeE--Eeeccc
Q 001178 846 SYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED----STIQIYNVRVDEVK--TKLKGH 916 (1131)
Q Consensus 846 ~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d----g~I~iwd~~~~~~~--~~~~~h 916 (1131)
.+++.|+ ...+.+||..+.+-...-..+.......+..- ++.+++.|+.+ ..+.+||..+.+-. ..+...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 3444554 25699999988654322111122222222223 67788888765 56888998876432 222222
Q ss_pred ccCeeEEEEccCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe------
Q 001178 917 QKHITGLAFSTNLNILVSSGSD------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH------ 984 (1131)
Q Consensus 917 ~~~V~~l~~s~dg~~l~s~~~D------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~------ 984 (1131)
...-.++. -+++.++.||.+ ..+.+||+.+.+-..... .+.. ..-..++. -++++++.|.
T Consensus 92 r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~---r~~~~~~~-~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 92 RDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS--MLTQ---RCSHGMVE-ANGLIYVCGGSLGNNV 163 (306)
T ss_dssp CBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC--CSSC---CBSCEEEE-ETTEEEEECCEESCTT
T ss_pred ccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC--CcCC---cceeEEEE-ECCEEEEECCCCCCCC
Confidence 22222222 267778888765 458899988865332211 1111 11122222 2555555542
Q ss_pred ----CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCceeeEecCCccccC
Q 001178 985 ----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPSAYMSQ 1055 (1131)
Q Consensus 985 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~ 1055 (1131)
-..+.+||+.+.+-...-.... ....-..+. -++++++.|+.+ ..+.+||..+.+-. .+.. .+.
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~-~~~~---~p~ 236 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWK-MVSP---MPW 236 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEEE-ECCC---CSC
T ss_pred cccccceEEEeCCCCCeEEECCCccc-hhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcEE-ECCC---CCC
Confidence 3458899998764332211111 011112222 277788887753 46889999876532 2221 111
Q ss_pred CCCCCCCccccEEEEEcCCCCCeEEEEecC-----CcEEEEecCCCccccccccCCC
Q 001178 1056 ASPNSSQTVFPLVVTSHPQEPNQLAVGLTD-----GSVKVIEPSETERKWGVAVPVD 1107 (1131)
Q Consensus 1056 ~~~~~~~~v~~~~v~~~p~~~~~l~s~~~D-----g~v~iW~~~~~~~~w~~~~p~~ 1107 (1131)
.. .....+.. ++.+++.||.+ ..+.+||+.+.+ |...++..
T Consensus 237 ~r------~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~ 282 (306)
T 3ii7_A 237 KG------VTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETDK--WVANSKVR 282 (306)
T ss_dssp CB------SCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTTE--EEEEEEEE
T ss_pred Cc------cceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCe--EEeCCCcc
Confidence 10 01111222 56788888865 457777776655 88765443
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.99 E-value=0.18 Score=54.88 Aligned_cols=242 Identities=11% Similarity=0.058 Sum_probs=125.0
Q ss_pred CeeEEEecCCCC-EEEEEeCCeEEEEECCCceeEEEEe-------CCCCCeeEEEEeCC---CCcEEEEEeC-------C
Q 001178 835 VVPCVALSKNDS-YVMSAGGGKVSLFNMMNFKVMTTFM-------SPPPASTFLAFHPQ---DNNIIAIGME-------D 896 (1131)
Q Consensus 835 ~i~~l~~s~dg~-~la~~~dg~i~vwd~~~~~~~~~~~-------~~~~~i~~l~~s~~---~~~~la~g~~-------d 896 (1131)
....|+|.|||+ ++++-..|.|++++.. +.....+. ........++++|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 457899999999 6666558999999854 33211111 12345689999994 3555554333 2
Q ss_pred CcEEEEEeecc-------eeE-Eeec-----ccccCeeEEEEccCCCEEEEEeCC-------------CcEEEEEcCCCc
Q 001178 897 STIQIYNVRVD-------EVK-TKLK-----GHQKHITGLAFSTNLNILVSSGSD-------------AQLIFWNTDTWE 950 (1131)
Q Consensus 897 g~I~iwd~~~~-------~~~-~~~~-----~h~~~V~~l~~s~dg~~l~s~~~D-------------g~v~lwd~~~~~ 950 (1131)
..|..|++..+ +.+ ..+. .|. -..|+|.|||.++++.+.. |.|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 111 1121 122 3579999999776665442 356666655310
Q ss_pred ee----------eeeeeecCCCCCCCCceEEEEcC-CCcEEEEEe--CCeEEEEeCCCcccc------------------
Q 001178 951 KR----------KSIAIQLPAGKLPVGETRVQFHS-DQVRLLVNH--ETQLAIYDGSKMECI------------------ 999 (1131)
Q Consensus 951 ~~----------~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~--d~~i~vwd~~~~~~~------------------ 999 (1131)
.. ...... .+. .....++|+| +|.+.++-. ++.=.|.-+..+...
T Consensus 176 p~~npf~~~~~~~~~i~a--~G~--rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS--YGI--RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE--ECC--SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCCCcCCCCCCccEEE--EcC--cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 00 000000 011 3467899999 565555422 222233222221110
Q ss_pred ------eeeecC---CCCCCCeEEEEEcc-------CCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCc
Q 001178 1000 ------RQWVPQ---DVLSSPISSAAYSC-------NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQT 1063 (1131)
Q Consensus 1000 ------~~~~~~---~~~~~~v~~i~~s~-------dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1131)
..+... ..+......++|.. +|+++++....+.|...+++.++......... ...
T Consensus 252 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~~ 322 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILT---------DRG 322 (353)
T ss_dssp CCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESG---------GGC
T ss_pred ccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEccc---------CCC
Confidence 000000 01124677888864 56777766677888888887654332221100 011
Q ss_pred cccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1064 VFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1064 v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
-.+..+++.| ++.++++.. +..=+||++.
T Consensus 323 ~rp~~v~~~p-dG~lyv~td-~~~g~I~ri~ 351 (353)
T 2g8s_A 323 QRIRDVRTGP-DGYLYVLTD-ESSGELLKVS 351 (353)
T ss_dssp CCEEEEEECT-TSCEEEEEC-STTEEEEEEE
T ss_pred CceeEEEECC-CCcEEEEEe-CCCCEEEEEe
Confidence 2456788888 566655433 2233566653
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.99 E-value=0.033 Score=59.46 Aligned_cols=235 Identities=14% Similarity=0.117 Sum_probs=121.4
Q ss_pred CCCEEEEEe-C------CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC-----CcEEEEEeecce---
Q 001178 844 NDSYVMSAG-G------GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED-----STIQIYNVRVDE--- 908 (1131)
Q Consensus 844 dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-----g~I~iwd~~~~~--- 908 (1131)
++.+++.|+ . ..+.+||..+.+-...-..+.......+... ++.+++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 445555554 1 3588999887653332111122222222223 67788888765 368899987654
Q ss_pred --eEEeecccccCeeEEEEccCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEE
Q 001178 909 --VKTKLKGHQKHITGLAFSTNLNILVSSGSDA-----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL 981 (1131)
Q Consensus 909 --~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 981 (1131)
.+..+......-.++.+ +++.++.||.++ .+.+||+.+.+-..... .+.. ..-..++. -++++++
T Consensus 93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~---r~~~~~~~-~~~~iyv 164 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD--MQTA---REGAGLVV-ASGVIYC 164 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE--CSSC---CBSCEEEE-ETTEEEE
T ss_pred eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCC--CCCC---cccceEEE-ECCEEEE
Confidence 23222222222222222 677777777543 58889988765433222 2211 11112222 2566655
Q ss_pred EEe------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCceeeEecCC
Q 001178 982 VNH------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 982 ~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~ 1050 (1131)
.|. ...+.+||+.+.+-...-.... ....-..+. -++++++.|+.+ ..+.+||..+.+-.. +..
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~~~- 239 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT-VTS- 239 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE-ECC-
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEE-CCC-
Confidence 542 2468899988765433211111 011122222 367888888764 468999998776432 221
Q ss_pred ccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCC-----cEEEEecCCCccccccccC
Q 001178 1051 AYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG-----SVKVIEPSETERKWGVAVP 1105 (1131)
Q Consensus 1051 ~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg-----~v~iW~~~~~~~~w~~~~p 1105 (1131)
.+... .....+.. ++.+++.||.++ .+.+||+.+.+ |...++
T Consensus 240 --~p~~r------~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~ 286 (301)
T 2vpj_A 240 --MTTPR------CYVGATVL---RGRLYAIAGYDGNSLLSSIECYDPIIDS--WEVVTS 286 (301)
T ss_dssp --CSSCC------BSCEEEEE---TTEEEEECCBCSSSBEEEEEEEETTTTE--EEEEEE
T ss_pred --CCCcc------cceeEEEE---CCEEEEEcCcCCCcccccEEEEcCCCCe--EEEcCC
Confidence 11110 01111222 557888888763 46677776654 887643
No 317
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.96 E-value=0.022 Score=61.54 Aligned_cols=151 Identities=10% Similarity=0.111 Sum_probs=104.6
Q ss_pred eEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCC----CCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeeccee---
Q 001178 837 PCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSP----PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV--- 909 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~--- 909 (1131)
+......+|..++++.++.||.-++......+.+... ...|..+..+| +|.+||..+ +..|.|-.+..+..
T Consensus 24 R~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 24 RYIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp EEEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCC
T ss_pred cEEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCc
Confidence 3445678899999999999999998865566666654 23689999999 899999775 45888888873210
Q ss_pred ---------EEeecc------cccCeeEEEEccC---CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC-----CCCCC
Q 001178 910 ---------KTKLKG------HQKHITGLAFSTN---LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA-----GKLPV 966 (1131)
Q Consensus 910 ---------~~~~~~------h~~~V~~l~~s~d---g~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~-----~~~~~ 966 (1131)
...+.- ...+|..+.|+|- +..|++-..|++|++||+........ .+.... .....
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ 180 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVN 180 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCC
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccc
Confidence 111211 2567999999995 56899999999999999997432222 111111 11126
Q ss_pred CceEEEEcCCCcEEEEE---eCCeEEE
Q 001178 967 GETRVQFHSDQVRLLVN---HETQLAI 990 (1131)
Q Consensus 967 ~v~~v~~s~d~~~l~~~---~d~~i~v 990 (1131)
.+.+++|.+++-.|.+. .+|.|+-
T Consensus 181 ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 181 DITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 78899999988766663 3466653
No 318
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.92 E-value=0.17 Score=54.49 Aligned_cols=202 Identities=10% Similarity=0.148 Sum_probs=120.5
Q ss_pred CCeeEEEecCCCCEEEEE-------------eCCeEEEEECCC--ceeE-EEEeC-----CCCCeeEEEEeCC-CC--cE
Q 001178 834 DVVPCVALSKNDSYVMSA-------------GGGKVSLFNMMN--FKVM-TTFMS-----PPPASTFLAFHPQ-DN--NI 889 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~-------------~dg~i~vwd~~~--~~~~-~~~~~-----~~~~i~~l~~s~~-~~--~~ 889 (1131)
.....+++.++|..++++ .+|.|.++|..+ .+.. ..+.+ .......+.+.++ ++ ++
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345678888998877776 378899999873 2221 12222 1246777887662 23 34
Q ss_pred EEEEeC--CCcEEEEEeecc----eeEEeeccc-ccCeeEEEEccCCCEEEEEeC-----------------CCcEEEEE
Q 001178 890 IAIGME--DSTIQIYNVRVD----EVKTKLKGH-QKHITGLAFSTNLNILVSSGS-----------------DAQLIFWN 945 (1131)
Q Consensus 890 la~g~~--dg~I~iwd~~~~----~~~~~~~~h-~~~V~~l~~s~dg~~l~s~~~-----------------Dg~v~lwd 945 (1131)
+++-.. +.+|.+|+++.+ ..+..+.+. -...+.+.+.++|.++++... .|.|..++
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444333 567889888753 223334332 234788999999998887651 23444444
Q ss_pred cCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCC-ccc--ceeeecCCCCCCCeEEEEEcc-
Q 001178 946 TDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSK-MEC--IRQWVPQDVLSSPISSAAYSC- 1019 (1131)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~-~~~--~~~~~~~~~~~~~v~~i~~s~- 1019 (1131)
. ++.. ...-.. .....++|+||++.|.+++ .+.|+.|++.. +.. .+.+ .. ......+++.+
T Consensus 210 ~--~~~~-~~~~~l------~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~---~g~PDGi~vD~e 276 (355)
T 3sre_A 210 P--NDVR-VVAEGF------DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF---DTLVDNISVDPV 276 (355)
T ss_dssp T--TCCE-EEEEEE------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC---SSEEEEEEECTT
T ss_pred C--CeEE-EeecCC------cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC---CCCCceEEEeCC
Confidence 3 3211 111111 3457899999999888864 67899999863 322 1222 11 45678899999
Q ss_pred CCCEEEEEecC-CcEEEEECC--CCceeeEec
Q 001178 1020 NSQLIYATFTD-GSIGVFDAD--SLRLRCRIA 1048 (1131)
Q Consensus 1020 dg~~l~s~~~d-g~i~vwd~~--~~~~~~~~~ 1048 (1131)
+|++.+++..+ +.|..|+.+ .+..+.++.
T Consensus 277 ~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 277 TGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp TCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 59988766544 344444433 244444444
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.81 E-value=0.11 Score=55.35 Aligned_cols=233 Identities=16% Similarity=0.147 Sum_probs=119.7
Q ss_pred CCEEEEEe-C----CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC-----cEEEEEeecceeE--Ee
Q 001178 845 DSYVMSAG-G----GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDEVK--TK 912 (1131)
Q Consensus 845 g~~la~~~-d----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-----~I~iwd~~~~~~~--~~ 912 (1131)
+.+++.|+ + ..+.+||+.+.+-...-..+.......+..- ++.+++.|+.++ .+.+||..+.+-. ..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 34455554 2 4588999887653332111122211112222 677888887653 5888888766432 22
Q ss_pred ecccccCeeEEEEccCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe---
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGSDA-----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--- 984 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--- 984 (1131)
+......-.++.+ +++.++.||.++ .+.+||+.+.+-...... +.. .....++. -++++++.|.
T Consensus 95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~---r~~~~~~~-~~~~iyv~GG~~~ 166 (302)
T 2xn4_A 95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM--NTR---RSSVGVGV-VGGLLYAVGGYDV 166 (302)
T ss_dssp CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC--SSC---CBSCEEEE-ETTEEEEECCEET
T ss_pred CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC--CCc---ccCceEEE-ECCEEEEEeCCCC
Confidence 2221122222222 677778887653 577888887553322211 111 11122222 2555555532
Q ss_pred -----CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCceeeEecCCcccc
Q 001178 985 -----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPSAYMS 1054 (1131)
Q Consensus 985 -----d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~ 1054 (1131)
-..+.+||+.+.+-...-..... ...-..+ .-++++++.|+.+ ..+.+||..+.+-. .+... +
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~---~ 239 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMSTR-RSGAGVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR-QVADM---N 239 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSSC-CBSCEEE--EETTEEEEECCBSSSSBCCCEEEEETTTTEEE-EECCC---S
T ss_pred CCCccccEEEEEeCCCCcEEECCCCccc-cccccEE--EECCEEEEECCCCCCcccceEEEEeCCCCCEe-eCCCC---C
Confidence 24588999887643322111110 1112222 2377888888754 46899999876533 22211 1
Q ss_pred CCCCCCCCccccEEEEEcCCCCCeEEEEecCC-----cEEEEecCCCcccccccc
Q 001178 1055 QASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG-----SVKVIEPSETERKWGVAV 1104 (1131)
Q Consensus 1055 ~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg-----~v~iW~~~~~~~~w~~~~ 1104 (1131)
... .....+.. ++.+++.||.++ .+.+||+.+.+ |...+
T Consensus 240 ~~r------~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~ 283 (302)
T 2xn4_A 240 MCR------RNAGVCAV---NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTVVS 283 (302)
T ss_dssp SCC------BSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE--EEECS
T ss_pred Ccc------ccCeEEEE---CCEEEEECCcCCCcccccEEEEcCCCCe--EEECC
Confidence 110 01111222 567888888764 47888887765 98764
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.79 E-value=0.63 Score=49.85 Aligned_cols=202 Identities=11% Similarity=0.069 Sum_probs=107.8
Q ss_pred CCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEE--EEe----CCCCCeeEEEEeCC---CCcEEEEEe--CCCcEE
Q 001178 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMT--TFM----SPPPASTFLAFHPQ---DNNIIAIGM--EDSTIQ 900 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~--~~~----~~~~~i~~l~~s~~---~~~~la~g~--~dg~I~ 900 (1131)
-...+.|+|.|||+++++-. .|.|++++..+++... .+. ........|+++|+ ++.+.++-+ .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34568999999999888887 7999999876655422 221 22456789999993 355544322 344555
Q ss_pred EEEeecc----------eeE-Eeecc-cccCeeEEEEccCCCEEEEEeC-------------CCcEEEEEcCCCceee--
Q 001178 901 IYNVRVD----------EVK-TKLKG-HQKHITGLAFSTNLNILVSSGS-------------DAQLIFWNTDTWEKRK-- 953 (1131)
Q Consensus 901 iwd~~~~----------~~~-~~~~~-h~~~V~~l~~s~dg~~l~s~~~-------------Dg~v~lwd~~~~~~~~-- 953 (1131)
-|.+..+ +.+ ..+.. ....-..|+|.|||.++++.+. -|.|.-.+.+..-...
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 5655441 111 12221 1112467999999998888653 2444444443310000
Q ss_pred --eeeeecCCCCCCCCceEEEEcCCCcEEEEE--eCCeEEEEeCCCcccc------------------eeeecCCCCCCC
Q 001178 954 --SIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDGSKMECI------------------RQWVPQDVLSSP 1011 (1131)
Q Consensus 954 --~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~--~d~~i~vwd~~~~~~~------------------~~~~~~~~~~~~ 1011 (1131)
...+. ..++ .....++|+|+|.+.++- .++.=.|.-+..+... ..+..+ ...
T Consensus 191 f~~~~i~-a~G~--RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~---~~a 264 (347)
T 3das_A 191 FPGSPVY-SYGH--RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD---EAS 264 (347)
T ss_dssp STTCCEE-EBCC--SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT---TCC
T ss_pred CCCCeEE-eeCC--CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC---CCC
Confidence 00000 0111 345689999998876663 2332333333322211 111111 135
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 001178 1012 ISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1131)
Q Consensus 1012 v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~ 1041 (1131)
...++|. +|.+++..-..+.|....++..
T Consensus 265 p~G~~~~-~g~~~~~~l~~~~l~~v~~~~~ 293 (347)
T 3das_A 265 PSGIAYA-EGSVWMAGLRGERLWRIPLKGT 293 (347)
T ss_dssp EEEEEEE-TTEEEEEESTTCSEEEEEEETT
T ss_pred CcceEEE-cCceeeccccCCEEEEEEecCC
Confidence 6677776 4555555555556666665543
No 321
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.71 E-value=0.51 Score=51.31 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=59.3
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC---CCEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---GNFI 424 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd---g~~l 424 (1131)
...+.|+|.|||+++++ +...|.|++++.. ++... .+ -++ . .+..........|+|+|| +.+|
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~--~~--~~~-------~-~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSA--PL--SGV-------P-DVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECC--CC--BSC-------C-CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-Cceee--Ee--cCC-------c-ccccCCCCCceeEEECCCCCCCCEE
Confidence 45789999999974444 4567999999854 32211 00 000 0 011223456789999996 4444
Q ss_pred EEE-eC-------CCeEEEEEecCCC-ccceeee----ee---cCcCCeeEEEEecCCCceEEEEEc
Q 001178 425 GVA-FT-------KHLIHLYTYQGSN-DLCQSLE----ID---AHVGGVNDLAFSYPNKQLCIVTCG 475 (1131)
Q Consensus 425 as~-~~-------d~~i~vwd~~~~~-~~~~~~~----~~---~h~~~V~~l~~s~d~~~~~l~s~s 475 (1131)
..+ +. ...|..|++..+. .+..... +. .....-..++|.|||. ++++.+
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~G 148 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY--LFIALG 148 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE--EEEEEC
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc--EEEEEC
Confidence 333 22 2356667765431 1111111 11 1111246799999996 444443
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.69 E-value=0.2 Score=53.64 Aligned_cols=229 Identities=14% Similarity=0.104 Sum_probs=117.0
Q ss_pred eCCeEEEEECCCceeEE-EEeCCCCCeeEEEEeCCCCcEEEEEeC-----C------CcEEEEEeecceeEE--eecccc
Q 001178 852 GGGKVSLFNMMNFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGME-----D------STIQIYNVRVDEVKT--KLKGHQ 917 (1131)
Q Consensus 852 ~dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~la~g~~-----d------g~I~iwd~~~~~~~~--~~~~h~ 917 (1131)
+...+.+||..+++-.. .+..+..+....+... ++.+++.|+. . ..+.+||..+.+-.. .+....
T Consensus 11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 89 (315)
T 4asc_A 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89 (315)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred cCCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence 34679999998876433 2222223444444445 7788888874 1 127778887664322 122111
Q ss_pred cCeeEEEEccCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeC----
Q 001178 918 KHITGLAFSTNLNILVSSGSD--------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHE---- 985 (1131)
Q Consensus 918 ~~V~~l~~s~dg~~l~s~~~D--------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d---- 985 (1131)
..-..+.+ +++.++.||.+ ..+.+||+.+.+-..... .+.. ..-.+++. -++++++.|..
T Consensus 90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~---r~~~~~~~-~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP--LPYV---VYGHTVLS-HMDLVYVIGGKGSDR 161 (315)
T ss_dssp ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--CSSC---CBSCEEEE-ETTEEEEECCBCTTS
T ss_pred hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--CCCc---ccceeEEE-ECCEEEEEeCCCCCC
Confidence 11122222 56777777742 358899998755322221 1111 11122222 45555555431
Q ss_pred ---CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC-----cEEEEECCCCceeeEecCCccccCCC
Q 001178 986 ---TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG-----SIGVFDADSLRLRCRIAPSAYMSQAS 1057 (1131)
Q Consensus 986 ---~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~ 1057 (1131)
..+.+||..+.+-...-.... ....-.++ .-++++++.|+.++ .+.+||..+.+-.. +.. .+...
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~---~p~~r 234 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQT-ARSLFGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP-FEA---FPQER 234 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSS-CCBSCEEE--EETTEEEEEEEECSSSEEEEEEEEETTTTEEEE-ECC---CSSCC
T ss_pred cccceEEEEeCCCCeEEECCCCCC-chhceEEE--EECCEEEEEeccCCCCccceEEEEECCCCeEEE-CCC---CCCcc
Confidence 468999988754322211110 01112222 23778888888654 58889988775332 221 11110
Q ss_pred CCCCCccccEEEEEcCCCCCeEEEEecCC--------------cEEEEecCCCccccccccCCC
Q 001178 1058 PNSSQTVFPLVVTSHPQEPNQLAVGLTDG--------------SVKVIEPSETERKWGVAVPVD 1107 (1131)
Q Consensus 1058 ~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg--------------~v~iW~~~~~~~~w~~~~p~~ 1107 (1131)
..+ ..+.. ++.+++.||.++ .+.+||+.+. +|....|..
T Consensus 235 ~~~------~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~ 287 (315)
T 4asc_A 235 SSL------SLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK--KWEGVLREI 287 (315)
T ss_dssp BSC------EEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT--EEEEEESCS
T ss_pred cce------eEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCC--hhhhhccCC
Confidence 011 11222 557888888743 2556666655 498774443
No 323
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.62 E-value=0.089 Score=56.00 Aligned_cols=188 Identities=11% Similarity=0.033 Sum_probs=98.2
Q ss_pred CCCCEEEEEe-C-----CeEEEEECCCce---eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC-----cEEEEEeecce
Q 001178 843 KNDSYVMSAG-G-----GKVSLFNMMNFK---VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDE 908 (1131)
Q Consensus 843 ~dg~~la~~~-d-----g~i~vwd~~~~~---~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-----~I~iwd~~~~~ 908 (1131)
.++++++.|+ + ..+.+||..+.+ -...-..+.......+..- ++++++.|+.++ .+.+||..+.+
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 3566666665 3 358999988765 2222111122222222222 677888887543 58888887654
Q ss_pred e--EEeecccccCeeEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEE
Q 001178 909 V--KTKLKGHQKHITGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL 981 (1131)
Q Consensus 909 ~--~~~~~~h~~~V~~l~~s~dg~~l~s~~~D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 981 (1131)
- +..+......-.++. .+++.++.||.+ ..+.+||+.+.+-..... .+.. .....++. -++++++
T Consensus 140 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~---r~~~~~~~-~~~~i~v 211 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP--MATK---RSGAGVAL-LNDHIYV 211 (301)
T ss_dssp EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC--CSSC---CBSCEEEE-ETTEEEE
T ss_pred EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC--CCcc---cccceEEE-ECCEEEE
Confidence 2 222222111122222 267778887765 358899988765432211 1111 11122222 2555555
Q ss_pred EEe------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCc
Q 001178 982 VNH------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLR 1042 (1131)
Q Consensus 982 ~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~ 1042 (1131)
.|. ...+.+||+.+.+-...-..... ......+ .-++++++.|+.+ ..+.+||.++.+
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP-RCYVGAT--VLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEE--EETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCc-ccceeEE--EECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 543 24689999987654332111110 1122222 2377888888765 457888887765
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.61 E-value=0.13 Score=54.91 Aligned_cols=238 Identities=15% Similarity=0.129 Sum_probs=121.7
Q ss_pred cCCCCEEEEEe-C----CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeC----C-----CcEEEEEeecc
Q 001178 842 SKNDSYVMSAG-G----GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME----D-----STIQIYNVRVD 907 (1131)
Q Consensus 842 s~dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~----d-----g~I~iwd~~~~ 907 (1131)
.-++.+++.|+ + ..+.+||..+.+-...-..+.......+..- ++.+++.|+. + ..+.+||..+.
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 34566666665 2 4589999887654332111112211112222 6677877776 2 46888888766
Q ss_pred eeEE--eecccccCeeEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEE
Q 001178 908 EVKT--KLKGHQKHITGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1131)
Q Consensus 908 ~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 980 (1131)
+-.. .+......-.++.+ +++.++.||.+ ..+.+||+.+.+-...... +.. ..-..++.. +++++
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~---r~~~~~~~~-~~~iy 172 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM--LTR---RIGVGVAVL-NRLLY 172 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC--SSC---CBSCEEEEE-TTEEE
T ss_pred eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC--Ccc---ccceEEEEE-CCEEE
Confidence 4322 22211122222222 67777777654 3588899887553322211 111 111122222 55555
Q ss_pred EEEe------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCceeeEecC
Q 001178 981 LVNH------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 981 ~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~ 1049 (1131)
+.|. ...+.+||+.+.+-...-.... ....-..+.+ ++++++.|+.+ ..+.+||+.+.+-. .+..
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~ 248 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT-FVAP 248 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE-ECCC
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE-ECCC
Confidence 5542 2468899988754332211111 0112222222 77888888754 56999999876533 2221
Q ss_pred CccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCC-----cEEEEecCCCccccccccCC
Q 001178 1050 SAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG-----SVKVIEPSETERKWGVAVPV 1106 (1131)
Q Consensus 1050 ~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg-----~v~iW~~~~~~~~w~~~~p~ 1106 (1131)
.+... .-.. .+.. ++.+++.||.++ .+.+||+.+.+ |...++.
T Consensus 249 ---~p~~r-----~~~~-~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~ 296 (308)
T 1zgk_A 249 ---MKHRR-----SALG-ITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSEVTRM 296 (308)
T ss_dssp ---CSSCC-----BSCE-EEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEEC
T ss_pred ---CCCCc-----cceE-EEEE---CCEEEEEcCcCCCcccceEEEEcCCCCE--EeecCCC
Confidence 11110 0011 1221 567888888653 46777776654 9876544
No 325
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.56 E-value=0.93 Score=51.03 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=63.6
Q ss_pred CCeeEEEecCCCCEEEEEeC-CeEEEEECCCceeE--EEEeC------CCCCeeEEEEeCC---CCcEEEEEeC------
Q 001178 834 DVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVM--TTFMS------PPPASTFLAFHPQ---DNNIIAIGME------ 895 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~d-g~i~vwd~~~~~~~--~~~~~------~~~~i~~l~~s~~---~~~~la~g~~------ 895 (1131)
...+.|+|.|||+++++-.. +.|++++..++... ..+.. .......|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999998887765 47988887655432 22221 2345679999994 4555444432
Q ss_pred ------CCcEEEEEeecc-------eeEE-eecc-cccCeeEEEEccCCCEEEEEeC
Q 001178 896 ------DSTIQIYNVRVD-------EVKT-KLKG-HQKHITGLAFSTNLNILVSSGS 937 (1131)
Q Consensus 896 ------dg~I~iwd~~~~-------~~~~-~~~~-h~~~V~~l~~s~dg~~l~s~~~ 937 (1131)
...|.-|+...+ +.+. .+.. .......|+|.|||.++++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555655432 1121 1221 1123688999999998887654
No 326
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.43 E-value=0.24 Score=54.18 Aligned_cols=239 Identities=15% Similarity=0.118 Sum_probs=116.0
Q ss_pred CCCEEEEEe--CCeEEEEECCC--c--eeEEEEeCCCCCe-eEEEEeCCCCcEEEEEeC-C---------CcEEEEEeec
Q 001178 844 NDSYVMSAG--GGKVSLFNMMN--F--KVMTTFMSPPPAS-TFLAFHPQDNNIIAIGME-D---------STIQIYNVRV 906 (1131)
Q Consensus 844 dg~~la~~~--dg~i~vwd~~~--~--~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~-d---------g~I~iwd~~~ 906 (1131)
++++++.|+ ...+.+||..+ . ..+..+.. ..+. .+++. - ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~-~~R~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPG-GPRDQATSAF-I-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTT-CCCBSCEEEE-E-TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCC-CcCccceEEE-E-CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 677777776 46799999864 2 22222221 1221 22222 2 6778887776 2 4688899877
Q ss_pred ceeEE--eecccccCeeEEEEccCCCEEEEEeCC---------------------------------------CcEEEEE
Q 001178 907 DEVKT--KLKGHQKHITGLAFSTNLNILVSSGSD---------------------------------------AQLIFWN 945 (1131)
Q Consensus 907 ~~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D---------------------------------------g~v~lwd 945 (1131)
.+-.. .+. ........+...++++++.||.+ ..+.+||
T Consensus 96 ~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 96 NSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 64322 222 01111121222577888888865 4688999
Q ss_pred cCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-------CCeEEEEeC--CCccc--ceeeecCCCCCCCeEE
Q 001178 946 TDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-------ETQLAIYDG--SKMEC--IRQWVPQDVLSSPISS 1014 (1131)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-------d~~i~vwd~--~~~~~--~~~~~~~~~~~~~v~~ 1014 (1131)
+.+.+-..... .+... .....++.. ++++++.|. ...+.+||+ .+.+- +..+... ......
T Consensus 175 ~~~~~W~~~~~--~p~~~--~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~---~~~~~~ 246 (357)
T 2uvk_A 175 PSTQQWSYAGE--SPWYG--TAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSP---DGVAGG 246 (357)
T ss_dssp TTTTEEEEEEE--CSSCC--CBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTT---TCCBSC
T ss_pred CCCCcEEECCC--CCCCC--cccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCC---cccccc
Confidence 88765433222 22111 111223332 455555532 245777876 33322 1111111 111112
Q ss_pred EEEccCCCEEEEEecC----------------------CcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEc
Q 001178 1015 AAYSCNSQLIYATFTD----------------------GSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSH 1072 (1131)
Q Consensus 1015 i~~s~dg~~l~s~~~d----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~ 1072 (1131)
.+...++++++.|+.+ ..+.+||+.+.+-.. +.. .+... ....++..
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~---~p~~r------~~~~~~~~- 315 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDK-SGE---LSQGR------AYGVSLPW- 315 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEE-EEE---CSSCC------BSSEEEEE-
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceee-CCC---CCCCc------ccceeEEe-
Confidence 2233477888888732 257889988765332 211 11110 01112222
Q ss_pred CCCCCeEEEEecCCc----EEEEecCCCccccccccCCC
Q 001178 1073 PQEPNQLAVGLTDGS----VKVIEPSETERKWGVAVPVD 1107 (1131)
Q Consensus 1073 p~~~~~l~s~~~Dg~----v~iW~~~~~~~~w~~~~p~~ 1107 (1131)
++.+++.||.++. =-+|-+.-...+|....|..
T Consensus 316 --~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 316 --NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp --TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred --CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 5678999997642 24665666667799887765
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.42 E-value=0.2 Score=53.45 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=100.4
Q ss_pred CCCCEEEEEe-C----CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC------CcEEEEEeecceeEE
Q 001178 843 KNDSYVMSAG-G----GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED------STIQIYNVRVDEVKT 911 (1131)
Q Consensus 843 ~dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d------g~I~iwd~~~~~~~~ 911 (1131)
-++++++.|+ + ..+.+||..+.+-...-..+.......+..- ++++++.|+.+ ..+.+||..+.+-..
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 3666666665 3 5689999988654333222222222222223 67788888765 458899988764322
Q ss_pred --eecccccCeeEEEEccCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEE
Q 001178 912 --KLKGHQKHITGLAFSTNLNILVSSGS---------DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1131)
Q Consensus 912 --~~~~h~~~V~~l~~s~dg~~l~s~~~---------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 980 (1131)
.+......-.++. -++++++.|+. -..+.+||+.+.+-..... .+.. ..-..++.. +++++
T Consensus 133 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~---r~~~~~~~~-~~~i~ 204 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP--MIEA---RKNHGLVFV-KDKIF 204 (306)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC--CSSC---CBSCEEEEE-TTEEE
T ss_pred CCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC--ccch---hhcceEEEE-CCEEE
Confidence 2221111112222 36677777764 2448899998865332221 1111 111222222 55555
Q ss_pred EEEe------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCce
Q 001178 981 LVNH------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRL 1043 (1131)
Q Consensus 981 ~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~ 1043 (1131)
+.|. -..+.+||+.+.+-...-.... ......++.+ ++++++.|+.+ ..+.+||..+.+-
T Consensus 205 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 205 AVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW-KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp EECCEETTEEBCCEEEEETTTTEEEECCCCSC-CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred EEeCCCCCCCCceEEEeeCCCCcEEECCCCCC-CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 5542 2468999998754322211110 0122223333 78888888854 5688999887653
No 328
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.30 E-value=0.33 Score=60.74 Aligned_cols=260 Identities=8% Similarity=0.085 Sum_probs=145.9
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~ 645 (1131)
..+|.|.|+.++..+..... ...+.-++|..+.++.- ...++.|||+.+...+....... +|.--.|-.+.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi----~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e---~VvfWkWis~~- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 117 (1630)
T ss_pred CceEEEEECCCCCCcccccc----cchhhccCCCcceEEEe-cCCeEEEeehHHhhhhcccccCC---CceEEEecCCC-
Confidence 44788888887654422111 22234578877755554 47899999999988887766544 45555665443
Q ss_pred EEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccc
Q 001178 646 LLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAA 725 (1131)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~ 725 (1131)
.|+..+ +..|.-|++.......+.+..|..-
T Consensus 118 ~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L------------------------------------------------ 148 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (1630)
T ss_pred eeEEEc-CCeEEEeccCCCCccHHHHhcchhc------------------------------------------------
Confidence 344333 4588999986543444444332211
Q ss_pred cCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeee-------cceeeEEeecC
Q 001178 726 RGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS-------NGVQKLWKWNR 798 (1131)
Q Consensus 726 ~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~iw~~~~ 798 (1131)
...+|.....+++.++++..|- .|.+.+|..+.
T Consensus 149 ----------------------------------------~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 149 ----------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred ----------------------------------------ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 1234445555666666665442 35666666554
Q ss_pred CCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEec---CCCCEEEEEe----CCeEEEEECCCc---eeE-
Q 001178 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS---KNDSYVMSAG----GGKVSLFNMMNF---KVM- 867 (1131)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s---~dg~~la~~~----dg~i~vwd~~~~---~~~- 867 (1131)
....+-. +|......+.+. +....++.+. +++++|.++... ...
T Consensus 189 ~~sQ~ie-------------------------gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f 243 (1630)
T 1xi4_A 189 KVSQPIE-------------------------GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (1630)
T ss_pred ccchhhh-------------------------HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC
Confidence 3221110 111111111110 1112222222 367888887542 110
Q ss_pred -----EEEeC---CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCC
Q 001178 868 -----TTFMS---PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA 939 (1131)
Q Consensus 868 -----~~~~~---~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg 939 (1131)
..+.. ...-..++..|+ .-.++..-+.-|.|++||+.++.++..-+-...+|...+.+....-++.....|
T Consensus 244 ~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G 322 (1630)
T 1xi4_A 244 PKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 322 (1630)
T ss_pred ccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCc
Confidence 01111 123356777887 566777889999999999999998877665556666665555444455556777
Q ss_pred cEEEEEcCCC
Q 001178 940 QLIFWNTDTW 949 (1131)
Q Consensus 940 ~v~lwd~~~~ 949 (1131)
.|.--.++..
T Consensus 323 ~vl~v~v~~~ 332 (1630)
T 1xi4_A 323 QVLSVCVEEE 332 (1630)
T ss_pred eEEEEEEccc
Confidence 7766666553
No 329
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.29 E-value=1.6 Score=46.79 Aligned_cols=114 Identities=17% Similarity=0.112 Sum_probs=66.0
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC----C
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD----G 421 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd----g 421 (1131)
.-...+.++|.|||+ ++++--..|.|++++..+++.... . .+ ..+..........|+|+|| +
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v---~--~~--------~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTEL---G--EV--------PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE---E--EC--------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeee---c--cc--------CceeecCCCCceeeEeccccccCC
Confidence 455789999999997 666655589999998765543210 0 00 0022334567899999995 4
Q ss_pred CEEEEEe--CCCeEEEEEecCCC----cc---ceee-eee-cCcCCeeEEEEecCCCceEEEEEc
Q 001178 422 NFIGVAF--TKHLIHLYTYQGSN----DL---CQSL-EID-AHVGGVNDLAFSYPNKQLCIVTCG 475 (1131)
Q Consensus 422 ~~las~~--~d~~i~vwd~~~~~----~~---~~~~-~~~-~h~~~V~~l~~s~d~~~~~l~s~s 475 (1131)
.+.++-+ .++.|.-|.+..+. .+ +.+. .+. +....-..|+|.|||. ++++.+
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 4444322 34566667665521 11 1111 121 1122356799999997 555543
No 330
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.22 E-value=0.44 Score=50.51 Aligned_cols=230 Identities=10% Similarity=0.032 Sum_probs=110.7
Q ss_pred CCEEEEEeCC----CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC-----CcEEEEeCCCceeE
Q 001178 421 GNFIGVAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-----KLIRVWDLSGRKLF 491 (1131)
Q Consensus 421 g~~las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d-----~~i~iwd~~~~~~~ 491 (1131)
+..++.|+.+ ..+..||..+.+- .....+......- +++. -+++ +++.|+.+ ..+.+||.....-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCRA-GMVY-MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBSC-EEEE-ETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCcccccc-eEEE-ECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 3455555543 3578888877542 1111111111111 1222 2555 66666644 35788883333322
Q ss_pred EecC---CccCeEEEeecccCCccEEEEEecCC-----eEEEEeCCCCceeEEecC--CCceEEEEEEccCCCEEEEEee
Q 001178 492 QFEG---HEAPVYSVCPHQKENIHFIFSTAVDG-----KIKAWLYDNVGSRVDYDA--PGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 492 ~~~~---h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
.+.. .......+.+ ++.+++.|+.++ .+.+||..+..-...-.. .......+. -+++.++.++.
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~ 164 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGY 164 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCE
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCC
Confidence 2221 1111222222 346677776553 467778766543222111 111111222 25666677665
Q ss_pred cCCC---CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC-----CcEEEEEcCCCeEEEEEeccCCCC
Q 001178 562 SKEG---DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED-----NQIKFWDMDNVNMLTSTEAEGGLP 633 (1131)
Q Consensus 562 ~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 633 (1131)
+... ...+.+||..+.+....-.......-.+++.. ++..++.|+.+ ..+.+||..+.+....-.....
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 3321 34688999988765443211111111222222 55666677654 4689999988765443322211
Q ss_pred CcceEEEcCCCCEEEEEECCC-----cEEEEecCCC
Q 001178 634 SLPRLRFNKEGNLLVVTTADQ-----GIKILANADG 664 (1131)
Q Consensus 634 ~i~~v~~sp~~~~l~~~~~dg-----~i~iw~~~~~ 664 (1131)
.....+..-++.+++.|+.++ .+.+||..+.
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 112222223567777777553 4778887654
No 331
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.09 E-value=0.077 Score=57.39 Aligned_cols=126 Identities=18% Similarity=0.172 Sum_probs=81.0
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCccccc-----c--cceeecccccccceeceeccCCCCCEEEEEEcCC-
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVS-----K--PFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD- 420 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd- 420 (1131)
.|..+..||+|+. ||.-+ +.+|.|-.+..+..... . ..+.|.+.. .......+|..+.|+|-
T Consensus 67 ~i~qlvlSpsG~l-LAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl~ 136 (452)
T 3pbp_A 67 DTFHVISSTSGDL-LCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPKS 136 (452)
T ss_dssp TTCEEEECTTSSE-EEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTTB
T ss_pred ceeEEEECCCCCE-EEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEecccc
Confidence 6888999999984 66554 56899999874432221 1 112222211 01124678999999994
Q ss_pred --CCEEEEEeCCCeEEEEEecCCCccce-------eeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 421 --GNFIGVAFTKHLIHLYTYQGSNDLCQ-------SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 421 --g~~las~~~d~~i~vwd~~~~~~~~~-------~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+..|++-..|++|++||+........ .+.+..+...|.+++|..++-.+++++....|.|+-..
T Consensus 137 ~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 137 YRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp GGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred CCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 56899999999999999986332111 01122233578899999987766666666777765544
No 332
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.00 E-value=2.2 Score=45.85 Aligned_cols=197 Identities=13% Similarity=0.078 Sum_probs=109.2
Q ss_pred EEEEEEcCCCCEEEEE------------eCCCeEEEEEecCCCccceeeeeec-----CcCCeeEEEEec--CCCceEEE
Q 001178 412 VSRVAWSPDGNFIGVA------------FTKHLIHLYTYQGSNDLCQSLEIDA-----HVGGVNDLAFSY--PNKQLCIV 472 (1131)
Q Consensus 412 V~~~~~spdg~~las~------------~~d~~i~vwd~~~~~~~~~~~~~~~-----h~~~V~~l~~s~--d~~~~~l~ 472 (1131)
.-.++..|+|..++++ ..+|.|.++|.++.........+.+ .......+.+.+ ++...+++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3456678887666555 2689999999974321111223333 234567788766 45432344
Q ss_pred EEcC--CCcEEEEe--CCCcee---EEecCC-ccCeEEEeecccCCccEEEEEe-----------------cCCeEEEEe
Q 001178 473 TCGD--DKLIRVWD--LSGRKL---FQFEGH-EAPVYSVCPHQKENIHFIFSTA-----------------VDGKIKAWL 527 (1131)
Q Consensus 473 s~s~--d~~i~iwd--~~~~~~---~~~~~h-~~~v~~~~~~~~~~~~~l~s~s-----------------~dg~i~~wd 527 (1131)
+-.. +.+|.+|+ ..+... ..+.+. -...+.+++.+ +|.+.++.. ..|.|.-++
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 4333 56888888 333332 233332 23467777753 455555543 124455454
Q ss_pred CCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC-Cee--eEEEecccCCceEEEEEeC-CCCEE
Q 001178 528 YDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GAL--KRTYIGFRKKSAGVVQFDT-TRNRI 603 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~v~~~~~s~-~~~~l 603 (1131)
. .+.. .+...-...+.++|+||++.|+.+.. ..+.|+.|++.. +.. .+.+. .......+++.+ +|++.
T Consensus 210 ~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 210 P--NDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDLW 281 (355)
T ss_dssp T--TCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCEE
T ss_pred C--CeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcEE
Confidence 4 2222 22222234689999999999888764 267899999753 432 22332 233566788998 58877
Q ss_pred EEEEcC-CcEEEEEcC
Q 001178 604 LAAGED-NQIKFWDMD 618 (1131)
Q Consensus 604 ~~~~~d-g~i~iwd~~ 618 (1131)
+++..+ +.|..|+..
T Consensus 282 va~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 282 VGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEESCHHHHHSCCTT
T ss_pred EEecCCceEEEEECCC
Confidence 766533 344444433
No 333
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.87 E-value=0.057 Score=52.60 Aligned_cols=147 Identities=16% Similarity=0.078 Sum_probs=84.5
Q ss_pred CeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccC--------eeEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001178 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKH--------ITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 876 ~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~--------V~~l~~s~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
.++.++|+| ++.+.++ .+|.++-.+..+... ..+.+-... -.++.|.++|.+.++ .||.|+-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~-~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDN-DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTT-CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCc-ccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 677999999 8888877 677665555433211 111111112 478999999998888 56988877753
Q ss_pred CCceeeee--eeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccc-----eeeecCCCCCCCeEEEEEccC
Q 001178 948 TWEKRKSI--AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECI-----RQWVPQDVLSSPISSAAYSCN 1020 (1131)
Q Consensus 948 ~~~~~~~~--~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~-----~~~~~~~~~~~~v~~i~~s~d 1020 (1131)
+.....-. ...+-.+ --..+..|.|.|+|.+.++. ++.++-....++... ....... .-....-+.|+++
T Consensus 116 ~~~~~~Wl~~a~~vg~~-gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~-g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSG-GWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQG-GWDTFKFLFFSSV 192 (236)
T ss_dssp CSTTCCHHHHSEEEECS-SGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESS-SGGGEEEEEECTT
T ss_pred cCCCCceeccccEeccC-CCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccC-CcceEEEEEECCC
Confidence 32111100 0000000 01367899999999999998 888655444432211 1111111 0223445668888
Q ss_pred CCEEEEEecCCcE
Q 001178 1021 SQLIYATFTDGSI 1033 (1131)
Q Consensus 1021 g~~l~s~~~dg~i 1033 (1131)
|.+.++. ++.+
T Consensus 193 G~l~~v~--~g~~ 203 (236)
T 1tl2_A 193 GTLFGVQ--GGKF 203 (236)
T ss_dssp SCEEEEE--TTEE
T ss_pred CcEEEEe--CCeE
Confidence 8877765 6643
No 334
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.80 E-value=3.3 Score=46.37 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=70.1
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCCcee-------------EEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCc
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKV-------------MTTFMSPPPASTFLAFHPQDNNIIAIGMEDST 898 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~-------------~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~ 898 (1131)
.....+.++|||+++++++ +.++.++|+..... ..... -.-.....+|.+ +|....+-.-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecce
Confidence 3445688999999999998 78899999874211 22222 244578899999 7766666778999
Q ss_pred EEEEEeecc----------eeEEeecccccCeeEEEE------ccCCCEEEEEeC
Q 001178 899 IQIYNVRVD----------EVKTKLKGHQKHITGLAF------STNLNILVSSGS 937 (1131)
Q Consensus 899 I~iwd~~~~----------~~~~~~~~h~~~V~~l~~------s~dg~~l~s~~~ 937 (1131)
|.-|++... ..+..+.-|-.+ -.+.- .+||++|++...
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEES
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecc
Confidence 999999764 455555555332 22222 578999998753
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.79 E-value=0.57 Score=51.08 Aligned_cols=60 Identities=5% Similarity=-0.113 Sum_probs=30.8
Q ss_pred eEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC------cEEEEECCCCceeeEecC
Q 001178 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG------SIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 987 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg------~i~vwd~~~~~~~~~~~~ 1049 (1131)
.+.+||+.+.+-...-..... ... ..++..++++++.|+.++ .|.++++++++.+.....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~-r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQG-RAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp CCEEEECC---CEEEEECSSC-CBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred eEEEEecCCCceeeCCCCCCC-ccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 477899886543322111110 111 222345788889899553 466678888877655543
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.08 Score=56.47 Aligned_cols=202 Identities=9% Similarity=0.045 Sum_probs=108.9
Q ss_pred cEEEEEeCCCcEEEEEeecceeEEeeccc-ccCeeEEEE---ccCCCEEEEE-eCCCcEEEEEcCCCceeeeeeeecCCC
Q 001178 888 NIIAIGMEDSTIQIYNVRVDEVKTKLKGH-QKHITGLAF---STNLNILVSS-GSDAQLIFWNTDTWEKRKSIAIQLPAG 962 (1131)
Q Consensus 888 ~~la~g~~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~---s~dg~~l~s~-~~Dg~v~lwd~~~~~~~~~~~~~~~~~ 962 (1131)
.++++++.||.|+-+|..+|+.+-.++.. ..++....- ..++..++.. +.||.|..++..+|........ +..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~--~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSI--RQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEH--HHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecc--ccc
Confidence 46788999999999999999988777654 122222110 0123344443 6899999999888754332221 111
Q ss_pred CCCCCceE---EEE------cCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCC-----eEEEEEc-----cCCCE
Q 001178 963 KLPVGETR---VQF------HSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSP-----ISSAAYS-----CNSQL 1023 (1131)
Q Consensus 963 ~~~~~v~~---v~~------s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-----v~~i~~s-----~dg~~ 1023 (1131)
....+... ... +.++..++.+.++.+...|+.+|+.+..+..... ... ..|.... ..+..
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK-NGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB-CC--------------------CCE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC-cccccccccccccccccccccCCCe
Confidence 11111111 001 2455555556799999999999999988765421 110 1111111 12457
Q ss_pred EEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCcccc
Q 001178 1024 IYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKW 1100 (1131)
Q Consensus 1024 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w 1100 (1131)
|+.+..+..+.+.+ .+|+ +.......+.+.. ....+.. .... ..++.+ +.++.||.|.-.|...+..+|
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~---~~~~~~~-~~~~-s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV---LDVPLAL-QNTF-SKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCT---TTHHHHT-TCSS-CSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccc---ccccccc-cccc-ccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777777777777 4564 3322211111100 0000000 0000 013444 558889999999999999999
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.74 E-value=0.046 Score=53.25 Aligned_cols=149 Identities=11% Similarity=-0.073 Sum_probs=83.7
Q ss_pred CeeEEEecCCCCEEEEEeCCeEEEEECCCcee------EEEEe-CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc
Q 001178 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKV------MTTFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~------~~~~~-~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~ 907 (1131)
.+..++|+|+|.+.++ .+|.+.-.+..+... -..+- ..-..-.++.|.| ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5669999999998887 888876666544211 11110 0001137889999 8888877 5698887765332
Q ss_pred ee-------EEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee-eeecCCCCCCCCceEEEEcCCCcE
Q 001178 908 EV-------KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI-AIQLPAGKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 908 ~~-------~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~-~~~~~~~~~~~~v~~v~~s~d~~~ 979 (1131)
.. ...-.+--..+..|.|.|+|.+.+.. |+.++-+...+.....-. ...............+.|.+++.+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence 11 11111122468999999999888777 776543332221100000 000000000123445679999988
Q ss_pred EEEEeCCeEEE
Q 001178 980 LLVNHETQLAI 990 (1131)
Q Consensus 980 l~~~~d~~i~v 990 (1131)
.++. ++.++-
T Consensus 196 ~~v~-~g~~Y~ 205 (236)
T 1tl2_A 196 FGVQ-GGKFYE 205 (236)
T ss_dssp EEEE-TTEEEE
T ss_pred EEEe-CCeEEe
Confidence 8877 664443
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.69 E-value=1.2 Score=47.39 Aligned_cols=224 Identities=13% Similarity=0.112 Sum_probs=112.7
Q ss_pred CeEEEEECCCceeEEE-EeCCCCCeeEEEEeCCCCcEEEEEeC----CC-------cEEEEEeecceeEE--eecccccC
Q 001178 854 GKVSLFNMMNFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGME----DS-------TIQIYNVRVDEVKT--KLKGHQKH 919 (1131)
Q Consensus 854 g~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~----dg-------~I~iwd~~~~~~~~--~~~~h~~~ 919 (1131)
..+..||..+.+-... +.....+....+... ++.+++.|+. ++ .+.+||..+.+-.. .+......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 4588999988765442 222223333334444 7788888883 12 17778877654322 22211111
Q ss_pred eeEEEEccCCCEEEEEeCC-------CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-------C
Q 001178 920 ITGLAFSTNLNILVSSGSD-------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-------E 985 (1131)
Q Consensus 920 V~~l~~s~dg~~l~s~~~D-------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-------d 985 (1131)
-..+.+ +++.++.||.+ ..+.+||+.+.+-..... .+... .-.+++. .++++++.|. -
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r---~~~~~~~-~~~~iyv~GG~~~~~~~~ 174 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN--LPIKV---YGHNVIS-HNGMIYCLGGKTDDKKCT 174 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC--CSSCE---ESCEEEE-ETTEEEEECCEESSSCBC
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC--CCCcc---cccEEEE-ECCEEEEEcCCCCCCCcc
Confidence 222222 66777777764 247888888754332211 11111 1112222 4566555542 2
Q ss_pred CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCceeeEecCCccccCCCCCC
Q 001178 986 TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPSAYMSQASPNS 1060 (1131)
Q Consensus 986 ~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1131)
..+.+||+.+.+-...-.... ....-.++. -++++++.|+.+ ..+.+||..+.+-.. +.. .+.....+
T Consensus 175 ~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~---~p~~r~~~ 247 (318)
T 2woz_A 175 NRVFIYNPKKGDWKDLAPMKT-PRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV-MTE---FPQERSSI 247 (318)
T ss_dssp CCEEEEETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEE-CCC---CSSCCBSC
T ss_pred ceEEEEcCCCCEEEECCCCCC-CcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEE-CCC---CCCcccce
Confidence 358999998765332211111 011112222 367888888743 357789988765332 221 11110001
Q ss_pred CCccccEEEEEcCCCCCeEEEEecCC--------------cEEEEecCCCcccccccc
Q 001178 1061 SQTVFPLVVTSHPQEPNQLAVGLTDG--------------SVKVIEPSETERKWGVAV 1104 (1131)
Q Consensus 1061 ~~~v~~~~v~~~p~~~~~l~s~~~Dg--------------~v~iW~~~~~~~~w~~~~ 1104 (1131)
. .+.. ++.+++.||.++ .+.+||+.+.+ |....
T Consensus 248 -----~-~~~~---~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~ 294 (318)
T 2woz_A 248 -----S-LVSL---AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE--WAGML 294 (318)
T ss_dssp -----E-EEEE---TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE--EEEEE
T ss_pred -----E-EEEE---CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE--ehhhc
Confidence 1 1221 457888887653 46677776654 88763
No 339
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.60 E-value=0.56 Score=50.07 Aligned_cols=191 Identities=13% Similarity=0.092 Sum_probs=97.0
Q ss_pred ecCCCCEEEEEe-----CC-------eEEEEECCCceeEEEEeCCCCCe-eEEEEeCCCCcEEEEEeCC--------CcE
Q 001178 841 LSKNDSYVMSAG-----GG-------KVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMED--------STI 899 (1131)
Q Consensus 841 ~s~dg~~la~~~-----dg-------~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~d--------g~I 899 (1131)
...+++.++.|+ ++ .+.+||..+.+-...-..+..+. .+++.. ++++++.|+.+ ..+
T Consensus 42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCE
T ss_pred EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceE
Confidence 345777776665 11 27788988765422211111111 122222 56777777743 458
Q ss_pred EEEEeecceeE--EeecccccCeeEEEEccCCCEEEEEeC-C-----CcEEEEEcCCCceeeeeeeecCCCCCCCCceEE
Q 001178 900 QIYNVRVDEVK--TKLKGHQKHITGLAFSTNLNILVSSGS-D-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRV 971 (1131)
Q Consensus 900 ~iwd~~~~~~~--~~~~~h~~~V~~l~~s~dg~~l~s~~~-D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v 971 (1131)
.+||..+.+-. ..+......-.++ ..+++.++.||. + ..+.+||+.+.+-..... .+.. .....+
T Consensus 120 ~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~---r~~~~~ 192 (315)
T 4asc_A 120 MCYDRLSFKWGESDPLPYVVYGHTVL--SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP--MQTA---RSLFGA 192 (315)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC--CSSC---CBSCEE
T ss_pred EEECCCCCcEeECCCCCCcccceeEE--EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC--CCCc---hhceEE
Confidence 89998876422 2222111111222 246677777776 2 368899988755332221 1111 111222
Q ss_pred EEcCCCcEEEEE-eC-----CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC--------------C
Q 001178 972 QFHSDQVRLLVN-HE-----TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD--------------G 1031 (1131)
Q Consensus 972 ~~s~d~~~l~~~-~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d--------------g 1031 (1131)
+.. ++++++.| .+ ..+.+||+.+.+-...-..... ......+. -++++++.|+.+ .
T Consensus 193 ~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~ 268 (315)
T 4asc_A 193 TVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-RSSLSLVS--LVGTLYAIGGFATLETESGELVPTELN 268 (315)
T ss_dssp EEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEE
T ss_pred EEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-ccceeEEE--ECCEEEEECCccccCcCCccccccccC
Confidence 222 55555554 32 2588999987643332111110 11222222 367888888754 2
Q ss_pred cEEEEECCCCcee
Q 001178 1032 SIGVFDADSLRLR 1044 (1131)
Q Consensus 1032 ~i~vwd~~~~~~~ 1044 (1131)
.+.+||..+.+-.
T Consensus 269 ~v~~yd~~~~~W~ 281 (315)
T 4asc_A 269 DIWRYNEEEKKWE 281 (315)
T ss_dssp EEEEEETTTTEEE
T ss_pred cEEEecCCCChhh
Confidence 4778898877543
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.55 E-value=2.9 Score=43.95 Aligned_cols=176 Identities=13% Similarity=0.104 Sum_probs=102.2
Q ss_pred EEecCCCCEEEEEe-C--------------CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEe--CCCcEEE
Q 001178 839 VALSKNDSYVMSAG-G--------------GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM--EDSTIQI 901 (1131)
Q Consensus 839 l~~s~dg~~la~~~-d--------------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~--~dg~I~i 901 (1131)
--++++|.+|.-.. . ..|+..++.+.+....... .+..|++ ++..|+... .++.-.|
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~-----~~~~~s~-~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD-----PCIYASL-IGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS-----CEEEEEE-ETTEEEEEEESSSSCEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC-----CccEEEE-eCCEEEEEeecCCCCceE
Confidence 45678899888775 2 2477777777653332221 1236777 666676665 3444444
Q ss_pred EEee-cceeEEeecccccCeeEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcE
Q 001178 902 YNVR-VDEVKTKLKGHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 902 wd~~-~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 979 (1131)
|.+. .+.....+..+.. .+|+++++.|.-.+. ..+|..-++..+..... . .+ . ....+.|++.+
T Consensus 132 y~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l--~---~~----~-~~~~~~P~g~~ 197 (302)
T 3s25_A 132 YRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALF--Y---DC----N-CYKPVVLDDTN 197 (302)
T ss_dssp EEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEE--E---CS----C-EEEEEEEETTE
T ss_pred EEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEE--e---CC----C-ccceeeecCCE
Confidence 4443 2333344443432 467888888886655 67788888877553211 1 11 1 12346699999
Q ss_pred EEEEe---CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCc
Q 001178 980 LLVNH---ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT--DGSIGVFDADSLR 1042 (1131)
Q Consensus 980 l~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~--dg~i~vwd~~~~~ 1042 (1131)
|+... ...|..-++..... ..+. ...+ ..|+|++++|+-+.. .+.|..-+++...
T Consensus 198 iy~t~~~~~~~I~~~~ldG~~~-~~Lt-----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 198 VYYMDVNRDNAIVHVNINNPNP-VVLT-----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EEEEEGGGTTEEEEECSSSCCC-EECS-----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred EEEEEcCCCcEEEEEECCCCCe-EEEe-----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 98754 23577777765543 2222 2233 348889998887642 3567777766443
No 341
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.43 E-value=0.56 Score=49.89 Aligned_cols=188 Identities=13% Similarity=0.074 Sum_probs=96.6
Q ss_pred CCCEEEEEeC----------CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC-----CcEEEEEeecce
Q 001178 844 NDSYVMSAGG----------GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED-----STIQIYNVRVDE 908 (1131)
Q Consensus 844 dg~~la~~~d----------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-----g~I~iwd~~~~~ 908 (1131)
++++++.|+. ..+.+||..+.+-...-..+.......+..- ++++++.|+.+ ..+.+||..+.+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 5666666542 3588999887653332111112211111222 56788877654 358888887664
Q ss_pred eEE--eecccccCeeEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEE
Q 001178 909 VKT--KLKGHQKHITGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL 981 (1131)
Q Consensus 909 ~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 981 (1131)
-.. .+......-.++.+ ++++++.|+.+ ..+.+||+.+.+-..... .+.. .....++.. ++++++
T Consensus 149 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~---r~~~~~~~~-~~~iyv 220 (308)
T 1zgk_A 149 WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA--MNTI---RSGAGVCVL-HNCIYA 220 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC--CSSC---CBSCEEEEE-TTEEEE
T ss_pred EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC--CCCc---cccceEEEE-CCEEEE
Confidence 322 22211112222233 67777777765 358899988765332221 1111 111222222 556555
Q ss_pred EEe-C-----CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCce
Q 001178 982 VNH-E-----TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRL 1043 (1131)
Q Consensus 982 ~~~-d-----~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~ 1043 (1131)
.|. + ..+.+||+.+.+-...-.... .......+. -++++++.|+.+ ..+.+||..+.+-
T Consensus 221 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 221 AGGYDGQDQLNSVERYDVETETWTFVAPMKH-RRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred EeCCCCCCccceEEEEeCCCCcEEECCCCCC-CccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 542 2 568999998764332211111 011222222 367888888754 4578888877653
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.39 E-value=0.54 Score=58.89 Aligned_cols=236 Identities=11% Similarity=0.143 Sum_probs=135.6
Q ss_pred EEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 001178 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433 (1131)
Q Consensus 354 ~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i 433 (1131)
-.+|..+ ++|.-. ..++.|+|+++.+.+....+ ...|..=.|-.+.. |+..+ +..|
T Consensus 72 IMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~~-l~lVT-~~aV 127 (1630)
T 1xi4_A 72 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNT-VALVT-DNAV 127 (1630)
T ss_pred ccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCCe-eEEEc-CCeE
Confidence 3456555 566554 57899999998887763221 23566666765443 43333 3579
Q ss_pred EEEEecCCCccceeeeeecC----cCCeeEEEEecCCCceEEEEEc------CCCcEEEEeCCCceeEEecCCccCeEEE
Q 001178 434 HLYTYQGSNDLCQSLEIDAH----VGGVNDLAFSYPNKQLCIVTCG------DDKLIRVWDLSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 434 ~vwd~~~~~~~~~~~~~~~h----~~~V~~l~~s~d~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~h~~~v~~~ 503 (1131)
.-|++.+.....+ .+.-| ...|..-.-+++.+++ +++|= -.|.+.+|....+..+.+.||.+.-..+
T Consensus 128 yHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~ 204 (1630)
T 1xi4_A 128 YHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQF 204 (1630)
T ss_pred EEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeecccccchhhhHhHhhhhee
Confidence 9999976432221 22333 3467888889999963 33331 3578889987777777777877655554
Q ss_pred eecccCCccEEEEEec----CCeEEEEeCCCC---ceeE-----E--ecC--CCceEEEEEEccCCCEEEEEeecCCCCc
Q 001178 504 CPHQKENIHFIFSTAV----DGKIKAWLYDNV---GSRV-----D--YDA--PGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~----dg~i~~wd~~~~---~~~~-----~--~~~--~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 567 (1131)
.....+....+++-.. .+.+++-++... .... . +.. ...-..++..++.-..+...+. -|
T Consensus 205 ~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~G 280 (1630)
T 1xi4_A 205 KMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----YG 280 (1630)
T ss_pred ccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----Cc
Confidence 4432222223333222 268888887543 1111 0 111 1223456777777777776665 88
Q ss_pred eEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
.|+++|+.+|.++..-+-... +|...+......-+++....|.|.--.++...
T Consensus 281 ~~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 281 YIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred eEEEEecccchhhhhccccCC-ceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 999999999988755442222 44443333333344444455555555544443
No 343
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.96 E-value=2.5 Score=44.96 Aligned_cols=222 Identities=10% Similarity=0.010 Sum_probs=102.7
Q ss_pred eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC----CC-------cEEEEeCCCceeEEecC---Cc
Q 001178 432 LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD----DK-------LIRVWDLSGRKLFQFEG---HE 497 (1131)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~----d~-------~i~iwd~~~~~~~~~~~---h~ 497 (1131)
.+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|.....-..+.. ..
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 47888888765322 12221112222233344565 6666762 11 16777833333333221 11
Q ss_pred cCeEEEeecccCCccEEEEEecC-------CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCC--CCce
Q 001178 498 APVYSVCPHQKENIHFIFSTAVD-------GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKE--GDSH 568 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~--~~~~ 568 (1131)
.....+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+...+++.++.++...+ ....
T Consensus 101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 11122222 33566677653 24677777654422221111111111122246667777764221 1346
Q ss_pred EEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC-----CcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED-----NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
+.+||..+.+....-.........+++.. ++..++.|+.+ ..+.+||..+.+-...-..... .....+..-+
T Consensus 177 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~ 253 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVSLA 253 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEEET
T ss_pred EEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEEEC
Confidence 89999988765433221111111222222 55666666643 3577899887764433222111 1111222234
Q ss_pred CCEEEEEECC--------------CcEEEEecCCC
Q 001178 644 GNLLVVTTAD--------------QGIKILANADG 664 (1131)
Q Consensus 644 ~~~l~~~~~d--------------g~i~iw~~~~~ 664 (1131)
+.+++.|+.+ ..+.+||..+.
T Consensus 254 ~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 254 GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp TEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred CEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 6666776643 34666776554
No 344
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.80 E-value=4.7 Score=42.27 Aligned_cols=180 Identities=12% Similarity=0.055 Sum_probs=100.8
Q ss_pred EEEEecCCCcEEEEEcCC-------------CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 352 SMDFHPFHHTLLVVGCGD-------------GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 352 ~~~fspdg~~llasg~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
+--|+++|.++..+...+ ..|+..++..++... +... . +.+|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~--~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD--P--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS--C--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC--C--ccEEE
Confidence 345688999877776544 467777777664321 1111 1 23788
Q ss_pred CCCCEEEEEe--CC--CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec
Q 001178 419 PDGNFIGVAF--TK--HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE 494 (1131)
Q Consensus 419 pdg~~las~~--~d--~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 494 (1131)
+++++|+-.. .+ ..|...++.+.. .. .+..+.. .+|+++++. +..+......|.+-+..|.....+.
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999998876 23 345555555433 22 2443432 567889985 3334444678888887776555553
Q ss_pred CCccCeEEEeecccCCccEEEEEecC--CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEE
Q 001178 495 GHEAPVYSVCPHQKENIHFIFSTAVD--GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 572 (1131)
. +... ..+.| ++.+|+-...+ ..|..-+++..... .+.. ..+ ..++|++++|..+... ....|..-
T Consensus 184 ~--~~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt~--~~~--~~~~~~g~~Iy~~~~~--~~~~i~~~ 251 (302)
T 3s25_A 184 D--CNCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNPV-VLTE--ANI--EHYNVYGSLIFYQRGG--DNPALCVV 251 (302)
T ss_dssp C--SCEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCCE-ECSC--SCE--EEEEEETTEEEEEECS--SSCEEEEE
T ss_pred C--CCcc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCeE-EEeC--CCc--ceEEECCCEEEEEECC--CCcEEEEE
Confidence 2 2222 23333 34566655433 35555566554432 2222 223 3488899999876421 13577777
Q ss_pred eCCC
Q 001178 573 NESE 576 (1131)
Q Consensus 573 d~~~ 576 (1131)
++..
T Consensus 252 ~~DG 255 (302)
T 3s25_A 252 KNDG 255 (302)
T ss_dssp ETTS
T ss_pred ECCC
Confidence 7653
No 345
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=94.55 E-value=0.023 Score=45.40 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHhcCCCccH--HHHHHHHhccCHHHHHHH
Q 001178 5 SRELVFLILQFLDEEKFKESVHRLEQESGFFFNM--KYFEEKALAGEWDEIEKY 56 (1131)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~~--~~~~~~i~~g~w~~~~~~ 56 (1131)
++|+-+-|++||..+||.+++.+|.+|.|++.+- ..-..-.|+-.|..++.+
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRL 63 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRL 63 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHH
Confidence 4689999999999999999999999999988751 112344555666666443
No 346
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.29 E-value=3.7 Score=46.12 Aligned_cols=108 Identities=18% Similarity=0.147 Sum_probs=61.4
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeeccee--EEeecc------cccCeeEEEEccC---CCE-EEEEeC----
Q 001178 874 PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV--KTKLKG------HQKHITGLAFSTN---LNI-LVSSGS---- 937 (1131)
Q Consensus 874 ~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~--~~~~~~------h~~~V~~l~~s~d---g~~-l~s~~~---- 937 (1131)
-.....++|.| +++++++-...+.|++++..+++. +..+.. ..+....|+|+|| +.. .++-+.
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34577999999 888776544334688887554533 222221 2456779999995 444 444332
Q ss_pred --------CCcEEEEEcCCCc--e--eeeeeeecCCCCCCCCceEEEEcCCCcEEEEE
Q 001178 938 --------DAQLIFWNTDTWE--K--RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1131)
Q Consensus 938 --------Dg~v~lwd~~~~~--~--~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 983 (1131)
...|.-|++.... . ........+... ......++|.|||.+.++.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~-~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSK-DHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCS-SCCEEEEEECTTSCEEEEE
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCC-CCCCCeEeECCCCeEEEEE
Confidence 2356666654321 1 111111222221 1357899999999877763
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.46 E-value=0.28 Score=52.30 Aligned_cols=188 Identities=10% Similarity=0.067 Sum_probs=103.2
Q ss_pred EEEEEcCCCcEEEEe-CCCceeEEecCC-ccCeEEEeeccc-CCccEEEEE-ecCCeEEEEeCCCCceeEEecCC----C
Q 001178 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGH-EAPVYSVCPHQK-ENIHFIFST-AVDGKIKAWLYDNVGSRVDYDAP----G 541 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd-~~~~~~~~~~~h-~~~v~~~~~~~~-~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~----~ 541 (1131)
+++.++.||.|.-.| .+|+.+.++... ..++....-... .++..++.. +.||.|..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 588899999999999 899998888654 123332211111 122333333 68999999998876554433221 1
Q ss_pred ceEEE---EEE-----ccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCc------eEEEEEe-----CCCCE
Q 001178 542 LWCTT---MLY-----SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS------AGVVQFD-----TTRNR 602 (1131)
Q Consensus 542 ~~v~~---~~~-----s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~------v~~~~~s-----~~~~~ 602 (1131)
.++.. ..+ ...+..+++++. +++++..|..+|+.+..+....... ..|.... ..+..
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 11111 000 014556777776 8999999999999999887432111 0111110 12356
Q ss_pred EEEEEcCCcEEEEEcCCCeEEEEEec--cCCCCCcc-----eEEEcCCCCEEEEEECCCcEEEEecCCCc
Q 001178 603 ILAAGEDNQIKFWDMDNVNMLTSTEA--EGGLPSLP-----RLRFNKEGNLLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 603 l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~-----~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 665 (1131)
++.+..+..+.+.+ .+|+ +..... .... .+. .-..+.|+.+ ++++.||.|.-+|..++.
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~-~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQN-VLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRI 233 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECC-TTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCC
T ss_pred EEEecceEEEEEEC-CCCC-eEEEeccccccc-ccccccccccccccCCcE-EEECCCCEEEEEECCCCc
Confidence 77777777777666 3443 211100 0000 000 0011234555 557889999999887774
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.10 E-value=14 Score=41.56 Aligned_cols=253 Identities=11% Similarity=0.111 Sum_probs=138.4
Q ss_pred CCCCEEEEEe--CCeEEEEECCCceeEEEEeCC-CCCeeEEEEe--CCCCcEEEEEeC-------CCcE---------EE
Q 001178 843 KNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP-PPASTFLAFH--PQDNNIIAIGME-------DSTI---------QI 901 (1131)
Q Consensus 843 ~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s--~~~~~~la~g~~-------dg~I---------~i 901 (1131)
-||++|..-. ...|...++...++-+.+..+ ...+..++|- | +..+++.+++ ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 4889999988 577999999999887777644 3568888886 6 5666666653 2321 11
Q ss_pred E---EeecceeEEeecccccCeeEEEEccCCCEEEEEeCC---------------CcEEEEEcCC-------Cc--eee-
Q 001178 902 Y---NVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD---------------AQLIFWNTDT-------WE--KRK- 953 (1131)
Q Consensus 902 w---d~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D---------------g~v~lwd~~~-------~~--~~~- 953 (1131)
| |..+-+...++.- .+....+...++|++.++.+.+ ..+.++++.. ++ ...
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 1 1111111111110 1233345556777777665432 1345554432 10 000
Q ss_pred --eeeeecCC----C-------CCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCccc---------ceeeecCCCCC
Q 001178 954 --SIAIQLPA----G-------KLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKMEC---------IRQWVPQDVLS 1009 (1131)
Q Consensus 954 --~~~~~~~~----~-------~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~---------~~~~~~~~~~~ 1009 (1131)
...+.... + ..+.....+.++|||++++++. +.++.|+|...... ...+.......
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 00010000 0 0013445688999999999975 78899999885221 11111111114
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCCC----------ceeeEecCCccccCCCCC-CCCccccEEEEEcCCCCCe
Q 001178 1010 SPISSAAYSCNSQLIYATFTDGSIGVFDADSL----------RLRCRIAPSAYMSQASPN-SSQTVFPLVVTSHPQEPNQ 1078 (1131)
Q Consensus 1010 ~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~~~~~-~~~~v~~~~v~~~p~~~~~ 1078 (1131)
-.....+|.++|....+-..|..|..|++... ..+.++.. +|-++|.-. .+.. ...++.+
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv-~YqpGH~~~~~get--------~~~dGk~ 448 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDV-HYQPGHLHASLCET--------NEADGKW 448 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEEC-SSCEEEEEETTTTS--------TTCCSCE
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccc-ccCCcccccCCCcc--------CCCCccE
Confidence 56678899999954444458999999999764 34444443 223322100 0000 0126677
Q ss_pred EEEEec---CCc----------EEEEecCCCccccccccCC
Q 001178 1079 LAVGLT---DGS----------VKVIEPSETERKWGVAVPV 1106 (1131)
Q Consensus 1079 l~s~~~---Dg~----------v~iW~~~~~~~~w~~~~p~ 1106 (1131)
|++... |+- -.+.|++.++++..+-.|.
T Consensus 449 lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM~lv~D~P~ 489 (638)
T 3sbq_A 449 LVALSKFSKDRFLPVGPLHPENDQLIDISGDEMKLVHDGPT 489 (638)
T ss_dssp EEEEESCCTTSSCCCSSSCCEEEEEEECSSSSCEEEEEEEE
T ss_pred EEEecccccccCcCCCCCCCCcceeEecCCCceEEEecCCC
Confidence 777654 443 3678888888885555444
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.76 E-value=15 Score=41.09 Aligned_cols=116 Identities=15% Similarity=0.107 Sum_probs=62.3
Q ss_pred CcEEEEEEecCCC-cEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceecc----CCCCCEEEEEEcCC--
Q 001178 348 SSVVSMDFHPFHH-TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK----DSSISVSRVAWSPD-- 420 (1131)
Q Consensus 348 ~~V~~~~fspdg~-~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~V~~~~~spd-- 420 (1131)
...+.|+|.|||+ ++++ ....|.|++++.... .... . +-++. ..+.. +.......|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~-~~~~-~--~~~~~-------~~~~~g~~~~~e~Gllgia~~P~f~ 81 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFI-LEKEGYVKILTPEGE-IFKE-P--YLDIH-------KLVQSGIKGGDERGLLSLAFHPNYK 81 (463)
T ss_dssp SSEEEEECCSSSSCCEEE-EETTTEEEEECTTSC-BCSS-C--SEECT-------TTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred CCceEEEECCCCCeEEEE-EeCCceEEEEeCCCC-eeee-e--ecCCc-------ceeccCccccCCCcceeeEeCCCCc
Confidence 4678999999995 5555 457899999975432 1110 1 01110 00111 23567889999996
Q ss_pred --CCEEEEEeC--C----------CeEEEEEecCC--C-----ccceeeeee--cCcCCeeEEEEecCCCceEEEEEcCC
Q 001178 421 --GNFIGVAFT--K----------HLIHLYTYQGS--N-----DLCQSLEID--AHVGGVNDLAFSYPNKQLCIVTCGDD 477 (1131)
Q Consensus 421 --g~~las~~~--d----------~~i~vwd~~~~--~-----~~~~~~~~~--~h~~~V~~l~~s~d~~~~~l~s~s~d 477 (1131)
+.+.++-+. + ..|.-|.+..+ . ..+.+..+. ........|+|.|||. +.++.+..
T Consensus 82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~--LYv~~Gd~ 159 (463)
T 2wg3_C 82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF--LYIILGDG 159 (463)
T ss_dssp HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC--EEEEECCT
T ss_pred CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc--EEEEeCCC
Confidence 444443332 1 14555666432 1 011222222 2223468899999997 55555543
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.54 E-value=8 Score=40.06 Aligned_cols=220 Identities=14% Similarity=0.132 Sum_probs=110.7
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
..|..++..... .++. . ||.|..|-......+.. +. .....|..++...+- .++.
T Consensus 24 ~~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-p~------------------~~~~~i~~ia~G~~h-s~~l- 78 (282)
T 3qhy_B 24 SGVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-PA------------------ATQSGVDAIAAGNYH-SLAL- 78 (282)
T ss_dssp SSCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-CG------------------GGGSCCCEEEECSSE-EEEE-
T ss_pred CCCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-Cc------------------cCCCCEEEEEeCCCE-EEEE-
Confidence 356666655443 3444 4 89999998765443321 00 011246666655432 3333
Q ss_pred eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeEEEee
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCP 505 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~~~~~ 505 (1131)
. ||.|..|-......+.....+ ...|..++...+-. +++ . |+.|..|- ..++.-. .......|..++.
T Consensus 79 ~-~G~v~~wG~n~~Gqlg~P~~~---~~~v~~ia~G~~hs--~al--~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~ 148 (282)
T 3qhy_B 79 K-DGEVIAWGGNEDGQTTVPAEA---RSGVDAIAAGAWAS--YAL--K-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDG 148 (282)
T ss_dssp E-TTEEEEEECCTTSTTCCCGGG---SSSEEEEEEETTEE--EEE--E-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEE
T ss_pred E-CCEEEEeeCCCCCCCCCCccc---CCCeEEEECcCCEE--EEE--e-CCeEEEecCCCCCcCCC-CccCCCCeEEEEc
Confidence 4 889999986653333211111 24677777765533 333 3 89999997 3333211 1122345666654
Q ss_pred cccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC-CeeeEEEe
Q 001178 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYI 584 (1131)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~ 584 (1131)
. ....++ -. ||.|..|-.......-........|..++...+...++ . ++.++.|-... +++- +.
T Consensus 149 G---~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg--~p 214 (282)
T 3qhy_B 149 G---VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTT--VP 214 (282)
T ss_dssp C---SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTC--CC
T ss_pred c---cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCC--CC
Confidence 2 212333 34 79999996554332211111123466665544333322 3 77888886543 2221 01
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 585 GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
......+..++... .+.++.. ||.|+.|-...
T Consensus 215 ~~~~~~v~~i~~G~--~h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 215 TEALSGVSAIASGE--WYSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp GGGGSSCCEEEECS--SCEEEEE-TTEEEEESTTC
T ss_pred cccCCCceEEEcCC--CEEEEEE-CCEEEEecCCC
Confidence 01112455555443 2333333 89999997654
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.95 E-value=12 Score=38.74 Aligned_cols=183 Identities=13% Similarity=0.051 Sum_probs=97.0
Q ss_pred CeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec
Q 001178 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK 914 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~ 914 (1131)
.|..++...+-. ++. .+|.|..|-....-.+..-..-...|..++... ...+.-+ ||.|+.|-....-.+....
T Consensus 64 ~i~~ia~G~~hs-~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 455555543322 223 378888886543221111111124677777754 2333345 9999999765422121122
Q ss_pred ccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCC
Q 001178 915 GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGS 994 (1131)
Q Consensus 915 ~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~ 994 (1131)
.....|..++...+.. ++ -. ||.|+.|-......... +.. ....+..++.......+ . .++.++.|-..
T Consensus 138 ~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg~-p~~-----~~~~v~~i~~G~~hs~a-l-~~G~v~~wG~n 206 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTTV-PAE-----AQSGVDDVAGGIFHSLA-L-KDGKVIAWGDN 206 (282)
T ss_dssp GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTSC-CGG-----GGSSEEEEEECSSEEEE-E-ETTEEEEEECC
T ss_pred cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCCC-cee-----cCCCeEEEEecCCEEEE-E-ECCeEEEEECC
Confidence 2335677777654432 22 33 79999997765322110 111 01456677665554444 4 79999999776
Q ss_pred CcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 001178 995 KMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 995 ~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
....+..-... ...|..++...+..++++ ||.|+.|-...
T Consensus 207 ~~gqlg~p~~~---~~~v~~i~~G~~h~~al~---~g~v~~wG~n~ 246 (282)
T 3qhy_B 207 RYKQTTVPTEA---LSGVSAIASGEWYSLALK---NGKVIAWGSSR 246 (282)
T ss_dssp TTSTTCCCGGG---GSSCCEEEECSSCEEEEE---TTEEEEESTTC
T ss_pred CCCCCCCCccc---CCCceEEEcCCCEEEEEE---CCEEEEecCCC
Confidence 53322211111 346777776544433333 99999997654
No 352
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.80 E-value=6.8 Score=46.86 Aligned_cols=199 Identities=8% Similarity=0.031 Sum_probs=100.2
Q ss_pred CCCCEEEEEeCC----CeEEEEEecCCCccceeee-----eecCcCCeeEEEEec-CCCceEEEEEcCC------CcEEE
Q 001178 419 PDGNFIGVAFTK----HLIHLYTYQGSNDLCQSLE-----IDAHVGGVNDLAFSY-PNKQLCIVTCGDD------KLIRV 482 (1131)
Q Consensus 419 pdg~~las~~~d----~~i~vwd~~~~~~~~~~~~-----~~~h~~~V~~l~~s~-d~~~~~l~s~s~d------~~i~i 482 (1131)
-++..++.|+.+ ..+.+||..+++-...... +...... .+++..+ +++ +++.||.+ +.+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~--lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQ--LLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTE--EEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCE--EEEEcCCCCCCCccccEEE
Confidence 567777777753 4688999887642211101 1111111 2233333 565 66666643 35778
Q ss_pred EeCCCceeEEecC---CccCeEEEeecccCCccEEEEEecCC--eEEEEeCCCCceeEEe-----cCCCceEEEEEEccC
Q 001178 483 WDLSGRKLFQFEG---HEAPVYSVCPHQKENIHFIFSTAVDG--KIKAWLYDNVGSRVDY-----DAPGLWCTTMLYSAD 552 (1131)
Q Consensus 483 wd~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~s~dg--~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~s~~ 552 (1131)
||.....-..+.. ....-.++.+ .++.+++.|+.++ .+.+||..+..-...- ........++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~---~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSL---PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEEC---TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEE---cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 8833322222211 1111122221 2456777777655 6888888765422211 111112233555655
Q ss_pred -CCEEEEEeecCCC---CceEEEEeCCCCe------eeEEEec-ccCCceEEEEEeCCCCEEEEEEc--------CCcEE
Q 001178 553 -GSRLFSCGTSKEG---DSHLVEWNESEGA------LKRTYIG-FRKKSAGVVQFDTTRNRILAAGE--------DNQIK 613 (1131)
Q Consensus 553 -g~~l~~~~~~~~~---~~~i~iwd~~~~~------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~--------dg~i~ 613 (1131)
++.++.|+...++ ...+.+||+.+.. ....-.. .....-.+++...++..++.|+. ...+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 6666676653222 3578999998877 2222111 11111222333333666777764 35699
Q ss_pred EEEcCCCeEE
Q 001178 614 FWDMDNVNML 623 (1131)
Q Consensus 614 iwd~~~~~~~ 623 (1131)
+||..+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999887655
No 353
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=91.80 E-value=19 Score=42.81 Aligned_cols=245 Identities=8% Similarity=-0.014 Sum_probs=121.5
Q ss_pred EEEE-EecCCCcEEEEEcCC----CeEEEEECCCCcccccccceeecccccccceeceeccC---CCCCEEEEEEcCCCC
Q 001178 351 VSMD-FHPFHHTLLVVGCGD----GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD---SSISVSRVAWSPDGN 422 (1131)
Q Consensus 351 ~~~~-fspdg~~llasg~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~~~~spdg~ 422 (1131)
..+. ++||+++++++=|.. .+|+++|+.+++.+.. .|. ... ++ -......++|..+..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~------------k~~~~~~~~~~~~~W~d~~~ 197 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PIT------------NSGKLLEGKFTYPTWINKDT 197 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBC------------TTCCBCCEETCCEEEEETTE
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-ccc------------ccccccccccceeeEECCCE
Confidence 3444 889998766554433 4699999999987752 111 000 00 000113346764333
Q ss_pred EEEEE----------eCCCeEEEEEecCCCccceeeeeecCcCC-eeEEEEecCCCc---eEEEEEcCC---CcEEEEeC
Q 001178 423 FIGVA----------FTKHLIHLYTYQGSNDLCQSLEIDAHVGG-VNDLAFSYPNKQ---LCIVTCGDD---KLIRVWDL 485 (1131)
Q Consensus 423 ~las~----------~~d~~i~vwd~~~~~~~~~~~~~~~h~~~-V~~l~~s~d~~~---~~l~s~s~d---~~i~iwd~ 485 (1131)
++++. +....|+.|.+-+...- -...+.+.... -.+...+++++. ..+++.+.+ ..+.+.|.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 276 (711)
T 4hvt_A 198 IIFNLVLHKNEITSSLYPNSLYIWKRGESIEK-AKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDT 276 (711)
T ss_dssp EEECCCCSTTCBCTTSSBCEEEEEETTSCGGG-CEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEEC
T ss_pred EEEEeCCCCCCcCcCCCCCEEEEEECCCChHH-CeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcC
Confidence 33321 11246888887654221 11123333333 234556677764 135554322 34555563
Q ss_pred C---CceeEEecCCccCeEEEeecccCCccEEEEE----------ecCCeEEEEeCCCCc-------eeEE-e-cCCCce
Q 001178 486 S---GRKLFQFEGHEAPVYSVCPHQKENIHFIFST----------AVDGKIKAWLYDNVG-------SRVD-Y-DAPGLW 543 (1131)
Q Consensus 486 ~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------s~dg~i~~wd~~~~~-------~~~~-~-~~~~~~ 543 (1131)
. ++ +..+....... -+. + .++.+++.. ...+.|...++.+.. .... + ......
T Consensus 277 ~~~~~~-~~~l~~~~~~~-~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (711)
T 4hvt_A 277 KYKNLK-LQKINMPSDAT-LQG-S--FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEV 351 (711)
T ss_dssp SSSSCE-EEECCSCTTCE-EEE-E--ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEE
T ss_pred CCCCCc-ceEeecCCcce-Eee-e--ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCe
Confidence 3 33 23332111111 011 1 122344422 246778888887642 1122 2 223446
Q ss_pred EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe-eeEE-EecccCCceEEEEEeCCCCEEE-EEE---cCCcEEEEEc
Q 001178 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRT-YIGFRKKSAGVVQFDTTRNRIL-AAG---EDNQIKFWDM 617 (1131)
Q Consensus 544 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~v~~~~~s~~~~~l~-~~~---~dg~i~iwd~ 617 (1131)
+..+.+..+ ..+++... ++...+.+++..++. .... +.......+.....++++..++ +.+ .-+.++.+|+
T Consensus 352 l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 352 FNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp EEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 778888876 34444432 345678899887775 2333 3222223566666667765444 333 3467888887
Q ss_pred C
Q 001178 618 D 618 (1131)
Q Consensus 618 ~ 618 (1131)
.
T Consensus 429 ~ 429 (711)
T 4hvt_A 429 T 429 (711)
T ss_dssp T
T ss_pred C
Confidence 6
No 354
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.63 E-value=6.3 Score=47.15 Aligned_cols=198 Identities=13% Similarity=0.162 Sum_probs=105.6
Q ss_pred CCCCEEEEEe-C----CeEEEEECCCceeEEEE-e-----CCCC--CeeEEEEeCCCCcEEEEEeCCC------cEEEEE
Q 001178 843 KNDSYVMSAG-G----GKVSLFNMMNFKVMTTF-M-----SPPP--ASTFLAFHPQDNNIIAIGMEDS------TIQIYN 903 (1131)
Q Consensus 843 ~dg~~la~~~-d----g~i~vwd~~~~~~~~~~-~-----~~~~--~i~~l~~s~~~~~~la~g~~dg------~I~iwd 903 (1131)
.++..++.|+ + ..+.+||..+++-...- . .+.. .-..+.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5667777766 2 35889998876543332 1 1111 233344432 567788887543 578888
Q ss_pred eeccee--EEeecccccCeeEEEEccCCCEEEEEeCCC--cEEEEEcCCCceeeeeee-ecCCCCCCCCceEEEEcCC-C
Q 001178 904 VRVDEV--KTKLKGHQKHITGLAFSTNLNILVSSGSDA--QLIFWNTDTWEKRKSIAI-QLPAGKLPVGETRVQFHSD-Q 977 (1131)
Q Consensus 904 ~~~~~~--~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg--~v~lwd~~~~~~~~~~~~-~~~~~~~~~~v~~v~~s~d-~ 977 (1131)
..+.+- +..+......- +++...+++.++.||.++ .+.+||+.+.+-...... ..+... .....+.+..+ +
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r--~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS--LVSAGLEFDPVSK 551 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC--CBSCEEEEETTTT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc--cceeEEEEeCCCC
Confidence 877532 22222111111 222223788888888765 689999988653222210 011111 22234555655 5
Q ss_pred cEEEEEe---C-----CeEEEEeCCCccc-----ceeeecCCCCCCCeEEEEEccCCCEEEEEec--------CCcEEEE
Q 001178 978 VRLLVNH---E-----TQLAIYDGSKMEC-----IRQWVPQDVLSSPISSAAYSCNSQLIYATFT--------DGSIGVF 1036 (1131)
Q Consensus 978 ~~l~~~~---d-----~~i~vwd~~~~~~-----~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~--------dg~i~vw 1036 (1131)
++++.|. + ..+.+||+.+... ...+.........-.+++...++++++.|+. ...|.+|
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 5555543 2 4588999987762 1121110000111123333344888888884 3469999
Q ss_pred ECCCCcee
Q 001178 1037 DADSLRLR 1044 (1131)
Q Consensus 1037 d~~~~~~~ 1044 (1131)
|..+.+-.
T Consensus 632 d~~t~~W~ 639 (695)
T 2zwa_A 632 DPLSETLT 639 (695)
T ss_dssp ETTTTEEE
T ss_pred ECCCCeEE
Confidence 99887654
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=89.65 E-value=27 Score=38.16 Aligned_cols=263 Identities=11% Similarity=0.016 Sum_probs=122.1
Q ss_pred CCCeeEEEecC--CCCEEEEEeCC----eEEEEECCCceeEEEEe------C--------CCCCeeEEEEeCCC-CcEEE
Q 001178 833 EDVVPCVALSK--NDSYVMSAGGG----KVSLFNMMNFKVMTTFM------S--------PPPASTFLAFHPQD-NNIIA 891 (1131)
Q Consensus 833 ~~~i~~l~~s~--dg~~la~~~dg----~i~vwd~~~~~~~~~~~------~--------~~~~i~~l~~s~~~-~~~la 891 (1131)
...|.+|++.| ++.+.+.+..| .|...+ ..++.-..+. . ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45688999998 66666665554 343332 2222211111 1 11247788998633 34455
Q ss_pred EEeCCCcEEEEEeecceeEEeecc-------------------cccCeeEEEEccC-CCEEEEEeCCCcEEEEEcCCCce
Q 001178 892 IGMEDSTIQIYNVRVDEVKTKLKG-------------------HQKHITGLAFSTN-LNILVSSGSDAQLIFWNTDTWEK 951 (1131)
Q Consensus 892 ~g~~dg~I~iwd~~~~~~~~~~~~-------------------h~~~V~~l~~s~d-g~~l~s~~~Dg~v~lwd~~~~~~ 951 (1131)
++...+.|...+ +.++.-..+.. ....|.+|.++|. ...|..+..++.|...+ +.++.
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence 555555544332 22222112211 1235789999873 34444444444444332 22211
Q ss_pred eeeeeeecCCCC-------CCCCceEEEEcCC-CcEEEEEeCCeEEEEeCCCcccceeeecCCCC--CCCeEEEEEcc-C
Q 001178 952 RKSIAIQLPAGK-------LPVGETRVQFHSD-QVRLLVNHETQLAIYDGSKMECIRQWVPQDVL--SSPISSAAYSC-N 1020 (1131)
Q Consensus 952 ~~~~~~~~~~~~-------~~~~v~~v~~s~d-~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~v~~i~~s~-d 1020 (1131)
-........... ....+..+++.|+ ...|.++..+.|...+-. ++....+...... ...+.+++++| +
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~~ 289 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQRD 289 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC-CCcceECCCCCCCCCccceEEEEECCCC
Confidence 000000000000 0124778899886 355666666666655422 3222222211100 13467788876 3
Q ss_pred CCEEEEEec-----------CCcEEEEECCC-CceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcE
Q 001178 1021 SQLIYATFT-----------DGSIGVFDADS-LRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSV 1088 (1131)
Q Consensus 1021 g~~l~s~~~-----------dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v 1088 (1131)
...|.++.. ++...+|.... |+....+.. .++... .-..+....++++|.++..|..++.++.
T Consensus 290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~--glp~~~--~~~~~~~~~~~~~p~~~~~l~~g~~~g~- 364 (394)
T 3b7f_A 290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR--GLPTDQ--AWLTVKRQAMTADAHAPVGVYFGTTGGE- 364 (394)
T ss_dssp TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB--TSCCSS--CCCCCCTBSEEECCSSSCCEEEECTTSC-
T ss_pred CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC--CCCCcc--ccceEEEEEEEECCCCCCEEEEEeCCCe-
Confidence 344444432 33345555443 454444431 111100 0001111246777766666777776665
Q ss_pred EEEecCCCccccccccC
Q 001178 1089 KVIEPSETERKWGVAVP 1105 (1131)
Q Consensus 1089 ~iW~~~~~~~~w~~~~p 1105 (1131)
||.-..+...|.....
T Consensus 365 -l~~S~D~G~tW~~~~~ 380 (394)
T 3b7f_A 365 -IWASADEGEHWQCIAS 380 (394)
T ss_dssp -EEEESSTTSBCEEEEC
T ss_pred -EEEECCCCCCceEccc
Confidence 4555555566887643
No 356
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=85.88 E-value=1.3 Score=40.86 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=47.7
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccccccccc
Q 001178 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLS 131 (1131)
Q Consensus 67 ~~~~~~~~~i~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 131 (1131)
++.. ++|.|+-+.||||+..|..++|..++++--.-+.....+.+++|+.+....++.+.+...
T Consensus 48 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~ 111 (156)
T 2nxp_A 48 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETML 111 (156)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGG
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHH
Confidence 4444 899999999999999999999999998654444444567888888777665554444433
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=85.88 E-value=22 Score=42.25 Aligned_cols=243 Identities=9% Similarity=0.027 Sum_probs=115.1
Q ss_pred EEE-EcCCCCEEEEE-e----CCCeEEEEEecCCCccceeeeeecCc-----CCeeEEEEecCCCceEEEEE--------
Q 001178 414 RVA-WSPDGNFIGVA-F----TKHLIHLYTYQGSNDLCQSLEIDAHV-----GGVNDLAFSYPNKQLCIVTC-------- 474 (1131)
Q Consensus 414 ~~~-~spdg~~las~-~----~d~~i~vwd~~~~~~~~~~~~~~~h~-----~~V~~l~~s~d~~~~~l~s~-------- 474 (1131)
.+. ++||+++++.+ | ....++++|+.+++.+.-...-.+.. .....++|..++. ++++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNEIT 210 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTCBC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCE--EEEEeCCCCCCcC
Confidence 344 88999987765 2 22479999999987553211100000 0124458874444 44432
Q ss_pred --cCCCcEEEEeC-CC--ceeEEecCCccCeE-EEeecccCCcc---EEEEEecC---CeEEEEeCCCCce-eEEecCCC
Q 001178 475 --GDDKLIRVWDL-SG--RKLFQFEGHEAPVY-SVCPHQKENIH---FIFSTAVD---GKIKAWLYDNVGS-RVDYDAPG 541 (1131)
Q Consensus 475 --s~d~~i~iwd~-~~--~~~~~~~~h~~~v~-~~~~~~~~~~~---~l~s~s~d---g~i~~wd~~~~~~-~~~~~~~~ 541 (1131)
+....|+.|.. +. .-...+.+....+. +.....++... .+++.+.+ ..+.+.+.+.... ...+....
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 290 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPS 290 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCT
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCC
Confidence 12346777762 11 11223333333332 22222333222 34444322 3455556543222 23333332
Q ss_pred ceEEEEEEccCCCEEEEEeec------CCCCceEEEEeCCCCe-------eeEE-EecccCCceEEEEEeCCCCEEEEEE
Q 001178 542 LWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNESEGA-------LKRT-YIGFRKKSAGVVQFDTTRNRILAAG 607 (1131)
Q Consensus 542 ~~v~~~~~s~~g~~l~~~~~~------~~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~ 607 (1131)
.. .+....++.+++....+ .-..+.|...++.++. ..+. +.......+..+.+..+ ..+++..
T Consensus 291 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 291 DA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp TC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred cc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence 21 12334456555533211 0136778888887642 2222 43334445667777764 5666666
Q ss_pred cCCc--EEEEEcCCCe-EEEE-EeccCCCCCcceEEEcCCCCEE-EEEEC---CCcEEEEecC
Q 001178 608 EDNQ--IKFWDMDNVN-MLTS-TEAEGGLPSLPRLRFNKEGNLL-VVTTA---DQGIKILANA 662 (1131)
Q Consensus 608 ~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~i~~v~~sp~~~~l-~~~~~---dg~i~iw~~~ 662 (1131)
.++. |+++++.++. .... +..... ..+.....++++..+ ++.+. -+.+..++..
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6664 6677776664 2222 332221 235555555665433 33332 2455555543
No 358
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=83.42 E-value=0.77 Score=41.33 Aligned_cols=57 Identities=12% Similarity=0.203 Sum_probs=43.0
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccc
Q 001178 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFR 125 (1131)
Q Consensus 67 ~~~~~~~~~i~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~ 125 (1131)
++.. ++|.|+-+.||||+..|..++|..++.+--.-+... .+.+++|+.+....++.
T Consensus 29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~ 85 (138)
T 2j4b_A 29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIH 85 (138)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHh
Confidence 4444 999999999999999999999999998655444444 67777777766555444
No 359
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=82.70 E-value=56 Score=35.10 Aligned_cols=155 Identities=9% Similarity=0.127 Sum_probs=88.0
Q ss_pred eEEEEECCCc--eeEEEEeCC------CCCeeEEEEe---CC---CCcEEEEEe-CCCcEEEEEeecceeEEeecccccC
Q 001178 855 KVSLFNMMNF--KVMTTFMSP------PPASTFLAFH---PQ---DNNIIAIGM-EDSTIQIYNVRVDEVKTKLKGHQKH 919 (1131)
Q Consensus 855 ~i~vwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---~~~~la~g~-~dg~I~iwd~~~~~~~~~~~~h~~~ 919 (1131)
+|.+||+.+. +.++++.-+ ......+++. |. ++.++..+. ..+.|.|||+.+++.-..+ |..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~--~~~- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT--HPT- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE--CGG-
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc--cCC-
Confidence 5778888888 888776532 2346777777 21 133444443 4677999999998876655 321
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCC----CcEEEEEeCCeEEEEeCCC
Q 001178 920 ITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD----QVRLLVNHETQLAIYDGSK 995 (1131)
Q Consensus 920 V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d----~~~l~~~~d~~i~vwd~~~ 995 (1131)
|.|+.....+. +|.-.-| ...+..++++|+ ++.|....=..-++|.+.+
T Consensus 201 -----~~pd~~~~~~i--~G~~~~~--------------------~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T 253 (381)
T 3q6k_A 201 -----FKAERPTKFDY--GGKEYEF--------------------KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNT 253 (381)
T ss_dssp -----GSCCSCEEEEE--TTEEEEE--------------------CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEH
T ss_pred -----CccccCcceEE--CCEEeEe--------------------ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEH
Confidence 34542121111 2221111 056788899998 7777775433334444332
Q ss_pred -----c---ccceeeecCCCCCCCeEEEEEc-cCCCEEEEEecCCcEEEEECCC
Q 001178 996 -----M---ECIRQWVPQDVLSSPISSAAYS-CNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 996 -----~---~~~~~~~~~~~~~~~v~~i~~s-~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
. ..++. .+..+..+.-..+++. .+|.+.++--+.+.|..|+..+
T Consensus 254 ~~L~~~~~~~~v~~-~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 254 KELKQKGGKLNPEL-LGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp HHHSSTTCCCCCEE-EEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred HHhhCcchhhceEE-eeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 1 11222 1221112334456675 5676666666789999999875
No 360
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=81.25 E-value=0.82 Score=41.63 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=36.8
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcc
Q 001178 66 NRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 121 (1131)
Q Consensus 66 ~~~~~~~~~~i~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1131)
.++.. ++|.|+-+.||||+..+ .++|..++.+--.-+.....+.+++|+.+...
T Consensus 30 ~EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p 83 (148)
T 2j49_A 30 PELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSI 83 (148)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSH
T ss_pred HHHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCH
Confidence 34455 99999999999999999 99999999754333322223444455444443
No 361
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=77.70 E-value=93 Score=34.59 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=60.8
Q ss_pred CeeEEEecCCCC--EEEEEeCCeEEEEECCCce---eEEEEe---C------CCCCeeEEEEeCC---CCcEEEEEeCC-
Q 001178 835 VVPCVALSKNDS--YVMSAGGGKVSLFNMMNFK---VMTTFM---S------PPPASTFLAFHPQ---DNNIIAIGMED- 896 (1131)
Q Consensus 835 ~i~~l~~s~dg~--~la~~~dg~i~vwd~~~~~---~~~~~~---~------~~~~i~~l~~s~~---~~~~la~g~~d- 896 (1131)
..+.|+|.|||. ++++-..|.|++++..... .+..+. . .......|+|+|+ ++.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999996 6666558999999754321 222221 1 1346788999993 24444443321
Q ss_pred -----------CcEEEEEeec----------ceeEEeec--ccccCeeEEEEccCCCEEEEEeCCC
Q 001178 897 -----------STIQIYNVRV----------DEVKTKLK--GHQKHITGLAFSTNLNILVSSGSDA 939 (1131)
Q Consensus 897 -----------g~I~iwd~~~----------~~~~~~~~--~h~~~V~~l~~s~dg~~l~s~~~Dg 939 (1131)
..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1344455432 12333322 1112357899999999888776543
No 362
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.30 E-value=1.6e+02 Score=36.46 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=35.7
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCC
Q 001178 1010 SPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 1010 ~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 1050 (1131)
..+.+++..++..++++-+.|+++|+|++.+++++......
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 46778888889999999999999999999999988877643
No 363
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=72.93 E-value=1.1e+02 Score=33.09 Aligned_cols=237 Identities=6% Similarity=0.008 Sum_probs=107.5
Q ss_pred CCCEEEEEEcC--CCCEEEEEeCCC--eEEEEEe-cCCCccceeee---eec--------CcCCeeEEEEecC--CCceE
Q 001178 409 SISVSRVAWSP--DGNFIGVAFTKH--LIHLYTY-QGSNDLCQSLE---IDA--------HVGGVNDLAFSYP--NKQLC 470 (1131)
Q Consensus 409 ~~~V~~~~~sp--dg~~las~~~d~--~i~vwd~-~~~~~~~~~~~---~~~--------h~~~V~~l~~s~d--~~~~~ 470 (1131)
...|.+|++.| ++..+|.+ ..+ --.||-. +.++....... +.. +...|.++++.|. .. .
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~--~ 130 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG--T 130 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--C
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--E
Confidence 35699999999 55555544 333 0123333 33332221110 111 1125788999873 33 2
Q ss_pred EEEEcCCCcEEEEeCCCceeEEecC-------------------CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC
Q 001178 471 IVTCGDDKLIRVWDLSGRKLFQFEG-------------------HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV 531 (1131)
Q Consensus 471 l~s~s~d~~i~iwd~~~~~~~~~~~-------------------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 531 (1131)
+..++..+.|...+..|+.-..+.. ....+.++.+.+...+ .++.+..++.|... ...
T Consensus 131 l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~-~l~vg~~~ggl~~s--~Dg 207 (394)
T 3b7f_A 131 WYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPK-HLYIGMSSGGVFES--TDA 207 (394)
T ss_dssp EEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTT-CEEEEEETBEEEEE--SST
T ss_pred EEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCC-EEEEEECCCCEEEE--CCC
Confidence 4444445556555434433222211 1234778888664333 34445444444332 222
Q ss_pred ceeEE-ecC--C-----------CceEEEEEEccC-CCEEEEEeecCCCCceEEEEeCCCCeeeEEEec-ccC---CceE
Q 001178 532 GSRVD-YDA--P-----------GLWCTTMLYSAD-GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG-FRK---KSAG 592 (1131)
Q Consensus 532 ~~~~~-~~~--~-----------~~~v~~~~~s~~-g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~---~~v~ 592 (1131)
..... +.. . ...+.++.+.|+ ...+..+. .+.|+..+- .++....+.. ... ..+.
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-----~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~ 281 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-----HCGIYRMDR-REGVWKRIGDAMPREVGDIGF 281 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-----TTEEEEEET-TTTEEECGGGGSCTTTCSCEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-----CCeEEEeCC-CCCcceECCCCCCCCCccceE
Confidence 22221 110 0 134889999986 35555554 333554442 2322222211 111 2345
Q ss_pred EEEEeCC-CCEEEEEEc-----------CCcEEEEEcCC-CeEEEEEec--cCCC--C--CcceEEEcCC-CCEEEEEEC
Q 001178 593 VVQFDTT-RNRILAAGE-----------DNQIKFWDMDN-VNMLTSTEA--EGGL--P--SLPRLRFNKE-GNLLVVTTA 652 (1131)
Q Consensus 593 ~~~~s~~-~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~--~~~~--~--~i~~v~~sp~-~~~l~~~~~ 652 (1131)
.+.++|. ...++++.. ++...+|.... ++....+.. .... . ....++++|. ...|+.++.
T Consensus 282 ~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~ 361 (394)
T 3b7f_A 282 PIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTT 361 (394)
T ss_dssp EEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECT
T ss_pred EEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeC
Confidence 6777763 345555532 23344555443 343333321 1100 0 1135788874 344666665
Q ss_pred CCcEE
Q 001178 653 DQGIK 657 (1131)
Q Consensus 653 dg~i~ 657 (1131)
++.|.
T Consensus 362 ~g~l~ 366 (394)
T 3b7f_A 362 GGEIW 366 (394)
T ss_dssp TSCEE
T ss_pred CCeEE
Confidence 55543
No 364
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=72.42 E-value=1.1e+02 Score=33.01 Aligned_cols=242 Identities=10% Similarity=0.080 Sum_probs=117.3
Q ss_pred CCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeE
Q 001178 778 SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKV 856 (1131)
Q Consensus 778 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i 856 (1131)
.....++...+|.+..|=.+...+.-.+.......+.... ......+..++++......+.-. +|.|
T Consensus 61 G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~------------~~~~~~~~~v~i~~G~~h~~al~~~G~v 128 (389)
T 3kci_A 61 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLE------------SIQHVFIKKVAVNSGGKHCLALSSEGEV 128 (389)
T ss_dssp ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECG------------GGTTSCEEEEEECTTCSEEEEEETTSCE
T ss_pred CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcc------------cccCCceeEEEECcCCCeEEEEcCCCCE
Confidence 3455666777888888865443222222111111111100 01122344455555554444444 7888
Q ss_pred EEEECCCc-----------eeEEEEeC-CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc-e----------eEEee
Q 001178 857 SLFNMMNF-----------KVMTTFMS-PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-E----------VKTKL 913 (1131)
Q Consensus 857 ~vwd~~~~-----------~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~-~----------~~~~~ 913 (1131)
..|-.... .....+.. ....|..++. +....+.-..||.|+.|-.... + ....+
T Consensus 129 ~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v 205 (389)
T 3kci_A 129 YSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 205 (389)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEEC
T ss_pred EEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEe
Confidence 88854321 11111221 1225666665 4456666778999999965321 1 01111
Q ss_pred cc-cccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee-------eeeeeecCCCCCCCCceEEEEcCCCcEEEEEeC
Q 001178 914 KG-HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR-------KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHE 985 (1131)
Q Consensus 914 ~~-h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~-------~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d 985 (1131)
.. ....|..++........+....||.|+.|-....... ...+...... ....+..++.-.. ..++...+
T Consensus 206 ~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~-~~~~v~~v~~G~~-hs~alt~~ 283 (389)
T 3kci_A 206 EALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGVVKVECGSQ-FSVALTKS 283 (389)
T ss_dssp GGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG-TTSCEEEEEEETT-EEEEEETT
T ss_pred cccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc-CCCcEEEEeCCCC-EEEEEeCC
Confidence 11 2235667766543356666778999999975432110 0111111110 1123445444332 23445678
Q ss_pred CeEEEEeCCCcccc-----------eeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 001178 986 TQLAIYDGSKMECI-----------RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 986 ~~i~vwd~~~~~~~-----------~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
+.|+.|-......+ ..+... ....|..++.. ....++...||.|+.|-...
T Consensus 284 G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l--~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 284 GAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL--QGKKVIAIATG--SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp SCEEEEECCGGGTTCSSSCCCEEEEEECGGG--TTCCEEEEEEC--SSEEEEEETTCCEEEEECCT
T ss_pred CeEEEEeCCCCCCCCCCCCccccCCeEeccC--CCCCEEEEEec--cCeEEEECCCCCEEEeeCCC
Confidence 88998876431111 111111 02456666654 33444456899999997653
No 365
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=68.76 E-value=1.2e+02 Score=31.83 Aligned_cols=208 Identities=9% Similarity=0.046 Sum_probs=112.6
Q ss_pred ccceEEEEeecCCceEEEeeecceeeEE---eecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC
Q 001178 767 ASKVARLLYTNSGIGILALWSNGVQKLW---KWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK 843 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw---~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~ 843 (1131)
...+..+........++..++.|.+... ++....... .|..+...+.-.....|..+..-+
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~----------------~G~~i~~~l~l~~~e~i~~~~~~~ 104 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTA----------------RGQHVANLLAFQPEERIAQVIQIR 104 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSS----------------CCEEHHHHTTCCTTCCEEEEEEES
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccC----------------CCEEHHHccCCCCCCEEEEEEEec
Confidence 3455556666666777777777766433 222211111 122111111112345555554333
Q ss_pred ---CCCEEEEEe-CCeEEEEECCCceeE-------EEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEee--cc---
Q 001178 844 ---NDSYVMSAG-GGKVSLFNMMNFKVM-------TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR--VD--- 907 (1131)
Q Consensus 844 ---dg~~la~~~-dg~i~vwd~~~~~~~-------~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~--~~--- 907 (1131)
+..+++..+ .|.++--.+...... ..+.. ...+..+.... ....|+..+..|.+..+... .-
T Consensus 105 ~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~ 182 (327)
T 3uc1_A 105 GYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPM 182 (327)
T ss_dssp STTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCC
T ss_pred cCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcC
Confidence 466777777 899998887653321 12332 34566665555 45567778899998888776 21
Q ss_pred ------eeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceee-----eeeeecCCCCCCCCceEEEE-cC
Q 001178 908 ------EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK-----SIAIQLPAGKLPVGETRVQF-HS 975 (1131)
Q Consensus 908 ------~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~-----~~~~~~~~~~~~~~v~~v~~-s~ 975 (1131)
.....+. ....|.++...+++..|+.++..|.++.-.+....... ...+.... . ...+..+.. ..
T Consensus 183 gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~-~-~d~lv~~~~~~~ 259 (327)
T 3uc1_A 183 GRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDR-R-RGRLVGALIVDD 259 (327)
T ss_dssp CTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCT-T-TCSEEEEEEECT
T ss_pred CcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecC-C-CCeEEEEEEeCC
Confidence 1111232 24557777776677789999999999988776533211 11111111 0 123443333 34
Q ss_pred CCcEEEEEeCCeEEEEeCCC
Q 001178 976 DQVRLLVNHETQLAIYDGSK 995 (1131)
Q Consensus 976 d~~~l~~~~d~~i~vwd~~~ 995 (1131)
+...++++.+|.+.-++...
T Consensus 260 ~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 260 DSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TCEEEEEEGGGCEEEEEGGG
T ss_pred CccEEEEcCCCeEEEEehhh
Confidence 45566667777777776543
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.56 E-value=53 Score=40.69 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=33.0
Q ss_pred CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001178 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAI 957 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~ 957 (1131)
.+.+++..++..++++.+.|+++|+|++.++++.....+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 467788888889999999999999999999887665443
No 367
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=64.15 E-value=1.4e+02 Score=30.96 Aligned_cols=211 Identities=11% Similarity=0.094 Sum_probs=108.7
Q ss_pred ccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEec---C
Q 001178 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS---K 843 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s---~ 843 (1131)
...+..+........++..++.|.+.-+.... ....+.. ..|..+...+.-.....|.++..- .
T Consensus 41 ~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~e--lp~~~~~-----------a~G~~i~~~l~l~~~e~i~~~~~~~~~~ 107 (307)
T 1zi0_A 41 EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ--LPEATRG-----------ARGRPIVNLLPLEQDERITAILPVTEFE 107 (307)
T ss_dssp -CCEEEEEEEETTCEEEEEETTSEEEEEEGGG--SCCCCSS-----------SCCEEGGGTSCCCTTCCEEEEEEESCCC
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEhhH--CcCCCCC-----------CCCeEhhhccCCCCCCEEEEEEEeccCC
Confidence 34555566666677788888888765443321 1111100 112211111111234455555432 3
Q ss_pred CCCEEEEEe-CCeEEEEECCCce-------eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc--------
Q 001178 844 NDSYVMSAG-GGKVSLFNMMNFK-------VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-------- 907 (1131)
Q Consensus 844 dg~~la~~~-dg~i~vwd~~~~~-------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~-------- 907 (1131)
++.+++..+ .|.++-..+.... ....+... ..+..+.... +...++..+.+|.+..+....-
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~-~~~~i~l~T~~G~~irf~~~~v~~~gr~a~ 185 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS-GEDEVMLFSAEGKVVRFKESSVRAMGCNTT 185 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC-CCCEEEEECCCCcEEEEEHHHcCccCCCCC
Confidence 455566665 8999888765322 11123333 5566665555 4556777888998888876431
Q ss_pred -eeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceee-----eeeeecCCCCCCCCceEEEE-cCCCcEE
Q 001178 908 -EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK-----SIAIQLPAGKLPVGETRVQF-HSDQVRL 980 (1131)
Q Consensus 908 -~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~-----~~~~~~~~~~~~~~v~~v~~-s~d~~~l 980 (1131)
.....+. ....|.++....++..|++.+..|.++-.+++...... ........ ....+..+.. .++...+
T Consensus 186 Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~--~~~~lv~~~~v~~~~~l~ 262 (307)
T 1zi0_A 186 GVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE--RNGLVVGAVQVDDCDQIM 262 (307)
T ss_dssp CEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCT--TTCSEEEEEEECTTCEEE
T ss_pred CeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecC--CCCeEEEEEEeCCCceEE
Confidence 1111232 23457777665566778889999999988875422110 11111111 1123333333 3445556
Q ss_pred EEEeCCeEEEEeCCC
Q 001178 981 LVNHETQLAIYDGSK 995 (1131)
Q Consensus 981 ~~~~d~~i~vwd~~~ 995 (1131)
+.+.+|.+.-+++..
T Consensus 263 ~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 263 MITDAGTLVRTRVSE 277 (307)
T ss_dssp EEESSCCEEEEEGGG
T ss_pred EEcCCCcEEEEeccc
Confidence 666677666666543
No 368
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=61.45 E-value=2.1e+02 Score=32.19 Aligned_cols=166 Identities=13% Similarity=0.078 Sum_probs=88.0
Q ss_pred CcCCeeEEEEecCCCceEEEEEcCCCc----------------------------EEEEe-CCCceeEEecCC--ccC--
Q 001178 453 HVGGVNDLAFSYPNKQLCIVTCGDDKL----------------------------IRVWD-LSGRKLFQFEGH--EAP-- 499 (1131)
Q Consensus 453 h~~~V~~l~~s~d~~~~~l~s~s~d~~----------------------------i~iwd-~~~~~~~~~~~h--~~~-- 499 (1131)
|...+....|.-||+. -++....+++ +.|+| .+|+.+.+..-. .+.
T Consensus 177 ~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~ 255 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVS 255 (591)
T ss_dssp TSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGG
T ss_pred ccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCccc
Confidence 5556777777777765 4555544444 78999 889888765421 111
Q ss_pred -------------eEEEeecccCCccEEEEEe---cCCeEEEEeCCCCceeE--EecCCC-----------ceEEEEEEc
Q 001178 500 -------------VYSVCPHQKENIHFIFSTA---VDGKIKAWLYDNVGSRV--DYDAPG-----------LWCTTMLYS 550 (1131)
Q Consensus 500 -------------v~~~~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~~~--~~~~~~-----------~~v~~~~~s 550 (1131)
..+++.. +.+...++.+- .-..+..||++..+... .+.... +......+.
T Consensus 256 ~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVD 334 (591)
T 2zux_A 256 DWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVD 334 (591)
T ss_dssp GGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCS
T ss_pred ccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCC
Confidence 1233322 11122333322 12347778876665432 332211 234444455
Q ss_pred cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCC--CEEEEEEcCC----cEEEEEcCCCeEEE
Q 001178 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR--NRILAAGEDN----QIKFWDMDNVNMLT 624 (1131)
Q Consensus 551 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg----~i~iwd~~~~~~~~ 624 (1131)
-||+-=+..+. .++| .+|+.+......|...+....|.|+. -.++.+.+++ -..+.|..+|+.+.
T Consensus 335 gDG~dEIv~Gs--------~~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw 405 (591)
T 2zux_A 335 GDGKDEIIFGS--------MAVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILW 405 (591)
T ss_dssp SSSSCEEEETT--------EEEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEE
T ss_pred CCCCceEEEee--------eEEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEE
Confidence 55544222211 1233 33555544433445577777888875 3566665541 35568999999988
Q ss_pred EEecc
Q 001178 625 STEAE 629 (1131)
Q Consensus 625 ~~~~~ 629 (1131)
.....
T Consensus 406 ~~~~~ 410 (591)
T 2zux_A 406 GVYAG 410 (591)
T ss_dssp EECCS
T ss_pred EcCCC
Confidence 77544
No 369
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=55.91 E-value=31 Score=39.05 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=44.4
Q ss_pred CCceEEEEcCCCcEEEEEeC-------------CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 001178 966 VGETRVQFHSDQVRLLVNHE-------------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 966 ~~v~~v~~s~d~~~l~~~~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
.....|.|+++|.+.++.+. ..+..++..+++....+.... ...++.++||||+++|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~--~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC--CccccCCEECCCCCEEEEEE
Confidence 45678999999987774321 257777777787665554321 46799999999999988876
No 370
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=55.30 E-value=53 Score=41.72 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=34.4
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCc
Q 001178 1011 PISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 1011 ~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
.+.+++..++..+|++-+.|+++|||++.+++++.......
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~ 279 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQ 279 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECCC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechhh
Confidence 45566677889999999999999999999999888876543
No 371
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=54.91 E-value=3.4e+02 Score=32.53 Aligned_cols=158 Identities=16% Similarity=0.141 Sum_probs=72.7
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC-CCEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GNFIG 425 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g~~la 425 (1131)
...|.+++|+|.....+.+++..+.|...+= .|+. |..-... ... -.-....|.+|+++|. ...+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~t--------W~~~~~~--~~~--~~~~~~~i~~ia~dp~~~~~i~ 80 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSK--------WIPLNDF--IEA--QDMNIMGTESIALDPNNPDRLY 80 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTE--------EEESCTT--CCG--GGGGGCSEEEEEEETTEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCC--------eeECccC--CCc--ccccCCceeEEEECCCCCCEEE
Confidence 4689999999975444666766676554442 2221 1110000 000 0001346999999984 34444
Q ss_pred EEeCCCe----EEEEEec-CCCccceeeeee----c---CcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEe
Q 001178 426 VAFTKHL----IHLYTYQ-GSNDLCQSLEID----A---HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF 493 (1131)
Q Consensus 426 s~~~d~~----i~vwd~~-~~~~~~~~~~~~----~---h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 493 (1131)
.+..+.. -.||.-. .|+.-... ... + ....+..+++.|.... .++.+...+.|..=+-.|+.-..+
T Consensus 81 ~~~g~~~~~~~~~v~~S~DgG~TW~~~-~~~~~~~~~~~~~~~~~~iav~p~~~~-~v~~g~~~~gl~~S~DgG~TW~~~ 158 (789)
T 1sqj_A 81 LAQGRYVGDEWAAFYVSEDRGQSFTIY-ESPFPMGANDMGRNNGERLAVNPFNSN-EVWMGTRTEGIWKSSDRAKTWTNV 158 (789)
T ss_dssp EEECSCTTSSCCEEEEESSTTSEEEEE-ECSSCCCTTSTTTTSCCCEEEETTEEE-EEEEECSSSCEEEESSTTSSCEEE
T ss_pred EEeCccCCCcccEEEEECCCCCcceec-cCCcccCccCCCccceeEEEEcCCCCC-EEEEEeccCCEEEECCCCcccCCC
Confidence 4432211 3344433 33322211 111 0 0113567888886543 455555344332211223322222
Q ss_pred cC------CccCeEEEeecccCCccEEEEEecC
Q 001178 494 EG------HEAPVYSVCPHQKENIHFIFSTAVD 520 (1131)
Q Consensus 494 ~~------h~~~v~~~~~~~~~~~~~l~s~s~d 520 (1131)
.. ....+..+.++|... ..++.+..+
T Consensus 159 ~~~~~~~~~~~~~~~i~~~p~~~-~~~~~~~~~ 190 (789)
T 1sqj_A 159 TSIPDAFTNGIGYTSVIFDPERN-GTIYASATA 190 (789)
T ss_dssp TTSCCCCSTTTCEEEEEECTTST-TCEEEEESS
T ss_pred ccCccccCCCCCeEEEEECCCCC-CEEEEEEcC
Confidence 21 124577888876544 345555544
No 372
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=54.50 E-value=26 Score=40.26 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=45.3
Q ss_pred CCceEEEEcCCCcEEEEEeC-------------CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 001178 966 VGETRVQFHSDQVRLLVNHE-------------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 966 ~~v~~v~~s~d~~~l~~~~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
...-.|+|+|.|.++++.+. ..+.+.+..+++..+-+..+. ...++.++|+||++.|++.-
T Consensus 476 ~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEEE
T ss_pred cCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEEE
Confidence 45578899999996665321 246667777777766665553 68999999999999988864
No 373
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=54.42 E-value=2.8e+02 Score=31.41 Aligned_cols=57 Identities=16% Similarity=0.100 Sum_probs=34.9
Q ss_pred CCCeeeEEEecccCCceEEEEEeCCC--CEEEEEEcC----CcEEEEEcCCCeEEEEEeccCC
Q 001178 575 SEGALKRTYIGFRKKSAGVVQFDTTR--NRILAAGED----NQIKFWDMDNVNMLTSTEAEGG 631 (1131)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~ 631 (1131)
.+|+.+......|...+....|.|+. -.++.+.++ .-..+.|..+|+.+........
T Consensus 354 ~dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D 416 (620)
T 2zuy_A 354 HDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTD 416 (620)
T ss_dssp TTSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSC
T ss_pred CCCCEEeecCCCCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCccc
Confidence 34555544443445467777788874 345555543 2567889999999887755433
No 374
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.23 E-value=44 Score=34.68 Aligned_cols=110 Identities=13% Similarity=0.189 Sum_probs=58.8
Q ss_pred HHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhc-ccccccCHHHHHHHH
Q 001178 38 MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDL-KVFSTFNEELFKEIT 116 (1131)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~Ell~~~~~~~a~~~l~~~l-~~~~~~~~~~~~~l~ 116 (1131)
...|++.|-+|+|-||.+.+..+ |.-++..+++++|+.+|.+-. .-++......-..|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl--------------------~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI--------------------ANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH--------------------HHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 68899999999999998877654 111223455556666655432 112222334444555
Q ss_pred HhhcccccccccccccCCCChhHHHHHHHHHHhhcccCcCccccccCCCCChHHHHHHHHHHHHHHHhhc
Q 001178 117 QLLTLENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLNWQHQLC 186 (1131)
Q Consensus 117 ~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~ 186 (1131)
.+|.-- .++ ..+....+++..|. +|.+.+|++ .+.| .+++..|++|=....
T Consensus 77 ~llvev-~~~----~~~~~~~~~~~rl~-~l~~~~p~~------------~~~r-~~fi~~ai~WS~~~g 127 (312)
T 2wpv_A 77 FYLLEV-YDL----AEVKVDDISVARLV-RLIAELDPS------------EPNL-KDVITGMNNWSIKFS 127 (312)
T ss_dssp HHHHHH-HHH----TTCCCSHHHHHHHH-HHHTTCCTT------------CTTH-HHHHHHHHHHHHHTS
T ss_pred HHHHHH-HHH----cCCCCCHHHHHHHH-HHHHHCCCC------------CchH-HHHHHHHHHHHhhcC
Confidence 554421 111 11111344555555 444444442 2233 778888888876643
No 375
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=51.78 E-value=2.1e+02 Score=29.06 Aligned_cols=196 Identities=9% Similarity=0.025 Sum_probs=101.5
Q ss_pred cEEEEEeCCCcEEE---EEeecceeEEeecccccCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC
Q 001178 888 NIIAIGMEDSTIQI---YNVRVDEVKTKLKGHQKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGK 963 (1131)
Q Consensus 888 ~~la~g~~dg~I~i---wd~~~~~~~~~~~~h~~~V~~l~~s~-dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~ 963 (1131)
..|+.-+.+|.++- |++..+.....+. ....|.++.... +..+++.++.+|.++-..+.... ....-.....-.
T Consensus 36 ~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lk 113 (276)
T 3no0_A 36 EGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLT 113 (276)
T ss_dssp SCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCC
T ss_pred CEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecC
Confidence 34444556666553 3333221111132 345566664422 56789999999999999876542 111011111111
Q ss_pred CCCCceEEEEcCCC-cEEEEEeCCeEEEEeCCCcccc-------eeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001178 964 LPVGETRVQFHSDQ-VRLLVNHETQLAIYDGSKMECI-------RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGV 1035 (1131)
Q Consensus 964 ~~~~v~~v~~s~d~-~~l~~~~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~v 1035 (1131)
....+..+...... ..++.+..|.+..++...-... ..+... ....|.++...+++.+++..+..|.++.
T Consensus 114 egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~--~~d~vv~~~~~~~~~~ll~~T~~G~~kr 191 (276)
T 3no0_A 114 EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE--KNDETSGLRIWNGEPYLLVITAKGRVKK 191 (276)
T ss_dssp TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC--TTCCEEEEEEESSCSEEEEEETTSCEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC--CCCEEEEEEEeCCCCEEEEEeCCCcEEE
Confidence 12455555444443 4555677888777765431111 111111 1456777766677778888999999999
Q ss_pred EECCCCceeeEec-CCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEE--EecCC
Q 001178 1036 FDADSLRLRCRIA-PSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV--IEPSE 1095 (1131)
Q Consensus 1036 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~i--W~~~~ 1095 (1131)
..+.......+-. +.... .....+. .+.... ++..++..+.+|.+.. +++++
T Consensus 192 ~~~~e~~~~~R~gkGv~~i-----~~~~~lv--~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 192 ISHEEIPKTNRGVKGTEVS-----GTKDTLV--DLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEGGGSCCCCTTCCCEECC-----CSSSCEE--EEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred eEHHHcccCCCCCcceEEE-----cCCCcEE--EEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 9876443322110 00000 0122222 121112 3356778888898877 77653
No 376
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=51.73 E-value=17 Score=32.03 Aligned_cols=89 Identities=19% Similarity=0.234 Sum_probs=50.0
Q ss_pred cchHHHHHHHHHhhhhccHH-HHHHHHHHhcCCCccHHHHHHHHhccCHHHHHHHhcccCCcC--CcccchhhHH-----
Q 001178 3 SLSRELVFLILQFLDEEKFK-ESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGFTKVD--DNRYSMKIFF----- 74 (1131)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~-~s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~--~~~~~~~~~~----- 74 (1131)
-..+++...|+..|.+.||- .+...+.++-|++.+ ++.+|++.++.+.+.- ...+..-++.
T Consensus 19 ~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~~ 87 (130)
T 2k9m_A 19 GKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEEI 87 (130)
T ss_dssp SHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhcC
Confidence 34567889999999999984 556666666665432 2355566666553221 1111111111
Q ss_pred -----HHHHHHHHH-HHhcCCHHH-HHHHHHhhcccc
Q 001178 75 -----EIRKQKYLE-ALDRHDRAK-AVEILVKDLKVF 104 (1131)
Q Consensus 75 -----~i~~~~~~E-ll~~~~~~~-a~~~l~~~l~~~ 104 (1131)
.|.+ .+|| +|..+++.. |+.++| .|.|-
T Consensus 88 ~~~a~~ii~-~~l~~~la~~~~~~~~~~~Ir-~L~P~ 122 (130)
T 2k9m_A 88 YPEEEEILK-KALRDLKRGKKLKPEIKGKLS-RLRLF 122 (130)
T ss_dssp CSTTHHHHH-HHHHHHHHSCCCCHHHHHHHH-TCCSC
T ss_pred chhHHHHHH-HhHHHHHHcCCHHHHHHHHHH-cCCCC
Confidence 1221 4677 777777444 666665 55554
No 377
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=47.04 E-value=67 Score=37.56 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=30.8
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecC
Q 001178 1011 PISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 1011 ~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
.|.++.+ +..+|++-+.|+.+|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555544 578999999999999999999998887776
No 378
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=45.07 E-value=2.8e+02 Score=28.67 Aligned_cols=201 Identities=14% Similarity=0.086 Sum_probs=109.7
Q ss_pred CCCceeccccCCCCcceeeecccCCce----eEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCC
Q 001178 728 IEKPRNLEDISDKTKPWELTEIVDPLQ----CRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNP 803 (1131)
Q Consensus 728 ~~~~~~~~~~d~~v~~w~~~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 803 (1131)
+...++..+.+|.++--.+........ ...+.+ .....+..+........++..++.|.++-+.... ...
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~l----ke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~--ip~ 80 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL----NDGDEIVIALCVNTHDYLFMISNEGKLYLINAYE--IKD 80 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCC----CTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGG--SCC
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceeccc----CCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHH--CCC
Confidence 345567777778887766655432211 111111 1345566666666677788888888876554322 111
Q ss_pred CCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC---CCCEEEEEe-CCeEEEEECCCcee-------EEEEeC
Q 001178 804 SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK---NDSYVMSAG-GGKVSLFNMMNFKV-------MTTFMS 872 (1131)
Q Consensus 804 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~---dg~~la~~~-dg~i~vwd~~~~~~-------~~~~~~ 872 (1131)
.+. . ..|..+...+.-.....|..+...+ +..+++..+ .|.++...+..... ...+..
T Consensus 81 ~~r-~----------~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~ 149 (312)
T 1suu_A 81 SSR-A----------SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND 149 (312)
T ss_dssp ------------------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT
T ss_pred CCc-c----------CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC
Confidence 000 0 1111111111112344555554332 345555555 79888887754322 222332
Q ss_pred CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc---------eeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEE
Q 001178 873 PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD---------EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIF 943 (1131)
Q Consensus 873 ~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~---------~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~l 943 (1131)
...+..+.... +...++..+.+|.+..+....- .....+.. ...|.++....++..+++.+..|..+.
T Consensus 150 -~d~lv~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr 226 (312)
T 1suu_A 150 -KDFVTSAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKR 226 (312)
T ss_dssp -TCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEE
T ss_pred -CCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEE
Confidence 45666666655 4566778899999988887541 12222332 345667666556677888999999999
Q ss_pred EEcCC
Q 001178 944 WNTDT 948 (1131)
Q Consensus 944 wd~~~ 948 (1131)
..++.
T Consensus 227 ~~~~e 231 (312)
T 1suu_A 227 LNMSK 231 (312)
T ss_dssp EEGGG
T ss_pred EEHHH
Confidence 88864
No 379
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=43.79 E-value=2.9e+02 Score=28.47 Aligned_cols=191 Identities=10% Similarity=0.087 Sum_probs=91.5
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccc------eeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe---C----
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQGSNDLC------QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD---L---- 485 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~------~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd---~---- 485 (1131)
|+..++++.+.+|.|+--.+..-+..+ ....+..+ ..+..+....... .++..+..|.++-.. +
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~--~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHD--HILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCC--EEEEEECCCEEEEEEhhHCcCCC
Confidence 355678888999999876654311100 00011111 2233333333333 244444455543332 1
Q ss_pred ---CCceeE---EecCCccCeEEEeecc-cCCccEEEEEecCCeEEEEeCCCCc-----ee--EEecCCCceEEEEEEcc
Q 001178 486 ---SGRKLF---QFEGHEAPVYSVCPHQ-KENIHFIFSTAVDGKIKAWLYDNVG-----SR--VDYDAPGLWCTTMLYSA 551 (1131)
Q Consensus 486 ---~~~~~~---~~~~h~~~v~~~~~~~-~~~~~~l~s~s~dg~i~~wd~~~~~-----~~--~~~~~~~~~v~~~~~s~ 551 (1131)
.|..+. .+. ....|.++.... ..+..+++..+.+|.++--.+.... .. ..+... ..+..+....
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC
Confidence 122221 122 233455554321 1344678899999999988764211 11 122223 3444444444
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCCC-------eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcC
Q 001178 552 DGSRLFSCGTSKEGDSHLVEWNESEG-------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1131)
Q Consensus 552 ~g~~l~~~~~~~~~~~~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1131)
+...++..+. .|.+..++...- .-++.+.-..+..+..+....++..+++.+..|..+-.++.
T Consensus 156 ~~~~i~l~T~----~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 156 GEDEVMLFSA----EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp TTCEEEEEET----TSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CCCEEEEECC----CCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 4445555554 677777765321 11111121223345555444455678888899988887763
No 380
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.52 E-value=2.7e+02 Score=35.16 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=31.7
Q ss_pred CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001178 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAI 957 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~ 957 (1131)
.+.+++..++..++++.+.|+++|+|++.++++.....+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 455666777889999999999999999999887665443
No 381
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=43.36 E-value=76 Score=33.20 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=58.1
Q ss_pred HHHHHHHHhccCH---HHHHHHhcccCCcCCcccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccccccCHHHHH
Q 001178 38 MKYFEEKALAGEW---DEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKD-LKVFSTFNEELFK 113 (1131)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~Ell~~~~~~~a~~~l~~~-l~~~~~~~~~~~~ 113 (1131)
+.+|++.|-+|+| -||.+.+..+ . .+ ++..+++++|+.+|.+- +.-++......-.
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi------~----~R----------y~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV------A----AR----------YSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH------H----HH----------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH------H----HH----------HHhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 6889999999999 8998877654 1 22 22344555555555442 1111122333444
Q ss_pred HHHHhhcccccccccccccCCCChhHHHHHHHHHHhhcccCcCccccccCCCCChHHHHHHHHHHHHHHHhhc
Q 001178 114 EITQLLTLENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLNWQHQLC 186 (1131)
Q Consensus 114 ~l~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~ 186 (1131)
.|+.+|.-- .++ .++....+++.+|.+-+. .++| -.+.| ..++..|++|=....
T Consensus 76 DL~~llvev-y~~----~~~~~~~~~~~rL~~L~~-~~~~------------~~p~r-~~fi~~ai~WS~~~g 129 (336)
T 3lpz_A 76 DLAVLLVDT-FRQ----AGQRVDGASRGKLLGCLR-LFQP------------GEPVR-KRFVKEMIDWSKKFG 129 (336)
T ss_dssp HHHHHHHHH-HHH----HTCCCCHHHHHHHHHHHT-TSCT------------TCHHH-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH-HHH----cCCCCCHHHHHHHHHHHH-hCCC------------CCcHH-HHHHHHHHHHHhhcC
Confidence 555554421 111 111112355555555444 3444 23444 778889998877643
No 382
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=42.59 E-value=3.4e+02 Score=28.89 Aligned_cols=147 Identities=11% Similarity=0.153 Sum_probs=74.6
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCC-------CccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE---eC--
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGS-------NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW---DL-- 485 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~-------~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw---d~-- 485 (1131)
-|+..++++.+.+|.|+--.+..- +.+ ....+. ....+..+....... .++..+..|.++-. ++
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~-~~~~lk-e~D~l~~~~~~~t~d--~ll~fT~~G~~~~~~~~eip~ 79 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGR-SAASTK-EEDFIDQLWLVNTHD--TLLTFTSSGKVFWLPVHQLPE 79 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCS-EEEECS-CCCCEEEEEEECTTC--EEEEEETTSEEEEEEGGGSCB
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCc-eecccC-CCCEEEEEEEecCCC--EEEEEeCCCeEEEEEHHHCcC
Confidence 467788999999999997665321 111 111222 233455555444444 34444445554433 31
Q ss_pred -----CCceeEE---ecCCccCeEEEeecc-cCCccEEEEEecCCeEEEEeCCCCce-----e--EEecCCCceEEEEEE
Q 001178 486 -----SGRKLFQ---FEGHEAPVYSVCPHQ-KENIHFIFSTAVDGKIKAWLYDNVGS-----R--VDYDAPGLWCTTMLY 549 (1131)
Q Consensus 486 -----~~~~~~~---~~~h~~~v~~~~~~~-~~~~~~l~s~s~dg~i~~wd~~~~~~-----~--~~~~~~~~~v~~~~~ 549 (1131)
.|..+.. +. ....|.++.... ..+..+|+.++..|.++-..+..... . ..+.. +..+..+..
T Consensus 80 ~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~ 157 (370)
T 3l6v_A 80 AGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVAL 157 (370)
T ss_dssp CCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEE
T ss_pred CCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEE
Confidence 1222221 22 234555554322 12346899999999999887543221 1 12222 333444444
Q ss_pred ccCCCEEEEEeecCCCCceEEEEeC
Q 001178 550 SADGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 550 s~~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
..+...++..+. .|.+..++.
T Consensus 158 ~~~~~~i~l~T~----~G~~irf~~ 178 (370)
T 3l6v_A 158 TDGDRDVLLFAS----NGKTVRFGE 178 (370)
T ss_dssp ECSCCEEEEEET----TSEEEEEEG
T ss_pred eCCCceEEEEeC----CCeEEEEEc
Confidence 444455555554 666666654
No 383
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=42.14 E-value=14 Score=29.69 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.8
Q ss_pred CCcchHHHHHHHHHhhhhc
Q 001178 1 MSSLSRELVFLILQFLDEE 19 (1131)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~ 19 (1131)
|+.++++++..|+|||++.
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 7888999999999999763
No 384
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=41.21 E-value=78 Score=36.36 Aligned_cols=64 Identities=9% Similarity=0.185 Sum_probs=47.7
Q ss_pred eEEEEEEccCCCEEEEEeecC--------CCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEE
Q 001178 543 WCTTMLYSADGSRLFSCGTSK--------EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA 606 (1131)
Q Consensus 543 ~v~~~~~s~~g~~l~~~~~~~--------~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 606 (1131)
..-.|+|+|.|++++.--.+. .+...+.+.+..++++.+.+.+..+..++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 346789999999665542110 1234677778888998888888888899999999999877664
No 385
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=41.01 E-value=3e+02 Score=27.83 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=91.0
Q ss_pred cceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC-CCC
Q 001178 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK-NDS 846 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~-dg~ 846 (1131)
..+..+........++..++.|.++--.+ +++..+..... + .....|..+.... +..
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~-------------------~~lp~~~~~~l-l--~~~e~i~~v~~~~~~~~ 81 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAG-------------------SQALQGSKVSL-K--SREEKIVGAFIREKFGN 81 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECS-------------------HHHHTSEECCC-S--STTCCEEEEEEGGGSCS
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEh-------------------hhCccCccccc-C--CCCCEEEEEECCcCCCC
Confidence 45555555566677777788777643211 11110000001 1 2355565554421 456
Q ss_pred EEEEEe-CCeEEEEECCCce------eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec---------ceeE
Q 001178 847 YVMSAG-GGKVSLFNMMNFK------VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV---------DEVK 910 (1131)
Q Consensus 847 ~la~~~-dg~i~vwd~~~~~------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~---------~~~~ 910 (1131)
+++..+ .|.++-..+.... ....++ ....+..+.... +...++..+..|.+..+.... |...
T Consensus 82 ~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~ 159 (276)
T 3no0_A 82 RLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGVQG 159 (276)
T ss_dssp EEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC
T ss_pred EEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEE
Confidence 777777 8999998876542 111222 234566666655 555777888999988887643 1111
Q ss_pred EeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001178 911 TKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 911 ~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~ 948 (1131)
..+.. ...|.++...+++..++..+..|.++...++.
T Consensus 160 i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 160 IKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp CCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred EccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 22332 35577766666677899999999999888765
No 386
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=39.40 E-value=1.2e+02 Score=29.00 Aligned_cols=101 Identities=8% Similarity=0.103 Sum_probs=62.1
Q ss_pred cchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHH-HHHHHhhcccccccccccccCCCChhHHHHHHHH
Q 001178 68 YSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELF-KEITQLLTLENFRENEQLSKYGDTRSARTIMLVE 146 (1131)
Q Consensus 68 ~~~~~~~~i~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~-~~l~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~ 146 (1131)
+...+.-+|.+|..+=.++++++.+|..+|++.+..-. .++.+ ..|..++.+.+. .|..+.++. =..+.+.
T Consensus 108 l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~--s~~kLr~kL~~II~~Kd~-~H~~lqnFS-----y~~~~~k 179 (235)
T 3bu8_A 108 VVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDP--TTQKLRNDLLNIIREKNL-AHPVIQNFS-----YETFQQK 179 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCG--GGHHHHHHHHHHHHHTCT-TSHHHHTCC-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCC--CchHHHHHHHHHHhccCc-ccHHHHhcc-----HHHHHHH
Confidence 34458889999999999999999999999998877432 23333 466666666543 334333332 2345555
Q ss_pred HHhhcccCcCccccccCCCCChHHHHHHHHHHHHHHHhhccC
Q 001178 147 LKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLNWQHQLCKN 188 (1131)
Q Consensus 147 l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~ 188 (1131)
+..++...+- .+++ -||..|.+-+.+.|.+
T Consensus 180 i~~fve~~~~---------~a~~---FLL~~A~Kv~ks~~~~ 209 (235)
T 3bu8_A 180 MLRFLESHLD---------DAEP---YLLTMAKKALKSESAA 209 (235)
T ss_dssp HHHHHHTTSC---------CCCC---HHHHHHHHHTTTC---
T ss_pred HHHHHHHHhc---------ccch---HHHHHHHHHHhhcccc
Confidence 5555433111 2222 4788888888887754
No 387
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=38.29 E-value=4e+02 Score=28.48 Aligned_cols=204 Identities=7% Similarity=0.033 Sum_probs=104.7
Q ss_pred CeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc-----------eeEEeeccc-ccCeeEEEEccCCCEEEEEeCCCcEEE
Q 001178 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-----------EVKTKLKGH-QKHITGLAFSTNLNILVSSGSDAQLIF 943 (1131)
Q Consensus 876 ~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~-----------~~~~~~~~h-~~~V~~l~~s~dg~~l~s~~~Dg~v~l 943 (1131)
.+..++++. +....+.-+.||.|+.|-.... .....+..- ...|..++.. ....+....||.|+.
T Consensus 106 ~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred ceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence 456677777 6667777788999999965321 011112211 1256666654 445566678999999
Q ss_pred EEcCCCce------e-eeeeeecCCCCCCCCceEEEEcC-CCcEEEEEeCCeEEEEeCCCcccc-----------eeeec
Q 001178 944 WNTDTWEK------R-KSIAIQLPAGKLPVGETRVQFHS-DQVRLLVNHETQLAIYDGSKMECI-----------RQWVP 1004 (1131)
Q Consensus 944 wd~~~~~~------~-~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~d~~i~vwd~~~~~~~-----------~~~~~ 1004 (1131)
|-...... . ...+.... ......+..++... +...++...++.|+.|-......+ ..+..
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~-~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 261 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVE-ALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS 261 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECG-GGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGG
T ss_pred eCCCCCCCcCCCCCcccccceEec-ccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecc
Confidence 97543111 0 01111111 11113566666654 345566678999999975432111 11111
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcee------eEecCCccccCCCCCCCCccccEEEEEcCCCCCe
Q 001178 1005 QDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLR------CRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQ 1078 (1131)
Q Consensus 1005 ~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~ 1078 (1131)
. ....|..++...+ +.++-..||.|+.|-....-.+ ....+.. .... .. ...+.|+- ....
T Consensus 262 ~--~~~~v~~v~~G~~--hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~-v~~l---~~--~~v~~ia~---G~~h 328 (389)
T 3kci_A 262 L--TGLGVVKVECGSQ--FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQ-VQGL---QG--KKVIAIAT---GSLH 328 (389)
T ss_dssp G--TTSCEEEEEEETT--EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEE-CGGG---TT--CCEEEEEE---CSSE
T ss_pred c--CCCcEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeE-eccC---CC--CCEEEEEe---ccCe
Confidence 1 0234666665433 3444457999999975431111 0000000 0000 01 11223432 3456
Q ss_pred EEEEecCCcEEEEecCCC
Q 001178 1079 LAVGLTDGSVKVIEPSET 1096 (1131)
Q Consensus 1079 l~s~~~Dg~v~iW~~~~~ 1096 (1131)
.+....||.|..|=....
T Consensus 329 ~~al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 329 CVCCTEDGEVYTWGDNDE 346 (389)
T ss_dssp EEEEETTCCEEEEECCTT
T ss_pred EEEECCCCCEEEeeCCCC
Confidence 666788999999987643
No 388
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=38.11 E-value=4.1e+02 Score=28.59 Aligned_cols=199 Identities=12% Similarity=0.038 Sum_probs=97.3
Q ss_pred CeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc-e----------eEEeeccc-ccCeeEEEEccCCCEEEEEeCCCcEEE
Q 001178 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-E----------VKTKLKGH-QKHITGLAFSTNLNILVSSGSDAQLIF 943 (1131)
Q Consensus 876 ~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~-~----------~~~~~~~h-~~~V~~l~~s~dg~~l~s~~~Dg~v~l 943 (1131)
.|..++. +....+.-+.||.|+.|-.... + ....+..- ...|..++.. ..+.+....||.|+.
T Consensus 122 ~i~~ia~---G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~~ 196 (406)
T 4d9s_A 122 RIKQIAC---GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLYG 196 (406)
T ss_dssp CEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CEEEEEE---ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC--CCeEEEEeCCCCEEE
Confidence 5666665 4455666778999999975421 1 11112211 2246666654 345566678999999
Q ss_pred EEcCCCcee-------eeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccc-----------eeeecC
Q 001178 944 WNTDTWEKR-------KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECI-----------RQWVPQ 1005 (1131)
Q Consensus 944 wd~~~~~~~-------~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~-----------~~~~~~ 1005 (1131)
|-....... ...+.... ......+..++... ...++...++.++.|-......+ ..+...
T Consensus 197 wG~n~~GqlG~g~~~~~~~p~~v~-~~~~~~i~~va~G~-~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~ 274 (406)
T 4d9s_A 197 WGWGRYGNLGLGDRTDRLVPERVT-STGGEKMSMVACGW-RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEAL 274 (406)
T ss_dssp EECCTTSTTCSSSSCCEEEEEECC-CSTTCCEEEEEECS-SEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGG
T ss_pred eeCCCCCCCCCCCCCCcCccEEec-ccCCceEEEEEECC-CcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEeccc
Confidence 975432110 01111111 11113444444432 23344567888888865432111 111111
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcee------eEecCCccccCCCCCCCCccccEEEEEcCCCCCeE
Q 001178 1006 DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLR------CRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQL 1079 (1131)
Q Consensus 1006 ~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l 1079 (1131)
....|..++.. ....++-..||.|+.|-....-.+ ....+.. .. .......+.|+- .....
T Consensus 275 --~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~-v~-----~~~~~~v~~va~---G~~hs 341 (406)
T 4d9s_A 275 --SNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQ-VR-----FPDDQKVVQVSC---GWRHT 341 (406)
T ss_dssp --TTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEE-EC-----CGGGCCEEEEEE---CSSEE
T ss_pred --CCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEE-Ee-----ccCCCcEEEEEe---CCCeE
Confidence 13346666543 334444557999999975432111 0000000 00 000012223332 34566
Q ss_pred EEEecCCcEEEEecC
Q 001178 1080 AVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1080 ~s~~~Dg~v~iW~~~ 1094 (1131)
+.-..||.|+.|=-.
T Consensus 342 ~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 342 LAVTERNNVFAWGRG 356 (406)
T ss_dssp EEEETTSCEEEEECC
T ss_pred EEEeCCCCEEEecCC
Confidence 667789999999864
No 389
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=37.72 E-value=4.2e+02 Score=28.62 Aligned_cols=157 Identities=9% Similarity=-0.058 Sum_probs=77.0
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCCcEEEEEe--e-ccee---------EEeecccccCeeEEEEccCCCEEEEEeCCCcEE
Q 001178 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNV--R-VDEV---------KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLI 942 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~~dg~I~iwd~--~-~~~~---------~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~ 942 (1131)
..|..++. +....+.-+.||.|+.|-. . .+++ ..........|..|+.. ..+.+....||.|+
T Consensus 127 ~~i~~va~---G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~ 201 (423)
T 3mvd_K 127 GKALCISA---GDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVF 201 (423)
T ss_dssp SCEEEEEE---CSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCEEEEEc---CcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEE
Confidence 35666665 3445556688999999975 2 2221 11111122356666654 34555667899999
Q ss_pred EEEcCCCceeee------------------eeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCccccee---
Q 001178 943 FWNTDTWEKRKS------------------IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQ--- 1001 (1131)
Q Consensus 943 lwd~~~~~~~~~------------------~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~--- 1001 (1131)
.|-.....+... .+..... .....+..++......+++...++.++.|-......+..
T Consensus 202 ~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~-~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~ 280 (423)
T 3mvd_K 202 TVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLII-TRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETK 280 (423)
T ss_dssp EEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECC-TTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCT
T ss_pred EeeCCcCCccCCCcccccccccccccccccCCeEEee-cCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCC
Confidence 997543211100 0000000 011234455444332222224678888886543111100
Q ss_pred -----eecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 1002 -----WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 1002 -----~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
+.+.......|..|+.. ..+.++-..||.|+.|-..
T Consensus 281 ~~~~~~~p~~~~~~~v~~ia~G--~~ht~alt~~G~v~~wG~n 321 (423)
T 3mvd_K 281 GKEFALTPIKTELKDIRHIAGG--QHHTVILTTDLKCSVVGRP 321 (423)
T ss_dssp TCSEEEEEEEECCCSEEEEEEC--SSEEEEEETTCCEEEEECC
T ss_pred CCceeeeeEEcCCCCeEEEEcc--cCeEEEEeCCCcEEEEECC
Confidence 00000002456666544 3344445579999999754
No 390
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=36.27 E-value=1.2e+02 Score=31.03 Aligned_cols=85 Identities=15% Similarity=0.026 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhhhhcc-HHHHHHHHHH--hcCCCc-c--HHHH--HHHHhccCHHHHHHHhcccCCcCCcccchhhHHHH
Q 001178 5 SRELVFLILQFLDEEK-FKESVHRLEQ--ESGFFF-N--MKYF--EEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEI 76 (1131)
Q Consensus 5 ~~e~~rli~q~L~~~g-~~~s~~~L~~--Esg~~~-~--~~~~--~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1131)
.-+.++++.+++...| +.++...|++ +.++.. + ...+ .-....|++++|+..+.+ +.. .. +.+.+
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~--~~-~~~~l 136 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDS--LE-CMAMT 136 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCS--HH-HHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCC--HH-HHHHH
Confidence 4457788888888887 7888888876 334322 2 2121 445578999999988887 111 11 21111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhh
Q 001178 77 RKQKYLEALDRHDRAKAVEILVKD 100 (1131)
Q Consensus 77 ~~~~~~Ell~~~~~~~a~~~l~~~ 100 (1131)
-+ =++..|+.++|+..+++-
T Consensus 137 -~~---~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 137 -VQ---ILLKLDRLDLARKELKKM 156 (291)
T ss_dssp -HH---HHHHTTCHHHHHHHHHHH
T ss_pred -HH---HHHHCCCHHHHHHHHHHH
Confidence 11 134567777887777764
No 391
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=36.22 E-value=1.2e+02 Score=34.40 Aligned_cols=65 Identities=9% Similarity=0.153 Sum_probs=46.5
Q ss_pred eEEEEEEccCCCEEEEEeec--------CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE
Q 001178 543 WCTTMLYSADGSRLFSCGTS--------KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1131)
Q Consensus 543 ~v~~~~~s~~g~~l~~~~~~--------~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 607 (1131)
....|.|.++|.+.+..-.+ ..+...++.++..++++.+.+.+.....++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 46789999999877743211 012337888888888887777655555789999999999887753
No 392
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=34.44 E-value=4.5e+02 Score=28.00 Aligned_cols=137 Identities=12% Similarity=0.122 Sum_probs=75.4
Q ss_pred cEEEEe-CCC--ceeEEecC------CccCeEEEeec-ccC----CccEEE-EEecCCeEEEEeCCCCceeEEec----C
Q 001178 479 LIRVWD-LSG--RKLFQFEG------HEAPVYSVCPH-QKE----NIHFIF-STAVDGKIKAWLYDNVGSRVDYD----A 539 (1131)
Q Consensus 479 ~i~iwd-~~~--~~~~~~~~------h~~~v~~~~~~-~~~----~~~~l~-s~s~dg~i~~wd~~~~~~~~~~~----~ 539 (1131)
.|.+|| .++ +.++++.- ....+..+.+. ..+ ++.+++ +-+..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 456677 555 56655432 23456777776 211 123433 44457789999998766544331 0
Q ss_pred C--------------CceEEEEEEccC----CCEEEEEeecCCCCceEEEEe---CCCC---eeeEEEecccC--CceEE
Q 001178 540 P--------------GLWCTTMLYSAD----GSRLFSCGTSKEGDSHLVEWN---ESEG---ALKRTYIGFRK--KSAGV 593 (1131)
Q Consensus 540 ~--------------~~~v~~~~~s~~----g~~l~~~~~~~~~~~~i~iwd---~~~~---~~~~~~~~~~~--~~v~~ 593 (1131)
. ...+..++++|+ ++.|.....+ ...++-.. ++.. ..++. .+... ..-..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls---s~~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS---AIKVYSVNTKELKQKGGKLNPEL-LGNRGKYNDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS---CSEEEEEEHHHHSSTTCCCCCEE-EEECCTTCCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC---CCcEEEEEHHHhhCcchhhceEE-eeecCCCCCcce
Confidence 0 125788999998 7888776542 11233222 1111 12222 22222 12334
Q ss_pred EEEe-CCCCEEEEEEcCCcEEEEEcCC
Q 001178 594 VQFD-TTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 594 ~~~s-~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
.++. .+|..+++--+.+.|..|+..+
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 5665 5666666777888999999875
No 393
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=33.76 E-value=34 Score=27.12 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHhcCCC
Q 001178 7 ELVFLILQFLDEEKFKESVHRLEQESGFF 35 (1131)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1131)
-+.-||-.||+=.||+-|+..++-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 36779999999999999999999999985
No 394
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=33.55 E-value=2e+02 Score=29.28 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=24.1
Q ss_pred HHHHHhhhhcc-HHHHHHHHHHhcCCCcc-HHHH-HHHHhccCHHHHHHHhccc
Q 001178 10 FLILQFLDEEK-FKESVHRLEQESGFFFN-MKYF-EEKALAGEWDEIEKYLSGF 60 (1131)
Q Consensus 10 rli~q~L~~~g-~~~s~~~L~~Esg~~~~-~~~~-~~~i~~g~w~~~~~~l~~~ 60 (1131)
.++.+.+-.+| |..+...++.++.-.+. +..+ .-....|++++|++.++.+
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~l 91 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDRE 91 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 34445444444 66666555443211111 1111 2233456677777777654
No 395
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=32.03 E-value=6e+02 Score=28.67 Aligned_cols=187 Identities=13% Similarity=0.049 Sum_probs=99.6
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEe-cCCccCeEEEeecccCCccEEEEEecCC----eEEEEeCCC
Q 001178 456 GVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF-EGHEAPVYSVCPHQKENIHFIFSTAVDG----KIKAWLYDN 530 (1131)
Q Consensus 456 ~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg----~i~~wd~~~ 530 (1131)
...-..+.-||+. -|+.|+. ++|-.|+.+... .+|...+....|.|+..|..++.+..++ -..+.|..+
T Consensus 327 ~~~vaDVDgDG~d-EIv~Gs~-----~iD~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~t 400 (591)
T 2zux_A 327 NLSIADVDGDGKD-EIIFGSM-----AVDHDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAAT 400 (591)
T ss_dssp CCEEECCSSSSSC-EEEETTE-----EECTTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTT
T ss_pred CCeeEeCCCCCCc-eEEEeee-----EECCCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCC
Confidence 3455566667775 5665552 567677777654 3788888888888877677777776652 344578888
Q ss_pred CceeEEecCC--CceEEEEEEccCCC--EEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCC-EEEE
Q 001178 531 VGSRVDYDAP--GLWCTTMLYSADGS--RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-RILA 605 (1131)
Q Consensus 531 ~~~~~~~~~~--~~~v~~~~~s~~g~--~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~ 605 (1131)
++.+...... .+......|.|+.. .+.+ . . .+++.. |+.+.... ....-..+.|..+.. .++-
T Consensus 401 G~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~-~-----~---~l~~~~-G~~i~~~~--p~~~N~~i~WdGDl~relld 468 (591)
T 2zux_A 401 GKILWGVYAGKDVGRGMAADIDPRYPGQEVWA-N-----G---SLYSAK-GVKIGSGV--PSSTNFGIWWDGDLLREQLD 468 (591)
T ss_dssp CCEEEEECCSSCCCCEEEECCCTTSSSCEEEE-T-----T---EEECTT-SCBCSSCC--CSCCSEEECCSSSSSCEEEE
T ss_pred CcEEEEcCCCCCCCceeEEecCCCCCceEEEe-c-----C---ceECCC-CCEecCCC--CCCcceeEEECCCCcHhhhC
Confidence 8887766543 22334444445422 1111 0 1 245543 44332210 111223466766663 3332
Q ss_pred EEcCCcEEEEEcCCCeEEEEEeccC-----CCCCcceEEE--cCCC-CEEEEEE-CCCcEEEEecCC
Q 001178 606 AGEDNQIKFWDMDNVNMLTSTEAEG-----GLPSLPRLRF--NKEG-NLLVVTT-ADQGIKILANAD 663 (1131)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~i~~v~~--sp~~-~~l~~~~-~dg~i~iw~~~~ 663 (1131)
.+.|.-|+...+.....+...+ ......++.. --|. .-++..+ .+..++||....
T Consensus 469 ---~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~ 532 (591)
T 2zux_A 469 ---SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTI 532 (591)
T ss_dssp ---TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCC
T ss_pred ---CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCC
Confidence 3478889988776444444332 0011222332 2222 2344444 455799997643
No 396
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=27.51 E-value=2.8e+02 Score=23.39 Aligned_cols=25 Identities=0% Similarity=0.025 Sum_probs=14.9
Q ss_pred eEEEEcCCCcEEEEEeCCeEEEEeCC
Q 001178 969 TRVQFHSDQVRLLVNHETQLAIYDGS 994 (1131)
Q Consensus 969 ~~v~~s~d~~~l~~~~d~~i~vwd~~ 994 (1131)
..+.+..+|.+++...++.+ +|...
T Consensus 59 ~~l~l~~dGNLVl~d~~~~~-iW~S~ 83 (113)
T 3mez_B 59 CFMRLGHSGELDITDDRLNT-VFVSN 83 (113)
T ss_dssp CEEEECTTSCEEEECTTSCE-EEECS
T ss_pred EEEEEeCCCcEEEECCCCCE-EEECC
Confidence 45677777777665444433 66644
No 397
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=27.48 E-value=6.7 Score=33.04 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCccHHHHHHHHhccCHHHHHHHhccc
Q 001178 24 SVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60 (1131)
Q Consensus 24 s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (1131)
.+..+-+|||+.+++.-+-..| +|+||++++.++++
T Consensus 37 ~~i~vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 37 RAIEKISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 3444556899999865555444 59999999888765
No 398
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=27.43 E-value=2.4e+02 Score=24.06 Aligned_cols=97 Identities=10% Similarity=0.033 Sum_probs=46.2
Q ss_pred hhhhccHHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHHHHHHHHHHHHhcCC
Q 001178 15 FLDEEKFKESVHRLEQESGFFFN-----MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHD 89 (1131)
Q Consensus 15 ~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~Ell~~~~ 89 (1131)
+++.--|.++...+++=-.+..+ ...=.-....|+|++|+..+.....+.... .. +.+. .- .=+...++
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~-a~~~--lg--~~~~~~~~ 96 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IK-GYIR--KA--ACLVAMRE 96 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHH--HH--HHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hH-HHHH--HH--HHHHHCCC
Confidence 44444577777766553332222 111123345678888877776553332111 11 1111 11 11244577
Q ss_pred HHHHHHHHHhhcccccccCHHHHHHHHHh
Q 001178 90 RAKAVEILVKDLKVFSTFNEELFKEITQL 118 (1131)
Q Consensus 90 ~~~a~~~l~~~l~~~~~~~~~~~~~l~~l 118 (1131)
+++|+..+++-+.-- ..+++-...|..+
T Consensus 97 ~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 124 (126)
T 4gco_A 97 WSKAQRAYEDALQVD-PSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-cCCHHHHHHHHHh
Confidence 888888877654311 1244444444444
No 399
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=26.91 E-value=40 Score=19.48 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=11.7
Q ss_pred hHHHHHHHHHhhhhc
Q 001178 5 SRELVFLILQFLDEE 19 (1131)
Q Consensus 5 ~~e~~rli~q~L~~~ 19 (1131)
-+||++||-||-++.
T Consensus 4 MkDvlql~qQy~qsh 18 (26)
T 1kdl_A 4 MKDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 368999999987654
No 400
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=25.91 E-value=2.9e+02 Score=22.98 Aligned_cols=90 Identities=8% Similarity=-0.062 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHHHHHHHH
Q 001178 7 ELVFLILQFLDEEKFKESVHRLEQESGFFFN-----MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1131)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1131)
....+-..++...-|.++...+++=.....+ ...-.-....|+|++|+.++.......... .. +.+.+-
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~-~~~~la---- 91 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IK-GYTRKA---- 91 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HH-HHHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hH-HHHHHH----
Confidence 3445555566666678888877775554332 122233456789999988887653322111 11 222111
Q ss_pred HHHHhcCCHHHHHHHHHhhcc
Q 001178 82 LEALDRHDRAKAVEILVKDLK 102 (1131)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~ 102 (1131)
.-+...++..+|+..+++-+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 112456888889888886543
No 401
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=25.30 E-value=2.8e+02 Score=32.43 Aligned_cols=37 Identities=11% Similarity=0.398 Sum_probs=30.8
Q ss_pred ceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec
Q 001178 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 590 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
.|.++.+ +..++++.+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4554444 467999999999999999999999988776
No 402
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=24.22 E-value=53 Score=25.62 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=26.0
Q ss_pred CcchHHHHHHHHHhhhhccH-HHHHHHHHHhcCCCcc
Q 001178 2 SSLSRELVFLILQFLDEEKF-KESVHRLEQESGFFFN 37 (1131)
Q Consensus 2 ~~~~~e~~rli~q~L~~~g~-~~s~~~L~~Esg~~~~ 37 (1131)
+-..+.+...|+..|.+.|| ..+...+.++-|+..+
T Consensus 27 ~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~ 63 (76)
T 2k9l_A 27 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE 63 (76)
T ss_dssp CTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH
Confidence 34457799999999999998 4556666666676443
No 403
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=23.53 E-value=3.2e+02 Score=22.96 Aligned_cols=24 Identities=0% Similarity=0.088 Sum_probs=12.8
Q ss_pred eEEEEcCCCcEEEEEeCCeEEEEe
Q 001178 969 TRVQFHSDQVRLLVNHETQLAIYD 992 (1131)
Q Consensus 969 ~~v~~s~d~~~l~~~~d~~i~vwd 992 (1131)
..+.+..+|.+++...++...+|.
T Consensus 52 ~~l~l~~dGNLVl~~~~~~~~vW~ 75 (111)
T 3mez_A 52 CTLRLNNRGQLEIHSANSNTPVWV 75 (111)
T ss_dssp CEEEECTTSCEEEECSSCSSCSEE
T ss_pred EEEEEcCCCcEEEEeCCCCEEEEE
Confidence 455666677665554443333553
No 404
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=23.34 E-value=6.8e+02 Score=26.48 Aligned_cols=192 Identities=10% Similarity=0.043 Sum_probs=105.3
Q ss_pred CCCCEEEEEe-CCeEEEEECCCc---------eeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec------
Q 001178 843 KNDSYVMSAG-GGKVSLFNMMNF---------KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV------ 906 (1131)
Q Consensus 843 ~dg~~la~~~-dg~i~vwd~~~~---------~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~------ 906 (1131)
++..++++.+ +|.|+--.+.+. ..-..++ ....+..+.... ....|+..+..|.++-+....
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 5666777777 788887654321 1122233 244566666555 556666778888877665421
Q ss_pred ---ceeEEe---ecccccCeeEEEEcc---CCCEEEEEeCCCcEEEEEcCCCceee---eeeeecCCCCCCCCceEEEE-
Q 001178 907 ---DEVKTK---LKGHQKHITGLAFST---NLNILVSSGSDAQLIFWNTDTWEKRK---SIAIQLPAGKLPVGETRVQF- 973 (1131)
Q Consensus 907 ---~~~~~~---~~~h~~~V~~l~~s~---dg~~l~s~~~Dg~v~lwd~~~~~~~~---~~~~~~~~~~~~~~v~~v~~- 973 (1131)
|..+.. +. ....|.++..-. ++.+|+.++..|.++.-.+....... ...+.... ...+..+..
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~---~d~lv~v~~~ 158 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE---GDALVGVALT 158 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT---TCCEEEEEEE
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC---CCEEEEEEEe
Confidence 222211 22 234566654432 45689999999999998876533211 11122211 234444444
Q ss_pred cCCCcEEEEEeCCeEEEEeCCCcccc-------eeeecCCCCCCCeEEEEEcc---------------------------
Q 001178 974 HSDQVRLLVNHETQLAIYDGSKMECI-------RQWVPQDVLSSPISSAAYSC--------------------------- 1019 (1131)
Q Consensus 974 s~d~~~l~~~~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~v~~i~~s~--------------------------- 1019 (1131)
..+...++.+..|.+..++...-... +.+... ....|.++...+
T Consensus 159 ~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~--~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~ 236 (370)
T 3l6v_A 159 DGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA--KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPA 236 (370)
T ss_dssp CSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC--TTCCEEEEEEECCC-------------------------
T ss_pred CCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC--CCCEEEEEEEecccccccccccccccccccccccccccc
Confidence 34445555677787777765432111 111111 134566665554
Q ss_pred --------CCCEEEEEecCCcEEEEECCCCc
Q 001178 1020 --------NSQLIYATFTDGSIGVFDADSLR 1042 (1131)
Q Consensus 1020 --------dg~~l~s~~~dg~i~vwd~~~~~ 1042 (1131)
++..|++.+..|..+...+....
T Consensus 237 ~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~ 267 (370)
T 3l6v_A 237 VIDVADNGDVAYILTATENGYGKRTPLAEYP 267 (370)
T ss_dssp ----------CEEEEEETTSEEEEEEGGGSC
T ss_pred ccccccccCCceEEEeeCCCCEEEEEHHHhc
Confidence 45688899999999998876443
No 405
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=21.99 E-value=59 Score=25.79 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc
Q 001178 6 RELVFLILQFLDEEKFKESVHRLEQESGFFFN 37 (1131)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~ 37 (1131)
.++.+-|+++|++.| .++..|-+|-|++-.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 467888999999999 899999999999764
No 406
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=21.94 E-value=9e+02 Score=27.34 Aligned_cols=133 Identities=9% Similarity=0.011 Sum_probs=69.5
Q ss_pred EEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEec--------------CCcEEE
Q 001178 970 RVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT--------------DGSIGV 1035 (1131)
Q Consensus 970 ~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~--------------dg~i~v 1035 (1131)
...-.++|.++.. ....+..+|.. ++.+..+.........-..+...++|++|+++.. +..|..
T Consensus 211 ~~~g~~nG~l~~g-~G~~i~elD~~-Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~E 288 (571)
T 3elq_A 211 GIRETPRGTFTAV-QGQHWYEFDMM-GQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILE 288 (571)
T ss_dssp EEEECTTSCEEEE-EBTEEEEECTT-CCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEE
T ss_pred EEEecCCCCEEEe-cCcEEEEECCC-CcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccEEEE
Confidence 3333466665553 33456666654 4444443322100001123566889998876532 345677
Q ss_pred EECCCCceeeEecCCccccCCC--------------------------C-------------CCCCccccEEEEEcCCCC
Q 001178 1036 FDADSLRLRCRIAPSAYMSQAS--------------------------P-------------NSSQTVFPLVVTSHPQEP 1076 (1131)
Q Consensus 1036 wd~~~~~~~~~~~~~~~~~~~~--------------------------~-------------~~~~~v~~~~v~~~p~~~ 1076 (1131)
.| .+|+.+........+.... . ....-...-+|.+.+.++
T Consensus 289 VD-~tGeVv~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~~dd 367 (571)
T 3elq_A 289 VD-KSGRVVDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDAKDD 367 (571)
T ss_dssp EC-TTSCEEEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEETTTT
T ss_pred EC-CCCCEEEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcCCCC
Confidence 78 7888777766322221000 0 000112223566777555
Q ss_pred CeEEEEecCCcEEEEecCCCccccccccCCC
Q 001178 1077 NQLAVGLTDGSVKVIEPSETERKWGVAVPVD 1107 (1131)
Q Consensus 1077 ~~l~s~~~Dg~v~iW~~~~~~~~w~~~~p~~ 1107 (1131)
++|+|+=.- .|..-+. +++-.|.+..+..
T Consensus 368 ~~liSsR~~-~I~~Id~-tG~V~W~LGg~~~ 396 (571)
T 3elq_A 368 SIILSSRHQ-GVVKIGR-DKQVKWILAPSKG 396 (571)
T ss_dssp EEEEEETTT-EEEEEET-TSCEEEEESCSTT
T ss_pred EEEEECCcc-EEEEEcC-CCcEEEEECCCCC
Confidence 566665544 6655565 6777799988764
No 407
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=21.83 E-value=42 Score=23.87 Aligned_cols=15 Identities=33% Similarity=0.811 Sum_probs=12.4
Q ss_pred hHHHHHHHHHhhhhc
Q 001178 5 SRELVFLILQFLDEE 19 (1131)
Q Consensus 5 ~~e~~rli~q~L~~~ 19 (1131)
+++++..|+|||+..
T Consensus 2 ~K~la~sIi~FL~~~ 16 (52)
T 4gof_A 2 KKRLAYAIIQFLHDQ 16 (52)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHh
Confidence 578999999999763
No 408
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=21.21 E-value=3.6e+02 Score=27.11 Aligned_cols=101 Identities=12% Similarity=0.109 Sum_probs=52.0
Q ss_pred HhhhhccHHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHHHHHHHHHHHHhcC
Q 001178 14 QFLDEEKFKESVHRLEQESGFFFN-----MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRH 88 (1131)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~Ell~~~ 88 (1131)
.++..--|.++...+++=-....+ ...-+-.+..|++++|+..+.++....... . ...-..-++++..+
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~----~--~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT----R--YQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH----H--HHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch----H--HHHHHHHHHHHhhc
Confidence 334444466666655543333222 223345567788888888888774432211 1 11112234455556
Q ss_pred CHHHHHHHHHhhcccccccCHHHHHHHHHhhcc
Q 001178 89 DRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 121 (1131)
Q Consensus 89 ~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1131)
+..+|+..|++.+.-- ..+.+-...|+.++..
T Consensus 200 ~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 200 ADTPEIQQLQQQVAEN-PEDAALATQLALQLHQ 231 (287)
T ss_dssp TSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHhcC-CccHHHHHHHHHHHHH
Confidence 6667777777654322 1245555566665543
No 409
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=20.28 E-value=3.4e+02 Score=23.83 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHHHHHHHHHHHHhcCCHHHHHH
Q 001178 21 FKESVHRLEQESGFFFN-----MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVE 95 (1131)
Q Consensus 21 ~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~Ell~~~~~~~a~~ 95 (1131)
+.++...+++-.....+ ...=+-....|+|++|++++++...+.... .. +.+.+ =. -+...++.++|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~~-a~~~l-g~---~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-PK-AHRFL-GL---LYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHHH-HH---HHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HH-HHHHH-HH---HHHHcCchHHHHH
Confidence 44555566555444332 111133467899999999998763332221 11 22211 11 2345699999999
Q ss_pred HHHhhcccccccCHHHHHHHHHhhcc
Q 001178 96 ILVKDLKVFSTFNEELFKEITQLLTL 121 (1131)
Q Consensus 96 ~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1131)
.+++.+.-- ..+++-+..|+.++..
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 999865422 2366777788876654
Done!