Your job contains 1 sequence.
>001179
MARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDA
GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVI
LPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGK
EYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS
LTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKL
FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF
FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF
FRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG
NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAH
LRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIEL
IGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC
QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT
GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVID
SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANI
RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM
LLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVE
VLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRF
GEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPP
ARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDGATA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001179
(1131 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2019272 - symbol:NRPA2 "nuclear RNA polymerase... 4184 0. 2
ZFIN|ZDB-GENE-040426-1598 - symbol:polr1b "polymerase (RN... 1288 3.5e-235 3
UNIPROTKB|E2REX8 - symbol:POLR1B "DNA-directed RNA polyme... 1278 4.0e-234 3
UNIPROTKB|A6QLS0 - symbol:POLR1B "DNA-directed RNA polyme... 1273 5.8e-233 3
UNIPROTKB|F5GZX4 - symbol:POLR1B "DNA-directed RNA polyme... 1271 7.3e-233 3
UNIPROTKB|Q9H9Y6 - symbol:POLR1B "DNA-directed RNA polyme... 1271 7.3e-233 3
ASPGD|ASPL0000012082 - symbol:AN3933 species:162425 "Emer... 2163 5.8e-231 3
UNIPROTKB|F5H643 - symbol:POLR1B "DNA-directed RNA polyme... 1271 6.1e-207 2
RGD|620822 - symbol:Polr1b "polymerase (RNA) I polypeptid... 1095 2.7e-203 3
UNIPROTKB|O54888 - symbol:Polr1b "DNA-directed RNA polyme... 1095 2.7e-203 3
POMBASE|SPBP23A10.07 - symbol:rpa2 "DNA-directed RNA poly... 1900 4.1e-199 2
DICTYBASE|DDB_G0293560 - symbol:rpa2 "RNA polymerase I, s... 1788 9.3e-189 2
MGI|MGI:108014 - symbol:Polr1b "polymerase (RNA) I polype... 1274 9.7e-189 3
UNIPROTKB|F8W898 - symbol:POLR1B "DNA-directed RNA polyme... 1236 6.1e-183 3
FB|FBgn0003278 - symbol:RpI135 "RNA polymerase I 135kD su... 884 2.6e-161 3
UNIPROTKB|F1SUA2 - symbol:POLR1B "DNA-directed RNA polyme... 1276 1.1e-154 3
WB|WBGene00008781 - symbol:rpoa-2 species:6239 "Caenorhab... 1147 2.6e-140 3
CGD|CAL0002109 - symbol:RPA135 species:5476 "Candida albi... 1329 1.1e-137 2
SGD|S000006214 - symbol:RPA135 "RNA polymerase I second l... 1312 2.5e-136 2
UNIPROTKB|F1NLV9 - symbol:F1NLV9 "DNA-directed RNA polyme... 1256 1.7e-135 2
SGD|S000005733 - symbol:RET1 "Second-largest subunit of R... 853 6.8e-112 4
GENEDB_PFALCIPARUM|PF11_0358 - symbol:PF11_0358 "DNA-dire... 696 1.5e-109 3
UNIPROTKB|Q8II17 - symbol:PF11_0358 "DNA-directed RNA pol... 696 1.5e-109 3
CGD|CAL0002357 - symbol:orf19.5847 species:5476 "Candida ... 747 8.4e-103 5
ZFIN|ZDB-GENE-030131-2887 - symbol:polr3b "polymerase (RN... 841 7.1e-101 3
UNIPROTKB|E1BRJ4 - symbol:POLR3B "DNA-directed RNA polyme... 830 1.5e-100 3
MGI|MGI:1917678 - symbol:Polr3b "polymerase (RNA) III (DN... 825 1.0e-99 3
RGD|1565311 - symbol:Polr3b "polymerase (RNA) III (DNA di... 825 1.0e-99 3
UNIPROTKB|E1BPX6 - symbol:POLR3B "Uncharacterized protein... 824 3.8e-99 3
UNIPROTKB|E2RHZ2 - symbol:POLR3B "DNA-directed RNA polyme... 824 3.8e-99 3
UNIPROTKB|Q9NW08 - symbol:POLR3B "DNA-directed RNA polyme... 824 3.8e-99 3
FB|FBgn0004463 - symbol:RpIII128 "RNA polymerase III 128k... 731 7.7e-93 4
UNIPROTKB|F1NRJ5 - symbol:F1NRJ5 "Uncharacterized protein... 907 5.7e-91 1
ASPGD|ASPL0000054387 - symbol:AN0321 species:162425 "Emer... 750 5.0e-86 4
GENEDB_PFALCIPARUM|PFL0330c - symbol:PFL0330c "DNA-direct... 454 1.3e-84 5
UNIPROTKB|Q8I5X9 - symbol:PFL0330c "DNA-directed RNA poly... 454 1.3e-84 5
POMBASE|SPAC4G9.08c - symbol:rpc2 "DNA-directed RNA polym... 740 2.1e-84 3
DICTYBASE|DDB_G0288257 - symbol:rpb2 "RNA polymerase II c... 688 3.4e-84 5
TAIR|locus:2153323 - symbol:NRPC2 "nuclear RNA polymerase... 769 3.5e-84 2
GENEDB_PFALCIPARUM|PFB0715w - symbol:PFB0715w "DNA-direct... 454 5.4e-84 4
UNIPROTKB|O96236 - symbol:PFB0715w "DNA-directed RNA poly... 454 5.4e-84 4
ASPGD|ASPL0000039770 - symbol:AN9120 species:162425 "Emer... 694 7.9e-83 4
CGD|CAL0004145 - symbol:orf19.3349 species:5476 "Candida ... 687 2.0e-81 4
UNIPROTKB|Q5A8Y5 - symbol:RPB140 "DNA-directed RNA polyme... 687 2.0e-81 4
TAIR|locus:2119013 - symbol:NRPB2 species:3702 "Arabidops... 739 9.2e-81 4
DICTYBASE|DDB_G0288449 - symbol:rpc2 "RNA polymerase III,... 714 6.9e-80 4
UNIPROTKB|F1P4F2 - symbol:POLR2B "DNA-directed RNA polyme... 713 1.7e-79 3
UNIPROTKB|C9J4M6 - symbol:POLR2B "DNA-directed RNA polyme... 712 2.7e-78 3
UNIPROTKB|F1NCB0 - symbol:POLR2B "DNA-directed RNA polyme... 713 7.7e-78 3
UNIPROTKB|C9J2Y9 - symbol:POLR2B "DNA-directed RNA polyme... 712 9.1e-78 3
UNIPROTKB|P30876 - symbol:POLR2B "DNA-directed RNA polyme... 712 1.0e-77 3
MGI|MGI:2388280 - symbol:Polr2b "polymerase (RNA) II (DNA... 712 1.0e-77 3
RGD|1309477 - symbol:Polr2b "polymerase (RNA) II (DNA dir... 712 1.0e-77 3
UNIPROTKB|I3LGP4 - symbol:POLR2B "DNA-directed RNA polyme... 711 1.2e-77 3
UNIPROTKB|A5PJW8 - symbol:POLR2B "DNA-directed RNA polyme... 711 1.4e-77 3
UNIPROTKB|E2RNN5 - symbol:POLR2B "DNA-directed RNA polyme... 711 1.4e-77 3
POMBASE|SPAC23G3.01 - symbol:rpb2 "RNA polymerase II comp... 702 8.8e-77 4
SGD|S000005677 - symbol:RPB2 "RNA polymerase II second la... 694 5.6e-76 3
WB|WBGene00016140 - symbol:rpb-2 species:6239 "Caenorhabd... 695 1.6e-75 3
FB|FBgn0262955 - symbol:RpII140 "RNA polymerase II 140kD ... 684 2.2e-74 3
TAIR|locus:2095233 - symbol:NRPD2A "nuclear RNA polymeras... 655 4.4e-74 4
ZFIN|ZDB-GENE-041008-1 - symbol:polr2b "polymerase (RNA) ... 648 1.1e-68 2
WB|WBGene00017300 - symbol:rpc-2 species:6239 "Caenorhabd... 643 4.4e-68 2
UNIPROTKB|I3LGN1 - symbol:LOC100737037 "DNA-directed RNA ... 579 1.6e-59 2
UNIPROTKB|H7C0D9 - symbol:POLR1B "DNA-directed RNA polyme... 469 1.2e-55 2
UNIPROTKB|F1SPQ0 - symbol:LOC100737037 "DNA-directed RNA ... 466 5.2e-49 2
TIGR_CMR|CHY_2318 - symbol:CHY_2318 "DNA-directed RNA pol... 277 2.1e-25 4
TIGR_CMR|BA_0102 - symbol:BA_0102 "DNA-directed RNA polym... 277 2.4e-25 3
TIGR_CMR|SO_0224 - symbol:SO_0224 "DNA-directed RNA polym... 163 2.0e-24 7
TIGR_CMR|SPO_3508 - symbol:SPO_3508 "DNA-directed RNA pol... 164 3.1e-22 5
TIGR_CMR|CJE_0528 - symbol:CJE_0528 "DNA-directed RNA pol... 150 6.2e-22 6
UNIPROTKB|P60281 - symbol:rpoB "DNA-directed RNA polymera... 145 3.8e-21 7
UNIPROTKB|P0A680 - symbol:rpoB "DNA-directed RNA polymera... 147 7.7e-21 7
TIGR_CMR|ECH_0952 - symbol:ECH_0952 "DNA-directed RNA pol... 156 1.1e-20 5
TIGR_CMR|NSE_0678 - symbol:NSE_0678 "DNA-directed RNA pol... 167 1.4e-20 5
TIGR_CMR|CBU_0231 - symbol:CBU_0231 "DNA-directed RNA pol... 161 3.2e-20 5
TIGR_CMR|APH_1024 - symbol:APH_1024 "DNA-directed RNA pol... 147 6.2e-20 6
UNIPROTKB|I3L6M3 - symbol:LOC100737037 "Uncharacterized p... 242 4.0e-19 1
TIGR_CMR|DET_0603 - symbol:DET_0603 "DNA-directed RNA pol... 142 4.7e-19 6
TIGR_CMR|GSU_2863 - symbol:GSU_2863 "DNA-directed RNA pol... 144 7.7e-19 5
UNIPROTKB|P0A8V2 - symbol:rpoB "RNA polymerase, beta subu... 154 8.8e-19 6
UNIPROTKB|Q9KV30 - symbol:rpoB "DNA-directed RNA polymera... 144 6.1e-18 8
TIGR_CMR|VC_0328 - symbol:VC_0328 "DNA-directed RNA polym... 144 6.1e-18 8
UNIPROTKB|P0C501 - symbol:rpoB "DNA-directed RNA polymera... 220 1.9e-17 5
UNIPROTKB|P0C502 - symbol:rpoB "DNA-directed RNA polymera... 220 1.9e-17 5
UNIPROTKB|P0C503 - symbol:rpoB "DNA-directed RNA polymera... 220 1.9e-17 5
UNIPROTKB|Q6ENI4 - symbol:rpoB "DNA-directed RNA polymera... 220 1.9e-17 5
UNIPROTKB|F8VRE2 - symbol:POLR3B "DNA-directed RNA polyme... 161 4.3e-16 2
UNIPROTKB|P21421 - symbol:rpoB "DNA-directed RNA polymera... 187 1.8e-15 5
TIGR_CMR|CPS_4769 - symbol:CPS_4769 "DNA-directed RNA pol... 150 2.0e-11 5
UNIPROTKB|I3LR52 - symbol:I3LR52 "Uncharacterized protein... 143 1.4e-08 1
>TAIR|locus:2019272 [details] [associations]
symbol:NRPA2 "nuclear RNA polymerase A2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002684 GO:GO:0005829 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 IPI:IPI00518589 RefSeq:NP_564341.2
UniGene:At.16301 ProteinModelPortal:F4I366 SMR:F4I366 PRIDE:F4I366
EnsemblPlants:AT1G29940.1 GeneID:839872 KEGG:ath:AT1G29940
Uniprot:F4I366
Length = 1178
Score = 4184 (1477.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 786/1093 (71%), Positives = 932/1093 (85%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQAKISYTG MADV F+Y D VVR++F+FGQFP+ML ++ C L+GAD +KL+ K
Sbjct: 90 CRQAKISYTGTFMADVCFKYNDG--VVVRDKFDFGQFPIMLMSKLCSLKGADCRKLLKCK 147
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E +EMGGYFILNG+ERVFR VI PK+N+P SM+R+SFRDR+EGY+ KAVV RCVR DQS
Sbjct: 148 ESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTRCVRDDQS 207
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
SVT+KLYYL NGS R+GFW+ G+EYLLPVG+VLKAL ++ D EI+ L CCY E Y +
Sbjct: 208 SVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESLNCCYSEHYGRGD 267
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
GA+G+ LV ER KIIL EV+DL L TR QC +H+G+HFQPV+DG++ ES VAE V+RD
Sbjct: 268 GAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQPVLDGVKKESLSIVAEAVLRD 327
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
Y+FVHL++++DKFNLLIF++QKL+SLVD TS+ DNPDSLQNQEIL+PGH+ITIYLKEKLE
Sbjct: 328 YLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKEKLE 387
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
+WLRK K L++DE++N KF F +LA++KK++ KNP + IGTSIET+LKTG L TQ+GL
Sbjct: 388 EWLRKCKSLLKDELDNTNSKFSFESLADVKKLINKNPPRSIGTSIETLLKTGALKTQSGL 447
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQRAGYTVQAERLNFLRF+SFFRAVHRGASFAGLRTT+VRKLLPESWGFLCPVHTPDG
Sbjct: 448 DLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDG 507
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNHMT T R+ S +DS+GNIRDF K+R S++ VL G GM+PSLPKLV++GPP V+
Sbjct: 508 TPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVI 567
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
VLLDG+VVG + S+ + KVV+++RRLKV A SVIP+DLEVGYVP S+GG+YPGLYL +
Sbjct: 568 HVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYVPTSMGGSYPGLYLASC 627
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
P +F+RPV+NIS+PS+ NIELIGPFEQVFMEI CPDGG+GGR N+ ATHEEIHPTGM
Sbjct: 628 PARFIRPVKNISIPSD---NIELIGPFEQVFMEISCPDGGNGGRNNSSLATHEEIHPTGM 684
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
+SVVANLTP+SDHNQSPRNMYQCQMAKQTM +S QAL+FRADQK+YHLQTPQ+P+VRT T
Sbjct: 685 ISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQTPQSPVVRTKT 744
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
YT Y IDE PTGTNAIVAVLA+TG+DMEDAMILNKSSV+RGMCHGQIYQTE IDLSD +
Sbjct: 745 YTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNS 804
Query: 758 KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE 817
+ D G K FRR+ + K+ H ID+DGLP VGQ ++P EPYCSIYD+ TN R RKG++
Sbjct: 805 RFDSGSKSFRRSTN-KAEHFRIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTD 863
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
V VD+V+VDMK+ K+ PQ+ANIRFRH RNPIIGDKFSSRHGQKGVCSQLWPDIDMPF+G
Sbjct: 864 PVIVDFVSVDMKSKKH-PQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNG 922
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
VTGMRPDLIINPHAFPSRMTIAMLLES+AAKGGSLHGKF+DATPF ++VKKTNG+ +E
Sbjct: 923 VTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGE---EE 979
Query: 938 SKS--LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
SKS LVD+LG ML+ GFN++G E LYSG G EL CEIF+GPVYYQRLRHMVSDKFQV
Sbjct: 980 SKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQV 1039
Query: 996 RSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
RSTG +DQ+T QP FGEMERDSLLAHGA+YLLHDRLHT SD+H+ADVCSL
Sbjct: 1040 RSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSL 1099
Query: 1056 CGSVLTATFIH-PQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAEL 1114
CGS+LT++ ++ QK+ I+EIG LPP R PKKVTC++C+TSKGMETVAMPYVFRYLAAEL
Sbjct: 1100 CGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCKTSKGMETVAMPYVFRYLAAEL 1159
Query: 1115 AAMNIKITLQLGD 1127
A+MNIK+TLQL D
Sbjct: 1160 ASMNIKMTLQLSD 1172
Score = 95 (38.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKI 43
DF+ L LV HHIESFDYM +GL MF+ + +
Sbjct: 15 DFKELHNLVTHHIESFDYMTLKGLDVMFNRIKPVSV 50
>ZFIN|ZDB-GENE-040426-1598 [details] [associations]
symbol:polr1b "polymerase (RNA) I polypeptide B"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
ZFIN:ZDB-GENE-040426-1598 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
EMBL:BC097040 IPI:IPI00859868 RefSeq:NP_956812.2 UniGene:Dr.117892
STRING:Q4V967 DNASU:325603 GeneID:325603 KEGG:dre:325603
InParanoid:Q4V967 NextBio:20809377 ArrayExpress:Q4V967
Uniprot:Q4V967
Length = 1132
Score = 1288 (458.5 bits), Expect = 3.5e-235, Sum P(3) = 3.5e-235
Identities = 274/554 (49%), Positives = 349/554 (62%)
Query: 519 VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA--YPGLYLFT 576
V+LDG ++G + V+ LRR KV +P E+ VP + G A YPGLYLFT
Sbjct: 554 VILDGAMIGWVEKEVAPSVIESLRRFKVLGEKKVPPWTEIVLVPQT-GKASLYPGLYLFT 612
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAFPATHEEIHP 634
+P + VR VRN+SL +E LIG FEQV++ + + DG TH+E+ P
Sbjct: 613 TPCRMVRTVRNLSLGKQE-----LIGIFEQVYLNVGIFEKEIEDG------VTTHQELFP 661
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
MLSVVA P+SDHNQSPRNMYQCQM+KQTMGF + + ++R+D KLY LQTPQ+P+VR
Sbjct: 662 HSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQTPQSPLVR 721
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NKSS +RG HG +Y+TE IDLS+
Sbjct: 722 PAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEIIDLSE 781
Query: 755 DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRK 814
K D + D K + +D+DGLP++G ++ G+P+ T K
Sbjct: 782 KV-KGDDSIVFGVKPGDPKVMGK-LDADGLPFIGSVLKYGDPFYGYISLNTGQSHVYFYK 839
Query: 815 GSESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
ES VD + V + ++ + R RNP IGDKF+SRHGQKG+ S+LWP DM
Sbjct: 840 YQESCVVDNIKVCSNETGTGRFKRICVTSRVPRNPTIGDKFASRHGQKGILSRLWPAEDM 899
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDT 933
PF+ +GM PD++ NPH FPSRMTI ML+ES+A K SLHG DATPF S
Sbjct: 900 PFTE-SGMSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGLCHDATPFTFS-------- 950
Query: 934 GTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKF 993
E S ++ GE+L+ G+NY+G E LYSG+ G EL +IFIG VYYQRLRHMVSDKF
Sbjct: 951 ---EENSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKF 1007
Query: 994 QVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVC 1053
QVR+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA VC
Sbjct: 1008 QVRTTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVC 1067
Query: 1054 SLCGSVLTATFIHP 1067
CGS+L+ P
Sbjct: 1068 MDCGSLLSTLLEKP 1081
Score = 945 (337.7 bits), Expect = 3.5e-235, Sum P(3) = 3.5e-235
Identities = 211/545 (38%), Positives = 326/545 (59%)
Query: 70 NFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMS 129
+ GQ P+M+K++ C+L G ++L+ EEA EMGGYFI+NG+E+V R +I+P++NYP++
Sbjct: 132 SLGQMPIMVKSKLCNLHGLSPKELLEHHEEAEEMGGYFIVNGIEKVIRLLIMPRRNYPIA 191
Query: 130 MVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV 189
+ R F+ R +GYT A+ +RCV+++ +++ + L+YL NG+V + F + + + LP+G
Sbjct: 192 VSRPKFKSRGQGYTQYAISMRCVKEEHTAINMNLHYLDNGTVMVNFIYRKELFFLPLGFA 251
Query: 190 LKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQ 249
LKALVD +D +I+ L K +++ S VSE ++I++ D TT+++ L
Sbjct: 252 LKALVDYSDYQIYQELI-----KGREDNSFYKS-CVSEMLRIVM----DQGCTTKIKVLN 301
Query: 250 HIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSV 309
++GE F+ ++ + ++ A ++ + + +HL + +KF +L M +KLFS +
Sbjct: 302 YLGERFRVKLNLPEWFTHEQCAHFLLDECLCIHLKTDVEKFYMLCLMTRKLFSFAKQECM 361
Query: 310 SDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV 369
+NPDS E+L PG L ++LKEK+E WL K ++ + + G ++ K+
Sbjct: 362 EENPDSPMFHEVLTPGQLYLMFLKEKMEGWLVSVKLALEKKPQRVGG----LTPDSMTKL 417
Query: 370 MEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS 429
N + + E +L TG L ++TGL + Q +G V A++LNF+R++S FR VHRGA+
Sbjct: 418 F--NMGTDLTKAFEYLLATGNLMSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAA 475
Query: 430 FAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR-VASYYDSRGNIRDFSKM 488
FA +RTT+VRKLLPESWGFLCPVHTPDGEPCGL+NHMT+ C VA Y + S +
Sbjct: 476 FAKMRTTTVRKLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIVAPVYPT-------STL 528
Query: 489 RTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
L +GV P S V+LDG ++G + V+ LRR KV
Sbjct: 529 PG--LLCSLGVNAADGNPGQAYSD---CYPVILDGAMIGWVEKEVAPSVIESLRRFKVLG 583
Query: 549 ASVIPDDLEVGYVPLSLGGA--YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
+P E+ VP + G A YPGLYLFT+P + VR VRN+SL +E LIG FEQ
Sbjct: 584 EKKVPPWTEIVLVPQT-GKASLYPGLYLFTTPCRMVRTVRNLSLGKQE-----LIGIFEQ 637
Query: 607 VFMEI 611
V++ +
Sbjct: 638 VYLNV 642
Score = 532 (192.3 bits), Expect = 2.3e-185, Sum P(2) = 2.3e-185
Identities = 108/318 (33%), Positives = 193/318 (60%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y KL+ADV + ++++ + GQ P+M+K++ C+L G ++L+
Sbjct: 102 CRGRRCTYRAKLVADVSWSVNGVPKGIIKQ--SLGQMPIMVKSKLCNLHGLSPKELLEHH 159
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++NYP+++ R F+ R +GYT A+ +RCV+++ +
Sbjct: 160 EEAEEMGGYFIVNGIEKVIRLLIMPRRNYPIAVSRPKFKSRGQGYTQYAISMRCVKEEHT 219
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
++ + L+YL NG+V + F + + + LP+G LKALVD +D +I+ L K +++
Sbjct: 220 AINMNLHYLDNGTVMVNFIYRKELFFLPLGFALKALVDYSDYQIYQELI-----KGREDN 274
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
S VSE ++I++ D TT+++ L ++GE F+ ++ + ++ A ++ +
Sbjct: 275 SFYKS-CVSEMLRIVM----DQGCTTKIKVLNYLGERFRVKLNLPEWFTHEQCAHFLLDE 329
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ +HL + +KF +L M +KLFS + +NPDS E+L PG L ++LKEK+E
Sbjct: 330 CLCIHLKTDVEKFYMLCLMTRKLFSFAKQECMEENPDSPMFHEVLTPGQLYLMFLKEKME 389
Query: 338 DWLRKGKKLIQDEIENNG 355
WL K ++ + + G
Sbjct: 390 GWLVSVKLALEKKPQRVG 407
Score = 482 (174.7 bits), Expect = 3.8e-150, Sum P(3) = 3.8e-150
Identities = 100/192 (52%), Positives = 122/192 (63%)
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S ++ GE+L+ G+NY+G E LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 951 EENSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVR 1010
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA VC C
Sbjct: 1011 TTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCMDC 1070
Query: 1057 GSVLTATFIHPQKRAIREIGGLPP---ARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
GS+L+ P PP A +K C C S +ETV++PYVF+Y AE
Sbjct: 1071 GSLLSTLLEKP-----------PPNWSATRHRKTICLLCNKSDSIETVSVPYVFKYFVAE 1119
Query: 1114 LAAMNIKITLQL 1125
LAAMNIKI L +
Sbjct: 1120 LAAMNIKIKLDV 1131
Score = 75 (31.5 bits), Expect = 3.5e-235, Sum P(3) = 3.5e-235
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 11 PLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE--- 67
P++ELV+ HIESFD + +GL + + + Y G ++ + F +P V +
Sbjct: 33 PVQELVKAHIESFDQAVTDGLCRVVEAIPPMEFLYKGDRIS-LSFVEAIIHTPSVSKGGI 91
Query: 68 RFNFGQFPVMLKTRRC 83
+ FP + RRC
Sbjct: 92 SRDLRVFPAECRGRRC 107
Score = 38 (18.4 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 30/168 (17%), Positives = 60/168 (35%)
Query: 647 YSDHNQSPRN-MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDE 705
Y D+ N +Y+ ++ +GF+++AL +D ++Y N++ K + E
Sbjct: 227 YLDNGTVMVNFIYRKELFFLPLGFALKALVDYSDYQIYQELIKGR---EDNSFYKSCVSE 283
Query: 706 Y-----PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVD 760
G + VL Y G + L + H + + I L D K
Sbjct: 284 MLRIVMDQGCTTKIKVLNYLGERFRVKLNLPEWFTHEQCAHFLLDECLCIHLKTDVEKFY 343
Query: 761 RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
+ R+ + ++ P +++ PG+ Y + W
Sbjct: 344 MLCLMTRKLFSFAKQECMEENPDSPMFHEVLTPGQLYLMFLKEKMEGW 391
>UNIPROTKB|E2REX8 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
EMBL:AAEX03010908 RefSeq:XP_003639648.1 Ensembl:ENSCAFT00000011494
GeneID:100856298 KEGG:cfa:100856298 Uniprot:E2REX8
Length = 1135
Score = 1278 (454.9 bits), Expect = 4.0e-234, Sum P(3) = 4.0e-234
Identities = 270/551 (49%), Positives = 344/551 (62%)
Query: 519 VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPGLYLFTS 577
VLLDG +VG + + LR KV IP +EV +P++ YPGL+LFT+
Sbjct: 556 VLLDGVMVGWVDKELAPSIAESLRHFKVLKEKRIPPWMEVALIPMTGKPSLYPGLFLFTT 615
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
P + VRPV+N+ L EE LIG EQ+FM I + A TH+E+ P +
Sbjct: 616 PCRLVRPVQNLELGKEE-----LIGTMEQIFMNIAIFED----EVLAGVTTHQELFPHSL 666
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+VR
Sbjct: 667 LSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLYRLQTPQSPLVRPYM 726
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDLS+
Sbjct: 727 YDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIK 786
Query: 758 KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE 817
+ D + D + L +D DGLP++G + G+PY S + T K E
Sbjct: 787 QGDDSLVFGVKPGDPRILQK-LDDDGLPFIGARLQYGDPYYSYLNLNTGESFVTYYKSKE 845
Query: 818 SVFVDYVAVDMKNSKNLPQKAN-IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
+ VD + V ++ N K I R RNP IGDKF+SRHGQKG+ S+LWP DMPF+
Sbjct: 846 NCIVDNIKVCSNDTGNGRFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFT 905
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
+GM PD++ NPH FPSRMTI ML+ES+A K +LHG DATPF S
Sbjct: 906 E-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFS----------- 953
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S ++ GE+L+ G+N++G E LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 954 EENSALEYFGELLKAAGYNFYGTERLYSGISGIELEADIFIGVVYYQRLRHMVSDKFQVR 1013
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA VC C
Sbjct: 1014 TTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 1073
Query: 1057 GSVLTATFIHP 1067
GS+L+ P
Sbjct: 1074 GSLLSPLLEKP 1084
Score = 952 (340.2 bits), Expect = 4.0e-234, Sum P(3) = 4.0e-234
Identities = 212/542 (39%), Positives = 311/542 (57%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L + L+ EE EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 135 GYIPIMVKSKLCNLHSLPPKALIEHHEEVEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 194
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 195 RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 254
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L K K+E + VS+ ++I++ E +T+ Q L ++
Sbjct: 255 ALVSFSDYQIFQELI-----KGKEEDSFFRNS-VSQMLRIVMEE----GCSTQKQVLNYL 304
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ + AE + I +HL N +KF +L M +KLF+L + D
Sbjct: 305 GERFRVKLSLPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 364
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVM 370
NPDSL NQE+L PG L ++LKEK+E WL I+ ++ +K + N N+ ++
Sbjct: 365 NPDSLVNQEVLTPGQLFLMFLKEKMESWLVS----IKIALDKRSQKTNVSINTENLMRIF 420
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
N + E +L TG L ++TGL Q +G V A++LNF+R++S FR VHRGA F
Sbjct: 421 --NLGTDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADF 478
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
A +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + ++
Sbjct: 479 AKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQCVYTASV-------- 530
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS 550
L +GV + P S VLLDG +VG + + LR KV
Sbjct: 531 PTLLCSLGVTPVDGAPHRPYS---ECYPVLLDGVMVGWVDKELAPSIAESLRHFKVLKEK 587
Query: 551 VIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFM 609
IP +EV +P++ YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM
Sbjct: 588 RIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFM 642
Query: 610 EI 611
I
Sbjct: 643 NI 644
Score = 538 (194.4 bits), Expect = 2.0e-190, Sum P(3) = 2.0e-190
Identities = 117/329 (35%), Positives = 185/329 (56%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y GKL AD+ + ++++ F G P+M+K++ C+L + L+
Sbjct: 103 CRGRRSTYRGKLTADISWAVNGISKGIIKQ-F-LGYIPIMVKSKLCNLHSLPPKALIEHH 160
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V + CVR++ S
Sbjct: 161 EEVEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHS 220
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L K K+E
Sbjct: 221 AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI-----KGKEED 275
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ VS+ ++I++ E +T+ Q L ++GE F+ + AE +
Sbjct: 276 SFFRNS-VSQMLRIVMEE----GCSTQKQVLNYLGERFRVKLSLPDWYPNEQAAEFLFNQ 330
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L ++LKEK+E
Sbjct: 331 CICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKME 390
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANI 366
WL K + + + NL I
Sbjct: 391 SWLVSIKIALDKRSQKTNVSINTENLMRI 419
Score = 475 (172.3 bits), Expect = 2.1e-149, Sum P(3) = 2.1e-149
Identities = 98/192 (51%), Positives = 122/192 (63%)
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S ++ GE+L+ G+N++G E LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 954 EENSALEYFGELLKAAGYNFYGTERLYSGISGIELEADIFIGVVYYQRLRHMVSDKFQVR 1013
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA VC C
Sbjct: 1014 TTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 1073
Query: 1057 GSVLTATFIHPQKRAIREIGGLPP---ARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
GS+L+ P PP A +K C C S ++TV++PYVFRY AE
Sbjct: 1074 GSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCDRSDTIDTVSVPYVFRYFVAE 1122
Query: 1114 LAAMNIKITLQL 1125
LAAMNIK+ L +
Sbjct: 1123 LAAMNIKVKLDV 1134
Score = 68 (29.0 bits), Expect = 4.0e-234, Sum P(3) = 4.0e-234
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 12 LRELVRHHIESFDYMLDEGLS 32
L+EL R H+ESF+Y + EGLS
Sbjct: 35 LQELTRAHVESFNYAVREGLS 55
Score = 41 (19.5 bits), Expect = 5.0e-138, Sum P(3) = 5.0e-138
Identities = 20/63 (31%), Positives = 27/63 (42%)
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIR-DFSKMRTSILRVLIG--VGMIPS 504
+ P P G C LN + CR S Y RG + D S I + +I +G IP
Sbjct: 82 ISPPMVPKGNICKELNIYPAECRGRRSTY--RGKLTADISWAVNGISKGIIKQFLGYIPI 139
Query: 505 LPK 507
+ K
Sbjct: 140 MVK 142
>UNIPROTKB|A6QLS0 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677
GO:GO:0009790 GO:GO:0009303 GO:GO:0007566 GO:GO:0005736
GO:GO:0003899 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 HOGENOM:HOG000222963 EMBL:DAAA02031075
EMBL:BC148064 IPI:IPI00708666 RefSeq:NP_001093762.1
UniGene:Bt.13051 STRING:A6QLS0 Ensembl:ENSBTAT00000018830
GeneID:282342 KEGG:bta:282342 InParanoid:A6QLS0 NextBio:20806137
Uniprot:A6QLS0
Length = 1135
Score = 1273 (453.2 bits), Expect = 5.8e-233, Sum P(3) = 5.8e-233
Identities = 270/551 (49%), Positives = 343/551 (62%)
Query: 519 VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPGLYLFTS 577
VLLDG ++G + LR KV IP +EV +P++ YPGLYLFT+
Sbjct: 556 VLLDGVMIGWADKEIAPGIADSLRHFKVLREKRIPPWMEVALIPMTGKPSLYPGLYLFTT 615
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
P + VRPV+N+ L EE LIG EQ+FM + + A TH+E+ P +
Sbjct: 616 PCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVLAGVTTHQELFPHSL 666
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+VR
Sbjct: 667 LSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPYM 726
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDLS+
Sbjct: 727 YDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSERIK 786
Query: 758 KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE 817
+ D + D + L +D+DGLP++G + G+PY S + T K E
Sbjct: 787 QGDDSLVFGVKPGDPRVLQK-LDNDGLPFIGAQLKYGDPYYSYLNLNTGEGFVMYYKSKE 845
Query: 818 SVFVDYVAVDMKNSKNLPQKAN-IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
+ VD + V ++ K I R RNP IGDKF+SRHGQKG+ S+LWP DMPF+
Sbjct: 846 NCIVDNIKVCSNDTGTGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFT 905
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
+GM PD++ NPH FPSRMTI ML+ES+A K +LHG DATPF S
Sbjct: 906 E-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS----------- 953
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S ++ GEML+ G+NY+G E LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 954 EENSALEYFGEMLKAAGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVR 1013
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA VC C
Sbjct: 1014 TTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 1073
Query: 1057 GSVLTATFIHP 1067
GS+L+ P
Sbjct: 1074 GSLLSPLLEKP 1084
Score = 946 (338.1 bits), Expect = 5.8e-233, Sum P(3) = 5.8e-233
Identities = 216/544 (39%), Positives = 312/544 (57%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L + L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MV
Sbjct: 135 GYVPIMVKSKLCNLYNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMV 194
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 195 RPKWKSRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 254
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L K K++ + VS+ ++I++ E +T+ Q L ++
Sbjct: 255 ALVSFSDYQIFQELI-----KGKEDDSFFRNS-VSQMLRIVMEE----GCSTQKQVLNYL 304
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ + AE + I +HL N +KF +L M +KLF+L + +
Sbjct: 305 GERFRVKLSLPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEE 364
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVM 370
NPDSL NQE+L PG L ++LKEKLE WL I+ I+ +K + N N+ K+
Sbjct: 365 NPDSLMNQEVLTPGQLFLMFLKEKLEAWLVS----IKIAIDKKSQKTNVSLNSENLMKIF 420
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
+ E +L TG L ++TGL Q +G V A++LNF+R++S FR VHRGA F
Sbjct: 421 SLGID--LTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADF 478
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
A +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + S
Sbjct: 479 AKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQ----------SVYTA 528
Query: 491 SILRVLIGVGMIP--SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
SI +L +G+ P P S VLLDG ++G + LR KV
Sbjct: 529 SIPALLCNLGVTPVDGTPHRPYS---ECYPVLLDGVMIGWADKEIAPGIADSLRHFKVLR 585
Query: 549 ASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQV 607
IP +EV +P++ YPGLYLFT+P + VRPV+N+ L EE LIG EQ+
Sbjct: 586 EKRIPPWMEVALIPMTGKPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQI 640
Query: 608 FMEI 611
FM +
Sbjct: 641 FMNV 644
Score = 542 (195.9 bits), Expect = 2.5e-190, Sum P(3) = 2.5e-190
Identities = 120/329 (36%), Positives = 187/329 (56%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y GKL AD+ + V+++ F G P+M+K++ C+L + L+
Sbjct: 103 CRGRRSTYRGKLTADISWSVNGISKGVIKQ-F-LGYVPIMVKSKLCNLYNLPPKALIEHH 160
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V + CVR++ S
Sbjct: 161 EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGPGYTQYGVSMHCVREEHS 220
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L K K++
Sbjct: 221 AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI-----KGKEDD 275
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ VS+ ++I++ E +T+ Q L ++GE F+ + AE +
Sbjct: 276 SFFRNS-VSQMLRIVMEE----GCSTQKQVLNYLGERFRVKLSLPDWYPNEQAAEFLFNQ 330
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL N +KF +L M +KLF+L + +NPDSL NQE+L PG L ++LKEKLE
Sbjct: 331 CICIHLKSNTEKFYMLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLFLMFLKEKLE 390
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANI 366
WL K I + + + NL I
Sbjct: 391 AWLVSIKIAIDKKSQKTNVSLNSENLMKI 419
Score = 481 (174.4 bits), Expect = 2.1e-149, Sum P(3) = 2.1e-149
Identities = 99/192 (51%), Positives = 122/192 (63%)
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S ++ GEML+ G+NY+G E LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 954 EENSALEYFGEMLKAAGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVR 1013
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA VC C
Sbjct: 1014 TTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 1073
Query: 1057 GSVLTATFIHPQKRAIREIGGLPP---ARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
GS+L+ P PP A +K C C S ++T+++PYVFRY AE
Sbjct: 1074 GSLLSPLLEKP-----------PPSWSALRNRKYICALCNRSDTIDTISLPYVFRYFVAE 1122
Query: 1114 LAAMNIKITLQL 1125
LAAMNIK+ L +
Sbjct: 1123 LAAMNIKVKLDI 1134
Score = 68 (29.0 bits), Expect = 5.8e-233, Sum P(3) = 5.8e-233
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 12 LRELVRHHIESFDYMLDEGLS 32
L+EL R H+ESF+Y + EGLS
Sbjct: 35 LQELTRAHVESFNYAVREGLS 55
Score = 39 (18.8 bits), Expect = 2.7e-137, Sum P(3) = 2.7e-137
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIR-DFSKMRTSILRVLIG--VGMIPS 504
+ P P G C LN + CR S Y RG + D S I + +I +G +P
Sbjct: 82 ISPPAVPKGSICKELNVYPAECRGRRSTY--RGKLTADISWSVNGISKGVIKQFLGYVPI 139
Query: 505 LPK 507
+ K
Sbjct: 140 MVK 142
>UNIPROTKB|F5GZX4 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0005730 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00418797 Ensembl:ENST00000541869 ArrayExpress:F5GZX4
Bgee:F5GZX4 Uniprot:F5GZX4
Length = 1173
Score = 1271 (452.5 bits), Expect = 7.3e-233, Sum P(3) = 7.3e-233
Identities = 269/551 (48%), Positives = 346/551 (62%)
Query: 519 VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPGLYLFTS 577
VLLDG +VG + + LR KV IP +EV +P++ YPGL+LFT+
Sbjct: 594 VLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTT 653
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
P + VRPV+N++L EE LIG EQ+FM + + A TH+E+ P +
Sbjct: 654 PCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPHSL 704
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+VR +
Sbjct: 705 LSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSM 764
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDLS+
Sbjct: 765 YDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIK 824
Query: 758 KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE 817
+ D + D + L +D DGLP++G + G+PY S + T K E
Sbjct: 825 QGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKE 883
Query: 818 SVFVDYVAVDMKNSKNLPQKAN-IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+LWP DMPF+
Sbjct: 884 NCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFT 943
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
+GM PD++ NPH FPSRMTI ML+ES+A K +LHG DATPF S
Sbjct: 944 E-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS----------- 991
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S ++ GEML+ G+N++G E LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 992 EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVR 1051
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA VC C
Sbjct: 1052 TTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 1111
Query: 1057 GSVLTATFIHP 1067
GS+L+ P
Sbjct: 1112 GSLLSPLLEKP 1122
Score = 950 (339.5 bits), Expect = 7.3e-233, Sum P(3) = 7.3e-233
Identities = 216/541 (39%), Positives = 314/541 (58%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L+ Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 173 GYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 232
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 233 RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 292
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L K K++ + + VS+ ++I++ E +T+ Q L ++
Sbjct: 293 ALVSFSDYQIFQELI-----KGKEDDSFLRNS-VSQMLRIVMEE----GCSTQKQVLNYL 342
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ ++ AE + I +HL N +KF +L M +KLF+L + D
Sbjct: 343 GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 402
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L PG L ++LKEKLE WL K + + + NL I M
Sbjct: 403 NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIF-TMG 461
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+ +K E + TG L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA
Sbjct: 462 IDLTKPF----EYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 517
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + + +I
Sbjct: 518 KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------P 569
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
L +GV I P S VLLDG +VG + + LR KV
Sbjct: 570 ALLCNLGVTPIDGAPHRSYS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKR 626
Query: 552 IPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
IP +EV +P++ YPGL+LFT+P + VRPV+N++L EE LIG EQ+FM
Sbjct: 627 IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMN 681
Query: 611 I 611
+
Sbjct: 682 V 682
Score = 545 (196.9 bits), Expect = 4.1e-190, Sum P(3) = 4.1e-190
Identities = 119/329 (36%), Positives = 189/329 (57%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y GKL AD+ + ++++ F G P+M+K++ C+L+ Q L+
Sbjct: 141 CRGRRSTYRGKLTADINWAVNGISKGIIKQ-F-LGYVPIMVKSKLCNLRNLPPQALIEHH 198
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V + CVR++ S
Sbjct: 199 EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHS 258
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L K K++
Sbjct: 259 AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI-----KGKEDD 313
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ + VS+ ++I++ E +T+ Q L ++GE F+ ++ AE +
Sbjct: 314 SFLRNS-VSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQ 368
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L ++LKEKLE
Sbjct: 369 CICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLE 428
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANI 366
WL K + + + NL I
Sbjct: 429 GWLVSIKIAFDKKAQKTSVSMNTDNLMRI 457
Score = 478 (173.3 bits), Expect = 3.4e-149, Sum P(3) = 3.4e-149
Identities = 99/192 (51%), Positives = 122/192 (63%)
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S ++ GEML+ G+N++G E LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 992 EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVR 1051
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA VC C
Sbjct: 1052 TTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 1111
Query: 1057 GSVLTATFIHPQKRAIREIGGLPP---ARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
GS+L+ P PP A +K C C S ++TV++PYVFRY AE
Sbjct: 1112 GSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAE 1160
Query: 1114 LAAMNIKITLQL 1125
LAAMNIK+ L +
Sbjct: 1161 LAAMNIKVKLDV 1172
Score = 65 (27.9 bits), Expect = 7.3e-233, Sum P(3) = 7.3e-233
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 12 LRELVRHHIESFDYMLDEGL 31
L+EL R H+ESF+Y + EGL
Sbjct: 73 LQELTRAHVESFNYAVHEGL 92
>UNIPROTKB|Q9H9Y6 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase I subunit RPA2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
EMBL:AC012442 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 EMBL:AK022533 EMBL:AK022890
EMBL:AK128044 IPI:IPI00026445 IPI:IPI01010348 RefSeq:NP_001131076.1
RefSeq:NP_061887.2 UniGene:Hs.741552 ProteinModelPortal:Q9H9Y6
SMR:Q9H9Y6 DIP:DIP-27538N IntAct:Q9H9Y6 MINT:MINT-4727878
STRING:Q9H9Y6 PhosphoSite:Q9H9Y6 DMDM:92090637 SWISS-2DPAGE:Q9H9Y6
PaxDb:Q9H9Y6 PRIDE:Q9H9Y6 Ensembl:ENST00000263331
Ensembl:ENST00000417433 GeneID:84172 KEGG:hsa:84172 UCSC:uc002thw.2
UCSC:uc010fkn.2 CTD:84172 GeneCards:GC02P113299 H-InvDB:HIX0002380
HGNC:HGNC:20454 HPA:HPA037528 MIM:602000 neXtProt:NX_Q9H9Y6
PharmGKB:PA130601182 HOVERGEN:HBG017742 InParanoid:Q9H9Y6
OrthoDB:EOG4H9XJP PhylomeDB:Q9H9Y6 GenomeRNAi:84172 NextBio:73536
ArrayExpress:Q9H9Y6 Bgee:Q9H9Y6 CleanEx:HS_POLR1B
Genevestigator:Q9H9Y6 GermOnline:ENSG00000125630 GO:GO:0017126
Gene3D:2.40.50.150 Uniprot:Q9H9Y6
Length = 1135
Score = 1271 (452.5 bits), Expect = 7.3e-233, Sum P(3) = 7.3e-233
Identities = 269/551 (48%), Positives = 346/551 (62%)
Query: 519 VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPGLYLFTS 577
VLLDG +VG + + LR KV IP +EV +P++ YPGL+LFT+
Sbjct: 556 VLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTT 615
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
P + VRPV+N++L EE LIG EQ+FM + + A TH+E+ P +
Sbjct: 616 PCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPHSL 666
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+VR +
Sbjct: 667 LSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSM 726
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDLS+
Sbjct: 727 YDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIK 786
Query: 758 KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE 817
+ D + D + L +D DGLP++G + G+PY S + T K E
Sbjct: 787 QGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKE 845
Query: 818 SVFVDYVAVDMKNSKNLPQKAN-IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+LWP DMPF+
Sbjct: 846 NCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFT 905
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
+GM PD++ NPH FPSRMTI ML+ES+A K +LHG DATPF S
Sbjct: 906 E-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS----------- 953
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S ++ GEML+ G+N++G E LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 954 EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVR 1013
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA VC C
Sbjct: 1014 TTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 1073
Query: 1057 GSVLTATFIHP 1067
GS+L+ P
Sbjct: 1074 GSLLSPLLEKP 1084
Score = 950 (339.5 bits), Expect = 7.3e-233, Sum P(3) = 7.3e-233
Identities = 216/541 (39%), Positives = 314/541 (58%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L+ Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 135 GYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 194
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 195 RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 254
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L K K++ + + VS+ ++I++ E +T+ Q L ++
Sbjct: 255 ALVSFSDYQIFQELI-----KGKEDDSFLRNS-VSQMLRIVMEE----GCSTQKQVLNYL 304
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ ++ AE + I +HL N +KF +L M +KLF+L + D
Sbjct: 305 GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 364
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L PG L ++LKEKLE WL K + + + NL I M
Sbjct: 365 NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIF-TMG 423
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+ +K E + TG L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA
Sbjct: 424 IDLTKPF----EYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 479
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + + +I
Sbjct: 480 KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------P 531
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
L +GV I P S VLLDG +VG + + LR KV
Sbjct: 532 ALLCNLGVTPIDGAPHRSYS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKR 588
Query: 552 IPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
IP +EV +P++ YPGL+LFT+P + VRPV+N++L EE LIG EQ+FM
Sbjct: 589 IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMN 643
Query: 611 I 611
+
Sbjct: 644 V 644
Score = 545 (196.9 bits), Expect = 4.1e-190, Sum P(3) = 4.1e-190
Identities = 119/329 (36%), Positives = 189/329 (57%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y GKL AD+ + ++++ F G P+M+K++ C+L+ Q L+
Sbjct: 103 CRGRRSTYRGKLTADINWAVNGISKGIIKQ-F-LGYVPIMVKSKLCNLRNLPPQALIEHH 160
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V + CVR++ S
Sbjct: 161 EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHS 220
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L K K++
Sbjct: 221 AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI-----KGKEDD 275
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ + VS+ ++I++ E +T+ Q L ++GE F+ ++ AE +
Sbjct: 276 SFLRNS-VSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQ 330
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L ++LKEKLE
Sbjct: 331 CICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLE 390
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANI 366
WL K + + + NL I
Sbjct: 391 GWLVSIKIAFDKKAQKTSVSMNTDNLMRI 419
Score = 478 (173.3 bits), Expect = 3.4e-149, Sum P(3) = 3.4e-149
Identities = 99/192 (51%), Positives = 122/192 (63%)
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S ++ GEML+ G+N++G E LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 954 EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVR 1013
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA VC C
Sbjct: 1014 TTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 1073
Query: 1057 GSVLTATFIHPQKRAIREIGGLPP---ARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
GS+L+ P PP A +K C C S ++TV++PYVFRY AE
Sbjct: 1074 GSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAE 1122
Query: 1114 LAAMNIKITLQL 1125
LAAMNIK+ L +
Sbjct: 1123 LAAMNIKVKLDV 1134
Score = 65 (27.9 bits), Expect = 7.3e-233, Sum P(3) = 7.3e-233
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 12 LRELVRHHIESFDYMLDEGL 31
L+EL R H+ESF+Y + EGL
Sbjct: 35 LQELTRAHVESFNYAVHEGL 54
>ASPGD|ASPL0000012082 [details] [associations]
symbol:AN3933 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:BN001302 EMBL:AACD01000064
GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222963
OrthoDB:EOG4W11N4 OMA:FNLLIFM RefSeq:XP_661537.1 STRING:Q5B697
EnsemblFungi:CADANIAT00004761 GeneID:2873357 KEGG:ani:AN3933.2
Uniprot:Q5B697
Length = 1231
Score = 2163 (766.5 bits), Expect = 5.8e-231, Sum P(3) = 5.8e-231
Identities = 473/1055 (44%), Positives = 663/1055 (62%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y GKL A +E++ + + VRE GQ P+ML+T RC+L+ A +LV
Sbjct: 128 CRERHATYRGKLRAKIEYRVNNGDWTEQVRE---LGQVPIMLRTNRCYLEKATPAELVQH 184
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG E++ R +I+ ++NYPM++VR++F +R Y+ + IR VR DQ
Sbjct: 185 KEESEELGGYFIVNGNEKLIRMLIVGRRNYPMAIVRNTFTNRGHAYSKFGIQIRSVRPDQ 244
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EY++PV ++LKALV+TND EIF + +
Sbjct: 245 TSQTNVLHYLNDGNVTFRFSWRKNEYIIPVVMILKALVETNDREIFEGIVGSASSE---- 300
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET-VI 275
+ + V++RV+++L + L +R +C IGE F+PV+ G+ +++ A T +
Sbjct: 301 --GINNTFVTDRVELLLRTYKAYKLHSRSECRAFIGEKFKPVL-GVPADTPNEEAGTEFL 357
Query: 276 RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + N DKF +L+FM++KL++LV DNPD++ NQEILL G L
Sbjct: 358 RKVVLPHLGNQNVTETQDYDKFKMLMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKF-DFFNLANIKKVMEKNPSKQIGTSIETML 386
+ LKE+L++W+R +++D N+G +F D + + + ++ IG ++E L
Sbjct: 418 GMLLKERLDEWVRSFGPILRDWSNRNHGARFTDPAFERDFVSKVIRRSNENIGGAMEYFL 477
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPESW
Sbjct: 478 STGNLVSPTGLDLQQTSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESW 537
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
GFLCPVHTPDG PCGLLNH+ C VA+ S ++ K L V +GV S+
Sbjct: 538 GFLCPVHTPDGSPCGLLNHLAHKCLVAT---SDTDVSHLPK-----LLVQLGVRNESSV- 588
Query: 507 KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG 566
L +S ++V LDGR++G + + + LR KVS + +P LE+GYVP S G
Sbjct: 589 SLDES-----VTVQLDGRIIGYCSPKQARVIASTLRHWKVSGTNNVPLGLEIGYVPNSNG 643
Query: 567 GAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAF 625
G YPG+Y+F+ + RPV+ + L ++ +GPFEQ FMEI C P G
Sbjct: 644 GQYPGIYMFSQAARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACLPSDLVKGL---- 694
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
+TH E PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG A+ +R D KLY L
Sbjct: 695 -STHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRTDNKLYRL 753
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
QT QTPIVR Y YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG +G +Y
Sbjct: 754 QTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGTVY 813
Query: 746 QTETIDLSDDGNKVDRG----QKLF--RRNKDAKS-LHSVIDSDGLPYVGQMIHPGE--- 795
+T+ L + ++ + QKLF + ++ + +D DG P++G I G
Sbjct: 814 KTKVHSLDEKDSRRTKSKQAVQKLFGFAPGSEIRAEWRATLDEDGFPHIGAEIKEGSIVA 873
Query: 796 PYCSI-YDKTTNSWR-----TN--SRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTR 846
Y ++ YD T++S+ T+ K SE ++D + + + P +A ++++R R
Sbjct: 874 AYHTVRYDATSDSYINVDGITHFVKYKDSERAYIDSIRIMGSETGTEPAQAISVKYRIPR 933
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
PIIGDKFSSRHGQKGVCSQLWP +DMPFS +G++PDLIINPHAFPSRMTIA ++ES+A
Sbjct: 934 KPIIGDKFSSRHGQKGVCSQLWPAVDMPFSE-SGIQPDLIINPHAFPSRMTIAQMIESMA 992
Query: 907 AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
K G+LHG D TPF S E + D GE LR G+NY+G E LYSG+
Sbjct: 993 GKAGALHGHPQDCTPFQFS-----------EEYTATDYFGEQLRRAGYNYYGNEPLYSGI 1041
Query: 967 YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERD 1026
G E +IFIG V+YQRLRHMV+DKFQVR+TG ++ +T QP GEMERD
Sbjct: 1042 TGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNNLTGQPVKGRAKGGGIRVGEMERD 1101
Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
SL+AHGAAY+L DRL CSD A +C CGS L+
Sbjct: 1102 SLIAHGAAYILQDRLMNCSDSQRAWICRDCGSFLS 1136
Score = 61 (26.5 bits), Expect = 5.8e-231, Sum P(3) = 5.8e-231
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
VA+P V RYL ELAAM I++ ++
Sbjct: 1205 VAVPGVLRYLDVELAAMGIRMKFRV 1229
Score = 44 (20.5 bits), Expect = 5.8e-231, Sum P(3) = 5.8e-231
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 5 KSADFEPLRELVRHHIESFDYMLDEG 30
K+A + L E ++ H++SF+ + ++G
Sbjct: 30 KTA-YPSLAESIKPHVDSFNALFEKG 54
>UNIPROTKB|F5H643 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04565 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0005730 GO:GO:0003677 GO:GO:0009790 GO:GO:0009303
GO:GO:0007566 EMBL:AC012442 GO:GO:0005736 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 GO:GO:0017126
Gene3D:2.40.50.150 IPI:IPI01013053 ProteinModelPortal:F5H643
Ensembl:ENST00000537335 ArrayExpress:F5H643 Bgee:F5H643
Uniprot:F5H643
Length = 924
Score = 1271 (452.5 bits), Expect = 6.1e-207, Sum P(2) = 6.1e-207
Identities = 269/551 (48%), Positives = 346/551 (62%)
Query: 519 VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPGLYLFTS 577
VLLDG +VG + + LR KV IP +EV +P++ YPGL+LFT+
Sbjct: 345 VLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTT 404
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
P + VRPV+N++L EE LIG EQ+FM + + A TH+E+ P +
Sbjct: 405 PCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPHSL 455
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+VR +
Sbjct: 456 LSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSM 515
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDLS+
Sbjct: 516 YDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIK 575
Query: 758 KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE 817
+ D + D + L +D DGLP++G + G+PY S + T K E
Sbjct: 576 QGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKE 634
Query: 818 SVFVDYVAVDMKNSKNLPQKAN-IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+LWP DMPF+
Sbjct: 635 NCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFT 694
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
+GM PD++ NPH FPSRMTI ML+ES+A K +LHG DATPF S
Sbjct: 695 E-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS----------- 742
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S ++ GEML+ G+N++G E LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 743 EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVR 802
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA VC C
Sbjct: 803 TTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 862
Query: 1057 GSVLTATFIHP 1067
GS+L+ P
Sbjct: 863 GSLLSPLLEKP 873
Score = 753 (270.1 bits), Expect = 6.1e-207, Sum P(2) = 6.1e-207
Identities = 182/464 (39%), Positives = 260/464 (56%)
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
+ CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 1 MHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI-- 58
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
K K++ + + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 59 ---KGKEDDSFLRNS-VSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNE 110
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 111 QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLF 170
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
++LKEKLE WL K + + + NL I M + +K E + T
Sbjct: 171 LMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIF-TMGIDLTKPF----EYLFAT 225
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 226 GNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 285
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
LCPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 286 LCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHR 337
Query: 509 VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGG 567
S VLLDG +VG + + LR KV IP +EV +P++
Sbjct: 338 SYS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPS 394
Query: 568 AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
YPGL+LFT+P + VRPV+N++L EE LIG EQ+FM +
Sbjct: 395 LYPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNV 433
Score = 478 (173.3 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
Identities = 99/192 (51%), Positives = 122/192 (63%)
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S ++ GEML+ G+N++G E LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 743 EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVR 802
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA VC C
Sbjct: 803 TTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 862
Query: 1057 GSVLTATFIHPQKRAIREIGGLPP---ARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
GS+L+ P PP A +K C C S ++TV++PYVFRY AE
Sbjct: 863 GSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAE 911
Query: 1114 LAAMNIKITLQL 1125
LAAMNIK+ L +
Sbjct: 912 LAAMNIKVKLDV 923
>RGD|620822 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005736 "DNA-directed RNA polymerase
I complex" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0007566 "embryo implantation"
evidence=IEA;ISO] [GO:0009303 "rRNA transcription"
evidence=IEA;ISO;IDA] [GO:0009790 "embryo development"
evidence=IEA;ISO] [GO:0017126 "nucleologenesis" evidence=IEA;ISO]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 1095 (390.5 bits), Expect = 2.7e-203, Sum P(3) = 2.7e-203
Identities = 221/435 (50%), Positives = 282/435 (64%)
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
P+ V+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+V
Sbjct: 663 PSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLV 722
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
R Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDLS
Sbjct: 723 RPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLS 782
Query: 754 DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
+ + D + D + + +D+DGLP++G + G+PY + T
Sbjct: 783 EKFKQGDDSLVFGVKPGDPRVMQK-LDNDGLPFIGAKLEFGDPYYGYLNLNTGEGFVVYY 841
Query: 814 KGSESVFVDYVAVDMKNSKNLPQKAN-IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
K E+ VD + V ++ + K + R RNP IGDKF+SRHGQKG+ S+LWP D
Sbjct: 842 KSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKFASRHGQKGILSRLWPAED 901
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
MPF+ +GM PD++ NPH FPSRMTI ML+ES+A K +LHG DATPF S
Sbjct: 902 MPFTE-SGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS------- 953
Query: 933 TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
E S ++ GEML+ G+N++G E LYSG+ G EL +IFIG VYYQRLRHMVSDK
Sbjct: 954 ----EENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDK 1009
Query: 993 FQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
FQVR+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA V
Sbjct: 1010 FQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHV 1069
Query: 1053 CSLCGSVLTATFIHP 1067
C CGS+L+ P
Sbjct: 1070 CVKCGSLLSPLLEKP 1084
Score = 851 (304.6 bits), Expect = 2.7e-203, Sum P(3) = 2.7e-203
Identities = 194/480 (40%), Positives = 279/480 (58%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 135 GXVPIMVKSKLCNLYNLPPQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 194
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V I CVR++ S+V + L+Y+ NG+V L F + + + LP+G LK
Sbjct: 195 RPKWKSRGLGYTQFGVSIHCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALK 254
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L K K+E + VS+ ++I++ E T+ Q L ++
Sbjct: 255 ALVSFSDYQIFQELI-----KGKEEDSFFKNS-VSQMLRIVMEE----GCHTQKQVLDYL 304
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ + AE + I +HL N DKF LL M +KLF+L + D
Sbjct: 305 GERFRVKLSLPDWYPNAEAAEFLFNQCICIHLKSNTDKFYLLCLMTRKLFALARGECMED 364
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVM 370
NPDSL NQE+L PG L ++LKEK+E+WL I+ ++ +K + N N+ K+
Sbjct: 365 NPDSLVNQEVLTPGQLFLMFLKEKMENWLLS----IKIALDKRAQKTNVSINNENLMKIF 420
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
++ E +L TG L ++TGL Q +G V A++LNF+R++S FR VHRGA F
Sbjct: 421 SMGT--ELTRPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADF 478
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
A +RTT+VRKLLPESWGFLCPVHTPDG PCGLLNH+T+ C V + +
Sbjct: 479 AKMRTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKF----------VYTA 528
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
SI +L G+G+ P V + P S VLLDG +VG + +V LRR KV
Sbjct: 529 SIPALLCGLGVTP-----VDAAPCRPYSDCYPVLLDGVMVGWVDKELAPEVADTLRRFKV 583
Score = 544 (196.6 bits), Expect = 6.5e-171, Sum P(3) = 6.5e-171
Identities = 121/329 (36%), Positives = 186/329 (56%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y GKL AD+ + ++++ F G P+M+K++ C+L Q L+
Sbjct: 103 CRGRRSTYRGKLTADISWAVNGVPKGIIKQ-F-LGXVPIMVKSKLCNLYNLPPQVLIEHH 160
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V I CVR++ S
Sbjct: 161 EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYTQFGVSIHCVREEHS 220
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+Y+ NG+V L F + + + LP+G LKALV +D +IF L K K+E
Sbjct: 221 AVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI-----KGKEED 275
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ VS+ ++I++ E T+ Q L ++GE F+ + AE +
Sbjct: 276 SFFKNS-VSQMLRIVMEE----GCHTQKQVLDYLGERFRVKLSLPDWYPNAEAAEFLFNQ 330
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL N DKF LL M +KLF+L + DNPDSL NQE+L PG L ++LKEK+E
Sbjct: 331 CICIHLKSNTDKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFLMFLKEKME 390
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANI 366
+WL K + + + NL I
Sbjct: 391 NWLLSIKIALDKRAQKTNVSINNENLMKI 419
Score = 479 (173.7 bits), Expect = 2.4e-138, Sum P(3) = 2.4e-138
Identities = 99/192 (51%), Positives = 122/192 (63%)
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S ++ GEML+ G+N++G E LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 954 EENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVR 1013
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA VC C
Sbjct: 1014 TTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 1073
Query: 1057 GSVLTATFIHPQKRAIREIGGLPP---ARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
GS+L+ P PP A +K C C S ++TV++PYVFRY AE
Sbjct: 1074 GSLLSPLLEKP-----------PPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAE 1122
Query: 1114 LAAMNIKITLQL 1125
LAAMNIK+ L +
Sbjct: 1123 LAAMNIKVKLDV 1134
Score = 60 (26.2 bits), Expect = 2.7e-203, Sum P(3) = 2.7e-203
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 12 LRELVRHHIESFDYMLDEGLS 32
L++L R H++SF+Y + EGLS
Sbjct: 35 LQDLTRAHVDSFNYAVLEGLS 55
Score = 38 (18.4 bits), Expect = 1.3e-117, Sum P(3) = 1.3e-117
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIR-DFSKMRTSILRVLIGVGMIPSLP 506
+ P P G C LN + CR S Y RG + D S + + +I + +P
Sbjct: 82 ISPPAVPKGTICKELNIYPAECRGRRSTY--RGKLTADISWAVNGVPKGIIKQ-FLGXVP 138
Query: 507 KLVKS 511
+VKS
Sbjct: 139 IMVKS 143
Score = 38 (18.4 bits), Expect = 4.1e-41, Sum P(4) = 4.1e-41
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 912 LHGKFMDATPFANSVKKTNG---DTGTDESKSLVDELGEMLR 950
+ GK D+ F NSV + + G K ++D LGE R
Sbjct: 269 IKGKEEDSF-FKNSVSQMLRIVMEEGCHTQKQVLDYLGERFR 309
>UNIPROTKB|O54888 [details] [associations]
symbol:Polr1b "DNA-directed RNA polymerase I subunit RPA2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 1095 (390.5 bits), Expect = 2.7e-203, Sum P(3) = 2.7e-203
Identities = 221/435 (50%), Positives = 282/435 (64%)
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
P+ V+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+V
Sbjct: 663 PSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLV 722
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
R Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDLS
Sbjct: 723 RPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLS 782
Query: 754 DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
+ + D + D + + +D+DGLP++G + G+PY + T
Sbjct: 783 EKFKQGDDSLVFGVKPGDPRVMQK-LDNDGLPFIGAKLEFGDPYYGYLNLNTGEGFVVYY 841
Query: 814 KGSESVFVDYVAVDMKNSKNLPQKAN-IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
K E+ VD + V ++ + K + R RNP IGDKF+SRHGQKG+ S+LWP D
Sbjct: 842 KSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKFASRHGQKGILSRLWPAED 901
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
MPF+ +GM PD++ NPH FPSRMTI ML+ES+A K +LHG DATPF S
Sbjct: 902 MPFTE-SGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS------- 953
Query: 933 TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
E S ++ GEML+ G+N++G E LYSG+ G EL +IFIG VYYQRLRHMVSDK
Sbjct: 954 ----EENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDK 1009
Query: 993 FQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
FQVR+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA V
Sbjct: 1010 FQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHV 1069
Query: 1053 CSLCGSVLTATFIHP 1067
C CGS+L+ P
Sbjct: 1070 CVKCGSLLSPLLEKP 1084
Score = 851 (304.6 bits), Expect = 2.7e-203, Sum P(3) = 2.7e-203
Identities = 194/480 (40%), Positives = 279/480 (58%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 135 GXVPIMVKSKLCNLYNLPPQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 194
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V I CVR++ S+V + L+Y+ NG+V L F + + + LP+G LK
Sbjct: 195 RPKWKSRGLGYTQFGVSIHCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALK 254
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L K K+E + VS+ ++I++ E T+ Q L ++
Sbjct: 255 ALVSFSDYQIFQELI-----KGKEEDSFFKNS-VSQMLRIVMEE----GCHTQKQVLDYL 304
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ + AE + I +HL N DKF LL M +KLF+L + D
Sbjct: 305 GERFRVKLSLPDWYPNAEAAEFLFNQCICIHLKSNTDKFYLLCLMTRKLFALARGECMED 364
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVM 370
NPDSL NQE+L PG L ++LKEK+E+WL I+ ++ +K + N N+ K+
Sbjct: 365 NPDSLVNQEVLTPGQLFLMFLKEKMENWLLS----IKIALDKRAQKTNVSINNENLMKIF 420
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
++ E +L TG L ++TGL Q +G V A++LNF+R++S FR VHRGA F
Sbjct: 421 SMGT--ELTRPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADF 478
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
A +RTT+VRKLLPESWGFLCPVHTPDG PCGLLNH+T+ C V + +
Sbjct: 479 AKMRTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKF----------VYTA 528
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
SI +L G+G+ P V + P S VLLDG +VG + +V LRR KV
Sbjct: 529 SIPALLCGLGVTP-----VDAAPCRPYSDCYPVLLDGVMVGWVDKELAPEVADTLRRFKV 583
Score = 544 (196.6 bits), Expect = 6.5e-171, Sum P(3) = 6.5e-171
Identities = 121/329 (36%), Positives = 186/329 (56%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y GKL AD+ + ++++ F G P+M+K++ C+L Q L+
Sbjct: 103 CRGRRSTYRGKLTADISWAVNGVPKGIIKQ-F-LGXVPIMVKSKLCNLYNLPPQVLIEHH 160
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V I CVR++ S
Sbjct: 161 EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYTQFGVSIHCVREEHS 220
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+Y+ NG+V L F + + + LP+G LKALV +D +IF L K K+E
Sbjct: 221 AVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI-----KGKEED 275
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ VS+ ++I++ E T+ Q L ++GE F+ + AE +
Sbjct: 276 SFFKNS-VSQMLRIVMEE----GCHTQKQVLDYLGERFRVKLSLPDWYPNAEAAEFLFNQ 330
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL N DKF LL M +KLF+L + DNPDSL NQE+L PG L ++LKEK+E
Sbjct: 331 CICIHLKSNTDKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFLMFLKEKME 390
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANI 366
+WL K + + + NL I
Sbjct: 391 NWLLSIKIALDKRAQKTNVSINNENLMKI 419
Score = 479 (173.7 bits), Expect = 2.4e-138, Sum P(3) = 2.4e-138
Identities = 99/192 (51%), Positives = 122/192 (63%)
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S ++ GEML+ G+N++G E LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 954 EENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVR 1013
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA VC C
Sbjct: 1014 TTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 1073
Query: 1057 GSVLTATFIHPQKRAIREIGGLPP---ARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
GS+L+ P PP A +K C C S ++TV++PYVFRY AE
Sbjct: 1074 GSLLSPLLEKP-----------PPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAE 1122
Query: 1114 LAAMNIKITLQL 1125
LAAMNIK+ L +
Sbjct: 1123 LAAMNIKVKLDV 1134
Score = 60 (26.2 bits), Expect = 2.7e-203, Sum P(3) = 2.7e-203
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 12 LRELVRHHIESFDYMLDEGLS 32
L++L R H++SF+Y + EGLS
Sbjct: 35 LQDLTRAHVDSFNYAVLEGLS 55
Score = 38 (18.4 bits), Expect = 1.3e-117, Sum P(3) = 1.3e-117
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIR-DFSKMRTSILRVLIGVGMIPSLP 506
+ P P G C LN + CR S Y RG + D S + + +I + +P
Sbjct: 82 ISPPAVPKGTICKELNIYPAECRGRRSTY--RGKLTADISWAVNGVPKGIIKQ-FLGXVP 138
Query: 507 KLVKS 511
+VKS
Sbjct: 139 IMVKS 143
Score = 38 (18.4 bits), Expect = 4.1e-41, Sum P(4) = 4.1e-41
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 912 LHGKFMDATPFANSVKKTNG---DTGTDESKSLVDELGEMLR 950
+ GK D+ F NSV + + G K ++D LGE R
Sbjct: 269 IKGKEEDSF-FKNSVSQMLRIVMEEGCHTQKQVLDYLGERFR 309
>POMBASE|SPBP23A10.07 [details] [associations]
symbol:rpa2 "DNA-directed RNA polymerase I complex
subunit Rpa2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=ISO] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISO] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PomBase:SPBP23A10.07 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
OMA:EVFAGVT GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222963 PIR:T50394 RefSeq:NP_595819.2 STRING:Q9P7X8
EnsemblFungi:SPBP23A10.07.1 GeneID:2541280 KEGG:spo:SPBP23A10.07
OrthoDB:EOG4W11N4 NextBio:20802391 Uniprot:Q9P7X8
Length = 1174
Score = 1900 (673.9 bits), Expect = 4.1e-199, Sum P(2) = 4.1e-199
Identities = 417/943 (44%), Positives = 583/943 (61%)
Query: 220 VGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYI 279
+G+ +++RV+++L + L ++ + LQ++G F+ V+ + + V +++ +
Sbjct: 276 LGNTFLTDRVELMLRAYKSYGLYSQTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQKVV 335
Query: 280 FVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDW 339
VHL + DKF LL+FM++KL++LV +DNPDS Q+QEILL G L LKEK+EDW
Sbjct: 336 LVHLREAKDKFRLLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDW 395
Query: 340 LRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDL 399
L + I ++ + DF + + +V K + IGT ++ L TG L + TGLDL
Sbjct: 396 LNSIRAQINLDVRRSAPGVDFSDRKYLTRVFSKI-NNDIGTKLQYFLSTGNLVSNTGLDL 454
Query: 400 QQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEP 459
QQ GYTV AE+LNF RF+S FR VHRGA FA L+TT+VRKLLPE+WGF+CPVHTPDG P
Sbjct: 455 QQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSP 514
Query: 460 CGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV--KSGPPAVL 517
CGLLNH+ C + ++ D S++ + +L+ +G+ P P +V +SG V
Sbjct: 515 CGLLNHLARKCEIVTHPS------DVSQIPS----LLLSLGVDP--PSVVGHESGWGCVQ 562
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAA-----------SVIPDDLEVGYVPLSLG 566
LDG++VG + V LR +K+ A + +P DLE+GYVP S
Sbjct: 563 ---LDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAKVPLDLEIGYVPPSHN 619
Query: 567 GAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAF 625
G YPGLYLF++P + VRPV++IS + ++++GPFEQV+M+I C P +
Sbjct: 620 GQYPGLYLFSNPARMVRPVKHIS-----TGELDMLGPFEQVYMDIACFP-------KEIV 667
Query: 626 P--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
P +TH E PT +LS+VAN+TP+SD NQSPRNMYQCQM KQTMG AL++R D KLY
Sbjct: 668 PKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRTDNKLY 727
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQT QTP+VR + YG+D YP GTNA+VAV++YTGYDMEDAMILNKS+ +RG +G
Sbjct: 728 RLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGT 787
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRR------NKDAKSLHSVIDSDGLPYVGQMIHPGEPY 797
+Y+ E+ DLS K RG+ + + + +D+DGLP++G + G+P
Sbjct: 788 VYKGESFDLSQ---KRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPFIGIKLEDGDPI 844
Query: 798 CSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKF 854
+ YD++T + G+E FVD V + D+ +S+ Q+ +++ R TR+PIIGDKF
Sbjct: 845 VAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDSEC--QQIHVKLRITRSPIIGDKF 902
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
SSRHGQKG+CSQ WP +DMPF+ +GM+PD+IINPHAFPSRMTI M +ES+A K G+ HG
Sbjct: 903 SSRHGQKGICSQKWPTVDMPFTE-SGMQPDIIINPHAFPSRMTIGMFIESLAGKAGACHG 961
Query: 915 KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
D+TPF S E ++ D GE L G+NYHG E +YSG+ G E+ +
Sbjct: 962 LAQDSTPFIYS-----------EQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEMKAD 1010
Query: 975 IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAA 1034
I+IG VYYQRLRHMVSDKFQVR+TG + +TRQP FGEMERD+++ HG +
Sbjct: 1011 IYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTS 1070
Query: 1035 YLLHDRLHTCSDYHVADVCSLCGSVLT--ATFIHPQKRAIREIGGLPPARAPKKV--TCH 1090
+L+ DRL CSDY + VC CGS+++ +T + E+ A+ + T
Sbjct: 1071 FLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSCAKPALGLEDTSD 1130
Query: 1091 ACQTSKGMETV--------AMPYVFRYLAAELAAMNIKITLQL 1125
Q G + V A+P VF YL AEL AMNIK+ L++
Sbjct: 1131 IWQDGSGKKFVGGTNTTLIALPSVFNYLTAELTAMNIKMMLEV 1173
Score = 1028 (366.9 bits), Expect = 5.7e-107, Sum P(2) = 5.7e-107
Identities = 224/555 (40%), Positives = 332/555 (59%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
R+ +Y +L+ ++F + G P E G P+M+++ RCHL+G +L++ KE
Sbjct: 107 RERLTTYKSRLV--LKFSWSVNGGPRQSEMREVGMIPIMVRSNRCHLEGLSPAELIAHKE 164
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ EMGGYFI+NG+E++ R +ILPK+N+P +++R SF +R Y+ + IRCVR DQSS
Sbjct: 165 ESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSS 224
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
+T L+YL NG F + EYL+P ++LKAL++T+D EIF + K+
Sbjct: 225 LTNTLHYLNNGVTMFRFHWRKNEYLIPSMMILKALLETSDKEIFEGIV-------GKD-- 275
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDY 278
+G+ +++RV+++L + L ++ + LQ++G F+ V+ + + V +++
Sbjct: 276 -LGNTFLTDRVELMLRAYKSYGLYSQTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQKV 334
Query: 279 IFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLED 338
+ VHL + DKF LL+FM++KL++LV +DNPDS Q+QEILL G L LKEK+ED
Sbjct: 335 VLVHLREAKDKFRLLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIED 394
Query: 339 WLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLD 398
WL + I ++ + DF + + +V K + IGT ++ L TG L + TGLD
Sbjct: 395 WLNSIRAQINLDVRRSAPGVDFSDRKYLTRVFSKI-NNDIGTKLQYFLSTGNLVSNTGLD 453
Query: 399 LQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGE 458
LQQ GYTV AE+LNF RF+S FR VHRGA FA L+TT+VRKLLPE+WGF+CPVHTPDG
Sbjct: 454 LQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGS 513
Query: 459 PCGLLNHMTSTCRVASYYDSRGNIRDFSKMR----TSILRVLIGVGMIPSLPKLVKSGPP 514
PCGLLNH+ C + ++ I S++ G G + K+V
Sbjct: 514 PCGLLNHLARKCEIVTHPSDVSQIPSLLLSLGVDPPSVVGHESGWGCVQLDGKIV----- 568
Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
+ L V V+ +IE V LR + + +P DLE+GYVP S G YPGLYL
Sbjct: 569 GWCTYKLAKHVADVLRLMKIEYAVK-LRNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYL 627
Query: 575 FTSPPKFVRPVRNIS 589
F++P + VRPV++IS
Sbjct: 628 FSNPARMVRPVKHIS 642
Score = 50 (22.7 bits), Expect = 4.1e-199, Sum P(2) = 4.1e-199
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 4 KKSADFEPLRELVRHHIESFDYMLDEGL 31
K F L++ V+ H++SF+ + + GL
Sbjct: 17 KDGTSFPDLQKAVKPHVDSFNALTNAGL 44
>DICTYBASE|DDB_G0293560 [details] [associations]
symbol:rpa2 "RNA polymerase I, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 dictyBase:DDB_G0293560
PANTHER:PTHR20856 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 EMBL:AAFI02000218 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 RefSeq:XP_629008.1 HSSP:P08518 STRING:Q54BM1
PRIDE:Q54BM1 EnsemblProtists:DDB0216278 GeneID:8629292
KEGG:ddi:DDB_G0293560 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
ProtClustDB:CLSZ2728683 GO:GO:0032549 Gene3D:2.40.270.10
Uniprot:Q54BM1
Length = 1130
Score = 1788 (634.5 bits), Expect = 9.3e-189, Sum P(2) = 9.3e-189
Identities = 388/847 (45%), Positives = 523/847 (61%)
Query: 225 VSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN 284
+++RV++ L E + ++ T+ + L +IG F+ S S + I ++FVHL
Sbjct: 262 LTDRVELSLREQKINNINTQEEVLDYIGSRFRARTQFPPSFSNIKIGRWFINQFVFVHLP 321
Query: 285 DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGK 344
+ NDK+NLLI M+QKL+++V +DN DS QE+LL GH+ + LKEKL ++L K
Sbjct: 322 NYNDKYNLLILMIQKLYAMVGGKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTK 381
Query: 345 KLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAG 404
+ E+ K D A +KKV++KN +I L TG L + +G+DLQQ +G
Sbjct: 382 SFVLKSFEDKKKSGDKLPDA-LKKVLDKN--FKIADRFSYFLATGNLRSSSGIDLQQTSG 438
Query: 405 YTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLN 464
+ V A++LNFLRFIS FR++HRGA FA ++TT++RKL+PESWGF CPVHTPDG PCGLLN
Sbjct: 439 FCVIADKLNFLRFISHFRSIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLN 498
Query: 465 HMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGR 524
H++S C V D+ + K +T + L GM+P +V L++ LDGR
Sbjct: 499 HLSSNCLVT--VDAAQD-PTVQKAQTLLPSFLAAHGMLPI--DMVSVYQHQYLTITLDGR 553
Query: 525 VVGVIPSSEIEKVVAHLRRLK-VSAASVIPDDLEVGYVPLSL--GGAYPGLYLFTSPPKF 581
V+G I E++V LR L+ + IP +E+ Y P + G Y G+ LFT+ +F
Sbjct: 554 VLGKIEPKAGEEMVKMLRYLRSMGNEPSIPKTMEISYAPPTNVENGQYSGISLFTTGARF 613
Query: 582 VRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSV 640
+RPV N++ QN ELIGP EQ++MEI P G TH E PT M S+
Sbjct: 614 MRPVVNLT----SGQN-ELIGPQEQLYMEIAVVPHEVIKG-----VTTHIETSPTAMFSL 663
Query: 641 VANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTK 700
+ANLTP+SD+NQSPRNMYQCQMAKQTMG + + FR D KLY +Q Q PIV T K
Sbjct: 664 LANLTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFK 723
Query: 701 YGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVD 760
+ ++YP G NA++AV++ TGYDMEDAMI+NKS+ +RG HG +Y+ E IDL ++ +
Sbjct: 724 FRCNDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDQGLSRFE 783
Query: 761 RGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESV 819
+ + F R N L ID+DGLP+VG++I PGEPY + + T KG E
Sbjct: 784 QKKTFFGRPNTVVDELDKFIDTDGLPFVGRLIKPGEPYYTYIRPSDGRQVTKDYKGKEEA 843
Query: 820 FVDYVAVDM--KNSKNLPQKAN---IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
+++ V + + P K N ++ R RNP+IGDKFSSRHGQKGV SQLWP+I+MP
Sbjct: 844 YIEDVRIIFGPNGATRDPSKINNICVKLRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMP 903
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
F+ +GM+PD+IINP+AFPSRMTI ML+E +A K G++HGKF DAT F
Sbjct: 904 FTE-SGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGKFQDATAFQ----------- 951
Query: 935 TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
DE+ + +D GE L GFN G E +YSG G E CEIF G YYQRLRHMV DK+Q
Sbjct: 952 FDENNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHMVKDKYQ 1011
Query: 995 VRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
VR+ G ++ +TRQP FGEMERDSLLAHGA++ L+DRL SD+ VC
Sbjct: 1012 VRALGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMKSSDFAKIKVCK 1071
Query: 1055 LCGSVLT 1061
LCGS LT
Sbjct: 1072 LCGSTLT 1078
Score = 878 (314.1 bits), Expect = 7.2e-135, Sum P(3) = 7.2e-135
Identities = 196/528 (37%), Positives = 310/528 (58%)
Query: 70 NFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMS 129
+ G+ P+M+K+R CHL G +KL+ +EE E GGYFI+NG E+V R +++ K N+P++
Sbjct: 117 DLGRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVA 176
Query: 130 MVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV 189
+ R ++ +R GYT + IRCVR D+SS+T L+Y+ +G L F + +E+ LP ++
Sbjct: 177 LHRKAWTNRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFLPATLL 236
Query: 190 LKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQ 249
LKAL DT + EI+ ++ +G + +++RV++ L E + ++ T+ + L
Sbjct: 237 LKALKDTTEKEIYENIV----------QGDNENTFLTDRVELSLREQKINNINTQEEVLD 286
Query: 250 HIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSV 309
+IG F+ S S + I ++FVHL + NDK+NLLI M+QKL+++V
Sbjct: 287 YIGSRFRARTQFPPSFSNIKIGRWFINQFVFVHLPNYNDKYNLLILMIQKLYAMVGGKCG 346
Query: 310 SDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV 369
+DN DS QE+LL GH+ + LKEKL ++L K + E+ K D A +KKV
Sbjct: 347 TDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDA-LKKV 405
Query: 370 MEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS 429
++KN +I L TG L + +G+DLQQ +G+ V A++LNFLRFIS FR++HRGA
Sbjct: 406 LDKN--FKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAF 463
Query: 430 FAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMR 489
FA ++TT++RKL+PESWGF CPVHTPDG PCGLLNH++S C V D+ + K +
Sbjct: 464 FATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVT--VDAAQD-PTVQKAQ 520
Query: 490 TSILRVLIGVGMIP-SLPKLVKSGPPAV-LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
T + L GM+P + + + + L + G++ E+ K++ +LR +
Sbjct: 521 TLLPSFLAAHGMLPIDMVSVYQHQYLTITLDGRVLGKIEPKA-GEEMVKMLRYLRSMGNE 579
Query: 548 AASVIPDDLEVGYVPLSL-GGAYPGLYLFTSPPKFVRPVRNISLPSEE 594
+ ++ P ++ G Y G+ LFT+ +F+RPV N++ E
Sbjct: 580 PSIPKTMEISYA-PPTNVENGQYSGISLFTTGARFMRPVVNLTSGQNE 626
Score = 415 (151.1 bits), Expect = 7.2e-135, Sum P(3) = 7.2e-135
Identities = 89/190 (46%), Positives = 115/190 (60%)
Query: 936 DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
DE+ + +D GE L GFN G E +YSG G E CEIF G YYQRLRHMV DK+QV
Sbjct: 953 DENNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHMVKDKYQV 1012
Query: 996 RSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
R+ G ++ +TRQP FGEMERDSLLAHGA++ L+DRL SD+ VC L
Sbjct: 1013 RALGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMKSSDFAKIKVCKL 1072
Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
CGS LT I+ +K + C +C++S + T+++PYVF YL AELA
Sbjct: 1073 CGSTLT---IYSKKDYSNQTVS----------ECKSCKSSDSIATISIPYVFTYLVAELA 1119
Query: 1116 AMNIKITLQL 1125
A+NI + LQ+
Sbjct: 1120 AVNITMKLQV 1129
Score = 64 (27.6 bits), Expect = 9.3e-189, Sum P(2) = 9.3e-189
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 10 EPLRELVRHHIESFDYMLDEGL------SE--MFDH-CRQAKISYT 46
E L+ L++ HI+SFD+ D G+ SE F+H Q KI +T
Sbjct: 3 EELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQYKIRFT 48
Score = 42 (19.8 bits), Expect = 2.2e-35, Sum P(3) = 2.2e-35
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 744 IYQTETIDLSDDGNKVD 760
+Y+ +D DDG +VD
Sbjct: 88 LYEVNEMDEMDDGTEVD 104
>MGI|MGI:108014 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IMP]
[GO:0009303 "rRNA transcription" evidence=ISO;IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0017126 "nucleologenesis" evidence=IMP]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Reactome:REACT_78136
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 MGI:MGI:108014 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
EMBL:CH466519 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
GO:GO:0005736 GO:GO:0003899 CleanEx:MM_RPA2 Reactome:REACT_86751
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 EMBL:U58280 EMBL:AK143501 EMBL:AK144616
EMBL:AL833780 EMBL:BX000699 IPI:IPI00112769 PIR:T42723
RefSeq:NP_033112.2 UniGene:Mm.259078 ProteinModelPortal:P70700
STRING:P70700 PhosphoSite:P70700 PaxDb:P70700 PRIDE:P70700
Ensembl:ENSMUST00000103205 GeneID:20017 KEGG:mmu:20017
HOGENOM:HOG000222963 InParanoid:Q3UMX7 NextBio:297521 Bgee:P70700
Genevestigator:P70700 GermOnline:ENSMUSG00000027395 Uniprot:P70700
Length = 1135
Score = 1274 (453.5 bits), Expect = 9.7e-189, Sum P(3) = 9.7e-189
Identities = 281/586 (47%), Positives = 362/586 (61%)
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
SI +L G+G+ P V + P S VLLDG +VG + +V LRR KV
Sbjct: 529 SIPALLCGLGVTP-----VDTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKV 583
Query: 547 SAASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
IP +EV +P++ YPGL+LFT+P + VRPV+N+ L EE LIG E
Sbjct: 584 LREKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTME 638
Query: 606 QVFMEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
Q+FM + D GG +TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM K
Sbjct: 639 QLFMNVAIFEDEVFGGI-----STHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGK 693
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
QTMGF + + R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDM
Sbjct: 694 QTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDM 753
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGL 784
EDAMI+NK+S +RG HG +Y++E IDLS+ + + + D + + +D DGL
Sbjct: 754 EDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQK-LDDDGL 812
Query: 785 PYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIR 841
P++G + G+PY S + T K E+ VD + V DM + K + I
Sbjct: 813 PFIGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKF--KCICIT 870
Query: 842 FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
R RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML
Sbjct: 871 VRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGML 929
Query: 902 LESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEV 961
+ES+A K +LHG DATPF S E S ++ GEML+ G+N++G E
Sbjct: 930 IESMAGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTER 978
Query: 962 LYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFG 1021
LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR+TG D++T QP FG
Sbjct: 979 LYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFG 1038
Query: 1022 EMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
EMERD+LLAHG ++LLHDRL CSD VA +C CGS+L+ P
Sbjct: 1039 EMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLEKP 1084
Score = 961 (343.3 bits), Expect = 4.3e-149, Sum P(3) = 4.3e-149
Identities = 226/565 (40%), Positives = 328/565 (58%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L + L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MV
Sbjct: 135 GYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMV 194
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V +RCVR++ S+V + L+Y+ NG+V L F + + + LP+G LK
Sbjct: 195 RPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALK 254
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L K K+E + VS+ ++I++ E ++ Q L ++
Sbjct: 255 ALVSFSDYQIFQELI-----KGKEEDSFFRNS-VSQMLRIVIEE----GCHSQKQVLNYL 304
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ + AE ++ I +HL N DKF LL M +KLF+L + D
Sbjct: 305 GECFRVKLSLPDWYPNVEAAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDD 364
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVM 370
NPDSL NQE+L PG L ++LKEK+E+WL K++ D+ +K + N N+ K+
Sbjct: 365 NPDSLVNQEVLSPGQLFLMFLKEKMENWL-VSIKIVLDK---RAQKANVSINNENLMKIF 420
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
++ E +L TG L ++TGL Q +G V A++LNFLR++S FR VHRGA+F
Sbjct: 421 SMGT--ELTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAF 478
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
A +RTT+VR+LLPESWGFLCPVHTPDG PCGLLNH+T+ C V + +
Sbjct: 479 AKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKF----------VYTA 528
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
SI +L G+G+ P V + P S VLLDG +VG + +V LRR KV
Sbjct: 529 SIPALLCGLGVTP-----VDTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKV 583
Query: 547 SAASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
IP +EV +P++ YPGL+LFT+P + VRPV+N+ L EE LIG E
Sbjct: 584 LREKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTME 638
Query: 606 QVFMEIRCPD----GGDGGRRNAFP 626
Q+FM + + GG + FP
Sbjct: 639 QLFMNVAIFEDEVFGGISTHQELFP 663
Score = 536 (193.7 bits), Expect = 9.7e-189, Sum P(3) = 9.7e-189
Identities = 120/329 (36%), Positives = 189/329 (57%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR K +Y G+L AD+ + ++++ F G P+M+K++ C+L + L+
Sbjct: 103 CRGRKSTYRGRLTADISWAVNGVPKGIIKQ-F-LGYVPIMVKSKLCNLYNLPPRVLIEHH 160
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V +RCVR++ S
Sbjct: 161 EEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSMRCVREEHS 220
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+Y+ NG+V L F + + + LP+G LKALV +D +IF L K K+E
Sbjct: 221 AVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI-----KGKEED 275
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ VS+ ++I++ E ++ Q L ++GE F+ + AE ++
Sbjct: 276 SFFRNS-VSQMLRIVIEE----GCHSQKQVLNYLGECFRVKLSLPDWYPNVEAAEFLLNQ 330
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL N DKF LL M +KLF+L + DNPDSL NQE+L PG L ++LKEK+E
Sbjct: 331 CICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKME 390
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANI 366
+WL K ++ + + NL I
Sbjct: 391 NWLVSIKIVLDKRAQKANVSINNENLMKI 419
Score = 473 (171.6 bits), Expect = 4.3e-149, Sum P(3) = 4.3e-149
Identities = 98/192 (51%), Positives = 122/192 (63%)
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S ++ GEML+ G+N++G E LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 954 EENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVR 1013
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA +C C
Sbjct: 1014 TTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVEC 1073
Query: 1057 GSVLTATFIHPQKRAIREIGGLPP---ARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
GS+L+ P PP A +K C C S ++TV++PYVFRY AE
Sbjct: 1074 GSLLSPLLEKP-----------PPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAE 1122
Query: 1114 LAAMNIKITLQL 1125
LAAMNIK+ L +
Sbjct: 1123 LAAMNIKVKLDV 1134
Score = 58 (25.5 bits), Expect = 9.7e-189, Sum P(3) = 9.7e-189
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 12 LRELVRHHIESFDYMLDEGLS 32
L++L R H++SF+Y EGLS
Sbjct: 35 LQDLTRAHVDSFNYAALEGLS 55
Score = 37 (18.1 bits), Expect = 3.9e-136, Sum P(3) = 3.9e-136
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIR-DFSKMRTSILRVLIG--VGMIPS 504
+ P P G C LN + CR S Y RG + D S + + +I +G +P
Sbjct: 82 ISPPSVPKGTICKDLNVYPAECRGRKSTY--RGRLTADISWAVNGVPKGIIKQFLGYVPI 139
Query: 505 LPK 507
+ K
Sbjct: 140 MVK 142
>UNIPROTKB|F8W898 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AC012442 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00916790 ProteinModelPortal:F8W898 SMR:F8W898
Ensembl:ENST00000409894 UCSC:uc010fko.2 ArrayExpress:F8W898
Bgee:F8W898 Uniprot:F8W898
Length = 952
Score = 1236 (440.2 bits), Expect = 6.1e-183, Sum P(3) = 6.1e-183
Identities = 258/518 (49%), Positives = 332/518 (64%)
Query: 552 IPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
IP +EV +P++ YPGL+LFT+P + VRPV+N++L EE LIG EQ+FM
Sbjct: 406 IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMN 460
Query: 611 IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
+ + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF
Sbjct: 461 VAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 516
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+ + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 517 LLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 576
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP++G
Sbjct: 577 NKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAK 635
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN-IRFRHTRNPI 849
+ G+PY S + T K E+ VD + V ++ + K I R RNP
Sbjct: 636 LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPT 695
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 696 IGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKS 754
Query: 910 GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
+LHG DATPF S E S ++ GEML+ G+N++G E LYSG+ G
Sbjct: 755 AALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGL 803
Query: 970 ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLL 1029
EL +IFIG VYYQRLRHMVSDKFQVR+TG D++T QP FGEMERD+LL
Sbjct: 804 ELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALL 863
Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
AHG ++LLHDRL CSD VA VC CGS+L+ P
Sbjct: 864 AHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP 901
Score = 512 (185.3 bits), Expect = 6.1e-183, Sum P(3) = 6.1e-183
Identities = 110/299 (36%), Positives = 177/299 (59%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y GKL AD+ + ++++ F G P+M+K++ C+L+ Q L+
Sbjct: 103 CRGRRSTYRGKLTADINWAVNGISKGIIKQ-F-LGYVPIMVKSKLCNLRNLPPQALIEHH 160
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V + CVR++ S
Sbjct: 161 EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHS 220
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L K K++
Sbjct: 221 AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI-----KGKEDD 275
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ + VS+ ++I++ E +T+ Q L ++GE F+ ++ AE +
Sbjct: 276 SFLRNS-VSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQ 330
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L ++LK L
Sbjct: 331 CICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKGSL 389
Score = 478 (173.3 bits), Expect = 1.3e-92, Sum P(3) = 1.3e-92
Identities = 99/192 (51%), Positives = 122/192 (63%)
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S ++ GEML+ G+N++G E LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 771 EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVR 830
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA VC C
Sbjct: 831 TTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 890
Query: 1057 GSVLTATFIHPQKRAIREIGGLPP---ARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
GS+L+ P PP A +K C C S ++TV++PYVFRY AE
Sbjct: 891 GSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAE 939
Query: 1114 LAAMNIKITLQL 1125
LAAMNIK+ L +
Sbjct: 940 LAAMNIKVKLDV 951
Score = 65 (27.9 bits), Expect = 6.1e-183, Sum P(3) = 6.1e-183
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 12 LRELVRHHIESFDYMLDEGL 31
L+EL R H+ESF+Y + EGL
Sbjct: 35 LQELTRAHVESFNYAVHEGL 54
>FB|FBgn0003278 [details] [associations]
symbol:RpI135 "RNA polymerase I 135kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005730 EMBL:AE014134 GO:GO:0022008
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 EMBL:X17298 EMBL:AY075569 PIR:JQ0354
RefSeq:NP_476708.1 UniGene:Dm.30753 ProteinModelPortal:P20028
STRING:P20028 PaxDb:P20028 EnsemblMetazoa:FBtr0078054 GeneID:33210
KEGG:dme:Dmel_CG4033 CTD:33210 FlyBase:FBgn0003278
GeneTree:ENSGT00550000074993 InParanoid:P20028 OrthoDB:EOG4ZKH24
PhylomeDB:P20028 GenomeRNAi:33210 NextBio:782449 Bgee:P20028
GermOnline:CG4033 Uniprot:P20028
Length = 1129
Score = 884 (316.2 bits), Expect = 2.6e-161, Sum P(3) = 2.6e-161
Identities = 194/553 (35%), Positives = 323/553 (58%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ +SY+G M V + G + G+ P+ML+++ C+L A +++V E
Sbjct: 103 RQLHVSYSG--MCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGE 160
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D ++++ VR+D+SS
Sbjct: 161 HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS 220
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
++ ++YL NG+ + F + +PV ++LK L+D D EI+N L + Y+ ++
Sbjct: 221 LSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYESDQY 276
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
V V+ +L EVQ+ ++ T QC IG F+ P + Q + V + ++
Sbjct: 277 YVSC------VQAMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDD--DVTDFIL 328
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
R+ + +HL+ DKF L++FM+QKLF +N DS QE+LLPGHL YL E+
Sbjct: 329 RERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSER 388
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
+E W+ + ++ +Q ++ + A + + M + + +G +IE+ L TG +A++T
Sbjct: 389 VESWVSQVRRCLQKKLTSPDA---LVTSAVMTQCMRQ--AGGVGRAIESFLATGNIASRT 443
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GL L Q +G + AE +N +R++S FRA+HRG+ F +RTT R+LLP++WGF+CPVHTP
Sbjct: 444 GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCGLLNH+T TC ++ +R K+ +I + LI +GM+P L G
Sbjct: 504 DGTPCGLLNHLTLTCEIS--------MRPDPKLVKAIPKHLIDMGMMP-LSNRRYLGEKL 554
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
+ V LDG+ +G I SE EK+V LR K+ +P +E+G++P G +PGLY+
Sbjct: 555 YV-VFLDGKHLGHIHQSEAEKIVDELRYGKIFGT--LPQMMEIGFIPFKKNGQFPGLYIA 611
Query: 576 TSPPKFVRPVRNI 588
T P + +RPV N+
Sbjct: 612 TGPARMMRPVWNL 624
Score = 803 (287.7 bits), Expect = 8.7e-80, Sum P(2) = 8.7e-80
Identities = 187/454 (41%), Positives = 265/454 (58%)
Query: 481 NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAH 540
++R K+ +I + LI +GM+P L G + V LDG+ +G I SE EK+V
Sbjct: 521 SMRPDPKLVKAIPKHLIDMGMMP-LSNRRYLGEKLYV-VFLDGKHLGHIHQSEAEKIVDE 578
Query: 541 LRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIEL 600
LR K+ +P +E+G++P G +PGLY+ T P + +RPV N+ + +E
Sbjct: 579 LRYGKIFGT--LPQMMEIGFIPFKKNGQFPGLYIATGPARMMRPVWNLKW-----KRVEY 631
Query: 601 IGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
IG EQ++MEI D + +P TH E+ T +S +ANL P D+NQSPRNMY
Sbjct: 632 IGTLEQLYMEIAI----DA--KEMYPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMY 685
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
QCQM KQTMG +A KLY LQTP TP+ R Y +D++ GTNAIVAV++
Sbjct: 686 QCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVIS 745
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV 778
YTGYDMEDAMI+NK++ +RG +G IY+T+ + L D+ F R+ L
Sbjct: 746 YTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL-------DKKSSYFARHPHMPELIKH 798
Query: 779 IDSDGLPYVGQMIHPGEP-YCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNL-PQ 836
+D+DGLP+ G + G P YC +D +++ E V+ ++ S +L P+
Sbjct: 799 LDTDGLPHPGSKLSYGSPLYC-YFDGEVATYKVVKMDEKEDCIVE--SIRQLGSFDLSPK 855
Query: 837 K-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
K I R R IGDKF+SR GQKG+CSQ +P D+PF+ +G+ PD++ NPH FPSR
Sbjct: 856 KMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTE-SGLIPDIVFNPHGFPSR 914
Query: 896 MTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
MTIAM++E++A KG ++HG DATPF S + T
Sbjct: 915 MTIAMMIETMAGKGAAIHGNVYDATPFRFSEENT 948
Score = 677 (243.4 bits), Expect = 2.6e-161, Sum P(3) = 2.6e-161
Identities = 154/374 (41%), Positives = 216/374 (57%)
Query: 759 VDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP-YCSIYDKTTNSWRTNSRKGSE 817
+D+ F R+ L +D+DGLP+ G + G P YC +D +++ E
Sbjct: 779 LDKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYC-YFDGEVATYKVVKMDEKE 837
Query: 818 SVFVDYVAVDMKNSKNL-PQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
V+ ++ S +L P+K I R R IGDKF+SR GQKG+CSQ +P D+PF
Sbjct: 838 DCIVE--SIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPF 895
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
+ +G+ PD++ NPH FPSRMTIAM++E++A KG ++HG DATPF S
Sbjct: 896 TE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFS---------- 944
Query: 936 DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
E + +D G+ML G+NY+G E LYSGV G E+T +IF G V+YQRLRHMV DK+QV
Sbjct: 945 -EENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQV 1003
Query: 996 RSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
RSTG ++ T QP FGEMERD+L++HGAA+LL DRL SD VC
Sbjct: 1004 RSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHK 1063
Query: 1056 CGSVLTATFIHPQKRAIR--EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
CGS+L P +R ++ E GGL + P TC C + + + +P+ F+YL E
Sbjct: 1064 CGSILA-----PLQRIVKRNETGGL--SSQPD--TCRLCGDNSSVSMIEIPFSFKYLVTE 1114
Query: 1114 LAAMNIKITLQLGD 1127
L+++NI +L +
Sbjct: 1115 LSSVNINARFKLNE 1128
Score = 47 (21.6 bits), Expect = 2.6e-161, Sum P(3) = 2.6e-161
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 19 HIESFDYMLDEGLSEMFDH 37
H++SFD ML GL H
Sbjct: 39 HVDSFDEMLTVGLDNSAKH 57
Score = 47 (21.6 bits), Expect = 5.5e-95, Sum P(3) = 5.5e-95
Identities = 12/65 (18%), Positives = 27/65 (41%)
Query: 700 KYGIDEYPTGTNAIVAVLAYT--GYD--MEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
KY ++ P + ++ + + G+ M AM++ + HG +Y S++
Sbjct: 887 KYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEE 946
Query: 756 GNKVD 760
+D
Sbjct: 947 NTAID 951
>UNIPROTKB|F1SUA2 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677 GO:GO:0009790
GO:GO:0009303 GO:GO:0007566 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:CU856034 Ensembl:ENSSSCT00000008871
Uniprot:F1SUA2
Length = 1172
Score = 1276 (454.2 bits), Expect = 1.3e-137, Sum P(3) = 1.3e-137
Identities = 283/583 (48%), Positives = 354/583 (60%)
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
SI +L +G+ P V S P S VLLDG +VG + LR KV
Sbjct: 566 SIPALLCSLGVTP-----VDSAPHRRYSECYPVLLDGVMVGWADKELAPSIADSLRHFKV 620
Query: 547 SAASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
IP +EV +P++ YPGLYLFT+P + VRPV+N+ L EE LIG E
Sbjct: 621 LREKRIPPWMEVVLIPMTGKPSLYPGLYLFTTPCRLVRPVQNLGLGREE-----LIGTME 675
Query: 606 QVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
Q+FM + + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQ
Sbjct: 676 QIFMNVAIFED----EVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQ 731
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
TMGF + K R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDME
Sbjct: 732 TMGFPLLTFKDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDME 791
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP 785
DAMILNK+S +RG HG +Y++E IDLS+ + D R D + +D DGLP
Sbjct: 792 DAMILNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVRPGDPRVAQK-LDDDGLP 850
Query: 786 YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN-IRFRH 844
+VG + G+PY S + T K E+ VD + V ++ + K I R
Sbjct: 851 FVGAQLQYGDPYYSYLNLNTGESFVVYYKSKENCIVDNIKVCGNDTGSGRFKCVCITMRV 910
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES
Sbjct: 911 PRNPTIGDKFASRHGQKGILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIES 969
Query: 905 VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
+A K +LHG DATPF S E S ++ GEML+ G+NY+G E LYS
Sbjct: 970 MAGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNYYGTERLYS 1018
Query: 965 GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEME 1024
G+ G EL +IFIG VYYQRLRHMVSDKFQVR+TG D++T QP FGEME
Sbjct: 1019 GISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEME 1078
Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
RD+LLAHG ++LLHDRL CSD VA VC CGS+L+ P
Sbjct: 1079 RDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP 1121
Score = 992 (354.3 bits), Expect = 1.1e-154, Sum P(3) = 1.1e-154
Identities = 226/576 (39%), Positives = 331/576 (57%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y G+L AD+ + V+++ F G P+M+K++ C+L + L+
Sbjct: 139 CRGRRSTYRGRLTADISWAVNGISKGVIKQ-F-LGYVPIMVKSKLCNLYSLSPRALIEHH 196
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA-VVIRCVRKDQ 156
EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V + CVR++
Sbjct: 197 EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGPGYTQYVGVSMHCVREEH 256
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L K K++
Sbjct: 257 SAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI-----KGKED 311
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+ + VS+ ++I++ E T+ Q L ++GE F+ ++ AE +
Sbjct: 312 DSFLRNS-VSQMLRIVMEE----GCATQKQVLNYLGERFRVKVNLPDWYPNEQAAEFLFN 366
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ I +HL N +KF +L M +KLF+L + +NPDSL NQE+L PG L ++LKEKL
Sbjct: 367 ECICIHLKSNTEKFYMLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFLMFLKEKL 426
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
E WL K I + + N N+ K++ N + E +L TG L ++TG
Sbjct: 427 EAWLVSIKIAIDKKAQKTSVSL---NTENLMKIL--NLGIDLTKPFEYLLATGNLRSKTG 481
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFLCPVHTPD
Sbjct: 482 LGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPD 541
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
GEPCGL+NH+T+TC V + + +I L +GV + S P S
Sbjct: 542 GEPCGLMNHLTATCEVVTQFVYTASI--------PALLCSLGVTPVDSAPHRRYS---EC 590
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPGLYLF 575
VLLDG +VG + LR KV IP +EV +P++ YPGLYLF
Sbjct: 591 YPVLLDGVMVGWADKELAPSIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLYLF 650
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
T+P + VRPV+N+ L EE LIG EQ+FM +
Sbjct: 651 TTPCRLVRPVQNLGLGREE-----LIGTMEQIFMNV 681
Score = 485 (175.8 bits), Expect = 1.1e-154, Sum P(3) = 1.1e-154
Identities = 100/192 (52%), Positives = 123/192 (64%)
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S ++ GEML+ G+NY+G E LYSG+ G EL +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 991 EENSALEYFGEMLKAAGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVR 1050
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D++T QP FGEMERD+LLAHG ++LLHDRL CSD VA VC C
Sbjct: 1051 TTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 1110
Query: 1057 GSVLTATFIHPQKRAIREIGGLPP---ARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
GS+L+ P PP A +K +C C S ++TV++PYVFRY AE
Sbjct: 1111 GSLLSPLLEKP-----------PPSWSAMRNRKYSCSLCNRSDTIDTVSVPYVFRYFVAE 1159
Query: 1114 LAAMNIKITLQL 1125
LAAMNIK+ L +
Sbjct: 1160 LAAMNIKVKLDI 1171
Score = 68 (29.0 bits), Expect = 1.1e-154, Sum P(3) = 1.1e-154
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 12 LRELVRHHIESFDYMLDEGLS 32
L+EL R H+ESF+Y + EGLS
Sbjct: 71 LQELTRAHVESFNYAVREGLS 91
Score = 39 (18.8 bits), Expect = 1.3e-137, Sum P(3) = 1.3e-137
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIR-DFSKMRTSILRVLIG--VGMIPS 504
+ P P G C LN + CR S Y RG + D S I + +I +G +P
Sbjct: 118 ISPPTVPKGSICKELNIYPAECRGRRSTY--RGRLTADISWAVNGISKGVIKQFLGYVPI 175
Query: 505 LPK 507
+ K
Sbjct: 176 MVK 178
>WB|WBGene00008781 [details] [associations]
symbol:rpoa-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0043652 "engulfment of apoptotic cell" evidence=IMP]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0003677 GO:GO:0006351 GO:GO:0040035 GO:GO:0043652
GO:GO:0003899 HSSP:P08518 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
HOGENOM:HOG000222963 EMBL:Z75535 PIR:T20870 RefSeq:NP_492476.1
ProteinModelPortal:Q27493 SMR:Q27493 STRING:Q27493 PaxDb:Q27493
EnsemblMetazoa:F14B4.3 GeneID:172752 KEGG:cel:CELE_F14B4.3
UCSC:F14B4.3 CTD:172752 WormBase:F14B4.3 InParanoid:Q27493
NextBio:876871 Uniprot:Q27493
Length = 1127
Score = 1147 (408.8 bits), Expect = 3.2e-119, Sum P(2) = 3.2e-119
Identities = 249/587 (42%), Positives = 351/587 (59%)
Query: 346 LIQDEIENNGKKFDFF-NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAG 404
+++ ++E + DF A I K + + +I + L TG L T+ GL LQQ +G
Sbjct: 367 MVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESG 426
Query: 405 YTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLN 464
++V AER+N LRF+S FRA+HRGA F +RTT VRKL PE+WGF+CPVHTPDG PCGLLN
Sbjct: 427 FSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLN 486
Query: 465 HMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA--VLSVLLD 522
H+T++CR+ + N+ S+L L GM K V PP + VL++
Sbjct: 487 HVTASCRIVTDLSDNSNV-------PSLLAEL---GMYTH--KTVALAPPGEELYPVLMN 534
Query: 523 GRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-----LGGAYPGLYLFTS 577
GR +G +P ++ + +LR KV+ + IP E+ V S + YPG+Y+ +
Sbjct: 535 GRFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSD 594
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTG 636
+ +RPVRN+++ + +E IG FEQV++ + P+ + G H+E+HP+
Sbjct: 595 AGRLIRPVRNLAMDA-----VEHIGTFEQVYLSVVLDPEEAEPG-----VTMHQELHPSC 644
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
+ S NL P+ DHNQSPRN+YQCQM KQTMG +V A RAD K+Y LQ PQ P+++
Sbjct: 645 LFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLE 704
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
Y KY +DEYP GTNA VAV++YTGYDMEDAM +NK+S RG HG + + E I+L +
Sbjct: 705 AYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTER 764
Query: 757 NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGS 816
+ + +F RN + + DGLP G+ E Y ++ T +RT+ +
Sbjct: 765 ER----KTIFYRNPREEI--KTVGPDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYA 818
Query: 817 ESVFVDYVA-VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
E + V V+ + + A I++R RNPIIGDKF+SRHGQKG+ S LWP +PF
Sbjct: 819 EPAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPF 878
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
S TGM PD+I NPH FPSRMTI M++ES+A K + HG+ DA+PF
Sbjct: 879 SE-TGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPF 924
Score = 748 (268.4 bits), Expect = 2.6e-140, Sum P(3) = 2.6e-140
Identities = 172/563 (30%), Positives = 304/563 (53%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ ++Y G L ++ + ++ G+ P+ML++ CHL+G ++LV
Sbjct: 73 CRQRGLTYAGNLKVGIDVHVNGSRLDIIE--IILGKVPIMLRSEGCHLRGMSRKELVVAG 130
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYFI+NG E+V R +I ++N+P++++R +F+++ + +++ V++R V+++ +
Sbjct: 131 EEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHT 190
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL G+++L + + + +P+ ++KAL D ND I +K+
Sbjct: 191 AVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVI--------SAGFKR-- 240
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--ESYYAVAETVI 275
G S + +LA+ Q+ + + ++ IG F+ + + E +I
Sbjct: 241 GRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFII 300
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
R+ + +HL+ + +KF+ L +M QKL +LV + PD+ Q QE + GH++ + L+E+
Sbjct: 301 RECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRER 360
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFF-NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
+E+ + G +++ ++E + DF A I K + + +I + L TG L T+
Sbjct: 361 MENII--G--MVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTR 416
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
GL LQQ +G++V AER+N LRF+S FRA+HRGA F +RTT VRKL PE+WGF+CPVHT
Sbjct: 417 VGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHT 476
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK---MRTSILRVLIGVGMIPSLPKLVKS 511
PDG PCGLLNH+T++CR+ + N+ M T L G L ++ +
Sbjct: 477 PDGAPCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPG--EELYPVLMN 534
Query: 512 GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPG 571
G L + + + KV R S +++ ++ + YPG
Sbjct: 535 G--RFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQ----YPG 588
Query: 572 LYLFTSPPKFVRPVRNISLPSEE 594
+Y+ + + +RPVRN+++ + E
Sbjct: 589 IYILSDAGRLIRPVRNLAMDAVE 611
Score = 686 (246.5 bits), Expect = 2.6e-140, Sum P(3) = 2.6e-140
Identities = 155/371 (41%), Positives = 212/371 (57%)
Query: 760 DRGQK-LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSES 818
+R +K +F RN + + DGLP G+ E Y ++ T +RT+ +E
Sbjct: 763 ERERKTIFYRNPREEI--KTVGPDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEP 820
Query: 819 VFVDYVA-VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ V V+ + + A I++R RNPIIGDKF+SRHGQKG+ S LWP +PFS
Sbjct: 821 AYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSE 880
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
TGM PD+I NPH FPSRMTI M++ES+A K + HG+ DA+PF +E
Sbjct: 881 -TGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFV-----------FNE 928
Query: 938 SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
+ ++ GE+L G+NY+G E YSGV G ++ +IF G VYYQRLRHM++DKFQVR+
Sbjct: 929 DNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRA 988
Query: 998 TGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
TG +D IT QP FGEMERD+++AHG +++L DRL CSD VA C CG
Sbjct: 989 TGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCG 1048
Query: 1058 SVLTATFI-----HPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAA 1112
S+L+ H K+ ++ L + C C + + +P VFRYL A
Sbjct: 1049 SLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQR---CRTCDKDDQVFLLQVPRVFRYLTA 1105
Query: 1113 ELAAMNIKITL 1123
ELAAMN+KI L
Sbjct: 1106 ELAAMNVKIKL 1116
Score = 47 (21.6 bits), Expect = 2.6e-140, Sum P(3) = 2.6e-140
Identities = 5/17 (29%), Positives = 14/17 (82%)
Query: 14 ELVRHHIESFDYMLDEG 30
++ +H++SFD+++ +G
Sbjct: 4 DIASYHVDSFDFLVSKG 20
>CGD|CAL0002109 [details] [associations]
symbol:RPA135 species:5476 "Candida albicans" [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 CGD:CAL0002109 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000024 GO:GO:0003899
eggNOG:COG0085 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:XP_720354.1 RefSeq:XP_888689.1
STRING:Q5AFK6 GeneID:3637996 GeneID:3704205 KEGG:cal:CaO19.7062
KEGG:cal:CaO19_7062 Uniprot:Q5AFK6
Length = 1166
Score = 1329 (472.9 bits), Expect = 1.1e-137, Sum P(2) = 1.1e-137
Identities = 296/672 (44%), Positives = 405/672 (60%)
Query: 468 STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVG 527
S C + ++ + I + + + + L +G++P+ +GP + V LDG++VG
Sbjct: 514 SPCGLLNHLSHKCKIATEASDVSQVPKALTQLGVLPA--DSFAAGPN-LCCVQLDGKIVG 570
Query: 528 VIPSSEIEKVVAH-LRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVR 586
+ E ++VA LR KV+ +P DLE+GYVP S G YPGLY+F + +RPV+
Sbjct: 571 WT-THEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQYPGLYIFGGHSRMMRPVK 629
Query: 587 NISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTP 646
+ L E+ ++GPFEQV+M + + N +H E PT +LS++ANLTP
Sbjct: 630 YLPLDKED-----IVGPFEQVYMNVAVTP--EEIENNIH--SHVEFTPTNILSILANLTP 680
Query: 647 YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEY 706
+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV+ N Y YG+D +
Sbjct: 681 FSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNF 740
Query: 707 PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLF 766
P G NAIVAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE +DLS + D + F
Sbjct: 741 PNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSRRRGDPITQHF 800
Query: 767 RRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV 824
D ++ +D+DGLP +G + G+P + YD T + + SE +++ V
Sbjct: 801 GFGSDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEV 860
Query: 825 AV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
+ D N + Q+ I++R TR P+IGDKFSSRHGQKGVCS+ WP IDMPF+ +GM+
Sbjct: 861 KLLGDDSNEQE-GQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTE-SGMQ 918
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLV 942
PD+IINPHAFPSRMTI M +ES+A K G+LHG D+TP+ K N E +
Sbjct: 919 PDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPW-----KFN------EQDTPA 967
Query: 943 DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMD 1002
D GE L G+NYHG E +YSG G EL C+I+IG VYYQRLRHMV+DKFQVRSTG ++
Sbjct: 968 DYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVN 1027
Query: 1003 QITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA 1062
+T QP GEMERD+L+ HG ++LL DRL CSDY VC CGS+LT
Sbjct: 1028 SLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSCGSILTT 1087
Query: 1063 TFIHPQKRAIREIGGLPPARAPKKVTCHACQTS-----KGME--------TVAMPYVFRY 1109
P+ ++ I A K +A + G + TVA+P+V +Y
Sbjct: 1088 QTSVPRIGSMASIRCRRCAVGLDKYEGYAADSDIWEDGHGKKFVGGDDTTTVAIPFVLKY 1147
Query: 1110 LAAELAAMNIKI 1121
L +EL+AM IK+
Sbjct: 1148 LDSELSAMGIKM 1159
Score = 1040 (371.2 bits), Expect = 3.5e-107, Sum P(2) = 3.5e-107
Identities = 228/558 (40%), Positives = 349/558 (62%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y +LM +V + D V E GQ P+MLK+ RCHL+ +LV K
Sbjct: 108 CRERMVTYRSRLMLNVTWSVNDEEE--VSEVREAGQIPIMLKSNRCHLEKLSPNQLVEAK 165
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT + IR VR DQ+
Sbjct: 166 EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQT 225
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + E+L+PV ++LKAL++TND EIF+ + E
Sbjct: 226 SQTNVLHYLNDGNVTFRFSWRKNEFLVPVVMILKALIETNDREIFDGIVGNDTE------ 279
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ +++R++++L + +L ++ + L ++G+ F+ V S V + V++
Sbjct: 280 ----NSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVVFGASPDMSDIEVGKEVLKR 335
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ VHL +N DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + +KEK+E
Sbjct: 336 IVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIE 395
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
++L+ K IQ +I N G +F + + +V + ++ IG ++ L TG L +Q+GL
Sbjct: 396 EYLQNIKLQIQSDI-NRGVGINFDDRKYMTRVFSRI-NENIGQKLQYFLSTGNLVSQSGL 453
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG
Sbjct: 454 DLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDG 513
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNH++ C++A+ D S+ + + L +G++P+ +GP +
Sbjct: 514 SPCGLLNHLSHKCKIAT------EASDVSQ----VPKALTQLGVLPA--DSFAAGPN-LC 560
Query: 518 SVLLDGRVVGVIPSSEIEKVVAH-LRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
V LDG++VG + E ++VA LR KV+ +P DLE+GYVP S G YPGLY+F
Sbjct: 561 CVQLDGKIVGWT-THEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQYPGLYIFG 619
Query: 577 SPPKFVRPVRNISLPSEE 594
+ +RPV+ + L E+
Sbjct: 620 GHSRMMRPVKYLPLDKED 637
Score = 40 (19.1 bits), Expect = 1.1e-137, Sum P(2) = 1.1e-137
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 5 KSADFEPL-RELVRHHIESFDYMLD 28
K D PL ++ V H+ SF+ ++D
Sbjct: 20 KDMDSYPLLKDAVAPHVGSFNALMD 44
>SGD|S000006214 [details] [associations]
symbol:RPA135 "RNA polymerase I second largest subunit A135"
species:4932 "Saccharomyces cerevisiae" [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IDA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 SGD:S000006214
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 EMBL:Z71255
EMBL:U31900 EMBL:BK006949 EMBL:Z49919 GO:GO:0005736 GO:GO:0003899
GO:GO:0042790 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
HOGENOM:HOG000222963 OrthoDB:EOG4W11N4 EMBL:M62804 PIR:A39607
RefSeq:NP_015335.1 ProteinModelPortal:P22138 DIP:DIP-135N
IntAct:P22138 MINT:MINT-423299 STRING:P22138 PaxDb:P22138
PeptideAtlas:P22138 EnsemblFungi:YPR010C GeneID:856119
KEGG:sce:YPR010C CYGD:YPR010c OMA:FNLLIFM NextBio:981198
Genevestigator:P22138 GermOnline:YPR010C Uniprot:P22138
Length = 1203
Score = 1312 (466.9 bits), Expect = 2.5e-136, Sum P(2) = 2.5e-136
Identities = 299/684 (43%), Positives = 407/684 (59%)
Query: 468 STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVG 527
S C + +++ + I + I +L +G+ P+ +GP ++ V +DG+++G
Sbjct: 537 SPCGLLNHFAHKCRISTQQSDVSRIPSILYSLGVAPASHTFA-AGP-SLCCVQIDGKIIG 594
Query: 528 VIPSSEIEKVVAH-LRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV 585
+ S E K++A LR KV + +P DLE+GYVP S G YPGLYLF + +RPV
Sbjct: 595 WV-SHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLYLFGGHSRMLRPV 653
Query: 586 RNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLT 645
R + L E+ ++GPFEQV+M I + N TH E PT +LS++ANLT
Sbjct: 654 RYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFTPTNILSILANLT 704
Query: 646 PYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDE 705
P+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV+ N Y YG+D
Sbjct: 705 PFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDN 764
Query: 706 YPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKL 765
+P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE +DL+ + N+ D +
Sbjct: 765 FPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQH 824
Query: 766 FRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDY 823
F D K +D DGLPY+G + G+P C+ +D T N + + SE +++
Sbjct: 825 FGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEE 884
Query: 824 VAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
V + D N Q +I++R R P IGDKFSSRHGQKGVCS+ WP IDMPFS TG+
Sbjct: 885 VNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSE-TGI 943
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
+PD+IINPHAFPSRMTI M +ES+A K G+LHG D+TP+ +E +
Sbjct: 944 QPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWI-----------FNEDDTP 992
Query: 942 VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
D GE L G+NYHG E +YSG G EL +I++G VYYQRLRHMV+DKFQVRSTG +
Sbjct: 993 ADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPV 1052
Query: 1002 DQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
+ +T QP GEMERD+L+ HG ++LL DRL SDY A VC CGS+LT
Sbjct: 1053 NSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQASVCRECGSILT 1112
Query: 1062 ATFIHPQKRAIREIGG-------------LPPARAPKKVTCHACQT------SK---GME 1099
P+ +I + L + +K+ Q +K G E
Sbjct: 1113 TQQSVPRIGSISTVCCRRCSMRFEDAKKLLTKSEDGEKIFIDDSQIWEDGQGNKFVGGNE 1172
Query: 1100 T--VAMPYVFRYLAAELAAMNIKI 1121
T VA+P+V +YL +EL+AM I++
Sbjct: 1173 TTTVAIPFVLKYLDSELSAMGIRL 1196
Score = 1027 (366.6 bits), Expect = 3.1e-106, Sum P(2) = 3.1e-106
Identities = 234/579 (40%), Positives = 356/579 (61%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY GKL+ +++ ++ G + E + G PVML++ RCHL +LV KE
Sbjct: 127 RQRLTSYRGKLLLKLKWS-VNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKE 185
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ + IR VR DQ+S
Sbjct: 186 ESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTS 245
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL +G V F + EYL+PV ++LKAL T+D EIF+ +
Sbjct: 246 QTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGII----------GN 295
Query: 219 AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
V +++R++++L + L R Q LQ++G+ F+ V +S V + V+
Sbjct: 296 DVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLD 355
Query: 277 DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
+ VHL + + DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + LKE
Sbjct: 356 RIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 415
Query: 335 KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
K++++L+ ++ +I N G +F + + +V+ + ++ IG+ ++ L TG L +Q
Sbjct: 416 KIDEYLQNIIAQVRMDI-NRGMAINFKDKRYMSRVLMR-VNENIGSKMQYFLSTGNLVSQ 473
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHT
Sbjct: 474 SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHT 533
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH CR+++ D S++ + +L +G+ P+ +GP
Sbjct: 534 PDGSPCGLLNHFAHKCRISTQQS------DVSRIPS----ILYSLGVAPASHTFA-AGP- 581
Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAH-LRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGL 572
++ V +DG+++G + S E K++A LR KV + +P DLE+GYVP S G YPGL
Sbjct: 582 SLCCVQIDGKIIGWV-SHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGL 640
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
YLF + +RPVR + L E+ ++GPFEQV+M I
Sbjct: 641 YLFGGHSRMLRPVRYLPLDKED-----IVGPFEQVYMNI 674
Score = 44 (20.5 bits), Expect = 2.5e-136, Sum P(2) = 2.5e-136
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 3 RKKSADFEPLRELVRHHIESFDYMLDEG 30
+ KSA F L+E V+ HI SF+ L EG
Sbjct: 30 KDKSA-FPLLQEAVQPHIGSFN-ALTEG 55
>UNIPROTKB|F1NLV9 [details] [associations]
symbol:F1NLV9 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0017126 "nucleologenesis"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0003677 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:AADN02041199 IPI:IPI00576768
Ensembl:ENSGALT00000014017 Uniprot:F1NLV9
Length = 1016
Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
Identities = 273/590 (46%), Positives = 362/590 (61%)
Query: 490 TSILRVLIGVGMIPSLPKLVKSGPPA-VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
T + +L +G++P S P A VLLDG VVG + +V LRR K++
Sbjct: 413 TDLPPLLCALGVVPI--DATPSRPYAECYRVLLDGAVVGWVEWDLAPQVAEALRRFKITQ 470
Query: 549 ASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQV 607
P EV +P++ YPGL++FT+P + VRPV+N+ +E IG EQV
Sbjct: 471 EKRFPSRAEVVLIPMTGKPSLYPGLFIFTTPCRMVRPVKNLLYGRKE-----WIGTLEQV 525
Query: 608 FMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
FM + + + P TH+E+ P +LSVVANL P+SDHNQSPRNMYQCQM KQ
Sbjct: 526 FMNVATMES------DVMPGVTTHQELFPHSILSVVANLIPFSDHNQSPRNMYQCQMGKQ 579
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
TMGF V K R+D KLY L TPQ+P+VR Y YG+D YP GTN++VAV++Y+GYDME
Sbjct: 580 TMGFPVYNYKDRSDNKLYLLHTPQSPLVRPRMYDYYGMDSYPVGTNSVVAVISYSGYDME 639
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKL-FRRNKDAKSLHSVIDSDGL 784
DAMI+NKSS +RG +G + + E+IDLS N+ G L F ++ +D+DGL
Sbjct: 640 DAMIVNKSSWERGFAYGSVIKMESIDLSLKANR--GGDNLVFGIRPGDPNVKEKLDADGL 697
Query: 785 PYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQ--KANIRF 842
P+VG ++ PG+P+ S + T T + E VD + + N + + KA I
Sbjct: 698 PFVGSILQPGDPFYSYMNLNTGETFTVYYQNKEVGIVDNIKL-CSNDRGTGKFKKACITV 756
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R RNP +GDKF+SRHGQKG+ SQLWP DMPF+ GM PD++ NPH FPSRMTI ML+
Sbjct: 757 RVPRNPTVGDKFASRHGQKGILSQLWPVEDMPFTE-NGMVPDILFNPHGFPSRMTIGMLI 815
Query: 903 ESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVL 962
ES+A K +LHG + DATPF T T+++ +L GE L + G+N+ G E +
Sbjct: 816 ESMAGKSAALHGAYYDATPF----------TFTEKNSAL-KYFGETLVSAGYNFFGTEKM 864
Query: 963 YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGE 1022
YSG+ G EL +IF+G VYYQRLRHMVSDKFQVR+TG D +T QP FGE
Sbjct: 865 YSGISGVELEADIFVGVVYYQRLRHMVSDKFQVRTTGPRDSVTNQPIKGRNVEGGIRFGE 924
Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAI 1072
MERD+LLAHG ++LLHDRL +CSD A VC+ CGS+L+ P ++
Sbjct: 925 MERDALLAHGTSFLLHDRLFSCSDGCEAYVCTSCGSMLSPLLQRPPPSSV 974
Score = 918 (328.2 bits), Expect = 1.7e-135, Sum P(2) = 1.7e-135
Identities = 208/543 (38%), Positives = 317/543 (58%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L Q+L+ EE EMGGYFI+NGLE+V R +I+P++N+P++M
Sbjct: 20 GFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGLEKVIRMLIMPRRNFPLAMT 79
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R +++R G+T+ VV+ CV+ + S++ + L+YL NG V + F Q + + LP+G LK
Sbjct: 80 RHKWKNRGPGFTEYGVVMHCVKDEHSAINMNLHYLENGCVMVNFIFQKELFFLPLGFALK 139
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV+ D +IF L K KK + V+E +L V + T+ L+++
Sbjct: 140 ALVNFTDYQIFEELV-----KDKKNDTFYVN-CVTE----MLRAVAEAGCYTQQNVLEYL 189
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
G+ F+ ++ + S A+ + I +HL D +KF LL M +KL + + D
Sbjct: 190 GKSFRVKLNLPEWYSNEQAADFIFNKCICIHLTDRTEKFYLLCMMTRKLCAFAKGECMED 249
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L G L ++LKE+LE+WL+ K +++ E K D N+ N +M+
Sbjct: 250 NPDSLMNQEVLTAGQLFLMFLKERLENWLQSVKFVLEKRTE----KADI-NI-NADSLMK 303
Query: 372 K-NPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
N + + S E +L TG L ++TGL + Q +G V ++LNF+R++S FR +HRG++F
Sbjct: 304 AFNMTTDVTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFVRYLSHFRCIHRGSAF 363
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
A +RTT+VRKLLPESWGFLCPV TPDGEPCGL+NHMT+ C + + + + T
Sbjct: 364 AQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCEI---------VTEMVPV-T 413
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPA-VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAA 549
+ +L +G++P S P A VLLDG VVG + +V LRR K++
Sbjct: 414 DLPPLLCALGVVPI--DATPSRPYAECYRVLLDGAVVGWVEWDLAPQVAEALRRFKITQE 471
Query: 550 SVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVF 608
P EV +P++ YPGL++FT+P + VRPV+N+ +E IG EQVF
Sbjct: 472 KRFPSRAEVVLIPMTGKPSLYPGLFIFTTPCRMVRPVKNLLYGRKE-----WIGTLEQVF 526
Query: 609 MEI 611
M +
Sbjct: 527 MNV 529
Score = 430 (156.4 bits), Expect = 1.7e-135, Sum P(2) = 1.7e-135
Identities = 87/187 (46%), Positives = 116/187 (62%)
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
E S + GE L + G+N+ G E +YSG+ G EL +IF+G VYYQRLRHMVSDKFQVR
Sbjct: 839 EKNSALKYFGETLVSAGYNFFGTEKMYSGISGVELEADIFVGVVYYQRLRHMVSDKFQVR 898
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
+TG D +T QP FGEMERD+LLAHG ++LLHDRL +CSD A VC+ C
Sbjct: 899 TTGPRDSVTNQPIKGRNVEGGIRFGEMERDALLAHGTSFLLHDRLFSCSDGCEAYVCTSC 958
Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
GS+L+ P ++ + ++ +C C ++ + +P+VFRY AELAA
Sbjct: 959 GSMLSPLLQRPPPSSVA---------SSRRYSCMLCGRMDTIQIIPVPHVFRYFLAELAA 1009
Query: 1117 MNIKITL 1123
MNIK+ L
Sbjct: 1010 MNIKLRL 1016
Score = 46 (21.3 bits), Expect = 6.4e-36, Sum P(2) = 6.4e-36
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG--FSVQALK 675
HP G + ++ + +N SP+ + Q ++ MG F + L+
Sbjct: 17 HPVGFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGLE 61
>SGD|S000005733 [details] [associations]
symbol:RET1 "Second-largest subunit of RNA polymerase III"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IGI;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005733 PANTHER:PTHR20856 EMBL:BK006948
GO:GO:0046872 GO:GO:0003677 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 EMBL:M38723 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 Reactome:REACT_87991
GO:GO:0042797 HOGENOM:HOG000222962 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH OrthoDB:EOG4K6KC8
EMBL:Z75115 PIR:S67099 RefSeq:NP_014850.1 ProteinModelPortal:P22276
DIP:DIP-997N IntAct:P22276 MINT:MINT-644049 STRING:P22276
PaxDb:P22276 PeptideAtlas:P22276 EnsemblFungi:YOR207C GeneID:854382
KEGG:sce:YOR207C CYGD:YOR207c NextBio:976523 Genevestigator:P22276
GermOnline:YOR207C Uniprot:P22276
Length = 1149
Score = 853 (305.3 bits), Expect = 6.8e-112, Sum P(4) = 6.8e-112
Identities = 271/861 (31%), Positives = 412/861 (47%)
Query: 233 LAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSESYYAVAETVIRDYIFVHLNDNND 288
L E L + T+ Q L++IG + + + LQ E A+A TVI ++ V D +
Sbjct: 287 LEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-EGIEAIATTVIA-HLTVEALDFRE 344
Query: 289 KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQ 348
K + M +++ + + + D+ D + N+ + L G LI++ ++ + + K I
Sbjct: 345 KALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSID 404
Query: 349 DEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQ 408
++ + ++ L +I V N I + + + TG + + +RAG T
Sbjct: 405 KVLKKPNRAMEYDALLSIN-VHSNN----ITSGLNRAISTGNWSLKRFK--MERAGVTHV 457
Query: 409 AERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
RL+++ + + + F R S R L P +G LC TP+GE CGL+ ++
Sbjct: 458 LSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLA 515
Query: 468 STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV-LSVLLDGRVV 526
+ + D I+ L ++GV I L+ S + V L+G ++
Sbjct: 516 LMTHITTD-DEEEPIKK--------LCYVLGVEDIT----LIDSASLHLNYGVYLNGTLI 562
Query: 527 GVI--PSSEIEKVVAHLRRL-KVSA-ASVIPDDLEVG-YVPLSLGGAYPGLYLFTSPPKF 581
G I P+ + + HLRR KVS S+ + ++ ++ G L + +
Sbjct: 563 GSIRFPTKFVTQF-RHLRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSR 621
Query: 582 VRPV--RNISLPSE-ESQNIELIGPFEQVFMEIRCPDGGDGG--RRNAFPA-THEEIHPT 635
V+ + R + L E + + +G E ++++ + ++ P+ TH EI P
Sbjct: 622 VKDIHLRKL-LDGELDFDDFLKLGLVE--YLDVNEENDSYIALYEKDIVPSMTHLEIEPF 678
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF-RADQKLYHLQTPQTPIVR 694
+L VA L PY HNQSPRN YQC M KQ +G ++ +F R D LY + PQ P+V+
Sbjct: 679 TILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG-AIAYNQFKRIDTLLYLMTYPQQPMVK 737
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
T T D+ P G NA VAV++Y+GYD+EDA++LNKSS+DRG + + T L
Sbjct: 738 TKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKR 797
Query: 755 DGNKVDR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW---- 808
N G N D H + DGL VG + G+ Y + TNS
Sbjct: 798 YANHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYIN-KSVPTNSADAPN 856
Query: 809 ------RTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
+T R +G E +D V + + S N + R R P +GDKFSS
Sbjct: 857 PNNVNVQTQYREAPVIYRGPEPSHIDQVMMSV--SDNDQALIKVLLRQNRRPELGDKFSS 914
Query: 857 RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF 916
RHGQKGVC + DMPF+ G+ PD+I+NPH FPSRMT+ ++E ++ K G L+G
Sbjct: 915 RHGQKGVCGIIVKQEDMPFND-QGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTL 973
Query: 917 MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIF 976
T F S + D SK LVD+ GFNY G ++LYSG+ G L IF
Sbjct: 974 EYGTCFGGSKLE-------DMSKILVDQ--------GFNYSGKDMLYSGITGECLQAYIF 1018
Query: 977 IGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYL 1036
GP+YYQ+L+HMV DK R+ G +TRQP GEMERD ++A+GA+ L
Sbjct: 1019 FGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQL 1078
Query: 1037 LHDRLHTCSDYHVADVCSLCG 1057
L +RL SD DVC CG
Sbjct: 1079 LLERLMISSDAFEVDVCDKCG 1099
Score = 177 (67.4 bits), Expect = 6.8e-112, Sum P(4) = 6.8e-112
Identities = 52/178 (29%), Positives = 88/178 (49%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L AD K+ L
Sbjct: 118 CRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADESKMAKLN 175
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
E + GGYFI+NG E+V +++ +Q ++ + D ++G +V RK +
Sbjct: 176 ECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSSTHERKSK 230
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
+ V K NG + L +E +P+ IVLKA +DLEI L C D Y+
Sbjct: 231 TYVITK-----NGKIYLKHNSIAEE--IPIAIVLKACGILSDLEIMQ-LVCGNDSSYQ 280
Score = 65 (27.9 bits), Expect = 6.8e-112, Sum P(4) = 6.8e-112
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
C C++++ + + +PY + L EL +MNI L+L D
Sbjct: 1107 CTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLED 1145
Score = 54 (24.1 bits), Expect = 6.8e-112, Sum P(4) = 6.8e-112
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEM 34
F ++ LV+ H++SF+Y +D L ++
Sbjct: 51 FLKVKGLVKQHLDSFNYFVDTDLKKI 76
Score = 42 (19.8 bits), Expect = 4.3e-93, Sum P(3) = 4.3e-93
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 178 QGKEYLLPVGIVLKALVDTNDLEIFNH 204
Q K +LLP + +K LV + L+ FN+
Sbjct: 42 QDKWHLLPAFLKVKGLVKQH-LDSFNY 67
>GENEDB_PFALCIPARUM|PF11_0358 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase,
beta subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04563
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:AE014186 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 RefSeq:XP_001348029.1
ProteinModelPortal:Q8II17 EnsemblProtists:PF11_0358:mRNA
GeneID:810905 KEGG:pfa:PF11_0358 EuPathDB:PlasmoDB:PF3D7_1134700
HOGENOM:HOG000282443 OMA:ENINIDM ProtClustDB:CLSZ2433354
Uniprot:Q8II17
Length = 1517
Score = 696 (250.1 bits), Expect = 1.5e-109, Sum P(3) = 1.5e-109
Identities = 150/304 (49%), Positives = 197/304 (64%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK--FRADQKLYHLQTP 688
E+ T LS +A+LTP+SDHNQSPRN+YQCQM KQTMG +Q+L + K+Y + TP
Sbjct: 934 ELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMG--IQSLNNVYTFTNKIYRMITP 991
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q P+V T Y YG+D +P+GTNA+VA+LAYTGYDMEDA+I+NK+S DRG+ IY+TE
Sbjct: 992 QFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKASADRGIFRTHIYKTE 1051
Query: 749 TIDLSDDGNKVDR--GQKL--FRRNKDA-KSLH-----SVIDSDGLPYVGQMIHPGEPYC 798
IDL G + G + NK+ K+L ++ DGLP V Q I G P
Sbjct: 1052 FIDLQKVGESSNFVFGNNIRYLNNNKNNNKNLAYENKGKFLNKDGLPCVQQKITEGSPLY 1111
Query: 799 SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRH 858
S +K S + FVD+V++ KN+ N Q A ++ R TR P +GDKF+SRH
Sbjct: 1112 SYINKGNELTTYESFRNHGEYFVDFVSIG-KNNSN--QVAVVKLRSTRQPQVGDKFASRH 1168
Query: 859 GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMD 918
GQKGV S+L+P DMPF+ +G+ PD+I NPH PSRMTI ML+ES+ K SL+GK +D
Sbjct: 1169 GQKGVVSRLFPQEDMPFAE-SGIVPDIIFNPHGIPSRMTIGMLIESICGKAASLYGKRID 1227
Query: 919 ATPF 922
ATPF
Sbjct: 1228 ATPF 1231
Score = 337 (123.7 bits), Expect = 1.5e-109, Sum P(3) = 1.5e-109
Identities = 72/187 (38%), Positives = 101/187 (54%)
Query: 942 VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
+D ++L G++Y+G E+LYSG+YG L IFIG +YYQRLRHM DK QVR TG +
Sbjct: 1328 IDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRTGPV 1387
Query: 1002 DQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
+T QP GEMERD +++HG ++++++R SD H VC CG +L+
Sbjct: 1388 CNLTHQPLKGKRKHGGIRVGEMERDGIISHGCSFVINERFLMSSDGHECFVCPKCGLILS 1447
Query: 1062 ATFIHPQKRAI---REIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
I R IGG K C +C S + + +PYV RYL EL +N
Sbjct: 1448 PIMQFNTTGKIMKGRSIGG-----KSKMAVCKSCDVS--CKIIFIPYVIRYLLNELICLN 1500
Query: 1119 IKITLQL 1125
+ I L +
Sbjct: 1501 VTIRLNM 1507
Score = 287 (106.1 bits), Expect = 4.2e-64, Sum P(3) = 4.2e-64
Identities = 99/393 (25%), Positives = 187/393 (47%)
Query: 333 KEKLED-WLRKGKKLIQDEIENNGKKF---DFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
K+KL+ ++ + +KL + ++N K+ ++ L N K N S ++I KT
Sbjct: 506 KKKLKSIFINEKEKLFRS-VDNYFKELYNDNYMFLENCKSF--SNTS----SAILFFFKT 558
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G ++++ L QQ++G+ + A+ +N LR I+ FRA+HRG F ++ + RKLL ESWGF
Sbjct: 559 GNISSEN-LHYQQKSGWVIAADEINNLRLITNFRAIHRGTFFQDVKVLTPRKLLGESWGF 617
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM-IPSLPK 507
+CPVHTPDG PCGLLNH+ C + + + + K+ + IG+ + +
Sbjct: 618 ICPVHTPDGTPCGLLNHLAQYCHIHNLSSNEAH-----KLNIKLYLKKIGINVNLDDTSG 672
Query: 508 LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG-YV--PLS 564
+ + +++D + I + + V L+ K + + E+ Y+ PL
Sbjct: 673 IHTIYDDENIPIIVDSIPITYIGEKDFNRTVYKLKYAKNNNLFNLKSYFEINAYLNEPLI 732
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
+ + + T P + +RP+ N+ ++++IE I P Q ++ + + ++N
Sbjct: 733 MNS----IIINTFPGRLIRPLLNL-----KTKDIEFISPSYQPYISVAI--NNEDVKKNN 781
Query: 625 FPATHEEIHPTGMLSVVANLTPYSD-----HNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
+ + S+ + TP S ++Q+ N+ ++ K++ S + K + D
Sbjct: 782 LARKLLKKKEQVVNSMKIDRTPGSIKQKFLYHQNRENLLW-KLKKESKDGSYKYEKHKID 840
Query: 680 QKLYH-LQTPQTPIVRTNTYTKYGIDEYPTGTN 711
+KL L + TNT EY T ++
Sbjct: 841 RKLLKILDQKKNNDSDTNTDNYVSSSEYDTDSD 873
Score = 182 (69.1 bits), Expect = 1.5e-109, Sum P(3) = 1.5e-109
Identities = 75/307 (24%), Positives = 137/307 (44%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
C+ + +Y G+L+ + QY D + G P+M+ + C+L + ++L
Sbjct: 148 CKLSARTYEGELLIKINRQYKDE---IASTTICAGHIPIMIMSNLCNLSNLNKKELAQKG 204
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ + +GG+F+++G +V R VI PK N +++ ++ D + I C+ D +
Sbjct: 205 EDQSLLGGFFVVSGRLKVIRYVIHPKYN---TLLLNA---------DNKIHINCLLNDNT 252
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE-IFNHLTCCYDEK--YK 214
V L N S GF Q LP ++L L IFN + + + K
Sbjct: 253 VVINFLTLTRNNSYVYGFRFQNAVCSLPFHLLLMILSPIKKKSYIFNKIKLGVENENAIK 312
Query: 215 KEKGAVGSPLVSERV-KIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
+ + S + + + L E +LS R+ L+ G I Y A+
Sbjct: 313 YIELFINSIFLKDTFNEKELFEKYNLSYLGRIAYLRR-G------IFKYNLNCYEKKAKD 365
Query: 274 VIRDYIFVHLNDNNDKFNLLIFMLQKL----FSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+++ I H+ +N++KF + FM +KL F L+ T + N DSL+N + +L+
Sbjct: 366 ILKYCILPHIKNNSEKFETMCFMFKKLIYSNFKLI--TPI--NKDSLENHAVTTCSNLLA 421
Query: 330 IYLKEKL 336
LK+++
Sbjct: 422 NLLKDQV 428
Score = 39 (18.8 bits), Expect = 3.3e-38, Sum P(3) = 3.3e-38
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 771 DAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
D +++ ++DS + Y+G+ Y Y K N + S
Sbjct: 678 DDENIPIIVDSIPITYIGEKDFNRTVYKLKYAKNNNLFNLKS 719
Score = 38 (18.4 bits), Expect = 4.2e-38, Sum P(3) = 4.2e-38
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 771 DAKSLHSVIDSDGLPYV 787
D +H++ D + +P +
Sbjct: 669 DTSGIHTIYDDENIPII 685
>UNIPROTKB|Q8II17 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014186 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
RefSeq:XP_001348029.1 ProteinModelPortal:Q8II17
EnsemblProtists:PF11_0358:mRNA GeneID:810905 KEGG:pfa:PF11_0358
EuPathDB:PlasmoDB:PF3D7_1134700 HOGENOM:HOG000282443 OMA:ENINIDM
ProtClustDB:CLSZ2433354 Uniprot:Q8II17
Length = 1517
Score = 696 (250.1 bits), Expect = 1.5e-109, Sum P(3) = 1.5e-109
Identities = 150/304 (49%), Positives = 197/304 (64%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK--FRADQKLYHLQTP 688
E+ T LS +A+LTP+SDHNQSPRN+YQCQM KQTMG +Q+L + K+Y + TP
Sbjct: 934 ELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMG--IQSLNNVYTFTNKIYRMITP 991
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q P+V T Y YG+D +P+GTNA+VA+LAYTGYDMEDA+I+NK+S DRG+ IY+TE
Sbjct: 992 QFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKASADRGIFRTHIYKTE 1051
Query: 749 TIDLSDDGNKVDR--GQKL--FRRNKDA-KSLH-----SVIDSDGLPYVGQMIHPGEPYC 798
IDL G + G + NK+ K+L ++ DGLP V Q I G P
Sbjct: 1052 FIDLQKVGESSNFVFGNNIRYLNNNKNNNKNLAYENKGKFLNKDGLPCVQQKITEGSPLY 1111
Query: 799 SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRH 858
S +K S + FVD+V++ KN+ N Q A ++ R TR P +GDKF+SRH
Sbjct: 1112 SYINKGNELTTYESFRNHGEYFVDFVSIG-KNNSN--QVAVVKLRSTRQPQVGDKFASRH 1168
Query: 859 GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMD 918
GQKGV S+L+P DMPF+ +G+ PD+I NPH PSRMTI ML+ES+ K SL+GK +D
Sbjct: 1169 GQKGVVSRLFPQEDMPFAE-SGIVPDIIFNPHGIPSRMTIGMLIESICGKAASLYGKRID 1227
Query: 919 ATPF 922
ATPF
Sbjct: 1228 ATPF 1231
Score = 337 (123.7 bits), Expect = 1.5e-109, Sum P(3) = 1.5e-109
Identities = 72/187 (38%), Positives = 101/187 (54%)
Query: 942 VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
+D ++L G++Y+G E+LYSG+YG L IFIG +YYQRLRHM DK QVR TG +
Sbjct: 1328 IDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRTGPV 1387
Query: 1002 DQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
+T QP GEMERD +++HG ++++++R SD H VC CG +L+
Sbjct: 1388 CNLTHQPLKGKRKHGGIRVGEMERDGIISHGCSFVINERFLMSSDGHECFVCPKCGLILS 1447
Query: 1062 ATFIHPQKRAI---REIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
I R IGG K C +C S + + +PYV RYL EL +N
Sbjct: 1448 PIMQFNTTGKIMKGRSIGG-----KSKMAVCKSCDVS--CKIIFIPYVIRYLLNELICLN 1500
Query: 1119 IKITLQL 1125
+ I L +
Sbjct: 1501 VTIRLNM 1507
Score = 287 (106.1 bits), Expect = 4.2e-64, Sum P(3) = 4.2e-64
Identities = 99/393 (25%), Positives = 187/393 (47%)
Query: 333 KEKLED-WLRKGKKLIQDEIENNGKKF---DFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
K+KL+ ++ + +KL + ++N K+ ++ L N K N S ++I KT
Sbjct: 506 KKKLKSIFINEKEKLFRS-VDNYFKELYNDNYMFLENCKSF--SNTS----SAILFFFKT 558
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G ++++ L QQ++G+ + A+ +N LR I+ FRA+HRG F ++ + RKLL ESWGF
Sbjct: 559 GNISSEN-LHYQQKSGWVIAADEINNLRLITNFRAIHRGTFFQDVKVLTPRKLLGESWGF 617
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM-IPSLPK 507
+CPVHTPDG PCGLLNH+ C + + + + K+ + IG+ + +
Sbjct: 618 ICPVHTPDGTPCGLLNHLAQYCHIHNLSSNEAH-----KLNIKLYLKKIGINVNLDDTSG 672
Query: 508 LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG-YV--PLS 564
+ + +++D + I + + V L+ K + + E+ Y+ PL
Sbjct: 673 IHTIYDDENIPIIVDSIPITYIGEKDFNRTVYKLKYAKNNNLFNLKSYFEINAYLNEPLI 732
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
+ + + T P + +RP+ N+ ++++IE I P Q ++ + + ++N
Sbjct: 733 MNS----IIINTFPGRLIRPLLNL-----KTKDIEFISPSYQPYISVAI--NNEDVKKNN 781
Query: 625 FPATHEEIHPTGMLSVVANLTPYSD-----HNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
+ + S+ + TP S ++Q+ N+ ++ K++ S + K + D
Sbjct: 782 LARKLLKKKEQVVNSMKIDRTPGSIKQKFLYHQNRENLLW-KLKKESKDGSYKYEKHKID 840
Query: 680 QKLYH-LQTPQTPIVRTNTYTKYGIDEYPTGTN 711
+KL L + TNT EY T ++
Sbjct: 841 RKLLKILDQKKNNDSDTNTDNYVSSSEYDTDSD 873
Score = 182 (69.1 bits), Expect = 1.5e-109, Sum P(3) = 1.5e-109
Identities = 75/307 (24%), Positives = 137/307 (44%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
C+ + +Y G+L+ + QY D + G P+M+ + C+L + ++L
Sbjct: 148 CKLSARTYEGELLIKINRQYKDE---IASTTICAGHIPIMIMSNLCNLSNLNKKELAQKG 204
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ + +GG+F+++G +V R VI PK N +++ ++ D + I C+ D +
Sbjct: 205 EDQSLLGGFFVVSGRLKVIRYVIHPKYN---TLLLNA---------DNKIHINCLLNDNT 252
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE-IFNHLTCCYDEK--YK 214
V L N S GF Q LP ++L L IFN + + + K
Sbjct: 253 VVINFLTLTRNNSYVYGFRFQNAVCSLPFHLLLMILSPIKKKSYIFNKIKLGVENENAIK 312
Query: 215 KEKGAVGSPLVSERV-KIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
+ + S + + + L E +LS R+ L+ G I Y A+
Sbjct: 313 YIELFINSIFLKDTFNEKELFEKYNLSYLGRIAYLRR-G------IFKYNLNCYEKKAKD 365
Query: 274 VIRDYIFVHLNDNNDKFNLLIFMLQKL----FSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+++ I H+ +N++KF + FM +KL F L+ T + N DSL+N + +L+
Sbjct: 366 ILKYCILPHIKNNSEKFETMCFMFKKLIYSNFKLI--TPI--NKDSLENHAVTTCSNLLA 421
Query: 330 IYLKEKL 336
LK+++
Sbjct: 422 NLLKDQV 428
Score = 39 (18.8 bits), Expect = 3.3e-38, Sum P(3) = 3.3e-38
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 771 DAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
D +++ ++DS + Y+G+ Y Y K N + S
Sbjct: 678 DDENIPIIVDSIPITYIGEKDFNRTVYKLKYAKNNNLFNLKS 719
Score = 38 (18.4 bits), Expect = 4.2e-38, Sum P(3) = 4.2e-38
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 771 DAKSLHSVIDSDGLPYV 787
D +H++ D + +P +
Sbjct: 669 DTSGIHTIYDDENIPII 685
>CGD|CAL0002357 [details] [associations]
symbol:orf19.5847 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 CGD:CAL0002357
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710802.1 RefSeq:XP_710813.1 STRING:Q59M52 GeneID:3647582
GeneID:3647593 KEGG:cal:CaO19.13269 KEGG:cal:CaO19.5847
Uniprot:Q59M52
Length = 1157
Score = 747 (268.0 bits), Expect = 8.4e-103, Sum P(5) = 8.4e-103
Identities = 178/449 (39%), Positives = 243/449 (54%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA-DQKLYHLQ 686
TH EI P +L VA L PY HNQSPRN YQC M KQ +G ++ +FR D LY +
Sbjct: 679 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG-AIAYNQFRRIDTLLYFMV 737
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
PQ P+V+T T D+ P G NA VAV++Y+GYD+EDA++LNK+S+DRG Q+ +
Sbjct: 738 YPQQPMVKTKTIELIEYDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCQVVR 797
Query: 747 TETIDLSDDGNKVD---RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
T+ L N G ++ NK H + DGL VG I G+ + +
Sbjct: 798 KNTVQLKKYPNHTQDILAGMRVDENNKPIFQ-HQALGPDGLGEVGSRIFNGQVFANKCVP 856
Query: 804 TTNSWRT----NSRKGSES-----VFV-----DYV-AVDMKNSKNLPQKANIRFRHTRNP 848
T + T ++ +ES F Y+ V M S N + R TR P
Sbjct: 857 TNSGDSTLGAQQEQRAAESHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQTRRP 916
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKFSSRHGQKGVC + D+PF+ +G+ PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 917 ELGDKFSSRHGQKGVCGIIVQQEDLPFND-SGISPDIIMNPHGFPSRMTVGKMIELISGK 975
Query: 909 GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
G L+G T F S + D SK L+++ GF+Y G ++LYSG+ G
Sbjct: 976 AGVLNGSLEYGTCFGGSKLE-------DMSKILIEK--------GFSYSGKDMLYSGITG 1020
Query: 969 TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSL 1028
L IF GP+YYQ+L+HMV DK R+ G +TRQP GEMERD +
Sbjct: 1021 ECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCV 1080
Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
+A+GA+ LL +RL SD DVC+ CG
Sbjct: 1081 IAYGASQLLLERLMISSDAFEVDVCNKCG 1109
Score = 161 (61.7 bits), Expect = 8.4e-103, Sum P(5) = 8.4e-103
Identities = 49/181 (27%), Positives = 89/181 (49%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ + DVE+ G ++R G+ PVML++ +C L+G + +
Sbjct: 117 CRLRDLTYSAPIYVDVEYT---RGRKIIRHNDLEIGRMPVMLRSNKCMLEGMSEATMAQV 173
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
+E + GGYF++NG E+V +++ +Q ++ + D ++G +V RK
Sbjct: 174 EECPLDPGGYFVVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSSTHERKS 228
Query: 156 QSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
++ V K YL + S+ ++ +P+ I+LKA +DLEI L C D Y
Sbjct: 229 KTYVITKNDKIYLKHNSI-------SED--IPIVIILKAAGIVSDLEILQ-LVCGSDSNY 278
Query: 214 K 214
+
Sbjct: 279 Q 279
Score = 161 (61.7 bits), Expect = 8.4e-103, Sum P(5) = 8.4e-103
Identities = 65/284 (22%), Positives = 127/284 (44%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ I+LKA +DLEI L C D Y+ + V + R+++ + +
Sbjct: 250 IPIVIILKAAGIVSDLEILQ-LVCGSDSNYQ-DLFVVNFEEAA-RLEVFTQQQALYYVGK 306
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSL 303
R++ ++ G P + LQ E A+A T+I ++ V +K + M +++
Sbjct: 307 RVKTIRRAGA---PKLSQLQ-EGIEAIATTIIA-HLTVSDLQFREKALYIATMARRVVMA 361
Query: 304 VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNL 363
+ + + D+ D + N+ + L G L+++ ++ + + K I ++ + +F L
Sbjct: 362 MHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDAL 421
Query: 364 ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
+I + N I + + TG + + +RAG T RL+++ +
Sbjct: 422 LSIN-IHSNN----ITMGLNRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTR 474
Query: 424 VHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHM 466
+ + F R S R L P +G LC TP+GE CGL+ ++
Sbjct: 475 I--SSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNL 516
Score = 76 (31.8 bits), Expect = 8.4e-103, Sum P(5) = 8.4e-103
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
C C++S+ + + +PY + L EL +MNI L+LGD
Sbjct: 1117 CTTCKSSENVIKMTIPYAAKLLFQELLSMNIAPRLRLGD 1155
Score = 50 (22.7 bits), Expect = 8.4e-103, Sum P(5) = 8.4e-103
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEM 34
F ++ LV+ H++S++Y +D L ++
Sbjct: 48 FLKVKGLVKQHLDSYNYFVDVDLKKI 73
Score = 38 (18.4 bits), Expect = 8.7e-75, Sum P(3) = 8.7e-75
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 4 KKSADFEPLRELVRHHIESFDYMLDEGLSEMFD 36
K E L +L+ SFD L GL E D
Sbjct: 623 KSKVTAEHLAKLINQEW-SFDDFLTHGLVEYLD 654
>ZFIN|ZDB-GENE-030131-2887 [details] [associations]
symbol:polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0031017 "exocrine pancreas development" evidence=IMP]
[GO:0048565 "digestive tract development" evidence=IMP] [GO:0009304
"tRNA transcription" evidence=IMP] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-030131-2887
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:BX465207 IPI:IPI00505191
Ensembl:ENSDART00000091466 ArrayExpress:F1QQA2 Bgee:F1QQA2
Uniprot:F1QQA2
Length = 1129
Score = 841 (301.1 bits), Expect = 7.1e-101, Sum P(3) = 7.1e-101
Identities = 267/857 (31%), Positives = 397/857 (46%)
Query: 233 LAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKF 290
L E Q + T+ Q L++IG Q + G E+ +A T++ ++ V + K
Sbjct: 269 LEECQKAQIFTQTQALRYIGNKVRRQRMWGGQMEEARELLASTILT-HVPVKEFNFRAKC 327
Query: 291 NLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDE 350
L M++++ V D D N+ + L G L+++ ++ + + + KK I D+
Sbjct: 328 IYLAVMVRRVILAQGDNKVDDR-DYYGNKRLELAGQLLSLLFEDLFKKFNSELKK-IADQ 385
Query: 351 IENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAE 410
I + F ++ K M ++ QI + + TG + + R G T
Sbjct: 386 IIPKQRAAQF----DVVKHMRQD---QITNGMVNAISTGNWSLKRFK--MDRQGVTQVLS 436
Query: 411 RLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTST 469
RL+F+ + + + F R S R L P WG LCP TP+GE CGL+ ++
Sbjct: 437 RLSFISALGMMTRI--SSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 494
Query: 470 CRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI 529
+ + + I+ + + +L G + P V V L+G ++GVI
Sbjct: 495 THITTDMEDGPIIKLAFNLGVEDVNLLCGEEL----------SYPTVFLVFLNGNILGVI 544
Query: 530 PSSEIEKVVAHLRRLK----VSAASVIPDDLEVGYVPLSL-GGAYPGLYLFTSPPKFVRP 584
+ +K+V R ++ ++ I +L V +S GG Y+ K
Sbjct: 545 --RDHQKLVYTFRLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKNGK--PA 600
Query: 585 VRNISLPSEESQNIELIGPF--EQVFMEIRCPDGGDGG-----RRNAFPATHEEIHPTGM 637
V+N + E SQ F E + + + D + TH EI P +
Sbjct: 601 VKNKHI-EELSQGYRTFEDFLHESLVEYLDVNEENDCNIALYEHMISKDTTHLEIEPFTL 659
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
L V A L PY HNQSPRN YQC M KQ MG + R D +Y L PQ P+V+T T
Sbjct: 660 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKT 719
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
++ P G NA VAV++Y+GYD+EDA++LNK+S+DRG +Y+ L N
Sbjct: 720 IELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTN 779
Query: 758 KV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYVG-QMIHPGEPYC--SIYDKTTNSWRTN 811
+ D+ G L + HS++D+DG+ G + + + S+ T +
Sbjct: 780 QTFDKVMGPMLDAETRKPIWRHSILDADGICSPGSEKVENKQVLVNKSMPTVTQTPLEGS 839
Query: 812 SRKGS---ESVFVDYV-AVD-----MKNSKNLPQK--ANIRFRHTRNPIIGDKFSSRHGQ 860
++ G V V Y A D + S N I R TR P IGDKFSSRHGQ
Sbjct: 840 AQPGQPQYREVPVSYKGATDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQ 899
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
KGVC + P DMPF +G+ PD+I+NPH +PSRMT+ L+E +A K G L G+F T
Sbjct: 900 KGVCGLIVPQEDMPFCD-SGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGT 958
Query: 921 PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
F S K D +++R G+NY G + + SG+ G L I+ GPV
Sbjct: 959 AFGGSKVK--------------DVCEDLIRY-GYNYQGKDYVTSGITGEPLEAYIYFGPV 1003
Query: 981 YYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDR 1040
YYQ+L+HMV DK R+ G +TRQP GEMERD L+ +GA+ LL +R
Sbjct: 1004 YYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLER 1063
Query: 1041 LHTCSDYHVADVCSLCG 1057
L SD DVC CG
Sbjct: 1064 LMISSDAFEVDVCGQCG 1080
Score = 125 (49.1 bits), Expect = 7.1e-101, Sum P(3) = 7.1e-101
Identities = 41/167 (24%), Positives = 79/167 (47%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 102 CRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFSKLN 159
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
E + GGYFI+ G E+V +++ +Q +S R R+G +V +K +
Sbjct: 160 ECPLDPGGYFIVKGQEKV---ILIQEQ---LSKNRIIVDQDRKGTVGASVTSSTHEKKSR 213
Query: 157 SSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
+++ +K +YL + ++ ++ P+ I+ KA+ +D EI
Sbjct: 214 TNMIVKQGRFYLKHNTL-------SED--APIAIIFKAMGVESDQEI 251
Score = 74 (31.1 bits), Expect = 1.6e-95, Sum P(3) = 1.6e-95
Identities = 33/126 (26%), Positives = 58/126 (46%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRER 68
F ++ LV+ HI+SF+Y ++ + ++ KI+ M +++ + G P V E
Sbjct: 33 FLKVKGLVKQHIDSFNYFINVEIKKIMK--ANEKITSDADPMWYLKYLNIYVGMPDVEES 90
Query: 69 FNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPM 128
FN + PV C L+ +++ E Y G +R+ R+ LP P+
Sbjct: 91 FNVTR-PV--SPHECRLRDMTYSAPITVDIE------Y--TRGSQRIIRNA-LPIGRMPI 138
Query: 129 SMVRSS 134
M+RSS
Sbjct: 139 -MLRSS 143
Score = 68 (29.0 bits), Expect = 7.1e-101, Sum P(3) = 7.1e-101
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
CH C++S + ++ +PY + L EL +MNI L+L
Sbjct: 1088 CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1124
>UNIPROTKB|E1BRJ4 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AADN02006293 EMBL:AADN02006294
EMBL:AADN02006295 IPI:IPI00580707 RefSeq:XP_416307.3
UniGene:Gga.54760 Ensembl:ENSGALT00000020649 GeneID:418071
KEGG:gga:418071 Uniprot:E1BRJ4
Length = 1132
Score = 830 (297.2 bits), Expect = 1.5e-100, Sum P(3) = 1.5e-100
Identities = 264/863 (30%), Positives = 402/863 (46%)
Query: 233 LAEVQDLSLTTRLQCLQHIGEHFQPV-IDGLQSESYYAVAETVIRDYIFVHLNDNNDKFN 291
L E Q + T++Q L++IG + + G ++ A ++ I H+ F
Sbjct: 269 LEECQKAQIFTQMQALKYIGNKVRRQRMWGGPKKTKMEEARELLASTILTHVLVKEFNFR 328
Query: 292 L-LIF---MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLI 347
I+ M++++ V D D N+ + L G L+++ ++ + + + KK I
Sbjct: 329 AKCIYTAVMVRRVILAQGENKVDDR-DYYGNKRLELAGQLLSLLFEDLFKKFNSELKK-I 386
Query: 348 QDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTV 407
D++ + F ++ K M ++ QI + + TG + + R G T
Sbjct: 387 ADQVIPKQRAAQF----DVVKHMRQD---QITNGMVNAISTGNWSLKRFK--MDRQGVTQ 437
Query: 408 QAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHM 466
RL+++ + + + F R S R L P WG LCP TP+GE CGL+ ++
Sbjct: 438 VLSRLSYISALGMMTRI--SSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 495
Query: 467 TSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVV 526
+ + + I+ S + + +L G + S P V V L+G ++
Sbjct: 496 ALMTHITTDMEDGPIIKLASNLGVEDVNLLCGEEL--SYPN--------VFLVFLNGNIL 545
Query: 527 GVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP-- 584
GVI + +K+V R ++ A I + +V +S + +Y+ + + RP
Sbjct: 546 GVI--RDHQKLVNTFRIMR--RAGYINE-----FVSISTNLSDRCVYISSDGGRLCRPYI 596
Query: 585 VRNISLPSEESQNIELIGP----FEQVFME--IRCPDGGDGGRRNAF--------PATHE 630
+ P+ ++++E + FE E + D + N TH
Sbjct: 597 IVKKQKPAVTNKHMEELAQGYRNFEDFLHEGLVEYLDVNEENDCNIALYEHTINKDTTHL 656
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
EI P +L V A L PY HNQSPRN YQC M KQ MG + R D +Y L PQ
Sbjct: 657 EIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQK 716
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
P+V+T T ++ P G NA VAV++Y+GYD+EDA++LNK+S+DRG +Y+
Sbjct: 717 PMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKC 776
Query: 751 DLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKTT 805
L N+ D+ G L + H ++D+DG+ G+ + + S+ T
Sbjct: 777 TLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQ 836
Query: 806 NSWRTNS---RKGSESVFVDYV-AVD-----MKNSKNLPQKANIRF--RHTRNPIIGDKF 854
+S + + V V Y A D + S N I+ R TR P IGDKF
Sbjct: 837 TPLEGSSVPQQPQYKDVPVTYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKF 896
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
SSRHGQKGVC + P DMPF TG+ PD+I+NPH FPSRMT+ L+E +A K G L G
Sbjct: 897 SSRHGQKGVCGLIVPQEDMPFCD-TGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDG 955
Query: 915 KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
+F T F S K D +++R G+NY G + + SG+ G L
Sbjct: 956 RFHYGTAFGGSKVK--------------DVCEDLIRH-GYNYLGKDYVTSGITGEPLEAY 1000
Query: 975 IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAA 1034
I+ GPVYYQ+L+HMV DK R+ G +TRQP GEMERD L+ +GA+
Sbjct: 1001 IYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGAS 1060
Query: 1035 YLLHDRLHTCSDYHVADVCSLCG 1057
LL +RL SD DVC CG
Sbjct: 1061 MLLLERLMISSDAFEVDVCGQCG 1083
Score = 133 (51.9 bits), Expect = 1.5e-100, Sum P(3) = 1.5e-100
Identities = 41/167 (24%), Positives = 81/167 (48%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 102 CRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLN 159
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
E + GGYFI+ G+E+V +++ +Q +S R R+G +V +K +
Sbjct: 160 ECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIVEADRKGTVGASVTSSTHEKKSR 213
Query: 157 SSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
+++ +K +YL + ++ ++ +P+ I+ KA+ +D EI
Sbjct: 214 TNMVVKQGRFYLRHNTL-------SED--IPIAIIFKAMGVESDQEI 251
Score = 75 (31.5 bits), Expect = 1.8e-94, Sum P(3) = 1.8e-94
Identities = 32/126 (25%), Positives = 59/126 (46%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRER 68
F ++ LV+ HI+SF+Y ++ + ++ K++ M +++ + G+P V E
Sbjct: 33 FLKVKGLVKQHIDSFNYFINVEIKKIMK--ANEKVTSDADPMWYLKYLNIYVGTPDVEES 90
Query: 69 FNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPM 128
FN + PV C L+ +++ E Y G +R+ R+ LP P+
Sbjct: 91 FNVTR-PV--SPHECRLRDMTYSAPITVDIE------Y--TRGSQRIIRNA-LPIGRMPI 138
Query: 129 SMVRSS 134
M+RSS
Sbjct: 139 -MLRSS 143
Score = 68 (29.0 bits), Expect = 1.5e-100, Sum P(3) = 1.5e-100
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
CH C++S + ++ +PY + L EL +MNI L+L
Sbjct: 1091 CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1127
>MGI|MGI:1917678 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0045087
"innate immune response" evidence=IEA] [GO:0045089 "positive
regulation of innate immune response" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:1917678 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND EMBL:BC044796 EMBL:BC068143 EMBL:AK039366
IPI:IPI00410871 RefSeq:NP_081699.1 UniGene:Mm.335007
ProteinModelPortal:P59470 STRING:P59470 PhosphoSite:P59470
PaxDb:P59470 PRIDE:P59470 Ensembl:ENSMUST00000077175 GeneID:70428
KEGG:mmu:70428 UCSC:uc007gku.1 InParanoid:P59470 NextBio:331603
Bgee:P59470 CleanEx:MM_POLR3B Genevestigator:P59470
GermOnline:ENSMUSG00000034453 Uniprot:P59470
Length = 1133
Score = 825 (295.5 bits), Expect = 1.0e-99, Sum P(3) = 1.0e-99
Identities = 261/865 (30%), Positives = 398/865 (46%)
Query: 233 LAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKF 290
L E Q + T++Q L++IG Q + G ++ A ++ I H+ F
Sbjct: 269 LEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNF 328
Query: 291 NL-LIF---MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKL 346
I+ M++++ V D D N+ + L G L+++ ++ + + + KK
Sbjct: 329 RAKCIYTAVMVRRVILAQGDNKVDDR-DYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK- 386
Query: 347 IQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYT 406
I D++ + F ++ K M ++ QI + + TG + + R G T
Sbjct: 387 IADQVIPKQRAAQF----DVVKHMRQD---QITNGMVNAISTGNWSLKRFK--MDRQGVT 437
Query: 407 VQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNH 465
RL+++ + + + F R S R L P WG LCP TP+GE CGL+ +
Sbjct: 438 QVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 495
Query: 466 MTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRV 525
+ + + + I+ + + +L G + S P V V L+G +
Sbjct: 496 LALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEEL--SYPN--------VFLVFLNGNI 545
Query: 526 VGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP- 584
+GVI + +K+V+ R ++ A I + +V +S +Y+ + + RP
Sbjct: 546 LGVI--RDHKKLVSTFRLMR--RAGYINE-----FVSISTNLTDRCVYISSDGGRLCRPY 596
Query: 585 -VRNISLPSEESQNIELIGP----FEQVFME--IRCPDGGDGGRRNAF--------PATH 629
+ P+ ++++E + FE E + D + N TH
Sbjct: 597 IIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTH 656
Query: 630 EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
EI P +L V A L PY HNQSPRN YQC M KQ MG + R D +Y L PQ
Sbjct: 657 LEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQ 716
Query: 690 TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
P+V+T T ++ P G NA VAV++Y+GYD+EDA++LNK+S+DRG +Y+
Sbjct: 717 KPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAK 776
Query: 750 IDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-T 805
L N+ D+ G L + H ++D+DG+ G+ + + + T T
Sbjct: 777 CTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVT 836
Query: 806 NSWRTNSRKGSESVFVDYVAVDMKNSKN-------LPQKANIRF------RHTRNPIIGD 852
S + + D V + K + + + A F R TR P IGD
Sbjct: 837 QIPLEGSNVPQQPQYKD-VPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGD 895
Query: 853 KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
KFSSRHGQKGVC + P DMPF +G+ PD+I+NPH FPSRMT+ L+E +A K G L
Sbjct: 896 KFSSRHGQKGVCGLIVPQEDMPFCD-SGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVL 954
Query: 913 HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
G+F T F S K D + LV G+NY G + + SG+ G L
Sbjct: 955 DGRFHYGTAFGGSKVK-------DVCEDLVRH--------GYNYLGKDYVTSGITGEPLE 999
Query: 973 CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHG 1032
I+ GPVYYQ+L+HMV DK R+ G +TRQP GEMERD L+ +G
Sbjct: 1000 AYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYG 1059
Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCG 1057
A+ LL +RL SD DVC CG
Sbjct: 1060 ASMLLLERLMISSDAFEVDVCGQCG 1084
Score = 130 (50.8 bits), Expect = 1.0e-99, Sum P(3) = 1.0e-99
Identities = 41/167 (24%), Positives = 81/167 (48%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 102 CRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLN 159
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
E + GGYFI+ G+E+V +++ +Q +S R R+G +V +K +
Sbjct: 160 ECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIVEADRKGAVGASVTSSTHEKKSR 213
Query: 157 SSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
+++ +K +YL + ++ ++ +P+ I+ KA+ +D EI
Sbjct: 214 TNMAVKQGRFYLRHNTL-------SED--IPIVIIFKAMGVESDQEI 251
Score = 72 (30.4 bits), Expect = 1.3e-93, Sum P(3) = 1.3e-93
Identities = 32/126 (25%), Positives = 58/126 (46%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRER 68
F ++ LV+ HI+SF+Y ++ + ++ K++ M +++ + G P V E
Sbjct: 33 FLKVKGLVKQHIDSFNYFINVEIKKIMK--ANEKVTSDADPMWYLKYLNIYVGLPDVEES 90
Query: 69 FNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPM 128
FN + PV C L+ +++ E Y G +R+ R+ LP P+
Sbjct: 91 FNVTR-PV--SPHECRLRDMTYSAPITVDIE------Y--TRGSQRIIRNA-LPIGRMPI 138
Query: 129 SMVRSS 134
M+RSS
Sbjct: 139 -MLRSS 143
Score = 68 (29.0 bits), Expect = 1.0e-99, Sum P(3) = 1.0e-99
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
CH C++S + ++ +PY + L EL +MNI L+L
Sbjct: 1092 CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1128
>RGD|1565311 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed) polypeptide
B" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA;ISO]
[GO:0045089 "positive regulation of innate immune response"
evidence=IEA;ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1565311 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND IPI:IPI00365981 RefSeq:NP_001178807.1
UniGene:Rn.37546 Ensembl:ENSRNOT00000009746 GeneID:362858
KEGG:rno:362858 UCSC:RGD:1565311 NextBio:681550 Uniprot:D3ZV30
Length = 1133
Score = 825 (295.5 bits), Expect = 1.0e-99, Sum P(3) = 1.0e-99
Identities = 261/865 (30%), Positives = 398/865 (46%)
Query: 233 LAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKF 290
L E Q + T++Q L++IG Q + G ++ A ++ I H+ F
Sbjct: 269 LEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNF 328
Query: 291 NL-LIF---MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKL 346
I+ M++++ V D D N+ + L G L+++ ++ + + + KK
Sbjct: 329 RAKCIYTAVMVRRVILAQGDNKVDDR-DYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK- 386
Query: 347 IQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYT 406
I D++ + F ++ K M ++ QI + + TG + + R G T
Sbjct: 387 IADQVIPKQRAAQF----DVVKHMRQD---QITNGMVNAISTGNWSLKRFK--MDRQGVT 437
Query: 407 VQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNH 465
RL+++ + + + F R S R L P WG LCP TP+GE CGL+ +
Sbjct: 438 QVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 495
Query: 466 MTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRV 525
+ + + + I+ + + +L G + S P V V L+G +
Sbjct: 496 LALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEEL--SYPN--------VFLVFLNGNI 545
Query: 526 VGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP- 584
+GVI + +K+V+ R ++ A I + +V +S +Y+ + + RP
Sbjct: 546 LGVI--RDHKKLVSTFRLMR--RAGYINE-----FVSISTNLTDRCVYISSDGGRLCRPY 596
Query: 585 -VRNISLPSEESQNIELIGP----FEQVFME--IRCPDGGDGGRRNAF--------PATH 629
+ P+ ++++E + FE E + D + N TH
Sbjct: 597 IIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTH 656
Query: 630 EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
EI P +L V A L PY HNQSPRN YQC M KQ MG + R D +Y L PQ
Sbjct: 657 LEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQ 716
Query: 690 TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
P+V+T T ++ P G NA VAV++Y+GYD+EDA++LNK+S+DRG +Y+
Sbjct: 717 KPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAK 776
Query: 750 IDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-T 805
L N+ D+ G L + H ++D+DG+ G+ + + + T T
Sbjct: 777 CTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVT 836
Query: 806 NSWRTNSRKGSESVFVDYVAVDMKNSKN-------LPQKANIRF------RHTRNPIIGD 852
S + + D V + K + + + A F R TR P IGD
Sbjct: 837 QIPLEGSNVPQQPQYKD-VPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGD 895
Query: 853 KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
KFSSRHGQKGVC + P DMPF +G+ PD+I+NPH FPSRMT+ L+E +A K G L
Sbjct: 896 KFSSRHGQKGVCGLIVPQEDMPFCD-SGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVL 954
Query: 913 HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
G+F T F S K D + LV G+NY G + + SG+ G L
Sbjct: 955 DGRFHYGTAFGGSKVK-------DVCEDLVRH--------GYNYLGKDYVTSGITGEPLE 999
Query: 973 CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHG 1032
I+ GPVYYQ+L+HMV DK R+ G +TRQP GEMERD L+ +G
Sbjct: 1000 AYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYG 1059
Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCG 1057
A+ LL +RL SD DVC CG
Sbjct: 1060 ASMLLLERLMISSDAFEVDVCGQCG 1084
Score = 130 (50.8 bits), Expect = 1.0e-99, Sum P(3) = 1.0e-99
Identities = 41/167 (24%), Positives = 81/167 (48%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 102 CRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLN 159
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
E + GGYFI+ G+E+V +++ +Q +S R R+G +V +K +
Sbjct: 160 ECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIVEADRKGAVGASVTSSTHEKKSR 213
Query: 157 SSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
+++ +K +YL + ++ ++ +P+ I+ KA+ +D EI
Sbjct: 214 TNMAVKQGRFYLRHNTL-------SED--IPIVIIFKAMGVESDQEI 251
Score = 72 (30.4 bits), Expect = 1.3e-93, Sum P(3) = 1.3e-93
Identities = 32/126 (25%), Positives = 58/126 (46%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRER 68
F ++ LV+ HI+SF+Y ++ + ++ K++ M +++ + G P V E
Sbjct: 33 FLKVKGLVKQHIDSFNYFINVEIKKIMK--ANEKVTSDADPMWYLKYLNIYVGLPDVEES 90
Query: 69 FNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPM 128
FN + PV C L+ +++ E Y G +R+ R+ LP P+
Sbjct: 91 FNVTR-PV--SPHECRLRDMTYSAPITVDIE------Y--TRGSQRIIRNA-LPIGRMPI 138
Query: 129 SMVRSS 134
M+RSS
Sbjct: 139 -MLRSS 143
Score = 68 (29.0 bits), Expect = 1.0e-99, Sum P(3) = 1.0e-99
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
CH C++S + ++ +PY + L EL +MNI L+L
Sbjct: 1092 CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1128
>UNIPROTKB|E1BPX6 [details] [associations]
symbol:POLR3B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:DAAA02013740 EMBL:DAAA02013741
EMBL:DAAA02013742 IPI:IPI00924128 RefSeq:NP_001179718.1
UniGene:Bt.42818 Ensembl:ENSBTAT00000038043 GeneID:540839
KEGG:bta:540839 NextBio:20878865 ArrayExpress:E1BPX6 Uniprot:E1BPX6
Length = 1133
Score = 824 (295.1 bits), Expect = 3.8e-99, Sum P(3) = 3.8e-99
Identities = 261/865 (30%), Positives = 398/865 (46%)
Query: 233 LAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKF 290
L E Q + T++Q L++IG Q + G ++ A ++ I H+ F
Sbjct: 269 LEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNF 328
Query: 291 NL-LIF---MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKL 346
I+ M++++ V D D N+ + L G L+++ ++ + + + KK
Sbjct: 329 RAKCIYTAVMVRRVILAQGDNKVDDR-DYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK- 386
Query: 347 IQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYT 406
I D++ + F ++ K M ++ QI + + TG + + R G T
Sbjct: 387 IADQVIPKQRAAQF----DVVKHMRQD---QITNGMVNAISTGNWSLKRFK--MDRQGVT 437
Query: 407 VQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNH 465
RL+++ + + + F R S R L P WG LCP TP+GE CGL+ +
Sbjct: 438 QVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 495
Query: 466 MTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRV 525
+ + + + ++ S + + +L G + S P V V L+G +
Sbjct: 496 LALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEEL--SYPN--------VFLVFLNGNI 545
Query: 526 VGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP- 584
+GVI + +K+V R ++ A I + +V +S +Y+ + + RP
Sbjct: 546 LGVI--RDHKKLVNTFRLMR--RAGYINE-----FVSISTNLTDRCVYISSDGGRLCRPY 596
Query: 585 -VRNISLPSEESQNIELIGP----FEQVFME--IRCPDGGDGGRRNAF--------PATH 629
+ P+ ++++E + FE E + D + N TH
Sbjct: 597 IIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTH 656
Query: 630 EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
EI P +L V A L PY HNQSPRN YQC M KQ MG + R D +Y L PQ
Sbjct: 657 LEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQ 716
Query: 690 TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
P+V+T T ++ P G NA VAV++Y+GYD+EDA++LNK+S+DRG +Y+
Sbjct: 717 KPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAK 776
Query: 750 IDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-T 805
L N+ D+ G L + H ++D+DG+ G+ + + + T T
Sbjct: 777 CTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVT 836
Query: 806 NSWRTNSRKGSESVFVDYVAVDMKNSKN-------LPQKANIRF------RHTRNPIIGD 852
S + + D V + K + + + A F R TR P IGD
Sbjct: 837 QIPLEGSNVPQQPQYKD-VPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGD 895
Query: 853 KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
KFSSRHGQKGVC + P DMPF +G+ PD+I+NPH FPSRMT+ L+E +A K G L
Sbjct: 896 KFSSRHGQKGVCGLIVPQEDMPFCD-SGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVL 954
Query: 913 HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
G+F T F S K D + LV G+NY G + + SG+ G L
Sbjct: 955 DGRFHYGTAFGGSKVK-------DVCEDLVRH--------GYNYLGKDYVTSGITGEPLE 999
Query: 973 CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHG 1032
I+ GPVYYQ+L+HMV DK R+ G +TRQP GEMERD L+ +G
Sbjct: 1000 AYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYG 1059
Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCG 1057
A+ LL +RL SD DVC CG
Sbjct: 1060 ASMLLLERLMISSDAFEVDVCGQCG 1084
Score = 130 (50.8 bits), Expect = 3.8e-99, Sum P(3) = 3.8e-99
Identities = 41/167 (24%), Positives = 81/167 (48%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 102 CRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLN 159
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
E + GGYFI+ G+E+V +++ +Q +S R R+G +V +K +
Sbjct: 160 ECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIVEADRKGTVGASVTSSTHEKKSR 213
Query: 157 SSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
+++ +K +YL + ++ ++ +P+ I+ KA+ +D EI
Sbjct: 214 TNMAVKQGRFYLRHNTL-------SED--IPIVIIFKAMGVESDQEI 251
Score = 72 (30.4 bits), Expect = 4.8e-93, Sum P(3) = 4.8e-93
Identities = 32/126 (25%), Positives = 58/126 (46%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRER 68
F ++ LV+ HI+SF+Y ++ + ++ K++ M +++ + G P V E
Sbjct: 33 FLKVKGLVKQHIDSFNYFINVEIKKIMK--ANEKVTSDADPMWYLKYLNIYVGLPDVEES 90
Query: 69 FNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPM 128
FN + PV C L+ +++ E Y G +R+ R+ LP P+
Sbjct: 91 FNVTR-PV--SPHECRLRDMTYSAPITVDIE------Y--TRGSQRIIRNA-LPIGRMPI 138
Query: 129 SMVRSS 134
M+RSS
Sbjct: 139 -MLRSS 143
Score = 68 (29.0 bits), Expect = 3.8e-99, Sum P(3) = 3.8e-99
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
CH C++S + ++ +PY + L EL +MNI L+L
Sbjct: 1092 CHFCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1128
>UNIPROTKB|E2RHZ2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0045089 "positive regulation of innate
immune response" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AAEX03007377 RefSeq:XP_531760.2
Ensembl:ENSCAFT00000002941 GeneID:474531 KEGG:cfa:474531
NextBio:20850526 Uniprot:E2RHZ2
Length = 1133
Score = 824 (295.1 bits), Expect = 3.8e-99, Sum P(3) = 3.8e-99
Identities = 261/865 (30%), Positives = 398/865 (46%)
Query: 233 LAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKF 290
L E Q + T++Q L++IG Q + G ++ A ++ I H+ F
Sbjct: 269 LEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNF 328
Query: 291 NL-LIF---MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKL 346
I+ M++++ V D D N+ + L G L+++ ++ + + + KK
Sbjct: 329 RAKCIYTAVMVRRVILAQGDNKVDDR-DYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK- 386
Query: 347 IQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYT 406
I D++ + F ++ K M ++ QI + + TG + + R G T
Sbjct: 387 IADQVIPKQRAAQF----DVVKHMRQD---QITNGMVNAISTGNWSLKRFK--MDRQGVT 437
Query: 407 VQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNH 465
RL+++ + + + F R S R L P WG LCP TP+GE CGL+ +
Sbjct: 438 QVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 495
Query: 466 MTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRV 525
+ + + + ++ S + + +L G + S P V V L+G +
Sbjct: 496 LALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEEL--SYPN--------VFLVFLNGNI 545
Query: 526 VGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP- 584
+GVI + +K+V R ++ A I + +V +S +Y+ + + RP
Sbjct: 546 LGVI--RDHKKLVNTFRLMR--RAGYINE-----FVSISTNLTDRCVYISSDGGRLCRPY 596
Query: 585 -VRNISLPSEESQNIELIGP----FEQVFME--IRCPDGGDGGRRNAF--------PATH 629
+ P+ ++++E + FE E + D + N TH
Sbjct: 597 IIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTH 656
Query: 630 EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
EI P +L V A L PY HNQSPRN YQC M KQ MG + R D +Y L PQ
Sbjct: 657 LEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQ 716
Query: 690 TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
P+V+T T ++ P G NA VAV++Y+GYD+EDA++LNK+S+DRG +Y+
Sbjct: 717 KPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAK 776
Query: 750 IDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-T 805
L N+ D+ G L + H ++D+DG+ G+ + + + T T
Sbjct: 777 CTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVT 836
Query: 806 NSWRTNSRKGSESVFVDYVAVDMKNSKN-------LPQKANIRF------RHTRNPIIGD 852
S + + D V + K + + + A F R TR P IGD
Sbjct: 837 QIPLEGSNVPQQPQYKD-VPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGD 895
Query: 853 KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
KFSSRHGQKGVC + P DMPF +G+ PD+I+NPH FPSRMT+ L+E +A K G L
Sbjct: 896 KFSSRHGQKGVCGLIVPQEDMPFCD-SGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVL 954
Query: 913 HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
G+F T F S K D + LV G+NY G + + SG+ G L
Sbjct: 955 DGRFHYGTAFGGSKVK-------DVCEDLVRH--------GYNYLGKDFVTSGITGEPLE 999
Query: 973 CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHG 1032
I+ GPVYYQ+L+HMV DK R+ G +TRQP GEMERD L+ +G
Sbjct: 1000 AYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYG 1059
Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCG 1057
A+ LL +RL SD DVC CG
Sbjct: 1060 ASMLLLERLMISSDAFEVDVCGQCG 1084
Score = 130 (50.8 bits), Expect = 3.8e-99, Sum P(3) = 3.8e-99
Identities = 41/167 (24%), Positives = 81/167 (48%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 102 CRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLN 159
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
E + GGYFI+ G+E+V +++ +Q +S R R+G +V +K +
Sbjct: 160 ECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIVEADRKGTVGASVTSSTHEKKSR 213
Query: 157 SSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
+++ +K +YL + ++ ++ +P+ I+ KA+ +D EI
Sbjct: 214 TNMAVKQGRFYLRHNTL-------SED--IPIVIIFKAMGVESDQEI 251
Score = 72 (30.4 bits), Expect = 4.8e-93, Sum P(3) = 4.8e-93
Identities = 32/126 (25%), Positives = 58/126 (46%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRER 68
F ++ LV+ HI+SF+Y ++ + ++ K++ M +++ + G P V E
Sbjct: 33 FLKVKGLVKQHIDSFNYFINVEIKKIMK--ANEKVTSDADPMWYLKYLNIYVGLPDVEES 90
Query: 69 FNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPM 128
FN + PV C L+ +++ E Y G +R+ R+ LP P+
Sbjct: 91 FNVTR-PV--SPHECRLRDMTYSAPITVDIE------Y--TRGSQRIIRNA-LPIGRMPI 138
Query: 129 SMVRSS 134
M+RSS
Sbjct: 139 -MLRSS 143
Score = 68 (29.0 bits), Expect = 3.8e-99, Sum P(3) = 3.8e-99
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
CH C++S + ++ +PY + L EL +MNI L+L
Sbjct: 1092 CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1128
>UNIPROTKB|Q9NW08 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0045089 "positive regulation of innate
immune response" evidence=IMP] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0045087 EMBL:CH471054 GO:GO:0006351 GO:GO:0051607
GO:GO:0045089 Reactome:REACT_1788 GO:GO:0003899 GO:GO:0032728
GO:GO:0006386 GO:GO:0006385 EMBL:AC009721 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 Orphanet:88637 KO:K03021
OMA:DMIMNPH EMBL:AY092084 EMBL:AK001161 EMBL:AK001250 EMBL:AK122713
EMBL:AK291635 EMBL:AC078992 EMBL:AC080012 EMBL:BC046238
IPI:IPI00301346 IPI:IPI00930490 RefSeq:NP_001154180.1
RefSeq:NP_060552.4 UniGene:Hs.610795 UniGene:Hs.62696
ProteinModelPortal:Q9NW08 IntAct:Q9NW08 STRING:Q9NW08
PhosphoSite:Q9NW08 DMDM:29428029 PaxDb:Q9NW08 PRIDE:Q9NW08
Ensembl:ENST00000228347 Ensembl:ENST00000539066 GeneID:55703
KEGG:hsa:55703 UCSC:uc001tlp.3 CTD:55703 GeneCards:GC12P106751
H-InvDB:HIX0037055 HGNC:HGNC:30348 HPA:HPA036466 MIM:614366
MIM:614381 neXtProt:NX_Q9NW08 PharmGKB:PA134867680
InParanoid:Q9NW08 OrthoDB:EOG49ZXND PhylomeDB:Q9NW08
GenomeRNAi:55703 NextBio:60549 ArrayExpress:Q9NW08 Bgee:Q9NW08
CleanEx:HS_POLR3B Genevestigator:Q9NW08 GermOnline:ENSG00000013503
Uniprot:Q9NW08
Length = 1133
Score = 824 (295.1 bits), Expect = 3.8e-99, Sum P(3) = 3.8e-99
Identities = 261/865 (30%), Positives = 398/865 (46%)
Query: 233 LAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKF 290
L E Q + T++Q L++IG Q + G ++ A ++ I H+ F
Sbjct: 269 LEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNF 328
Query: 291 NL-LIF---MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKL 346
I+ M++++ V D D N+ + L G L+++ ++ + + + KK
Sbjct: 329 RAKCIYTAVMVRRVILAQGDNKVDDR-DYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK- 386
Query: 347 IQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYT 406
I D++ + F ++ K M ++ QI + + TG + + R G T
Sbjct: 387 IADQVIPKQRAAQF----DVVKHMRQD---QITNGMVNAISTGNWSLKRFK--MDRQGVT 437
Query: 407 VQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNH 465
RL+++ + + + F R S R L P WG LCP TP+GE CGL+ +
Sbjct: 438 QVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 495
Query: 466 MTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRV 525
+ + + + ++ S + + +L G + S P V V L+G +
Sbjct: 496 LALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEEL--SYPN--------VFLVFLNGNI 545
Query: 526 VGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP- 584
+GVI + +K+V R ++ A I + +V +S +Y+ + + RP
Sbjct: 546 LGVI--RDHKKLVNTFRLMR--RAGYINE-----FVSISTNLTDRCVYISSDGGRLCRPY 596
Query: 585 -VRNISLPSEESQNIELIGP----FEQVFME--IRCPDGGDGGRRNAF--------PATH 629
+ P+ ++++E + FE E + D + N TH
Sbjct: 597 IIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTH 656
Query: 630 EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
EI P +L V A L PY HNQSPRN YQC M KQ MG + R D +Y L PQ
Sbjct: 657 LEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQ 716
Query: 690 TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
P+V+T T ++ P G NA VAV++Y+GYD+EDA++LNK+S+DRG +Y+
Sbjct: 717 KPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAK 776
Query: 750 IDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-T 805
L N+ D+ G L + H ++D+DG+ G+ + + + T T
Sbjct: 777 CTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVT 836
Query: 806 NSWRTNSRKGSESVFVDYVAVDMKNSKN-------LPQKANIRF------RHTRNPIIGD 852
S + + D V + K + + + A F R TR P IGD
Sbjct: 837 QIPLEGSNVPQQPQYKD-VPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGD 895
Query: 853 KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
KFSSRHGQKGVC + P DMPF +G+ PD+I+NPH FPSRMT+ L+E +A K G L
Sbjct: 896 KFSSRHGQKGVCGLIVPQEDMPFCD-SGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVL 954
Query: 913 HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
G+F T F S K D + LV G+NY G + + SG+ G L
Sbjct: 955 DGRFHYGTAFGGSKVK-------DVCEDLVRH--------GYNYLGKDYVTSGITGEPLE 999
Query: 973 CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHG 1032
I+ GPVYYQ+L+HMV DK R+ G +TRQP GEMERD L+ +G
Sbjct: 1000 AYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYG 1059
Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCG 1057
A+ LL +RL SD DVC CG
Sbjct: 1060 ASMLLLERLMISSDAFEVDVCGQCG 1084
Score = 130 (50.8 bits), Expect = 3.8e-99, Sum P(3) = 3.8e-99
Identities = 41/167 (24%), Positives = 81/167 (48%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 102 CRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLN 159
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
E + GGYFI+ G+E+V +++ +Q +S R R+G +V +K +
Sbjct: 160 ECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIVEADRKGAVGASVTSSTHEKKSR 213
Query: 157 SSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
+++ +K +YL + ++ ++ +P+ I+ KA+ +D EI
Sbjct: 214 TNMAVKQGRFYLRHNTL-------SED--IPIVIIFKAMGVESDQEI 251
Score = 72 (30.4 bits), Expect = 4.8e-93, Sum P(3) = 4.8e-93
Identities = 32/126 (25%), Positives = 58/126 (46%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRER 68
F ++ LV+ HI+SF+Y ++ + ++ K++ M +++ + G P V E
Sbjct: 33 FLKVKGLVKQHIDSFNYFINVEIKKIMK--ANEKVTSDADPMWYLKYLNIYVGLPDVEES 90
Query: 69 FNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPM 128
FN + PV C L+ +++ E Y G +R+ R+ LP P+
Sbjct: 91 FNVTR-PV--SPHECRLRDMTYSAPITVDIE------Y--TRGSQRIIRNA-LPIGRMPI 138
Query: 129 SMVRSS 134
M+RSS
Sbjct: 139 -MLRSS 143
Score = 68 (29.0 bits), Expect = 3.8e-99, Sum P(3) = 3.8e-99
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
CH C++S + ++ +PY + L EL +MNI L+L
Sbjct: 1092 CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1128
>FB|FBgn0004463 [details] [associations]
symbol:RpIII128 "RNA polymerase III 128kD subunit"
species:7227 "Drosophila melanogaster" [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS;NAS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE013599 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
EMBL:X58826 EMBL:AY121645 PIR:S16894 RefSeq:NP_523706.1
UniGene:Dm.2692 ProteinModelPortal:P25167 SMR:P25167 IntAct:P25167
MINT:MINT-285299 STRING:P25167 PaxDb:P25167
EnsemblMetazoa:FBtr0087977 GeneID:36289 KEGG:dme:Dmel_CG8344
CTD:36289 FlyBase:FBgn0004463 GeneTree:ENSGT00690000102214
InParanoid:P25167 OMA:DMIMNPH OrthoDB:EOG4C2FRC PhylomeDB:P25167
ChiTaRS:RpIII128 GenomeRNAi:36289 NextBio:797763 Bgee:P25167
GermOnline:CG8344 Uniprot:P25167
Length = 1137
Score = 731 (262.4 bits), Expect = 7.7e-93, Sum P(4) = 7.7e-93
Identities = 182/460 (39%), Positives = 238/460 (51%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L V A L PY HNQSPRN YQC M KQ MG K R D +Y+L
Sbjct: 662 THLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVY 721
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
P P+V++ T D+ P G NA VAV++Y+GYD+EDA+ILNK+S+DRG +Y+
Sbjct: 722 PHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKN 781
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDA---KSL--HSVIDSDGLPYVGQMIHPGEPYCSIY 801
+ N+ DR + KDA K + H V+D+DG+ G+ + + +
Sbjct: 782 SKCTVKRYANQTFDR---IMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKE 838
Query: 802 DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQ-------KAN--------IRFRHTR 846
S N +G +S V Y AV + P AN I R TR
Sbjct: 839 MPAVTSM--NPLQG-QSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTR 895
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
P IGDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ LE +
Sbjct: 896 IPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDF-GICPDMIMNPHGFPSRMTVGKTLELLG 954
Query: 907 AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
K G L GKF T F S V+++ L GFNY G + YSG+
Sbjct: 955 GKAGLLEGKFHYGTAFGGSK---------------VEDIQAELERHGFNYVGKDFFYSGI 999
Query: 967 YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERD 1026
GT L I+ GPVYYQ+L+HMV DK R+ G +TRQP GEMERD
Sbjct: 1000 TGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERD 1059
Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIH 1066
L+++GA+ L+ +RL SD DVC CG + ++ H
Sbjct: 1060 CLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSWCH 1099
Score = 147 (56.8 bits), Expect = 7.7e-93, Sum P(4) = 7.7e-93
Identities = 61/259 (23%), Positives = 116/259 (44%)
Query: 233 LAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET---VIRDYIFVHLNDNNDK 289
L + +L + T+ + L+++G V+ QS + +E ++ I H+ +N
Sbjct: 276 LIDAYNLKVFTQQRALEYMGSKL--VVKRFQSATTKTPSEEARELLLTTILAHVPVDN-- 331
Query: 290 FNLLI------FMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE--KLEDWLR 341
FNL + M++++ + ++ D+ D N+ + L G L+++ ++ K +W
Sbjct: 332 FNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNW-- 389
Query: 342 KGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQ 401
K I D+ K F ++ K M + QI +E+ + +G + +
Sbjct: 390 -ELKTIADKNIPKVKAAQF----DVVKHMR---AAQITAGLESAISSGNWTIKRFK--ME 439
Query: 402 RAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPC 460
RAG T RL+++ + V+ + F R S R L P WG LCP TP+GE C
Sbjct: 440 RAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEAC 497
Query: 461 GLLNHMTSTCRVASYYDSR 479
GL+ ++ + + + R
Sbjct: 498 GLVKNLALMTHITTEVEER 516
Score = 113 (44.8 bits), Expect = 7.7e-93, Sum P(4) = 7.7e-93
Identities = 42/167 (25%), Positives = 69/167 (41%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ + D+E Y + R G+ P+ML+ C L G +L L
Sbjct: 110 CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYF++ G E+V +++ +Q M+ F G V K
Sbjct: 168 ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFN----GVVQCQVTSSTHEKKSR 220
Query: 158 SVTLKL---YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
++ L YYL + S+ +P+ ++ KAL +D EI
Sbjct: 221 TLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEI 258
Score = 80 (33.2 bits), Expect = 7.7e-93, Sum P(4) = 7.7e-93
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
CH CQ+S + ++MPY + L EL +MN+
Sbjct: 1098 CHFCQSSANVSKISMPYACKLLFQELTSMNV 1128
Score = 52 (23.4 bits), Expect = 1.8e-86, Sum P(4) = 1.8e-86
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEF--QYLDA--GSPV 64
F ++ LV+ HI+SF++ ++ + ++ + ++ +G AD F +YLD G P
Sbjct: 41 FLQVKGLVKQHIDSFNHFINVDIKKIV---KANELVTSG---ADPLFYLKYLDVRVGKPD 94
Query: 65 VRERFN 70
+ + FN
Sbjct: 95 IDDGFN 100
Score = 37 (18.1 bits), Expect = 7.3e-82, Sum P(5) = 7.3e-82
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 349 DEIENNGKKFDFFNLANIKKVMEKN 373
DE+ +KFD F L + + ++ N
Sbjct: 619 DELNRGIRKFDDFLLDGLIEYLDVN 643
Score = 37 (18.1 bits), Expect = 7.3e-82, Sum P(5) = 7.3e-82
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 189 VLKALVDTNDLEI-FNHLTCCYDEKYKKEKGAVGS 222
V ++ N L + NH + +Y + KG +GS
Sbjct: 543 VFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGS 577
>UNIPROTKB|F1NRJ5 [details] [associations]
symbol:F1NRJ5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00550000074993 EMBL:AADN02041199 IPI:IPI00820874
Ensembl:ENSGALT00000039028 Uniprot:F1NRJ5
Length = 760
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 208/545 (38%), Positives = 317/545 (58%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L Q+L+ EE EMGGYFI+NGLE+V R +I+P++N+P++M
Sbjct: 23 GFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGLEKVIRMLIMPRRNFPLAMT 82
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R +++R G+T+ VV+ CV+ + S++ + L+YL NG V + F Q + + LP+G LK
Sbjct: 83 RHKWKNRGPGFTEYGVVMHCVKDEHSAINMNLHYLENGCVMVNFIFQKELFFLPLGFALK 142
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV+ D +IF L K KK + V+E +L V + T+ L+++
Sbjct: 143 ALVNFTDYQIFEELV-----KDKKNDTFYVN-CVTE----MLRAVAEAGCYTQQNVLEYL 192
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
G+ F+ ++ + S A+ + I +HL D +KF LL M +KL + + D
Sbjct: 193 GKSFRVKLNLPEWYSNEQAADFIFNKCICIHLTDRTEKFYLLCMMTRKLCAFAKGECMED 252
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L G L ++LKE+LE+WL+ K +++ E K D N+ N +M+
Sbjct: 253 NPDSLMNQEVLTAGQLFLMFLKERLENWLQSVKFVLEKRTE----KADI-NI-NADSLMK 306
Query: 372 K-NPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
N + + S E +L TG L ++TGL + Q +G V ++LNF+R++S FR +HRG++F
Sbjct: 307 AFNMTTDVTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFVRYLSHFRCIHRGSAF 366
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
A +RTT+VRKLLPESWGFLCPV TPDGEPCGL+NHMT+ C + + + + T
Sbjct: 367 AQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCEI---------VTEMVPV-T 416
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPA-VLSVLLDGRVVGVIPSSEIEKVVAHLRRLK--VS 547
+ +L +G++P S P A VLLDG VVG + +V LRR K ++
Sbjct: 417 DLPPLLCALGVVPI--DATPSRPYAECYRVLLDGAVVGWVEWDLAPQVAEALRRFKKQIT 474
Query: 548 AASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
P EV +P++ YPGL++FT+P + VRPV+N+ +E IG EQ
Sbjct: 475 QEKRFPSRAEVVLIPMTGKPSLYPGLFIFTTPCRMVRPVKNLLYGRKE-----WIGTLEQ 529
Query: 607 VFMEI 611
VFM +
Sbjct: 530 VFMNV 534
Score = 633 (227.9 bits), Expect = 4.8e-61, P = 4.8e-61
Identities = 146/342 (42%), Positives = 200/342 (58%)
Query: 490 TSILRVLIGVGMIPSLPKLVKSGPPA-VLSVLLDGRVVGVIPSSEIEKVVAHLRRLK--V 546
T + +L +G++P S P A VLLDG VVG + +V LRR K +
Sbjct: 416 TDLPPLLCALGVVPI--DATPSRPYAECYRVLLDGAVVGWVEWDLAPQVAEALRRFKKQI 473
Query: 547 SAASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
+ P EV +P++ YPGL++FT+P + VRPV+N+ +E IG E
Sbjct: 474 TQEKRFPSRAEVVLIPMTGKPSLYPGLFIFTTPCRMVRPVKNLLYGRKE-----WIGTLE 528
Query: 606 QVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
QVFM + + + P TH+E+ P +LSVVANL P+SDHNQSPRNMYQCQM
Sbjct: 529 QVFMNVATMES------DVMPGVTTHQELFPHSILSVVANLIPFSDHNQSPRNMYQCQMG 582
Query: 664 KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
KQTMGF V K R+D KLY L TPQ+P+VR Y YG+D YP GTN++VAV++Y+GYD
Sbjct: 583 KQTMGFPVYNYKDRSDNKLYLLHTPQSPLVRPRMYDYYGMDSYPVGTNSVVAVISYSGYD 642
Query: 724 MEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKL-FRRNKDAKSLHSVIDSD 782
MEDAMI+NKSS +RG +G + + E+IDLS N+ G L F ++ +D+D
Sbjct: 643 MEDAMIVNKSSWERGFAYGSVIKMESIDLSLKANR--GGDNLVFGIRPGDPNVKEKLDAD 700
Query: 783 GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV 824
GLP+VG ++ PG+P+ S + T T + E VD +
Sbjct: 701 GLPFVGSILQPGDPFYSYMNLNTGETFTVYYQNKEVGIVDNI 742
>ASPGD|ASPL0000054387 [details] [associations]
symbol:AN0321 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:BN001308 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:DMIMNPH EnsemblFungi:CADANIAT00002388 Uniprot:C8VU19
Length = 1225
Score = 750 (269.1 bits), Expect = 5.0e-86, Sum P(4) = 5.0e-86
Identities = 179/449 (39%), Positives = 248/449 (55%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF-RADQKLYHLQ 686
TH EI P +L VA L PY HNQSPRN YQC M KQ +G ++ + +F R D LY +
Sbjct: 743 THMEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG-AIASNQFLRIDSILYLMV 801
Query: 687 TPQTPIVRTNTY--TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
PQ P+V++ T TKY D+ P G NA VAV++Y+GYD+EDA++LNK SVDRG Q+
Sbjct: 802 YPQKPMVKSRTIELTKY--DQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQV 859
Query: 745 YQTETIDLSD--DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC--SI 800
++ ++ +G K + + + H++++SDGL VG+ ++ GE Y S
Sbjct: 860 FRKYVTNMKSYSNGTKDILSPPTYENDAPIRK-HALLESDGLAAVGEQVNAGEVYINKST 918
Query: 801 YDKTTNSWRTNSRKGSESVF----VDYVAVD--------MKNSKNLPQKANIRFRHTRNP 848
D++ +S S G + + Y D + ++N Q + R TR P
Sbjct: 919 PDQSMSSGMPGSDAGRPISYNPTPMTYKLPDPAYIDKVMISATENENQIIKVLTRQTRRP 978
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 979 EVGDKFSSRHGQKGVTGIIVDQADMPFTD-QGINPDIIMNPHGFPSRMTVGKMLELVAGK 1037
Query: 909 GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
G L G+ T F+ GT V+++ + L GF+Y G + L SG+ G
Sbjct: 1038 AGVLSGQHGYGTCFS----------GTP-----VEQMTQTLIDKGFSYGGKDYLTSGITG 1082
Query: 969 TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSL 1028
L +F GP+YYQ+L+HMV DK R+ G +TRQP GEMERD L
Sbjct: 1083 EALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCL 1142
Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
+A+G + LL +RL SD H DVC CG
Sbjct: 1143 IAYGTSQLLLERLMISSDRHEVDVCEQCG 1171
Score = 135 (52.6 bits), Expect = 5.0e-86, Sum P(4) = 5.0e-86
Identities = 66/304 (21%), Positives = 135/304 (44%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKI-ILAEVQDLS-L 241
+P+ I+LKA+ D E+ L D+ Y+ E A+ E +K+ + + Q L +
Sbjct: 318 IPIVILLKAMGIHTDKEMML-LVAGVDKVYQ-EDFAIN---FEEAIKVGVFTQQQALDWI 372
Query: 242 TTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLF 301
+R++ + + + + E+ A+A +I +I V + K + M +++
Sbjct: 373 GSRIKINRKQMSYRRTHVQ----EAVEAIASVII-SHIEVKDMNFRPKAIYVANMARRVL 427
Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
+ ++ D+ D L N+ + L G L+ + ++ + + K I D++ N + + F
Sbjct: 428 MAKNDAALVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNI-DKVLNKRNRVEAF 486
Query: 362 NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
+ ++ M N I + + TG + + +RAG T RL+++ +
Sbjct: 487 DAWSVIG-MHSN---HITQGMNRAISTGNWSLKRFR--MERAGVTHVLSRLSYIAALGMM 540
Query: 422 RAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
+ + F R S R L P +G +C TP+GE CGL+ ++ + + D G
Sbjct: 541 TRI--SSQFEKTRKVSGPRALQPSQFGMICLADTPEGEACGLVKNLALMTHITTN-DEEG 597
Query: 481 NIRD 484
I++
Sbjct: 598 PIKN 601
Score = 122 (48.0 bits), Expect = 5.9e-86, Sum P(5) = 5.9e-86
Identities = 56/233 (24%), Positives = 102/233 (43%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y + D F+Y+ V R+ + G+ PVML++ +C L ++ L
Sbjct: 185 CRLRDTTYAAPIQVD--FEYIRGRQRVRRKGVSIGRMPVMLRSSKCVLGNKTPAQMTVLN 242
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+V IL ++ + + ++E RK +S
Sbjct: 243 ECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKS 298
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ LK L V+ + +P+ I+LKA+ D E+ L D+ Y+ E
Sbjct: 299 YIILKKDRLY---VKHNVLSED----IPIVILLKAMGIHTDKEMML-LVAGVDKVYQ-ED 349
Query: 218 GAVGSPLVSERVKI-ILAEVQDLS-LTTRLQC----LQHIGEHFQPVIDGLQS 264
A+ E +K+ + + Q L + +R++ + + H Q ++ + S
Sbjct: 350 FAIN---FEEAIKVGVFTQQQALDWIGSRIKINRKQMSYRRTHVQEAVEAIAS 399
Score = 73 (30.8 bits), Expect = 5.0e-86, Sum P(4) = 5.0e-86
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
C C++S+ + + +PY + L EL +MN+ L+L D
Sbjct: 1179 CQRCKSSRSVVKMVIPYAAKLLIQELMSMNVTARLKLED 1217
Score = 50 (22.7 bits), Expect = 5.0e-86, Sum P(4) = 5.0e-86
Identities = 8/28 (28%), Positives = 20/28 (71%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD 36
F ++ LV+ HI+S++Y+++ L ++ +
Sbjct: 110 FLKVKGLVKQHIDSYNYLVEVQLKKIVE 137
Score = 45 (20.9 bits), Expect = 5.9e-86, Sum P(5) = 5.9e-86
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
++ ++ TH + + SV+ + D N P+ +Y MA++ +
Sbjct: 381 KQMSYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMARRVL 427
>GENEDB_PFALCIPARUM|PFL0330c [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase III
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE014188 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA
RefSeq:XP_001350475.1 ProteinModelPortal:Q8I5X9
EnsemblProtists:PFL0330c:mRNA GeneID:811119 KEGG:pfa:PFL0330c
EuPathDB:PlasmoDB:PF3D7_1206600 ProtClustDB:CLSZ2444941
Uniprot:Q8I5X9
Length = 1450
Score = 454 (164.9 bits), Expect = 1.3e-84, Sum P(5) = 1.3e-84
Identities = 120/313 (38%), Positives = 165/313 (52%)
Query: 769 NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS------IYDKTT-------NSWRTNSRKG 815
NKD + HS +D DG+ +G +I G+ Y + I D N ++ N K
Sbjct: 1119 NKDIRKYHS-LDMDGVASIGYLIKEGQLYVNKFSPKNIKDHVKDIGKVDINDFKINEIK- 1176
Query: 816 SESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
+SV+ Y+ + + K I R TR P +GDKFSSRHGQKGV L DMP
Sbjct: 1177 YKSVYPSYIDKIIFTENSEGLKLYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMP 1236
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
F+ +G+ PDLI+NPH FPSRMT+ LLE VA+K + G++ + F+ G
Sbjct: 1237 FTE-SGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFS----------G 1285
Query: 935 TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
T +E+ E+L GFN E+LYSG+ G L IF+GP+YYQ+L+HMV DK
Sbjct: 1286 TP-----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIH 1340
Query: 995 VRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDY---HVAD 1051
R+ G +TRQP GEMERD L+A+G + LL +RL SD ++ +
Sbjct: 1341 ARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCNVYICE 1400
Query: 1052 VCSLCGSVLTATF 1064
C + G L TF
Sbjct: 1401 DCGMMGYDLYCTF 1413
Score = 408 (148.7 bits), Expect = 1.3e-84, Sum P(5) = 1.3e-84
Identities = 140/493 (28%), Positives = 233/493 (47%)
Query: 285 DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGK 344
D +K + M++++ ++ + D+ D N+ + L G LI++ ++ + + K
Sbjct: 555 DFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLK 614
Query: 345 KLIQDEIEN------NGKKFDFFNLAN--IKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
K I + N K N N V P I ++T + TG +
Sbjct: 615 KQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDIITRGMQTAISTGNWNIKRF 674
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTP 455
+++G + RL+F+ I ++ + F G + + R L P WG LCP TP
Sbjct: 675 K--MEKSGVSQVLSRLSFIACIGMMTRLN--SQFEKGRKVSGPRALQPSQWGVLCPCDTP 730
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP--KLVKSGP 513
+GE CGL+ ++ V + ++ N+ + IL L GV SL ++ K G
Sbjct: 731 EGESCGLVKNLALMTHVTNDNENNENLIE-------ILYTL-GVEDSDSLTGEEIYKEG- 781
Query: 514 PAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGYVPLSLGGAY- 569
V V+L+G ++GV P ++++ +LRR K+ I D+ + +S G
Sbjct: 782 --VFFVILNGILLGVHKRPQKFMQRI-RYLRRYGKIGQFVSIYDNFLHNAIYISTDGGRL 838
Query: 570 --PGLYLFTSP----PKFVRPVRNISLPSEE---SQNIELIGPFEQVFMEIRCPDGGDGG 620
P + + P+ ++ + N ++ + S IE I EQ + I +
Sbjct: 839 CRPLIIIENGKSKLLPQHIKALENGTINFFDLLKSSVIEWIDVNEQNNLLIALNESDI-- 896
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF-RAD 679
+ TH EI P +L VVA L PY +HNQSPRN YQC M KQ +G ++ +F R D
Sbjct: 897 ---SLSTTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAMGKQAIG-AIGYNQFVRCD 952
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
LY L PQ P+V++ T ++ P G NAIVAV+++ GYD+EDA+++NKSS+DRG
Sbjct: 953 TLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGF 1012
Query: 740 CHGQIYQTETIDL 752
+ +++L
Sbjct: 1013 GRCMSLRKHSVEL 1025
Score = 135 (52.6 bits), Expect = 1.3e-84, Sum P(5) = 1.3e-84
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ ++Y+ + DVE Y+ S + + G+ PVML++ C L ++L+ L
Sbjct: 319 CRQRDLTYSAPIYVDVE--YVKGNSIITKNNVEIGRLPVMLRSDICVLNNKSEEELMKLG 376
Query: 98 EEAAEMGGYFILNGLERV 115
E + GGYFI+ G ERV
Sbjct: 377 ECPYDPGGYFIVKGTERV 394
Score = 55 (24.4 bits), Expect = 2.7e-76, Sum P(5) = 2.7e-76
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE 67
++ LV+ HIES++Y + + + + I VEF + G+P V E
Sbjct: 252 VKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEHFYVEFLDITVGTPSVEE 307
Score = 54 (24.1 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
Identities = 24/128 (18%), Positives = 56/128 (43%)
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN-- 318
G + +++ + E +D ++ ND+N + I ++K + + ++N ++ N
Sbjct: 81 GNEEDTHIKIEEEKNKDNLYECKNDDNKFYESKINFIKKQDEANNEDNNNNNNNNNNNCY 140
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK-VMEKNPSKQ 377
HL K ++ + K+++DE + K F+ N+ N+K+ + +N +
Sbjct: 141 YNNYENKHLNIFNNKNEVNNKNLSSNKILKDEYYD--KNFNEDNINNLKEFIHNENKKPK 198
Query: 378 IGTSIETM 385
G M
Sbjct: 199 TGKLYNNM 206
Score = 48 (22.0 bits), Expect = 1.3e-84, Sum P(5) = 1.3e-84
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C+ + MPY + L EL MN+
Sbjct: 1411 CTFCKKCDKNIVIQMPYACKLLFQELQTMNV 1441
Score = 43 (20.2 bits), Expect = 1.3e-84, Sum P(5) = 1.3e-84
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 176 WLQGKEYLLPVG--IVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIIL 233
+L+ ++ +G I+L+A+ +D EIF + K V L+S L
Sbjct: 441 YLKHNSFIEDIGVCIILRAMGYESDQEIFQMIG--------SHKNYVNGILLS------L 486
Query: 234 AEVQDLSLTTRLQCLQHIGEHFQP 257
E+ + ++ T L L +IG+ +P
Sbjct: 487 YELYNENIKTNLDALLYIGKKIRP 510
Score = 39 (18.8 bits), Expect = 2.2e-46, Sum P(4) = 2.2e-46
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 150 RCVRKDQSSVTLKLYYLLNGS 170
RC+ + SV LK Y+ NGS
Sbjct: 1014 RCMSLRKHSVELKKYF--NGS 1032
>UNIPROTKB|Q8I5X9 [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014188 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA RefSeq:XP_001350475.1
ProteinModelPortal:Q8I5X9 EnsemblProtists:PFL0330c:mRNA
GeneID:811119 KEGG:pfa:PFL0330c EuPathDB:PlasmoDB:PF3D7_1206600
ProtClustDB:CLSZ2444941 Uniprot:Q8I5X9
Length = 1450
Score = 454 (164.9 bits), Expect = 1.3e-84, Sum P(5) = 1.3e-84
Identities = 120/313 (38%), Positives = 165/313 (52%)
Query: 769 NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS------IYDKTT-------NSWRTNSRKG 815
NKD + HS +D DG+ +G +I G+ Y + I D N ++ N K
Sbjct: 1119 NKDIRKYHS-LDMDGVASIGYLIKEGQLYVNKFSPKNIKDHVKDIGKVDINDFKINEIK- 1176
Query: 816 SESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
+SV+ Y+ + + K I R TR P +GDKFSSRHGQKGV L DMP
Sbjct: 1177 YKSVYPSYIDKIIFTENSEGLKLYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMP 1236
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
F+ +G+ PDLI+NPH FPSRMT+ LLE VA+K + G++ + F+ G
Sbjct: 1237 FTE-SGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFS----------G 1285
Query: 935 TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
T +E+ E+L GFN E+LYSG+ G L IF+GP+YYQ+L+HMV DK
Sbjct: 1286 TP-----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIH 1340
Query: 995 VRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDY---HVAD 1051
R+ G +TRQP GEMERD L+A+G + LL +RL SD ++ +
Sbjct: 1341 ARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCNVYICE 1400
Query: 1052 VCSLCGSVLTATF 1064
C + G L TF
Sbjct: 1401 DCGMMGYDLYCTF 1413
Score = 408 (148.7 bits), Expect = 1.3e-84, Sum P(5) = 1.3e-84
Identities = 140/493 (28%), Positives = 233/493 (47%)
Query: 285 DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGK 344
D +K + M++++ ++ + D+ D N+ + L G LI++ ++ + + K
Sbjct: 555 DFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLK 614
Query: 345 KLIQDEIEN------NGKKFDFFNLAN--IKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
K I + N K N N V P I ++T + TG +
Sbjct: 615 KQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDIITRGMQTAISTGNWNIKRF 674
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTP 455
+++G + RL+F+ I ++ + F G + + R L P WG LCP TP
Sbjct: 675 K--MEKSGVSQVLSRLSFIACIGMMTRLN--SQFEKGRKVSGPRALQPSQWGVLCPCDTP 730
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP--KLVKSGP 513
+GE CGL+ ++ V + ++ N+ + IL L GV SL ++ K G
Sbjct: 731 EGESCGLVKNLALMTHVTNDNENNENLIE-------ILYTL-GVEDSDSLTGEEIYKEG- 781
Query: 514 PAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGYVPLSLGGAY- 569
V V+L+G ++GV P ++++ +LRR K+ I D+ + +S G
Sbjct: 782 --VFFVILNGILLGVHKRPQKFMQRI-RYLRRYGKIGQFVSIYDNFLHNAIYISTDGGRL 838
Query: 570 --PGLYLFTSP----PKFVRPVRNISLPSEE---SQNIELIGPFEQVFMEIRCPDGGDGG 620
P + + P+ ++ + N ++ + S IE I EQ + I +
Sbjct: 839 CRPLIIIENGKSKLLPQHIKALENGTINFFDLLKSSVIEWIDVNEQNNLLIALNESDI-- 896
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF-RAD 679
+ TH EI P +L VVA L PY +HNQSPRN YQC M KQ +G ++ +F R D
Sbjct: 897 ---SLSTTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAMGKQAIG-AIGYNQFVRCD 952
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
LY L PQ P+V++ T ++ P G NAIVAV+++ GYD+EDA+++NKSS+DRG
Sbjct: 953 TLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGF 1012
Query: 740 CHGQIYQTETIDL 752
+ +++L
Sbjct: 1013 GRCMSLRKHSVEL 1025
Score = 135 (52.6 bits), Expect = 1.3e-84, Sum P(5) = 1.3e-84
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ ++Y+ + DVE Y+ S + + G+ PVML++ C L ++L+ L
Sbjct: 319 CRQRDLTYSAPIYVDVE--YVKGNSIITKNNVEIGRLPVMLRSDICVLNNKSEEELMKLG 376
Query: 98 EEAAEMGGYFILNGLERV 115
E + GGYFI+ G ERV
Sbjct: 377 ECPYDPGGYFIVKGTERV 394
Score = 55 (24.4 bits), Expect = 2.7e-76, Sum P(5) = 2.7e-76
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE 67
++ LV+ HIES++Y + + + + I VEF + G+P V E
Sbjct: 252 VKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEHFYVEFLDITVGTPSVEE 307
Score = 54 (24.1 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
Identities = 24/128 (18%), Positives = 56/128 (43%)
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN-- 318
G + +++ + E +D ++ ND+N + I ++K + + ++N ++ N
Sbjct: 81 GNEEDTHIKIEEEKNKDNLYECKNDDNKFYESKINFIKKQDEANNEDNNNNNNNNNNNCY 140
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK-VMEKNPSKQ 377
HL K ++ + K+++DE + K F+ N+ N+K+ + +N +
Sbjct: 141 YNNYENKHLNIFNNKNEVNNKNLSSNKILKDEYYD--KNFNEDNINNLKEFIHNENKKPK 198
Query: 378 IGTSIETM 385
G M
Sbjct: 199 TGKLYNNM 206
Score = 48 (22.0 bits), Expect = 1.3e-84, Sum P(5) = 1.3e-84
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C+ + MPY + L EL MN+
Sbjct: 1411 CTFCKKCDKNIVIQMPYACKLLFQELQTMNV 1441
Score = 43 (20.2 bits), Expect = 1.3e-84, Sum P(5) = 1.3e-84
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 176 WLQGKEYLLPVG--IVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIIL 233
+L+ ++ +G I+L+A+ +D EIF + K V L+S L
Sbjct: 441 YLKHNSFIEDIGVCIILRAMGYESDQEIFQMIG--------SHKNYVNGILLS------L 486
Query: 234 AEVQDLSLTTRLQCLQHIGEHFQP 257
E+ + ++ T L L +IG+ +P
Sbjct: 487 YELYNENIKTNLDALLYIGKKIRP 510
Score = 39 (18.8 bits), Expect = 2.2e-46, Sum P(4) = 2.2e-46
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 150 RCVRKDQSSVTLKLYYLLNGS 170
RC+ + SV LK Y+ NGS
Sbjct: 1014 RCMSLRKHSVELKKYF--NGS 1032
>POMBASE|SPAC4G9.08c [details] [associations]
symbol:rpc2 "DNA-directed RNA polymerase III complex
subunit Rpc2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PomBase:SPAC4G9.08c PANTHER:PTHR20856 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222962
KO:K03021 OMA:DMIMNPH EMBL:DQ156226 PIR:T38867 RefSeq:NP_593690.1
ProteinModelPortal:Q10233 DIP:DIP-29536N STRING:Q10233
EnsemblFungi:SPAC4G9.08c.1 GeneID:2543393 KEGG:spo:SPAC4G9.08c
OrthoDB:EOG4K6KC8 NextBio:20804408 Uniprot:Q10233
Length = 1165
Score = 740 (265.6 bits), Expect = 2.1e-84, Sum P(3) = 2.1e-84
Identities = 182/457 (39%), Positives = 245/457 (53%)
Query: 622 RNAFP-ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
R+ P TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D
Sbjct: 677 RDITPDTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDT 736
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
LY + PQ P+V+T T G D+ P G NA VA+++Y+GYD+EDA++LNKSS+DRG
Sbjct: 737 LLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFG 796
Query: 741 HGQIYQTETIDLSDDGNKV-DR-GQKLFRRNKDAKSL---HSVIDSDGLPYVGQMIHPGE 795
Q++ ++ + N DR G +R+ + + H V++ DGL VG + PG+
Sbjct: 797 RCQVFHKHSVIVRKYPNGTHDRIGDP--QRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQ 854
Query: 796 PYCSIYDKTT---NSWRTNSRKGSESVF----VDYVA-----VD--MKNSKNLPQKA-NI 840
Y + T NS + ES + + Y A +D M + + Q +
Sbjct: 855 IYVNKQTPTNALDNSITLGHTQTVESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKV 914
Query: 841 RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
R TR P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+NPH FPSRMT+
Sbjct: 915 LMRQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPFND-QGICPDIIMNPHGFPSRMTVGK 973
Query: 901 LLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVE 960
++E ++ K G L G T F G D S+ LV+ G+NY G +
Sbjct: 974 MIELLSGKVGVLRGTLEYGTCFG-------GTKVEDASRILVEH--------GYNYSGKD 1018
Query: 961 VLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXF 1020
+L SG+ G L IF+GP+YYQ+L+HMV DK R+ G +TRQP
Sbjct: 1019 MLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRL 1078
Query: 1021 GEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
GEMERD L+A+GA+ LL +RL SD DVC CG
Sbjct: 1079 GEMERDCLIAYGASQLLLERLMISSDACDVDVCGQCG 1115
Score = 443 (161.0 bits), Expect = 9.5e-50, Sum P(3) = 9.5e-50
Identities = 174/629 (27%), Positives = 281/629 (44%)
Query: 233 LAEVQDLSLTTRLQCLQHIGEHFQPVID-GLQSESYYAVAETVIRDYIFVHLNDNNDKFN 291
+ E L++ T Q L++IG + G + A V+ + H+N N +F
Sbjct: 295 IEECAKLNIYTAQQALEYIGARVKVNRRAGANRLPPHEEALEVLAAVVLAHINVFNLEFR 354
Query: 292 ---LLIFMLQK--LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKL 346
+ I ++ + L ++VD V D D + N+ + L G L+ + L E L KL
Sbjct: 355 PKAVYIGIMARRVLMAMVDPLQVDDR-DYVGNKRLELAGQLLAL-LFEDLFKKFNSDLKL 412
Query: 347 IQDEI---ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA 403
D++ + ++FD +N + S I + L TG + + +RA
Sbjct: 413 NIDKVLKKPHRTQEFDAYNQLTVH-------SDHITQGMVRALSTGNWSLKRFK--MERA 463
Query: 404 GYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGL 462
G T RL+++ + + + F R S R L +G LC TP+GE CGL
Sbjct: 464 GVTHVLSRLSYISALGMMTRIT--SQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGL 521
Query: 463 LNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLD 522
+ ++ + + + I+ + V+ G +L G V L+
Sbjct: 522 VKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVISG-------RELHSHG---TYLVYLN 571
Query: 523 GRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFV 582
G ++G+ S VA R+L+ S + P ++ + + +++ T +
Sbjct: 572 GAILGI--SRYPSLFVASFRKLRRSG-KISP------FIGIFINTHQRAVFISTDGGRIC 622
Query: 583 RP---VRNISLPSEESQNIELI--GP--FEQVFME--IRCPDGGDGG-------RRNAFP 626
RP V+N LP ES++I L+ G FE + + D + R+ P
Sbjct: 623 RPLIIVQN-GLPKVESKHIRLLKEGKWGFEDFLKQGLVEYVDVNEENDSLISVYERDITP 681
Query: 627 -ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 682 DTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLM 741
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
PQ P+V+T T G D+ P G NA VA+++Y+GYD+EDA++LNKSS+DRG Q++
Sbjct: 742 VYPQQPMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVF 801
Query: 746 QTETIDLSDDGNKV-DR-GQKLFRRNKDAKSL---HSVIDSDGLPYVGQMIHPGEPYCSI 800
++ + N DR G +R+ + + H V++ DGL VG + PG+ Y +
Sbjct: 802 HKHSVIVRKYPNGTHDRIGDP--QRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVN- 858
Query: 801 YDKTTNSWRTNSRKG-SESVFVDYVAVDM 828
TN+ + G +++V Y A M
Sbjct: 859 KQTPTNALDNSITLGHTQTVESGYKATPM 887
Score = 145 (56.1 bits), Expect = 2.1e-84, Sum P(3) = 2.1e-84
Identities = 47/167 (28%), Positives = 83/167 (49%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y + D+E+ G VVR R G+ PVML++ +C L G + ++ +L
Sbjct: 126 CRLRDLTYGANIYVDIEYT---RGKQVVRRRNVPIGRMPVMLRSNKCVLSGKNEMEMAAL 182
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
E + GGYFI+ G E+V +++ +Q ++ + + ++G +V RK
Sbjct: 183 NECPLDPGGYFIVKGTEKV---ILVQEQLSKNRIIVEA--EPKKGLWQASVTSSTHERKS 237
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
++ V K NG + L + +P+ +VLKA+ +D EIF
Sbjct: 238 KTYVITK-----NGKLYLKHNSVADD--IPIVVVLKAMGLQSDQEIF 277
Score = 70 (29.7 bits), Expect = 2.1e-84, Sum P(3) = 2.1e-84
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
C++CQ+++ + + +PY + L EL +MNI L L D
Sbjct: 1123 CNSCQSTREVVKMTIPYAAKLLFQELLSMNIVPRLALED 1161
Score = 59 (25.8 bits), Expect = 2.2e-75, Sum P(3) = 2.2e-75
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLD--AGSPV 64
F ++ LV+ H++S++Y +D L ++ QA T + +YLD G+PV
Sbjct: 57 FLKVKGLVKQHLDSYNYFVDVDLKKIV----QANEKVTSDVEPWFYLKYLDIRVGAPV 110
>DICTYBASE|DDB_G0288257 [details] [associations]
symbol:rpb2 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 dictyBase:DDB_G0288257 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR GO:GO:0006366
EMBL:AAFI02000109 GO:GO:0003899 GO:GO:0005665 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA RefSeq:XP_636812.1 STRING:Q54J75 PRIDE:Q54J75
EnsemblProtists:DDB0216277 GeneID:8626529 KEGG:ddi:DDB_G0288257
ProtClustDB:CLSZ2429137 Uniprot:Q54J75
Length = 1170
Score = 688 (247.2 bits), Expect = 3.4e-84, Sum P(5) = 3.4e-84
Identities = 168/450 (37%), Positives = 234/450 (52%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L + ++ P+ DHNQSPRN YQ M KQ MG + + R D + L
Sbjct: 690 THCEIHPSMILGICCSIIPFPDHNQSPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFY 749
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V T + E P G N VA+ Y+GY+ ED++ILN+S++DRG+ Y+
Sbjct: 750 PQKPLVTTRSMEYLHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRA 809
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDGL--PYV---GQMIHPGE--PY 797
+ + ++ + R+ A H ID DGL P V G I G+ P
Sbjct: 810 YKDEQKKQTSLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPL 869
Query: 798 CSIYDKTTNSWRTNSRKGSESVF--VDYVAVD---MKNSKNLPQKANIRFRHTRNPIIGD 852
D R ++++ S + + VD + S + +R R R P IGD
Sbjct: 870 PPSDDDLGPKTRRHTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGD 929
Query: 853 KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
KFSSRHGQKG C + D+PF+ V G+ PD+I+NPHA PSRMTI L+E + K +
Sbjct: 930 KFSSRHGQKGTCGMAYRQEDLPFT-VEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSAS 988
Query: 913 HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
G DATPF TD + V+ + + L G+ G EV+Y+G G +
Sbjct: 989 TGDEGDATPF------------TDVT---VEAISQALHKIGYQMTGHEVMYNGHTGRRMD 1033
Query: 973 CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHG 1032
+IFIGP YYQRL+HMV DK RS G + +TRQP FGEMERD +++HG
Sbjct: 1034 AQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHG 1093
Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCGSVLTA 1062
AA L +RL SD + +C +CG + A
Sbjct: 1094 AAQFLKERLFDQSDSYRVHICDICGLIAIA 1123
Score = 139 (54.0 bits), Expect = 3.4e-84, Sum P(5) = 3.4e-84
Identities = 46/152 (30%), Positives = 74/152 (48%)
Query: 65 VRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQ 124
V +R G+ P+ML+++ C L AD + L ++ E + + GGYFI+NG E+V + K
Sbjct: 147 VLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIINGSEKVL--IAQEKM 204
Query: 125 NYPMSMVRSSFRDRREGYTDKAVVIRCVR---KDQSSVTLKLYYLLN-GSVRLGFWLQGK 180
N V + Y A + C + S++ LK+ + N G V + +
Sbjct: 205 NNNHVYVFKKSPPSKYSYV--AEIRSCQETGSRPTSTMYLKMLHNTNKGPVGIKATVPYI 262
Query: 181 EYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
+ +PV IV +AL D +I H+ CYD K
Sbjct: 263 KQDVPVIIVFRALGFVADKDILEHI--CYDFK 292
Score = 108 (43.1 bits), Expect = 3.4e-84, Sum P(5) = 3.4e-84
Identities = 44/203 (21%), Positives = 87/203 (42%)
Query: 311 DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
D+ D N+ + L G L+ ++ + + + +Q I+ K +F + +K
Sbjct: 381 DDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCID---KDKEFIASSAVK--- 434
Query: 371 EKNPSKQIGTSIETMLKTGRL-ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS 429
SK I + ++ L TG ++++G ++G RL F +S R ++
Sbjct: 435 ----SKTITSGLKYSLATGNWGSSKSG---GTKSGVAQVLNRLTFASTLSHLRRLNTPIG 487
Query: 430 FAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMR 489
G + R+L WG +CP TP+G+ CGL+ ++ ++ S+ + +
Sbjct: 488 REG-KLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEEWT 546
Query: 490 TSILRVLIGVGMIPSLPKLVKSG 512
T L + + I S K+ +G
Sbjct: 547 TENLEEISDLSSIFSATKIFVNG 569
Score = 55 (24.4 bits), Expect = 3.4e-84, Sum P(5) = 3.4e-84
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C+ + + MPY + L EL +M+I
Sbjct: 1132 CRRCKNKTQISQIRMPYAAKLLFQELMSMSI 1162
Score = 51 (23.0 bits), Expect = 4.6e-75, Sum P(5) = 4.6e-75
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 223 PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVH 282
P++ +L E D LTT +C G +F +I+G SE E + ++++V
Sbjct: 157 PIMLRSQYCMLNEADDRDLTTMGECSFDQGGYF--IING--SEKVLIAQEKMNNNHVYVF 212
Query: 283 LNDNNDKFN 291
K++
Sbjct: 213 KKSPPSKYS 221
Score = 49 (22.3 bits), Expect = 5.2e-06, Sum P(4) = 5.2e-06
Identities = 17/74 (22%), Positives = 35/74 (47%)
Query: 716 VLAYTGYDMEDAMILN--KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK 773
+L + YD +DA +++ + S++ + Q++ + L G RG + R + K
Sbjct: 283 ILEHICYDFKDAQMMDLMRPSLEESF----VIQSQEVALDYLGK---RGSTMGTREQRIK 335
Query: 774 SLHSVIDSDGLPYV 787
V+ + LP+V
Sbjct: 336 FAREVLQKEMLPHV 349
Score = 48 (22.0 bits), Expect = 3.4e-84, Sum P(5) = 3.4e-84
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 6 SADFEPLRELVRHHIESFDYMLDEGLSEMFD 36
SA F+ + LVR ++SFD + + E+ D
Sbjct: 28 SAYFQE-KGLVRQQLDSFDEFIQNTMQEIID 57
>TAIR|locus:2153323 [details] [associations]
symbol:NRPC2 "nuclear RNA polymerase C2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002688 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03021 OMA:DMIMNPH IPI:IPI00530040 RefSeq:NP_199327.4
UniGene:At.9250 ProteinModelPortal:F4KD38 PRIDE:F4KD38
EnsemblPlants:AT5G45140.1 GeneID:834550 KEGG:ath:AT5G45140
Uniprot:F4KD38
Length = 1161
Score = 769 (275.8 bits), Expect = 3.5e-84, Sum P(2) = 3.5e-84
Identities = 199/526 (37%), Positives = 276/526 (52%)
Query: 618 DGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFR 677
+G TH EI P +L VVA L PY HNQSPRN YQC M KQ MG R
Sbjct: 667 EGAEAAKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNR 726
Query: 678 ADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDR 737
D LY L PQ P++ T T G D+ G NA VAV++++GYD+EDA+++NKSS+DR
Sbjct: 727 MDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDR 786
Query: 738 GMCHGQ-IYQTETIDLSD--DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG 794
G G+ I + + +S D DR R DA+ + ++D DGL G++I P
Sbjct: 787 GF--GRCIVMKKIVAMSQKYDNCTADRILIPQRTGPDAEKMQ-ILDDDGLATPGEIIRPN 843
Query: 795 EPYCSIY---DKTTN--SWRTNSR--------KG--SESVFVDYVAVDMKNSKNLPQKAN 839
+ Y + D T S ++S+ KG E+ VD VA+ L K
Sbjct: 844 DIYINKQVPVDTVTKFTSALSDSQYRPAREYFKGPEGETQVVDRVALCSDKKGQLCIKYI 903
Query: 840 IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
IR HTR P +GDKFSSRHGQKGVC + D PFS + G+ PDLI+NPH FPSRMT+
Sbjct: 904 IR--HTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSEL-GICPDLIMNPHGFPSRMTVG 960
Query: 900 MLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGV 959
++E + +K G G+F + F + + D S +LV++ GF+Y G
Sbjct: 961 KMIELLGSKAGVSCGRFHYGSAFGE--RSGHADKVETISATLVEK--------GFSYSGK 1010
Query: 960 EVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXX 1019
++LYSG+ G + IF+GP+YYQ+L+HMV DK R +G +TRQP
Sbjct: 1011 DLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLR 1070
Query: 1020 FGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLP 1079
GEMERD L+A+GA+ L+++RL SD VC CG L + + K+A+
Sbjct: 1071 VGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRACG--LLGYYNYKLKKAV------- 1121
Query: 1080 PARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
C C+ + T+ +PY + L EL +MN+ L+L
Sbjct: 1122 ---------CTTCKNGDNIATMKLPYACKLLFQELQSMNVVPRLKL 1158
Score = 448 (162.8 bits), Expect = 2.1e-47, Sum P(2) = 2.1e-47
Identities = 174/610 (28%), Positives = 264/610 (43%)
Query: 220 VG-SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDY 278
VG P S + + E + T+ Q L ++ + + G E A +++RD
Sbjct: 264 VGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGTPPEKD-GRALSILRDL 322
Query: 279 IFVHLN--DNN--DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
H+ DNN K + ML+++ + + D+ D + N+ + L G LI++ ++
Sbjct: 323 FLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFED 382
Query: 335 KLEDWLRKGKKLIQDEIENN---GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391
+ L + K + D I N +FDF N K+ I +E L TG
Sbjct: 383 LFKTMLSEAIKNV-DHILNKPIRASRFDFSQCLN------KDSRYSISLGLERTLSTGNF 435
Query: 392 ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLC 450
+ R G T RL+F+ + F + F R S R L P WG LC
Sbjct: 436 DIKRFR--MHRKGMTQVLTRLSFIGSMGFITKI--SPQFEKSRKVSGPRSLQPSQWGMLC 491
Query: 451 PVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK 510
P TP+GE CGL+ ++ V + + + K+ + L VL S +L
Sbjct: 492 PCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVL-------SAEEL-- 542
Query: 511 SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA-----ASVIPDDLE-VGYVPLS 564
P + L V+L+G ++G S + LRRL+ + SV ++ + YV
Sbjct: 543 HTPDSFL-VILNGLILG--KHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASD 599
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSE--------ESQNIELIGPFEQ--VFMEIRCP 614
+G L + V+ L IE + E+ + +
Sbjct: 600 VGRVCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIALYES 659
Query: 615 DG----GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
DG +G TH EI P +L VVA L PY HNQSPRN YQC M KQ MG
Sbjct: 660 DGTTELDEGAEAAKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 719
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
R D LY L PQ P++ T T G D+ G NA VAV++++GYD+EDA+++
Sbjct: 720 AYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAIVM 779
Query: 731 NKSSVDRGMCHGQ-IYQTETIDLSD--DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYV 787
NKSS+DRG G+ I + + +S D DR R DA+ + ++D DGL
Sbjct: 780 NKSSLDRGF--GRCIVMKKIVAMSQKYDNCTADRILIPQRTGPDAEKMQ-ILDDDGLATP 836
Query: 788 GQMIHPGEPY 797
G++I P + Y
Sbjct: 837 GEIIRPNDIY 846
Score = 139 (54.0 bits), Expect = 3.5e-84, Sum P(2) = 3.5e-84
Identities = 46/170 (27%), Positives = 85/170 (50%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFN--FGQFPVMLKTRRCHLQGADSQKLVS 95
CR A ++Y + ++E+ + G+ + N G+ P+ML++ RC L G D ++L
Sbjct: 107 CRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELAR 166
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRK 154
L E + GGYFI+ G E+V +++ +Q +S R ++G + +V + K
Sbjct: 167 LGECPLDPGGYFIIKGTEKV---LLIQEQ---LSKNRIIIDSDKKGNINASVTSSTEMTK 220
Query: 155 DQSSVTL---KLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
++ + + K+Y L+ V+ +P+ IVLKA+ +D EI
Sbjct: 221 SKTVIQMEKEKIYLFLHRFVKK----------IPIIIVLKAMGMESDQEI 260
Score = 62 (26.9 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
Identities = 14/58 (24%), Positives = 32/58 (55%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVV 65
+F +R LV+ H++SF+Y ++ G+ ++ ++I+ T + F+ + G P +
Sbjct: 38 EFLKVRGLVKQHLDSFNYFINVGIHKIVK--ANSRITSTVDPSIYLRFKKVRVGEPSI 93
Score = 47 (21.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK--VTCHACQTSKG 1097
R+H V S GS+ T I PQ R++ G P + P + + C C T +G
Sbjct: 441 RMHRKGMTQVLTRLSFIGSMGFITKISPQFEKSRKVSG-PRSLQPSQWGMLC-PCDTPEG 498
>GENEDB_PFALCIPARUM|PFB0715w [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase II
second largest subunit, putative" species:5833 "Plasmodium
falciparum" [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006366 EMBL:AE001362 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 HOGENOM:HOG000222962 RefSeq:XP_001349662.2
ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 454 (164.9 bits), Expect = 5.4e-84, Sum P(4) = 5.4e-84
Identities = 105/233 (45%), Positives = 134/233 (57%)
Query: 828 MKNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
M +S + K A ++ R R P IGDKF+SRHGQKG + DMPFS + G+ PD+I
Sbjct: 1073 MLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGITYRTEDMPFSSL-GIFPDII 1131
Query: 887 INPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELG 946
+NPHA PSRMTI L+E + K ++ G DATPF SK V E+
Sbjct: 1132 MNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPF---------------SKITVQEIS 1176
Query: 947 EMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITR 1006
+ L G+ +G E+LY+G G L +IFIGP YYQRL+HMV DK RS G + ITR
Sbjct: 1177 QKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTMITR 1236
Query: 1007 QPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSD-Y--HVADVCSLC 1056
QP FGEMERD +++HG+A +L +RL SD Y HV D C LC
Sbjct: 1237 QPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNCGLC 1289
Score = 317 (116.6 bits), Expect = 5.4e-84, Sum P(4) = 5.4e-84
Identities = 93/265 (35%), Positives = 137/265 (51%)
Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
G N F TH EIHP+ +L V A++ P+SDHNQSPRN YQ M KQ MG V R D
Sbjct: 708 GYYNNF--THCEIHPSLILGVCASIIPFSDHNQSPRNTYQSAMGKQAMGIYVTNFNIRLD 765
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
+ L PQ P+V T E P G NAIVA++ YTGY+ ED++I+N+SS+DRG+
Sbjct: 766 TLAHLLYYPQKPLVCTKVMEYLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGL 825
Query: 740 CHGQIYQTETIDLSDDGNKV-DRGQK-LFRRNKDAK-SLHSVIDSDGL--PYV---GQMI 791
Y+T T + G+ + + +K R K+ K ++ +D DGL P + G I
Sbjct: 826 FRSVFYRTYTSEEKQQGSLIIESFEKPSVRVVKNLKRGDYTKLDDDGLIAPGIRVLGDDI 885
Query: 792 HPGEPYCSIYDKTTNSW-RTNSRKGSESVF-VDYVAVDMKNSKN--LPQKANI-RFRHTR 846
G+ +I D+ + N+ S ++ D ++ + N+ N + +N+ + R
Sbjct: 886 IIGKVSPNIDDEDDIIIEKRNTSSSSIQIYNKDSISNNNSNNSNNNMNNMSNMSNMSNIR 945
Query: 847 NPIIGD-KFSSRHGQKGVCSQLWPD 870
+ I + FSS G V L PD
Sbjct: 946 SSISSNLSFSSNIGSSNVLDTL-PD 969
Score = 212 (79.7 bits), Expect = 5.4e-84, Sum P(4) = 5.4e-84
Identities = 105/462 (22%), Positives = 201/462 (43%)
Query: 39 RQAKISYTGKLMADVEFQ-YL-D--AGSPVVRERF-----NFGQFPVMLKTRRCHLQGAD 89
R ++Y+ + D+E Y+ D PV++E+F N G+ P+MLK+ C +G
Sbjct: 125 RLRNLTYSSAIYIDIEQSTYIIDEVTKKPVLKEKFIYERINLGRIPLMLKSMFCWTKGLP 184
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
++ + E + + GGYFI+NG E+V ++ ++ + + F+ ++ I
Sbjct: 185 ENEIADMGECSYDQGGYFIVNGGEKV----LVAQERMANNFIYV-FKKKQPSKFGWVAEI 239
Query: 150 RC-VRKDQ--SSVTLKLYYLLNGSVRLGFWLQGKEYL--LP-------VGIVLKALVDTN 197
R + + Q S ++K+ GS + G G + + LP VGI+ +AL T+
Sbjct: 240 RSQMERSQATSGFSVKMKTRSGGS-QYGSNKSGGQLVATLPYIRTEISVGILFRALGCTS 298
Query: 198 DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
D +I + +++K L+ ++ L E + T+ CL IG+ P
Sbjct: 299 DRDILQRIVYDFNDK-----------LMINALRETLEEC--IEYPTQDVCLDFIGKR-GP 344
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDN---NDKFNLLI-FMLQKLFSLVDHTSVS-DN 312
+ G E A+ ++R + H+ + K + I +M+ +L L + + D+
Sbjct: 345 TV-GASREKRILYAKELLRKEVLPHMGTHPGVESKKSYFIGYMINRLL-LAELGRIKEDD 402
Query: 313 PDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK 372
D + + + G L+ + ++++Q +I+NN K FD I+
Sbjct: 403 RDHFGKKRLDIAGPLMASSFSTYFRKMAKDVRRVLQRQIDNN-KPFDVAGA--IRSC--- 456
Query: 373 NPSKQIGTSIETMLKTGRLAT-QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
QI ++ L TG + G + R G RL + +S R ++
Sbjct: 457 ---SQITQGMQYQLATGNWGKDKDGKVI--RTGVAQVLNRLTYSSCLSHLRRLNTPLGRE 511
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVA 473
G + R+L WG +CP TP+G+ GL+ +++ C ++
Sbjct: 512 G-KMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDIS 552
Score = 52 (23.4 bits), Expect = 5.4e-84, Sum P(4) = 5.4e-84
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
C C + + + +PY + L EL M I L L D
Sbjct: 1301 CTVCNSKTNISQIYLPYACKLLFQELMTMAIYPKLVLED 1339
Score = 46 (21.3 bits), Expect = 1.1e-66, Sum P(4) = 1.1e-66
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 22 SFDYMLDEGLSEMFDHCRQAKISYTGKLMADVE 54
++DY++ EG+ E D C + + + + D++
Sbjct: 673 NWDYLIQEGIIEYID-CEEEETTMISMFIDDLK 704
>UNIPROTKB|O96236 [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006366 EMBL:AE001362
GO:GO:0003899 GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_001349662.2 ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 454 (164.9 bits), Expect = 5.4e-84, Sum P(4) = 5.4e-84
Identities = 105/233 (45%), Positives = 134/233 (57%)
Query: 828 MKNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
M +S + K A ++ R R P IGDKF+SRHGQKG + DMPFS + G+ PD+I
Sbjct: 1073 MLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGITYRTEDMPFSSL-GIFPDII 1131
Query: 887 INPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELG 946
+NPHA PSRMTI L+E + K ++ G DATPF SK V E+
Sbjct: 1132 MNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPF---------------SKITVQEIS 1176
Query: 947 EMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITR 1006
+ L G+ +G E+LY+G G L +IFIGP YYQRL+HMV DK RS G + ITR
Sbjct: 1177 QKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTMITR 1236
Query: 1007 QPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSD-Y--HVADVCSLC 1056
QP FGEMERD +++HG+A +L +RL SD Y HV D C LC
Sbjct: 1237 QPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNCGLC 1289
Score = 317 (116.6 bits), Expect = 5.4e-84, Sum P(4) = 5.4e-84
Identities = 93/265 (35%), Positives = 137/265 (51%)
Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
G N F TH EIHP+ +L V A++ P+SDHNQSPRN YQ M KQ MG V R D
Sbjct: 708 GYYNNF--THCEIHPSLILGVCASIIPFSDHNQSPRNTYQSAMGKQAMGIYVTNFNIRLD 765
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
+ L PQ P+V T E P G NAIVA++ YTGY+ ED++I+N+SS+DRG+
Sbjct: 766 TLAHLLYYPQKPLVCTKVMEYLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGL 825
Query: 740 CHGQIYQTETIDLSDDGNKV-DRGQK-LFRRNKDAK-SLHSVIDSDGL--PYV---GQMI 791
Y+T T + G+ + + +K R K+ K ++ +D DGL P + G I
Sbjct: 826 FRSVFYRTYTSEEKQQGSLIIESFEKPSVRVVKNLKRGDYTKLDDDGLIAPGIRVLGDDI 885
Query: 792 HPGEPYCSIYDKTTNSW-RTNSRKGSESVF-VDYVAVDMKNSKN--LPQKANI-RFRHTR 846
G+ +I D+ + N+ S ++ D ++ + N+ N + +N+ + R
Sbjct: 886 IIGKVSPNIDDEDDIIIEKRNTSSSSIQIYNKDSISNNNSNNSNNNMNNMSNMSNMSNIR 945
Query: 847 NPIIGD-KFSSRHGQKGVCSQLWPD 870
+ I + FSS G V L PD
Sbjct: 946 SSISSNLSFSSNIGSSNVLDTL-PD 969
Score = 212 (79.7 bits), Expect = 5.4e-84, Sum P(4) = 5.4e-84
Identities = 105/462 (22%), Positives = 201/462 (43%)
Query: 39 RQAKISYTGKLMADVEFQ-YL-D--AGSPVVRERF-----NFGQFPVMLKTRRCHLQGAD 89
R ++Y+ + D+E Y+ D PV++E+F N G+ P+MLK+ C +G
Sbjct: 125 RLRNLTYSSAIYIDIEQSTYIIDEVTKKPVLKEKFIYERINLGRIPLMLKSMFCWTKGLP 184
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
++ + E + + GGYFI+NG E+V ++ ++ + + F+ ++ I
Sbjct: 185 ENEIADMGECSYDQGGYFIVNGGEKV----LVAQERMANNFIYV-FKKKQPSKFGWVAEI 239
Query: 150 RC-VRKDQ--SSVTLKLYYLLNGSVRLGFWLQGKEYL--LP-------VGIVLKALVDTN 197
R + + Q S ++K+ GS + G G + + LP VGI+ +AL T+
Sbjct: 240 RSQMERSQATSGFSVKMKTRSGGS-QYGSNKSGGQLVATLPYIRTEISVGILFRALGCTS 298
Query: 198 DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
D +I + +++K L+ ++ L E + T+ CL IG+ P
Sbjct: 299 DRDILQRIVYDFNDK-----------LMINALRETLEEC--IEYPTQDVCLDFIGKR-GP 344
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDN---NDKFNLLI-FMLQKLFSLVDHTSVS-DN 312
+ G E A+ ++R + H+ + K + I +M+ +L L + + D+
Sbjct: 345 TV-GASREKRILYAKELLRKEVLPHMGTHPGVESKKSYFIGYMINRLL-LAELGRIKEDD 402
Query: 313 PDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK 372
D + + + G L+ + ++++Q +I+NN K FD I+
Sbjct: 403 RDHFGKKRLDIAGPLMASSFSTYFRKMAKDVRRVLQRQIDNN-KPFDVAGA--IRSC--- 456
Query: 373 NPSKQIGTSIETMLKTGRLAT-QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
QI ++ L TG + G + R G RL + +S R ++
Sbjct: 457 ---SQITQGMQYQLATGNWGKDKDGKVI--RTGVAQVLNRLTYSSCLSHLRRLNTPLGRE 511
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVA 473
G + R+L WG +CP TP+G+ GL+ +++ C ++
Sbjct: 512 G-KMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDIS 552
Score = 52 (23.4 bits), Expect = 5.4e-84, Sum P(4) = 5.4e-84
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
C C + + + +PY + L EL M I L L D
Sbjct: 1301 CTVCNSKTNISQIYLPYACKLLFQELMTMAIYPKLVLED 1339
Score = 46 (21.3 bits), Expect = 1.1e-66, Sum P(4) = 1.1e-66
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 22 SFDYMLDEGLSEMFDHCRQAKISYTGKLMADVE 54
++DY++ EG+ E D C + + + + D++
Sbjct: 673 NWDYLIQEGIIEYID-CEEEETTMISMFIDDLK 704
>ASPGD|ASPL0000039770 [details] [associations]
symbol:AN9120 species:162425 "Emericella nidulans"
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA HOGENOM:HOG000222962 EnsemblFungi:CADANIAT00009490
Uniprot:C8VK81
Length = 1252
Score = 694 (249.4 bits), Expect = 7.9e-83, Sum P(4) = 7.9e-83
Identities = 176/445 (39%), Positives = 232/445 (52%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R + L
Sbjct: 765 THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYY 824
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+ T + E P G NAIVA+ Y+GY+ ED++I+N+SS+DRG+ Y+T
Sbjct: 825 PQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRT 884
Query: 748 ETIDLSDDG-NKVDRGQKLFRRNKDA--KSLHSVIDSDGL--PYV---GQMIHPGEPYCS 799
+ G V+R +K R + K + +D DG+ P V G+ I G+
Sbjct: 885 YSDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVNPGVRVSGEDIIIGKTAPL 944
Query: 800 IYDKTTNSWRT-NSRKGSESV---FVDYVAVDMKNSKNLP---QKANIRFRHTRNPIIGD 852
D RT N K S + VD P + +R R T+ P IGD
Sbjct: 945 APDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPDSLRSVKVRMRMTKVPQIGD 1004
Query: 853 KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
KF+SRHGQKG + DMPF+ G+ PDLIINPHA PSRMTIA L+E +K +L
Sbjct: 1005 KFASRHGQKGTIGITYRQEDMPFTR-EGVTPDLIINPHAIPSRMTIAHLIECQLSKVSAL 1063
Query: 913 HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
G DATPF TD + VD + +LR G+ G EV+Y+G G +L
Sbjct: 1064 RGFEGDATPF------------TDVT---VDSISRLLREHGYQSRGFEVMYNGHTGRKLV 1108
Query: 973 CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHG 1032
++F+GP YYQRLRHMV DK R+ G +TRQP FGEMERD ++AHG
Sbjct: 1109 AQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHG 1168
Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCG 1057
A+ L +RL SD +C CG
Sbjct: 1169 ASAFLKERLFDVSDPFRVHICDDCG 1193
Score = 128 (50.1 bits), Expect = 7.9e-83, Sum P(4) = 7.9e-83
Identities = 47/154 (30%), Positives = 74/154 (48%)
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
E + G+ P+MLK++ C L+ Q L E + GGYFI+NG E+V ++ ++
Sbjct: 176 ETVHIGKMPIMLKSKYCLLRDLGEQALYDWNECPYDSGGYFIINGSEKV----LIAQERS 231
Query: 127 PMSMVRSSFRDRREGYTDKAVVIR-CVRKDQ---SSVTLKLYYLLNGSVRLGFWLQGKEY 182
+ V+ F+ T IR V K S ++LKL+ S + GF +
Sbjct: 232 AGNTVQV-FKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFGK-GDSAKGGFGPTIRST 289
Query: 183 L------LPVGIVLKALVDTNDLEIFNHLTCCYD 210
L +P+ IV +AL +D +I NH+ CYD
Sbjct: 290 LPYIKADIPIVIVFRALGVVSDEDILNHI--CYD 321
Score = 106 (42.4 bits), Expect = 7.9e-83, Sum P(4) = 7.9e-83
Identities = 56/218 (25%), Positives = 87/218 (39%)
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG Q +AG + R + +S R + G + R+L
Sbjct: 479 LATGNWGEQKKA-ASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDG-KIAKPRQLHNTH 536
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WG +CP TP+G+ CGL+ ++ C + S I DF R + VL
Sbjct: 537 WGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPII-DFMIQRN--MEVLEEFE----- 588
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVS-AASVIPDDLEVGY-V 561
P++ P V ++G VGV PS +E + A RR +S S+I D E + +
Sbjct: 589 PQVT----PNATKVFVNGVWVGVHRQPSHLVETMQALRRRNMISHEVSLIRDIREREFKI 644
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIE 599
G L++ + PK N+ L E + +E
Sbjct: 645 FTDAGRVCRPLFVVDNDPKSEN-CGNLVLNKEHIRKLE 681
Score = 65 (27.9 bits), Expect = 7.9e-83, Sum P(4) = 7.9e-83
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 1079 PPARAPKKV-TCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
P A+ K + C C + V +PY + L ELAAMNI
Sbjct: 1197 PIAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAMNI 1238
Score = 56 (24.8 bits), Expect = 2.6e-75, Sum P(4) = 2.6e-75
Identities = 23/94 (24%), Positives = 40/94 (42%)
Query: 7 ADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR 66
+ F + LV ++SFD + L E+ + Q + T + E D PVV
Sbjct: 30 SSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTLDQT---IPPSE----DEVDPVVV 82
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEA 100
R+ +F ++ +R ++G D + L EA
Sbjct: 83 RRYEL-KFGTVMLSRPMAMEG-DGAATIMLPHEA 114
Score = 39 (18.8 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 303 LVDHTSVSDNPDSLQNQEI 321
+VD V+ PDSL++ ++
Sbjct: 974 IVDQVLVTTTPDSLRSVKV 992
Score = 37 (18.1 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTK 700
Q + A G S ++ L HL+ TPI R K
Sbjct: 487 QKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAK 528
>CGD|CAL0004145 [details] [associations]
symbol:orf19.3349 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 687 (246.9 bits), Expect = 2.0e-81, Sum P(4) = 2.0e-81
Identities = 184/495 (37%), Positives = 251/495 (50%)
Query: 579 PKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGML 638
P V+ +N S+ E Q I+L I+ G N TH EIHP+ +L
Sbjct: 703 PDDVKASKN-SVSESEQQKIQLEEQELDPGKRIKPTTSG-----NTHTYTHCEIHPSMIL 756
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D L PQ P+ T +
Sbjct: 757 GVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLGTTRSM 816
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD-DGN 757
E P G NAIVA+ Y+GY+ ED+MI+N+SS+DRG+ +++ +D+ G
Sbjct: 817 EYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY-MDIEKRQGM 875
Query: 758 KVDRGQKLFRRNKDAKSLHSV---IDSDGL--PYV---GQMIHPGEPYCSIYDKTTNSWR 809
K + R+ + H +D DGL P V G+ I G+ D R
Sbjct: 876 KALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQR 935
Query: 810 TN---SRKGSESV-FVDYVAVD---MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
T R S + + VD + + + + +R R T+ P IGDKF+SRHGQKG
Sbjct: 936 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKG 995
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
+ DMPF+ G+ PDLIINPHA PSRMT+A L+E + +K SL G DA+PF
Sbjct: 996 TIGVTYRHEDMPFTA-EGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGFEGDASPF 1054
Query: 923 ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
TD + +++ +LR G+ G EV+Y+G G +L ++F GP YY
Sbjct: 1055 ------------TDVT---TEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYY 1099
Query: 983 QRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLH 1042
QRLRHMV DK R+ G + +TRQP FGEMERD ++AHGAA L +RL
Sbjct: 1100 QRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLM 1159
Query: 1043 TCSDYHVADVCSLCG 1057
SD VC +CG
Sbjct: 1160 EASDAFRVHVCGMCG 1174
Score = 120 (47.3 bits), Expect = 2.0e-81, Sum P(4) = 2.0e-81
Identities = 40/146 (27%), Positives = 72/146 (49%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G+ P+ML+++ C L+ + LKE +MGGYF++NG E+V ++ ++ ++V
Sbjct: 162 GKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVINGSEKV----LIAQERSAANIV 217
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQ---SSVTLKLYYLLNGSVRLGFWLQGK-EYL---L 184
+ + + A + + K SS+ +KLY V G ++ Y+ +
Sbjct: 218 QVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEKGVS-GRTIKATLPYIKEDI 276
Query: 185 PVGIVLKALVDTNDLEIFNHLTCCYD 210
P+ IV +AL D +I H+ CYD
Sbjct: 277 PIVIVFRALGVVPDGDILEHI--CYD 300
Score = 113 (44.8 bits), Expect = 2.0e-81, Sum P(4) = 2.0e-81
Identities = 46/215 (21%), Positives = 86/215 (40%)
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G++ E A+ +++ + ++ K L +M+ +L D+ D
Sbjct: 337 GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHF 396
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
+ + L G L+ + + + +Q +EN G DF N+ ++ S+
Sbjct: 397 GKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENGG---DF----NVTLAVK---SQ 446
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q + RAG + R + +S R + G +
Sbjct: 447 TITDGLRYSLATGNWGEQRKA-MSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDG-KIA 504
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMT-STC 470
R+L WG +CP TP+G+ CGL+ +++ TC
Sbjct: 505 KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTC 539
Score = 60 (26.2 bits), Expect = 2.0e-81, Sum P(4) = 2.0e-81
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C +C+ + + +PY + L EL AMNI
Sbjct: 1189 CRSCKNKTNIYQIHIPYAAKLLFQELMAMNI 1219
Score = 38 (18.4 bits), Expect = 1.3e-73, Sum P(4) = 1.3e-73
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 309 VSDNPDSLQNQEI-LLPGHLITIYLKEKLED 338
V DNPDS E+ + H+ + ++L++
Sbjct: 635 VDDNPDSETKGELKITKEHVKQLLRSDELDE 665
>UNIPROTKB|Q5A8Y5 [details] [associations]
symbol:RPB140 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0042493 "response to drug"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 687 (246.9 bits), Expect = 2.0e-81, Sum P(4) = 2.0e-81
Identities = 184/495 (37%), Positives = 251/495 (50%)
Query: 579 PKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGML 638
P V+ +N S+ E Q I+L I+ G N TH EIHP+ +L
Sbjct: 703 PDDVKASKN-SVSESEQQKIQLEEQELDPGKRIKPTTSG-----NTHTYTHCEIHPSMIL 756
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D L PQ P+ T +
Sbjct: 757 GVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLGTTRSM 816
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD-DGN 757
E P G NAIVA+ Y+GY+ ED+MI+N+SS+DRG+ +++ +D+ G
Sbjct: 817 EYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY-MDIEKRQGM 875
Query: 758 KVDRGQKLFRRNKDAKSLHSV---IDSDGL--PYV---GQMIHPGEPYCSIYDKTTNSWR 809
K + R+ + H +D DGL P V G+ I G+ D R
Sbjct: 876 KALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQR 935
Query: 810 TN---SRKGSESV-FVDYVAVD---MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
T R S + + VD + + + + +R R T+ P IGDKF+SRHGQKG
Sbjct: 936 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKG 995
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
+ DMPF+ G+ PDLIINPHA PSRMT+A L+E + +K SL G DA+PF
Sbjct: 996 TIGVTYRHEDMPFTA-EGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGFEGDASPF 1054
Query: 923 ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
TD + +++ +LR G+ G EV+Y+G G +L ++F GP YY
Sbjct: 1055 ------------TDVT---TEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYY 1099
Query: 983 QRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLH 1042
QRLRHMV DK R+ G + +TRQP FGEMERD ++AHGAA L +RL
Sbjct: 1100 QRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLM 1159
Query: 1043 TCSDYHVADVCSLCG 1057
SD VC +CG
Sbjct: 1160 EASDAFRVHVCGMCG 1174
Score = 120 (47.3 bits), Expect = 2.0e-81, Sum P(4) = 2.0e-81
Identities = 40/146 (27%), Positives = 72/146 (49%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G+ P+ML+++ C L+ + LKE +MGGYF++NG E+V ++ ++ ++V
Sbjct: 162 GKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVINGSEKV----LIAQERSAANIV 217
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQ---SSVTLKLYYLLNGSVRLGFWLQGK-EYL---L 184
+ + + A + + K SS+ +KLY V G ++ Y+ +
Sbjct: 218 QVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEKGVS-GRTIKATLPYIKEDI 276
Query: 185 PVGIVLKALVDTNDLEIFNHLTCCYD 210
P+ IV +AL D +I H+ CYD
Sbjct: 277 PIVIVFRALGVVPDGDILEHI--CYD 300
Score = 113 (44.8 bits), Expect = 2.0e-81, Sum P(4) = 2.0e-81
Identities = 46/215 (21%), Positives = 86/215 (40%)
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G++ E A+ +++ + ++ K L +M+ +L D+ D
Sbjct: 337 GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHF 396
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
+ + L G L+ + + + +Q +EN G DF N+ ++ S+
Sbjct: 397 GKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENGG---DF----NVTLAVK---SQ 446
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q + RAG + R + +S R + G +
Sbjct: 447 TITDGLRYSLATGNWGEQRKA-MSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDG-KIA 504
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMT-STC 470
R+L WG +CP TP+G+ CGL+ +++ TC
Sbjct: 505 KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTC 539
Score = 60 (26.2 bits), Expect = 2.0e-81, Sum P(4) = 2.0e-81
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C +C+ + + +PY + L EL AMNI
Sbjct: 1189 CRSCKNKTNIYQIHIPYAAKLLFQELMAMNI 1219
Score = 38 (18.4 bits), Expect = 1.3e-73, Sum P(4) = 1.3e-73
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 309 VSDNPDSLQNQEI-LLPGHLITIYLKEKLED 338
V DNPDS E+ + H+ + ++L++
Sbjct: 635 VDDNPDSETKGELKITKEHVKQLLRSDELDE 665
>TAIR|locus:2119013 [details] [associations]
symbol:NRPB2 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0000394 "RNA splicing,
via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0009506
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006351 EMBL:AL161555 EMBL:AL035527 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 EMBL:Z19120 EMBL:Z19121 IPI:IPI00524372
PIR:T05846 RefSeq:NP_193902.1 UniGene:At.112
ProteinModelPortal:P38420 STRING:P38420 PaxDb:P38420 PRIDE:P38420
EnsemblPlants:AT4G21710.1 GeneID:828259 KEGG:ath:AT4G21710
TAIR:At4g21710 HOGENOM:HOG000218612 InParanoid:P38420 KO:K03010
OMA:IMIVFRA PhylomeDB:P38420 ProtClustDB:CLSN2685591
Genevestigator:P38420 GermOnline:AT4G21710 Uniprot:P38420
Length = 1188
Score = 739 (265.2 bits), Expect = 9.2e-81, Sum P(4) = 9.2e-81
Identities = 183/457 (40%), Positives = 242/457 (52%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG V +FR D Y L
Sbjct: 702 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 761
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QI 744
PQ P+V T + P G NAIVA+ Y+GY+ ED++I+N+SS+DRG +
Sbjct: 762 PQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 821
Query: 745 YQTETIDLS----DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
Y+ E + +D + DRG + R+ + +D DGL G + GE I
Sbjct: 822 YRDEEKKMGTLVKEDFGRPDRGSTMGMRHGS----YDKLDDDGLAPPGTRVS-GEDV--I 874
Query: 801 YDKTT---------NSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHT 845
KTT S R R + SE+ VD V + N+ L + +R R
Sbjct: 875 IGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTT-NADGL-RFVKVRVRSV 932
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P IGDKFSSRHGQKG + DMP++ + G+ PD+I+NPHA PSRMTI L+E +
Sbjct: 933 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT-IEGVTPDIIVNPHAIPSRMTIGQLIECI 991
Query: 906 AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
K + GK DATPF TD + VD + + L CG+ G E +Y+G
Sbjct: 992 MGKVAAHMGKEGDATPF------------TDVT---VDNISKALHKCGYQMRGFERMYNG 1036
Query: 966 VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMER 1025
G LT IF+GP YYQRL+HMV DK R G + +TRQP FGEMER
Sbjct: 1037 HTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 1096
Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA 1062
D ++AHGAA+ L +RL SD + VC +CG + A
Sbjct: 1097 DCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIA 1133
Score = 118 (46.6 bits), Expect = 9.2e-81, Sum P(4) = 9.2e-81
Identities = 48/230 (20%), Positives = 94/230 (40%)
Query: 241 LTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFM 296
+ +L L +IG+ V G+ E A +++ + H+ + K ++
Sbjct: 316 IQNQLVALDYIGKRGATV--GVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYI 373
Query: 297 LQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK 356
+ +L D+ D N+ + L G L+ + R + +Q ++N GK
Sbjct: 374 IHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDN-GK 432
Query: 357 KFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLR 416
+ N++ ++ +K I + ++ L TG RAG + RL +
Sbjct: 433 E------VNLQFAIK---AKTITSGLKYSLATGNWGQANAAGT--RAGVSQVLNRLTYAS 481
Query: 417 FISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHM 466
+S R ++ G + R+L WG +CP TP+G+ CGL+ ++
Sbjct: 482 TLSHLRRLNSPIGREG-KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 530
Score = 111 (44.1 bits), Expect = 4.9e-80, Sum P(4) = 4.9e-80
Identities = 73/339 (21%), Positives = 137/339 (40%)
Query: 39 RQAKISYTGKLMADVEFQYLDAG--SPVVRERFNF-----GQFPVMLKTRRCHLQGADSQ 91
R ++Y+ L DV + + G V E +F G+ P+ML++ C L +
Sbjct: 116 RLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEK 175
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
L L E + GGYFI+NG E+V + K + V + + Y + +R
Sbjct: 176 DLTELGECPYDQGGYFIINGSEKVL--IAQEKMSTNHVYVFKKRQPNKYAYVGE---VRS 230
Query: 152 VRKDQSSV--TLKLYYLLNGSVR---LGFWLQGK-EYL---LPVGIVLKALVDTNDLEIF 202
+ ++Q+ T+ + L S + G +++ Y+ +P+ IV +AL D +I
Sbjct: 231 MAENQNRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDIL 290
Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
H+ CYD + E ++ L E + +L L +IG+ V G+
Sbjct: 291 EHI--CYD---------FADTQMMELLRPSLEEA--FVIQNQLVALDYIGKRGATV--GV 335
Query: 263 QSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
E A +++ + H+ + K +++ +L D+ D N
Sbjct: 336 TKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGN 395
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK 357
+ + L G L+ + R + +Q ++N GK+
Sbjct: 396 KRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDN-GKE 433
Score = 52 (23.4 bits), Expect = 9.2e-81, Sum P(4) = 9.2e-81
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 6 SADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKI 43
SA FE + LVR ++SFD + + E+ D +I
Sbjct: 31 SAYFEE-KGLVRQQLDSFDEFIQNTMQEIVDESADIEI 67
Score = 49 (22.3 bits), Expect = 9.2e-81, Sum P(4) = 9.2e-81
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 1074 EIGGLPPARAPKKVT--CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
E+ GL KK + C C+ + V +PY + L EL +M I
Sbjct: 1125 EVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAI 1172
>DICTYBASE|DDB_G0288449 [details] [associations]
symbol:rpc2 "RNA polymerase III, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0016539 "intein-mediated
protein splicing" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR006141 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PROSITE:PS50817
PROSITE:PS50818 dictyBase:DDB_G0288449 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR
EMBL:AAFI02000111 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
InterPro:IPR003587 SMART:SM00306 GO:GO:0016539 TIGRFAMs:TIGR01443
TIGRFAMs:TIGR01445 HSSP:P08518 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 RefSeq:XP_636731.1
STRING:Q54IZ9 EnsemblProtists:DDB0216313 GeneID:8626608
KEGG:ddi:DDB_G0288449 KO:K03021 OMA:IRRIIMA Uniprot:Q54IZ9
Length = 1608
Score = 714 (256.4 bits), Expect = 6.9e-80, Sum P(4) = 6.9e-80
Identities = 173/447 (38%), Positives = 237/447 (53%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P ML VA L PY HNQSPRN YQC M KQ +G R D LY L
Sbjct: 1135 THLEIEPFTMLGCVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLVH 1194
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
Q P+ +T T + P G NA VAV++Y+GYD+EDA+++NK+S+DRG + +
Sbjct: 1195 TQRPLCQTRTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLKK 1254
Query: 748 ETIDLSDDGNKVDRGQKLF--RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY---- 801
+ + GN D ++F N + + ++DSDG+ G++ G+ + Y
Sbjct: 1255 QVTSIKKHGN--DTSDRIFPPTPNDLRQPKYGLLDSDGIAKPGELAQKGQILVNKYSPLN 1312
Query: 802 --DKTTN-------SWRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
D T N +++++ K F+D V + + + L K + R TR P +
Sbjct: 1313 TIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIK--MLMRSTRRPEL 1370
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
GDKFSSRHGQKGVC + DMPFS + G+ PD+I+NPH FPSRMTI ++E +A K G
Sbjct: 1371 GDKFSSRHGQKGVCGIIVKQEDMPFSDL-GICPDIIMNPHGFPSRMTIGKMIELLAGKAG 1429
Query: 911 SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
L GKF T F GD + SK L+ + GF+Y G + + SGV G
Sbjct: 1430 VLSGKFGFGTCFG-------GDRVENISKVLISK--------GFSYGGKDYVTSGVTGEP 1474
Query: 971 LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLA 1030
L C IF GP++YQ+L+HMV DK R+ G +TRQP GEMERD L+
Sbjct: 1475 LACFIFFGPIFYQKLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIG 1534
Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCG 1057
+GA+ L+ +RL SD C CG
Sbjct: 1535 YGASALIMERLMISSDRFTVYACKNCG 1561
Score = 141 (54.7 bits), Expect = 1.2e-79, Sum P(3) = 1.2e-79
Identities = 77/334 (23%), Positives = 138/334 (41%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ + ++E+ ++ +R + G P+ML++ C L +++ +L
Sbjct: 115 CRLRDMTYSAPIFVNIEYT---RNKQIISKRDVHIGNIPIMLRSSNCVLSKKTPEQMAAL 171
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
E + GGYFI+ G E+V IL + +S R +G +V RK
Sbjct: 172 GECPMDPGGYFIVRGQEKV----ILNHEQ--LSKNRIIIEMDSKGLPSASVTSSTHERKS 225
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
++ VTLK N + L G++ +PV IVLK + D E+
Sbjct: 226 RTGVTLK-----NEKLYLKHNTFGED--IPVAIVLKGMGVETDQEMAQ------------ 266
Query: 216 EKGAVGSPLVS-ERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID--GLQSESYYAV-A 271
VGS V + L E Q + T Q L ++G + G+Q++ + A
Sbjct: 267 ---LVGSDDVFLNAITPSLEECQKCGVHTAAQALDYLGSRIKVFRRPYGVQNKKTKSEEA 323
Query: 272 ETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
++ + H+ F L L M++++ S D+ D N+ I L G L
Sbjct: 324 RDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKRIELSGQL 383
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIE--NNGKKFD 359
I++ ++ + + + KK + I N + D
Sbjct: 384 ISLLFEDCFKKFQSELKKSVDQAIAKANRAENLD 417
Score = 125 (49.1 bits), Expect = 6.9e-80, Sum P(4) = 6.9e-80
Identities = 54/238 (22%), Positives = 96/238 (40%)
Query: 233 LAEVQDLSLTTRLQCLQHIGEHFQPVID--GLQSESYYAV-AETVIRDYIFVHLNDNNDK 289
L E Q + T Q L ++G + G+Q++ + A ++ + H+
Sbjct: 282 LEECQKCGVHTAAQALDYLGSRIKVFRRPYGVQNKKTKSEEARDILAGVVLNHVPVRRYN 341
Query: 290 FNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKK 345
F L L M++++ S D+ D N+ I L G LI++ ++ + + + KK
Sbjct: 342 FRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKRIELSGQLISLLFEDCFKKFQSELKK 401
Query: 346 LIQDEIE--NNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA 403
+ I N + D L + N +S + LK R+ +R+
Sbjct: 402 SVDQAIAKANRAENLDLPKLIRTDTIT--NGFTHAISSGQWNLKRFRM---------ERS 450
Query: 404 GYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPC 460
G + RL+++ + + + F R + R L P WG LCP TP+GE C
Sbjct: 451 GVSQVLSRLSYISCMGMMTRIQ--SQFEKTRKVAGPRSLQPSQWGMLCPSDTPEGEAC 506
Score = 75 (31.5 bits), Expect = 6.9e-80, Sum P(4) = 6.9e-80
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
C C++S + T+ +PY + L EL AMNI L+L D
Sbjct: 1569 CQYCKSSVDISTIQIPYACKLLFQELQAMNIVPRLKLVD 1607
Score = 60 (26.2 bits), Expect = 6.9e-80, Sum P(4) = 6.9e-80
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRER 68
F R LV+ HI+SF++ ++ + ++ +++ V F ++ GSP E
Sbjct: 46 FMKCRGLVKQHIDSFNFFINVEMKKIVK--ANERLTAENDPSYFVRFTDINVGSPTSTED 103
Query: 69 FNFGQFPVMLKTRRCHLQ 86
N V L +RC L+
Sbjct: 104 -NLDS--VQLTPQRCRLR 118
Score = 41 (19.5 bits), Expect = 4.0e-71, Sum P(4) = 4.0e-71
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 305 DHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
DH ++ N + Q++++LL L I +LE
Sbjct: 578 DHRFLTSNGNWKQSKDLLLNDKLFLISSSNQLE 610
Score = 41 (19.5 bits), Expect = 3.7e-69, Sum P(3) = 3.7e-69
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 304 VDHTSVS--DNPDSLQ--NQEILLPGHLITIYLKEKLEDW-----LRKGKKLIQDEIENN 354
+D SV +NPD L + + L +T +K E W K + L++ I++
Sbjct: 1 MDPESVGYCNNPDFLHKGSMDELYNISKLTDDIKPVEEKWKLVPAFMKCRGLVKQHIDS- 59
Query: 355 GKKFDFFNLANIKKVMEKN 373
F+FF +KK+++ N
Sbjct: 60 ---FNFFINVEMKKIVKAN 75
Score = 38 (18.4 bits), Expect = 8.3e-71, Sum P(4) = 8.3e-71
Identities = 13/73 (17%), Positives = 35/73 (47%)
Query: 245 LQCLQHIGEHFQPVIDGLQ-SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSL 303
++ LQ + F VI + ES + + ++ +I + N K N I +++ +
Sbjct: 839 IKSLQILLNQFN-VISSIDFEESNLIIINSSLKKFIDLINIKFNQKLNNQIIQIREYLNY 897
Query: 304 VDHTSVSDNPDSL 316
+++ + ++N + +
Sbjct: 898 INYNNNNNNNEEI 910
>UNIPROTKB|F1P4F2 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:AADN02009110
EMBL:AADN02009111 IPI:IPI00580164 Ensembl:ENSGALT00000018572
ArrayExpress:F1P4F2 Uniprot:F1P4F2
Length = 1176
Score = 713 (256.0 bits), Expect = 1.7e-79, Sum P(3) = 1.7e-79
Identities = 188/499 (37%), Positives = 256/499 (51%)
Query: 605 EQVFMEIRCPDG-GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
E+ M PD + G TH EIHP+ +L V A++ P+ DHNQSPRN YQ M
Sbjct: 672 EETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMG 731
Query: 664 KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
KQ MG + R D + L PQ P+V T + E P G N+IVA+ +YTGY+
Sbjct: 732 KQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYN 791
Query: 724 MEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDAK--SLHSVID 780
ED++I+N+S+VDRG Y++ S G ++ + +K R +++ +D
Sbjct: 792 QEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDKLD 851
Query: 781 SDGL--PYV---GQMIHPGEPYCSIYDKTTNSWRTNSR--KGSESVFV---DYVAVD--M 828
DGL P V G + G+ ++ + TN R K S F+ + VD M
Sbjct: 852 DDGLIAPGVRVSGDDVIIGKTV-TLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQVM 910
Query: 829 KNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
K IR R R P IGDKF+SRHGQKG C + DMPF+ G+ PD+II
Sbjct: 911 VTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-CEGITPDIII 969
Query: 888 NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE 947
NPHA PSRMTI L+E + K + G+ DATPF ++V V ++
Sbjct: 970 NPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN--------------VQKISN 1015
Query: 948 MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
+L G++ G EVLY+G G ++T +IFIGP YYQRL+HMV DK R+ G + + RQ
Sbjct: 1016 LLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQ 1075
Query: 1008 PXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA-TFIH 1066
P FGEMERD +AHGAA L +RL SD + VC+LCG + A T H
Sbjct: 1076 PMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTH 1135
Query: 1067 PQK-RAIREIGGLPPARAP 1084
+ R R + R P
Sbjct: 1136 TYECRGCRNKTQISLVRMP 1154
Score = 363 (132.8 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
Identities = 147/550 (26%), Positives = 233/550 (42%)
Query: 261 GLQSESYYAVAETVIRDYIFVHLN-----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ + + L +M+ +L D+ D
Sbjct: 330 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYYMVHRLLLAALGRRELDDRDH 389
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G L+ + ++ L++ + Q I+ GK F+ LA IK +
Sbjct: 390 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFNL-ELA-IK-------T 439
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 440 RIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KL 497
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G GL+ ++ Y S G+ + IL
Sbjct: 498 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA-----YISVGS------QPSPILEF 546
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRR---LKVSAASV 551
L M +L ++ + + ++G VG+ E + + LRR + VS S+
Sbjct: 547 LEEWSM-ENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSM 605
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IE 599
I D E + G L K + R+I E N +E
Sbjct: 606 IRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVE 665
Query: 600 LIGPFEQ-VFMEIRCPDG-GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
I E+ M PD + G TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 666 YIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNT 725
Query: 658 YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 726 YQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIA 785
Query: 718 AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDAK--S 774
+YTGY+ ED++I+N+S+VDRG Y++ S G ++ + +K R +
Sbjct: 786 SYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHA 845
Query: 775 LHSVIDSDGL 784
++ +D DGL
Sbjct: 846 IYDKLDDDGL 855
Score = 145 (56.1 bits), Expect = 1.7e-79, Sum P(3) = 1.7e-79
Identities = 93/411 (22%), Positives = 168/411 (40%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 170 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 224
Query: 151 CVRKD-QSSVTLKLYYLLNGSVRLGFWLQGKE------YL---LPVGIVLKALVDTNDLE 200
C+ + + T+ + L G G+ Y+ +P+ IV +AL +D +
Sbjct: 225 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
I H+ YD + P + E VK L E + + L IG +P
Sbjct: 285 ILEHII--YDFE---------DPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAKP-- 329
Query: 260 DGLQSESYYAVAETVIRDYIFVHLN-----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
G+ E A+ V++ + H+ + + L +M+ +L D+ D
Sbjct: 330 -GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYYMVHRLLLAALGRRELDDRD 388
Query: 315 SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
N+ + L G L+ + ++ L++ + Q I+ GK F+ LA IK
Sbjct: 389 HYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFNL-ELA-IK------- 438
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVH 425
++ I ++ L TG Q Q RAG + RL F +S R ++
Sbjct: 439 TRIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLN 488
Score = 57 (25.1 bits), Expect = 1.7e-79, Sum P(3) = 1.7e-79
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C+ + V MPY + L EL +M+I
Sbjct: 1139 CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1169
Score = 37 (18.1 bits), Expect = 3.5e-68, Sum P(3) = 3.5e-68
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 472 VASYYDSRGNIR 483
++SY+D +G +R
Sbjct: 31 ISSYFDEKGLVR 42
>UNIPROTKB|C9J4M6 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HGNC:HGNC:9188 IPI:IPI00873948 STRING:C9J4M6
Ensembl:ENST00000431623 UCSC:uc011caf.1 ArrayExpress:C9J4M6
Bgee:C9J4M6 Uniprot:C9J4M6
Length = 1099
Score = 712 (255.7 bits), Expect = 2.7e-78, Sum P(3) = 2.7e-78
Identities = 183/475 (38%), Positives = 249/475 (52%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D + L
Sbjct: 619 THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYY 678
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V T + E P G N+IVA+ +YTGY+ ED++I+N+S+VDRG Y++
Sbjct: 679 PQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS 738
Query: 748 ETIDLSDDG-NKVDRGQKLFRRNKDAK--SLHSVIDSDGL--PYV---GQMIHPGEPYCS 799
S G ++ + +K R +++ +D DGL P V G + G+ +
Sbjct: 739 YKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-T 797
Query: 800 IYDKTTNSWRTNSR--KGSESVFV---DYVAVD--MKNSKNLPQK-ANIRFRHTRNPIIG 851
+ + TN R K S F+ + VD M K IR R R P IG
Sbjct: 798 LPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIG 857
Query: 852 DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
DKF+SRHGQKG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K +
Sbjct: 858 DKFASRHGQKGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSA 916
Query: 912 LHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTEL 971
G+ DATPF ++V V ++ +L G++ G EVLY+G G ++
Sbjct: 917 NKGEIGDATPFNDAVN--------------VQKISNLLSDYGYHLRGNEVLYNGFTGRKI 962
Query: 972 TCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAH 1031
T +IFIGP YYQRL+HMV DK R+ G + + RQP FGEMERD +AH
Sbjct: 963 TSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAH 1022
Query: 1032 GAAYLLHDRLHTCSDYHVADVCSLCGSVLTA-TFIHPQK-RAIREIGGLPPARAP 1084
GAA L +RL SD + VC+LCG + A T H + R R + R P
Sbjct: 1023 GAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1077
Score = 360 (131.8 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
Identities = 149/550 (27%), Positives = 236/550 (42%)
Query: 261 GLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 254 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 313
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I+ GK F+ LA IK ++
Sbjct: 314 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFNL-ELA-IK-------TR 363
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 364 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 421
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ Y S G+ + IL L
Sbjct: 422 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA-----YISVGS------QPSPILEFL 470
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRR---LKVSAASVI 552
M +L ++ + + ++G VG+ E + + LRR + VS S+I
Sbjct: 471 EEWSM-ENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 529
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IEL 600
D E + G L K + R+I E N +E
Sbjct: 530 RDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEY 589
Query: 601 IGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
I E+ M PD + A+ +T H EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 590 IDTLEEETVMLAMTPDDLQE-KEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNT 648
Query: 658 YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 649 YQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIA 708
Query: 718 AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDAK--S 774
+YTGY+ ED++I+N+S+VDRG Y++ S G ++ + +K R +
Sbjct: 709 SYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHA 768
Query: 775 LHSVIDSDGL 784
++ +D DGL
Sbjct: 769 IYDKLDDDGL 778
Score = 129 (50.5 bits), Expect = 2.7e-78, Sum P(3) = 2.7e-78
Identities = 77/344 (22%), Positives = 143/344 (41%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 34 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 93
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 94 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 148
Query: 151 CVRKD-QSSVTLKLYYLLNGSVRLGFWLQGKE------YL---LPVGIVLKALVDTNDLE 200
C+ + + T+ + L G G+ Y+ +P+ IV +AL +D +
Sbjct: 149 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 208
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
I H+ YD + P + E VK L E + + L IG +P
Sbjct: 209 ILEHII--YDFE---------DPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAKP-- 253
Query: 260 DGLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 254 -GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 312
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
N+ + L G L+ + ++ L++ + Q I+ GK F+
Sbjct: 313 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFN 355
Score = 57 (25.1 bits), Expect = 2.7e-78, Sum P(3) = 2.7e-78
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C+ + V MPY + L EL +M+I
Sbjct: 1062 CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1092
>UNIPROTKB|F1NCB0 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 GeneTree:ENSGT00690000102234
EMBL:AADN02009110 EMBL:AADN02009111 IPI:IPI00823005
Ensembl:ENSGALT00000037965 ArrayExpress:F1NCB0 Uniprot:F1NCB0
Length = 1174
Score = 713 (256.0 bits), Expect = 7.7e-78, Sum P(3) = 7.7e-78
Identities = 188/499 (37%), Positives = 256/499 (51%)
Query: 605 EQVFMEIRCPDG-GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
E+ M PD + G TH EIHP+ +L V A++ P+ DHNQSPRN YQ M
Sbjct: 670 EETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMG 729
Query: 664 KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
KQ MG + R D + L PQ P+V T + E P G N+IVA+ +YTGY+
Sbjct: 730 KQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYN 789
Query: 724 MEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDAK--SLHSVID 780
ED++I+N+S+VDRG Y++ S G ++ + +K R +++ +D
Sbjct: 790 QEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDKLD 849
Query: 781 SDGL--PYV---GQMIHPGEPYCSIYDKTTNSWRTNSR--KGSESVFV---DYVAVD--M 828
DGL P V G + G+ ++ + TN R K S F+ + VD M
Sbjct: 850 DDGLIAPGVRVSGDDVIIGKTV-TLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQVM 908
Query: 829 KNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
K IR R R P IGDKF+SRHGQKG C + DMPF+ G+ PD+II
Sbjct: 909 VTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-CEGITPDIII 967
Query: 888 NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE 947
NPHA PSRMTI L+E + K + G+ DATPF ++V V ++
Sbjct: 968 NPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN--------------VQKISN 1013
Query: 948 MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
+L G++ G EVLY+G G ++T +IFIGP YYQRL+HMV DK R+ G + + RQ
Sbjct: 1014 LLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQ 1073
Query: 1008 PXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA-TFIH 1066
P FGEMERD +AHGAA L +RL SD + VC+LCG + A T H
Sbjct: 1074 PMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTH 1133
Query: 1067 PQK-RAIREIGGLPPARAP 1084
+ R R + R P
Sbjct: 1134 TYECRGCRNKTQISLVRMP 1152
Score = 366 (133.9 bits), Expect = 7.5e-30, Sum P(2) = 7.5e-30
Identities = 149/549 (27%), Positives = 234/549 (42%)
Query: 261 GLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I+ GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ Y S G+ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA-----YISVGS------QPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRR---LKVSAASVI 552
M +L ++ + + ++G VG+ E + + LRR + VS S+I
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 604
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IEL 600
D E + G L K + R+I E N +E
Sbjct: 605 RDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEY 664
Query: 601 IGPFEQ-VFMEIRCPDG-GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
I E+ M PD + G TH EIHP+ +L V A++ P+ DHNQSPRN Y
Sbjct: 665 IDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 724
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
Q M KQ MG + R D + L PQ P+V T + E P G N+IVA+ +
Sbjct: 725 QSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIAS 784
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDAK--SL 775
YTGY+ ED++I+N+S+VDRG Y++ S G ++ + +K R ++
Sbjct: 785 YTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAI 844
Query: 776 HSVIDSDGL 784
+ +D DGL
Sbjct: 845 YDKLDDDGL 853
Score = 129 (50.5 bits), Expect = 7.7e-78, Sum P(3) = 7.7e-78
Identities = 77/344 (22%), Positives = 143/344 (41%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSVRLGFWLQGKE------YL---LPVGIVLKALVDTNDLE 200
C+ + + T+ + L G G+ Y+ +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
I H+ YD + P + E VK L E + + L IG +P
Sbjct: 284 ILEHII--YDFE---------DPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAKP-- 328
Query: 260 DGLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 329 -GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 387
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
N+ + L G L+ + ++ L++ + Q I+ GK F+
Sbjct: 388 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFN 430
Score = 57 (25.1 bits), Expect = 7.7e-78, Sum P(3) = 7.7e-78
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C+ + V MPY + L EL +M+I
Sbjct: 1137 CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Score = 37 (18.1 bits), Expect = 3.4e-68, Sum P(3) = 3.4e-68
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 472 VASYYDSRGNIR 483
++SY+D +G +R
Sbjct: 30 ISSYFDEKGLVR 41
>UNIPROTKB|C9J2Y9 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HGNC:HGNC:9188 IPI:IPI00894141 ProteinModelPortal:C9J2Y9
STRING:C9J2Y9 Ensembl:ENST00000441246 ArrayExpress:C9J2Y9
Bgee:C9J2Y9 Uniprot:C9J2Y9
Length = 1167
Score = 712 (255.7 bits), Expect = 9.1e-78, Sum P(3) = 9.1e-78
Identities = 183/475 (38%), Positives = 249/475 (52%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D + L
Sbjct: 687 THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYY 746
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V T + E P G N+IVA+ +YTGY+ ED++I+N+S+VDRG Y++
Sbjct: 747 PQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS 806
Query: 748 ETIDLSDDG-NKVDRGQKLFRRNKDAK--SLHSVIDSDGL--PYV---GQMIHPGEPYCS 799
S G ++ + +K R +++ +D DGL P V G + G+ +
Sbjct: 807 YKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-T 865
Query: 800 IYDKTTNSWRTNSR--KGSESVFV---DYVAVD--MKNSKNLPQK-ANIRFRHTRNPIIG 851
+ + TN R K S F+ + VD M K IR R R P IG
Sbjct: 866 LPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIG 925
Query: 852 DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
DKF+SRHGQKG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K +
Sbjct: 926 DKFASRHGQKGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSA 984
Query: 912 LHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTEL 971
G+ DATPF ++V V ++ +L G++ G EVLY+G G ++
Sbjct: 985 NKGEIGDATPFNDAVN--------------VQKISNLLSDYGYHLRGNEVLYNGFTGRKI 1030
Query: 972 TCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAH 1031
T +IFIGP YYQRL+HMV DK R+ G + + RQP FGEMERD +AH
Sbjct: 1031 TSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAH 1090
Query: 1032 GAAYLLHDRLHTCSDYHVADVCSLCGSVLTA-TFIHPQK-RAIREIGGLPPARAP 1084
GAA L +RL SD + VC+LCG + A T H + R R + R P
Sbjct: 1091 GAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1145
Score = 360 (131.8 bits), Expect = 3.3e-29, Sum P(2) = 3.3e-29
Identities = 149/550 (27%), Positives = 236/550 (42%)
Query: 261 GLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 322 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 381
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I+ GK F+ LA IK ++
Sbjct: 382 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFNL-ELA-IK-------TR 431
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 432 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 489
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ Y S G+ + IL L
Sbjct: 490 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA-----YISVGS------QPSPILEFL 538
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRR---LKVSAASVI 552
M +L ++ + + ++G VG+ E + + LRR + VS S+I
Sbjct: 539 EEWSM-ENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 597
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IEL 600
D E + G L K + R+I E N +E
Sbjct: 598 RDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEY 657
Query: 601 IGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
I E+ M PD + A+ +T H EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 658 IDTLEEETVMLAMTPDDLQE-KEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNT 716
Query: 658 YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 717 YQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIA 776
Query: 718 AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDAK--S 774
+YTGY+ ED++I+N+S+VDRG Y++ S G ++ + +K R +
Sbjct: 777 SYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHA 836
Query: 775 LHSVIDSDGL 784
++ +D DGL
Sbjct: 837 IYDKLDDDGL 846
Score = 129 (50.5 bits), Expect = 9.1e-78, Sum P(3) = 9.1e-78
Identities = 77/344 (22%), Positives = 143/344 (41%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 102 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 161
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 162 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 216
Query: 151 CVRKD-QSSVTLKLYYLLNGSVRLGFWLQGKE------YL---LPVGIVLKALVDTNDLE 200
C+ + + T+ + L G G+ Y+ +P+ IV +AL +D +
Sbjct: 217 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 276
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
I H+ YD + P + E VK L E + + L IG +P
Sbjct: 277 ILEHII--YDFE---------DPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAKP-- 321
Query: 260 DGLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 322 -GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 380
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
N+ + L G L+ + ++ L++ + Q I+ GK F+
Sbjct: 381 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFN 423
Score = 57 (25.1 bits), Expect = 9.1e-78, Sum P(3) = 9.1e-78
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C+ + V MPY + L EL +M+I
Sbjct: 1130 CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1160
Score = 37 (18.1 bits), Expect = 4.0e-68, Sum P(3) = 4.0e-68
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 472 VASYYDSRGNIR 483
++SY+D +G +R
Sbjct: 23 ISSYFDEKGLVR 34
>UNIPROTKB|P30876 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471057
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
HOGENOM:HOG000222962 EMBL:X63563 EMBL:AK289823 EMBL:BC023503
EMBL:AF055028 IPI:IPI00027808 PIR:S28976 RefSeq:NP_000929.1
UniGene:Hs.602757 ProteinModelPortal:P30876 DIP:DIP-32910N
IntAct:P30876 MINT:MINT-1216897 STRING:P30876 PhosphoSite:P30876
DMDM:401012 PaxDb:P30876 PeptideAtlas:P30876 PRIDE:P30876
Ensembl:ENST00000314595 Ensembl:ENST00000381227 GeneID:5431
KEGG:hsa:5431 UCSC:uc003hcl.1 CTD:5431 GeneCards:GC04P057760
HGNC:HGNC:9188 HPA:HPA037506 MIM:180661 neXtProt:NX_P30876
PharmGKB:PA33508 HOVERGEN:HBG017744 InParanoid:P30876
OrthoDB:EOG4JQ3WQ PhylomeDB:P30876 GenomeRNAi:5431 NextBio:21013
ArrayExpress:P30876 Bgee:P30876 CleanEx:HS_POLR2B
Genevestigator:P30876 GermOnline:ENSG00000047315 Uniprot:P30876
Length = 1174
Score = 712 (255.7 bits), Expect = 1.0e-77, Sum P(3) = 1.0e-77
Identities = 183/475 (38%), Positives = 249/475 (52%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D + L
Sbjct: 694 THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYY 753
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V T + E P G N+IVA+ +YTGY+ ED++I+N+S+VDRG Y++
Sbjct: 754 PQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS 813
Query: 748 ETIDLSDDG-NKVDRGQKLFRRNKDAK--SLHSVIDSDGL--PYV---GQMIHPGEPYCS 799
S G ++ + +K R +++ +D DGL P V G + G+ +
Sbjct: 814 YKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-T 872
Query: 800 IYDKTTNSWRTNSR--KGSESVFV---DYVAVD--MKNSKNLPQK-ANIRFRHTRNPIIG 851
+ + TN R K S F+ + VD M K IR R R P IG
Sbjct: 873 LPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIG 932
Query: 852 DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
DKF+SRHGQKG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K +
Sbjct: 933 DKFASRHGQKGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSA 991
Query: 912 LHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTEL 971
G+ DATPF ++V V ++ +L G++ G EVLY+G G ++
Sbjct: 992 NKGEIGDATPFNDAVN--------------VQKISNLLSDYGYHLRGNEVLYNGFTGRKI 1037
Query: 972 TCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAH 1031
T +IFIGP YYQRL+HMV DK R+ G + + RQP FGEMERD +AH
Sbjct: 1038 TSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAH 1097
Query: 1032 GAAYLLHDRLHTCSDYHVADVCSLCGSVLTA-TFIHPQK-RAIREIGGLPPARAP 1084
GAA L +RL SD + VC+LCG + A T H + R R + R P
Sbjct: 1098 GAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Score = 360 (131.8 bits), Expect = 3.4e-29, Sum P(2) = 3.4e-29
Identities = 149/550 (27%), Positives = 236/550 (42%)
Query: 261 GLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I+ GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ Y S G+ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA-----YISVGS------QPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRR---LKVSAASVI 552
M +L ++ + + ++G VG+ E + + LRR + VS S+I
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 604
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IEL 600
D E + G L K + R+I E N +E
Sbjct: 605 RDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEY 664
Query: 601 IGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
I E+ M PD + A+ +T H EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 665 IDTLEEETVMLAMTPDDLQE-KEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNT 723
Query: 658 YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 724 YQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIA 783
Query: 718 AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDAK--S 774
+YTGY+ ED++I+N+S+VDRG Y++ S G ++ + +K R +
Sbjct: 784 SYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHA 843
Query: 775 LHSVIDSDGL 784
++ +D DGL
Sbjct: 844 IYDKLDDDGL 853
Score = 129 (50.5 bits), Expect = 1.0e-77, Sum P(3) = 1.0e-77
Identities = 77/344 (22%), Positives = 143/344 (41%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSVRLGFWLQGKE------YL---LPVGIVLKALVDTNDLE 200
C+ + + T+ + L G G+ Y+ +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
I H+ YD + P + E VK L E + + L IG +P
Sbjct: 284 ILEHII--YDFE---------DPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAKP-- 328
Query: 260 DGLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 329 -GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 387
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
N+ + L G L+ + ++ L++ + Q I+ GK F+
Sbjct: 388 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFN 430
Score = 57 (25.1 bits), Expect = 1.0e-77, Sum P(3) = 1.0e-77
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C+ + V MPY + L EL +M+I
Sbjct: 1137 CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Score = 37 (18.1 bits), Expect = 4.5e-68, Sum P(3) = 4.5e-68
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 472 VASYYDSRGNIR 483
++SY+D +G +R
Sbjct: 30 ISSYFDEKGLVR 41
>MGI|MGI:2388280 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:2388280 PANTHER:PTHR20856 GO:GO:0046872
GO:GO:0003677 GO:GO:0003682 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:BC038472 IPI:IPI00320034
RefSeq:NP_722493.2 UniGene:Mm.273217 ProteinModelPortal:Q8CFI7
DIP:DIP-57023N IntAct:Q8CFI7 STRING:Q8CFI7 PhosphoSite:Q8CFI7
PaxDb:Q8CFI7 PRIDE:Q8CFI7 Ensembl:ENSMUST00000031167 GeneID:231329
KEGG:mmu:231329 UCSC:uc008xwe.2 InParanoid:Q8CFI7 ChiTaRS:POLR2B
NextBio:380519 Bgee:Q8CFI7 CleanEx:MM_POLR2B Genevestigator:Q8CFI7
GermOnline:ENSMUSG00000029250 Uniprot:Q8CFI7
Length = 1174
Score = 712 (255.7 bits), Expect = 1.0e-77, Sum P(3) = 1.0e-77
Identities = 183/475 (38%), Positives = 249/475 (52%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D + L
Sbjct: 694 THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYY 753
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V T + E P G N+IVA+ +YTGY+ ED++I+N+S+VDRG Y++
Sbjct: 754 PQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS 813
Query: 748 ETIDLSDDG-NKVDRGQKLFRRNKDAK--SLHSVIDSDGL--PYV---GQMIHPGEPYCS 799
S G ++ + +K R +++ +D DGL P V G + G+ +
Sbjct: 814 YKEQESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTV-T 872
Query: 800 IYDKTTNSWRTNSR--KGSESVFV---DYVAVD--MKNSKNLPQK-ANIRFRHTRNPIIG 851
+ + TN R K S F+ + VD M K IR R R P IG
Sbjct: 873 LPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIG 932
Query: 852 DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
DKF+SRHGQKG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K +
Sbjct: 933 DKFASRHGQKGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSA 991
Query: 912 LHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTEL 971
G+ DATPF ++V V ++ +L G++ G EVLY+G G ++
Sbjct: 992 NKGEIGDATPFNDAVN--------------VQKISNLLSDYGYHLRGNEVLYNGFTGRKI 1037
Query: 972 TCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAH 1031
T +IFIGP YYQRL+HMV DK R+ G + + RQP FGEMERD +AH
Sbjct: 1038 TSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAH 1097
Query: 1032 GAAYLLHDRLHTCSDYHVADVCSLCGSVLTA-TFIHPQK-RAIREIGGLPPARAP 1084
GAA L +RL SD + VC+LCG + A T H + R R + R P
Sbjct: 1098 GAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Score = 360 (131.8 bits), Expect = 3.4e-29, Sum P(2) = 3.4e-29
Identities = 149/550 (27%), Positives = 236/550 (42%)
Query: 261 GLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I+ GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ Y S G+ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA-----YISVGS------QPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRR---LKVSAASVI 552
M +L ++ + + ++G VG+ E + + LRR + VS S+I
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 604
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IEL 600
D E + G L K + R+I E N +E
Sbjct: 605 RDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEY 664
Query: 601 IGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
I E+ M PD + A+ +T H EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 665 IDTLEEETVMLAMTPDDLQE-KEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNT 723
Query: 658 YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 724 YQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIA 783
Query: 718 AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDAK--S 774
+YTGY+ ED++I+N+S+VDRG Y++ S G ++ + +K R +
Sbjct: 784 SYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHA 843
Query: 775 LHSVIDSDGL 784
++ +D DGL
Sbjct: 844 IYEKLDDDGL 853
Score = 129 (50.5 bits), Expect = 1.0e-77, Sum P(3) = 1.0e-77
Identities = 77/344 (22%), Positives = 143/344 (41%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSVRLGFWLQGKE------YL---LPVGIVLKALVDTNDLE 200
C+ + + T+ + L G G+ Y+ +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
I H+ YD + P + E VK L E + + L IG +P
Sbjct: 284 ILEHII--YDFE---------DPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAKP-- 328
Query: 260 DGLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 329 -GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 387
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
N+ + L G L+ + ++ L++ + Q I+ GK F+
Sbjct: 388 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFN 430
Score = 57 (25.1 bits), Expect = 1.0e-77, Sum P(3) = 1.0e-77
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C+ + V MPY + L EL +M+I
Sbjct: 1137 CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Score = 37 (18.1 bits), Expect = 4.5e-68, Sum P(3) = 4.5e-68
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 472 VASYYDSRGNIR 483
++SY+D +G +R
Sbjct: 30 ISSYFDEKGLVR 41
>RGD|1309477 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed) polypeptide B"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA;ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1309477 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 GeneTree:ENSGT00690000102234 CTD:5431
EMBL:CH473981 RefSeq:NP_001099472.1 UniGene:Rn.153952
Ensembl:ENSRNOT00000039252 GeneID:289561 KEGG:rno:289561
NextBio:629984 Uniprot:G3V8Y5
Length = 1174
Score = 712 (255.7 bits), Expect = 1.0e-77, Sum P(3) = 1.0e-77
Identities = 183/475 (38%), Positives = 249/475 (52%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D + L
Sbjct: 694 THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYY 753
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V T + E P G N+IVA+ +YTGY+ ED++I+N+S+VDRG Y++
Sbjct: 754 PQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS 813
Query: 748 ETIDLSDDG-NKVDRGQKLFRRNKDAK--SLHSVIDSDGL--PYV---GQMIHPGEPYCS 799
S G ++ + +K R +++ +D DGL P V G + G+ +
Sbjct: 814 YKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-T 872
Query: 800 IYDKTTNSWRTNSR--KGSESVFV---DYVAVD--MKNSKNLPQK-ANIRFRHTRNPIIG 851
+ + TN R K S F+ + VD M K IR R R P IG
Sbjct: 873 LPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIG 932
Query: 852 DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
DKF+SRHGQKG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K +
Sbjct: 933 DKFASRHGQKGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSA 991
Query: 912 LHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTEL 971
G+ DATPF ++V V ++ +L G++ G EVLY+G G ++
Sbjct: 992 NKGEIGDATPFNDAVN--------------VQKISNLLSDYGYHLRGNEVLYNGFTGRKI 1037
Query: 972 TCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAH 1031
T +IFIGP YYQRL+HMV DK R+ G + + RQP FGEMERD +AH
Sbjct: 1038 TSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAH 1097
Query: 1032 GAAYLLHDRLHTCSDYHVADVCSLCGSVLTA-TFIHPQK-RAIREIGGLPPARAP 1084
GAA L +RL SD + VC+LCG + A T H + R R + R P
Sbjct: 1098 GAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Score = 360 (131.8 bits), Expect = 3.4e-29, Sum P(2) = 3.4e-29
Identities = 149/550 (27%), Positives = 236/550 (42%)
Query: 261 GLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I+ GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ Y S G+ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA-----YISVGS------QPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRR---LKVSAASVI 552
M +L ++ + + ++G VG+ E + + LRR + VS S+I
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 604
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IEL 600
D E + G L K + R+I E N +E
Sbjct: 605 RDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEY 664
Query: 601 IGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
I E+ M PD + A+ +T H EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 665 IDTLEEETVMLAMTPDDLQE-KEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNT 723
Query: 658 YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 724 YQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIA 783
Query: 718 AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDAK--S 774
+YTGY+ ED++I+N+S+VDRG Y++ S G ++ + +K R +
Sbjct: 784 SYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHA 843
Query: 775 LHSVIDSDGL 784
++ +D DGL
Sbjct: 844 IYDKLDDDGL 853
Score = 129 (50.5 bits), Expect = 1.0e-77, Sum P(3) = 1.0e-77
Identities = 77/344 (22%), Positives = 143/344 (41%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSVRLGFWLQGKE------YL---LPVGIVLKALVDTNDLE 200
C+ + + T+ + L G G+ Y+ +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
I H+ YD + P + E VK L E + + L IG +P
Sbjct: 284 ILEHII--YDFE---------DPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAKP-- 328
Query: 260 DGLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 329 -GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 387
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
N+ + L G L+ + ++ L++ + Q I+ GK F+
Sbjct: 388 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFN 430
Score = 57 (25.1 bits), Expect = 1.0e-77, Sum P(3) = 1.0e-77
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C+ + V MPY + L EL +M+I
Sbjct: 1137 CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Score = 37 (18.1 bits), Expect = 4.5e-68, Sum P(3) = 4.5e-68
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 472 VASYYDSRGNIR 483
++SY+D +G +R
Sbjct: 30 ISSYFDEKGLVR 41
>UNIPROTKB|I3LGP4 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:FP476021 EMBL:CU984592 RefSeq:XP_003129085.2 UniGene:Ssc.55326
Ensembl:ENSSSCT00000023257 GeneID:397001 KEGG:ssc:397001
Uniprot:I3LGP4
Length = 1167
Score = 711 (255.3 bits), Expect = 1.2e-77, Sum P(3) = 1.2e-77
Identities = 183/475 (38%), Positives = 249/475 (52%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D + L
Sbjct: 687 THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYY 746
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V T + E P G N+IVA+ +YTGY+ ED++I+N+S+VDRG Y++
Sbjct: 747 PQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS 806
Query: 748 ETIDLSDDG-NKVDRGQKLFRRNKDAK--SLHSVIDSDGL--PYV---GQMIHPGEPYCS 799
S G ++ + +K R +++ +D DGL P V G + G+ +
Sbjct: 807 YKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-T 865
Query: 800 IYDKTTNSWRTNSR--KGSESVFV---DYVAVD--MKNSKNLPQK-ANIRFRHTRNPIIG 851
+ + TN R K S F+ + VD M K IR R R P IG
Sbjct: 866 LPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIG 925
Query: 852 DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
DKF+SRHGQKG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K +
Sbjct: 926 DKFASRHGQKGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSA 984
Query: 912 LHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTEL 971
G+ DATPF ++V V ++ +L G++ G EVLY+G G ++
Sbjct: 985 NKGEIGDATPFNDAVN--------------VQKISNLLSDYGYHLRGNEVLYNGFTGRKI 1030
Query: 972 TCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAH 1031
T +IFIGP YYQRL+HMV DK R+ G + + RQP FGEMERD +AH
Sbjct: 1031 TSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAH 1090
Query: 1032 GAAYLLHDRLHTCSDYHVADVCSLCGSVLTA-TFIHPQK-RAIREIGGLPPARAP 1084
GAA L +RL SD + VC+LCG + A T H + R R + R P
Sbjct: 1091 GAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1145
Score = 360 (131.8 bits), Expect = 3.3e-29, Sum P(2) = 3.3e-29
Identities = 149/550 (27%), Positives = 236/550 (42%)
Query: 261 GLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 322 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 381
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I+ GK F+ LA IK ++
Sbjct: 382 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFNL-ELA-IK-------TR 431
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 432 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 489
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ Y S G+ + IL L
Sbjct: 490 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA-----YISVGS------QPSPILEFL 538
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRR---LKVSAASVI 552
M +L ++ + + ++G VG+ E + + LRR + VS S+I
Sbjct: 539 EEWSM-ENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 597
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IEL 600
D E + G L K + R+I E N +E
Sbjct: 598 RDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEY 657
Query: 601 IGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
I E+ M PD + A+ +T H EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 658 IDTLEEETVMLAMTPDDLQE-KEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNT 716
Query: 658 YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 717 YQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIA 776
Query: 718 AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDAK--S 774
+YTGY+ ED++I+N+S+VDRG Y++ S G ++ + +K R +
Sbjct: 777 SYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHA 836
Query: 775 LHSVIDSDGL 784
++ +D DGL
Sbjct: 837 IYDKLDDDGL 846
Score = 129 (50.5 bits), Expect = 1.2e-77, Sum P(3) = 1.2e-77
Identities = 77/344 (22%), Positives = 143/344 (41%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 102 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 161
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 162 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 216
Query: 151 CVRKD-QSSVTLKLYYLLNGSVRLGFWLQGKE------YL---LPVGIVLKALVDTNDLE 200
C+ + + T+ + L G G+ Y+ +P+ IV +AL +D +
Sbjct: 217 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 276
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
I H+ YD + P + E VK L E + + L IG +P
Sbjct: 277 ILEHII--YDFE---------DPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAKP-- 321
Query: 260 DGLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 322 -GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 380
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
N+ + L G L+ + ++ L++ + Q I+ GK F+
Sbjct: 381 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFN 423
Score = 57 (25.1 bits), Expect = 1.2e-77, Sum P(3) = 1.2e-77
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C+ + V MPY + L EL +M+I
Sbjct: 1130 CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1160
Score = 37 (18.1 bits), Expect = 5.5e-68, Sum P(3) = 5.5e-68
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 472 VASYYDSRGNIR 483
++SY+D +G +R
Sbjct: 23 ISSYFDEKGLVR 34
>UNIPROTKB|A5PJW8 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:DAAA02017743
EMBL:BC142267 IPI:IPI00701366 RefSeq:NP_001092552.1
UniGene:Bt.103151 STRING:A5PJW8 Ensembl:ENSBTAT00000025800
GeneID:538184 KEGG:bta:538184 InParanoid:A5PJW8 NextBio:20877300
Uniprot:A5PJW8
Length = 1174
Score = 711 (255.3 bits), Expect = 1.4e-77, Sum P(3) = 1.4e-77
Identities = 183/475 (38%), Positives = 249/475 (52%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D + L
Sbjct: 694 THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYY 753
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V T + E P G N+IVA+ +YTGY+ ED++I+N+S+VDRG Y++
Sbjct: 754 PQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS 813
Query: 748 ETIDLSDDG-NKVDRGQKLFRRNKDAK--SLHSVIDSDGL--PYV---GQMIHPGEPYCS 799
S G ++ + +K R +++ +D DGL P V G + G+ +
Sbjct: 814 YKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-T 872
Query: 800 IYDKTTNSWRTNSR--KGSESVFV---DYVAVD--MKNSKNLPQK-ANIRFRHTRNPIIG 851
+ + TN R K S F+ + VD M K IR R R P IG
Sbjct: 873 LPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIG 932
Query: 852 DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
DKF+SRHGQKG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K +
Sbjct: 933 DKFASRHGQKGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSA 991
Query: 912 LHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTEL 971
G+ DATPF ++V V ++ +L G++ G EVLY+G G ++
Sbjct: 992 NKGEIGDATPFNDAVN--------------VQKISNLLSDYGYHLRGNEVLYNGFTGRKI 1037
Query: 972 TCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAH 1031
T +IFIGP YYQRL+HMV DK R+ G + + RQP FGEMERD +AH
Sbjct: 1038 TSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAH 1097
Query: 1032 GAAYLLHDRLHTCSDYHVADVCSLCGSVLTA-TFIHPQK-RAIREIGGLPPARAP 1084
GAA L +RL SD + VC+LCG + A T H + R R + R P
Sbjct: 1098 GAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Score = 360 (131.8 bits), Expect = 3.4e-29, Sum P(2) = 3.4e-29
Identities = 149/550 (27%), Positives = 236/550 (42%)
Query: 261 GLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I+ GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ Y S G+ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA-----YISVGS------QPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRR---LKVSAASVI 552
M +L ++ + + ++G VG+ E + + LRR + VS S+I
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 604
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IEL 600
D E + G L K + R+I E N +E
Sbjct: 605 RDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEY 664
Query: 601 IGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
I E+ M PD + A+ +T H EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 665 IDTLEEETVMLAMTPDDLQE-KEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNT 723
Query: 658 YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 724 YQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIA 783
Query: 718 AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDAK--S 774
+YTGY+ ED++I+N+S+VDRG Y++ S G ++ + +K R +
Sbjct: 784 SYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHA 843
Query: 775 LHSVIDSDGL 784
++ +D DGL
Sbjct: 844 IYDKLDDDGL 853
Score = 129 (50.5 bits), Expect = 1.4e-77, Sum P(3) = 1.4e-77
Identities = 77/344 (22%), Positives = 143/344 (41%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSVRLGFWLQGKE------YL---LPVGIVLKALVDTNDLE 200
C+ + + T+ + L G G+ Y+ +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
I H+ YD + P + E VK L E + + L IG +P
Sbjct: 284 ILEHII--YDFE---------DPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAKP-- 328
Query: 260 DGLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 329 -GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 387
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
N+ + L G L+ + ++ L++ + Q I+ GK F+
Sbjct: 388 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFN 430
Score = 57 (25.1 bits), Expect = 1.4e-77, Sum P(3) = 1.4e-77
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C+ + V MPY + L EL +M+I
Sbjct: 1137 CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Score = 37 (18.1 bits), Expect = 6.1e-68, Sum P(3) = 6.1e-68
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 472 VASYYDSRGNIR 483
++SY+D +G +R
Sbjct: 30 ISSYFDEKGLVR 41
>UNIPROTKB|E2RNN5 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:AAEX03009093 RefSeq:XP_532382.2 ProteinModelPortal:E2RNN5
Ensembl:ENSCAFT00000003641 GeneID:475152 KEGG:cfa:475152
Uniprot:E2RNN5
Length = 1174
Score = 711 (255.3 bits), Expect = 1.4e-77, Sum P(3) = 1.4e-77
Identities = 183/475 (38%), Positives = 249/475 (52%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D + L
Sbjct: 694 THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYY 753
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V T + E P G N+IVA+ +YTGY+ ED++I+N+S+VDRG Y++
Sbjct: 754 PQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS 813
Query: 748 ETIDLSDDG-NKVDRGQKLFRRNKDAK--SLHSVIDSDGL--PYV---GQMIHPGEPYCS 799
S G ++ + +K R +++ +D DGL P V G + G+ +
Sbjct: 814 YKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-T 872
Query: 800 IYDKTTNSWRTNSR--KGSESVFV---DYVAVD--MKNSKNLPQK-ANIRFRHTRNPIIG 851
+ + TN R K S F+ + VD M K IR R R P IG
Sbjct: 873 LPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIG 932
Query: 852 DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
DKF+SRHGQKG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K +
Sbjct: 933 DKFASRHGQKGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSA 991
Query: 912 LHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTEL 971
G+ DATPF ++V V ++ +L G++ G EVLY+G G ++
Sbjct: 992 NKGEIGDATPFNDAVN--------------VQKISNLLSDYGYHLRGNEVLYNGFTGRKI 1037
Query: 972 TCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAH 1031
T +IFIGP YYQRL+HMV DK R+ G + + RQP FGEMERD +AH
Sbjct: 1038 TSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAH 1097
Query: 1032 GAAYLLHDRLHTCSDYHVADVCSLCGSVLTA-TFIHPQK-RAIREIGGLPPARAP 1084
GAA L +RL SD + VC+LCG + A T H + R R + R P
Sbjct: 1098 GAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1152
Score = 360 (131.8 bits), Expect = 3.4e-29, Sum P(2) = 3.4e-29
Identities = 149/550 (27%), Positives = 236/550 (42%)
Query: 261 GLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I+ GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ Y S G+ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA-----YISVGS------QPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRR---LKVSAASVI 552
M +L ++ + + ++G VG+ E + + LRR + VS S+I
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 604
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IEL 600
D E + G L K + R+I E N +E
Sbjct: 605 RDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEY 664
Query: 601 IGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
I E+ M PD + A+ +T H EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 665 IDTLEEETVMLAMTPDDLQE-KEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNT 723
Query: 658 YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 724 YQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIA 783
Query: 718 AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDAK--S 774
+YTGY+ ED++I+N+S+VDRG Y++ S G ++ + +K R +
Sbjct: 784 SYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHA 843
Query: 775 LHSVIDSDGL 784
++ +D DGL
Sbjct: 844 IYDKLDDDGL 853
Score = 129 (50.5 bits), Expect = 1.4e-77, Sum P(3) = 1.4e-77
Identities = 77/344 (22%), Positives = 143/344 (41%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSVRLGFWLQGKE------YL---LPVGIVLKALVDTNDLE 200
C+ + + T+ + L G G+ Y+ +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
I H+ YD + P + E VK L E + + L IG +P
Sbjct: 284 ILEHII--YDFE---------DPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAKP-- 328
Query: 260 DGLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 329 -GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 387
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
N+ + L G L+ + ++ L++ + Q I+ GK F+
Sbjct: 388 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFN 430
Score = 57 (25.1 bits), Expect = 1.4e-77, Sum P(3) = 1.4e-77
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C+ + V MPY + L EL +M+I
Sbjct: 1137 CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Score = 37 (18.1 bits), Expect = 6.1e-68, Sum P(3) = 6.1e-68
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 472 VASYYDSRGNIR 483
++SY+D +G +R
Sbjct: 30 ISSYFDEKGLVR 41
>POMBASE|SPAC23G3.01 [details] [associations]
symbol:rpb2 "RNA polymerase II complex subunit Rpb2"
species:4896 "Schizosaccharomyces pombe" [GO:0000775 "chromosome,
centromeric region" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IGI] [GO:0031048 "chromatin
silencing by small RNA" evidence=IMP] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IGI] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PomBase:SPAC23G3.01 PANTHER:PTHR20856 GO:GO:0005829
EMBL:CU329670 GO:GO:0000775 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0003723 GO:GO:0000790 GO:GO:0006366
GO:GO:0031048 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:3H0G
PDBsum:3H0G KO:K03010 OMA:IMIVFRA HOGENOM:HOG000222962 EMBL:D13337
PIR:S35548 PIR:T50175 RefSeq:NP_593101.2 ProteinModelPortal:Q02061
IntAct:Q02061 MINT:MINT-1214536 STRING:Q02061
EnsemblFungi:SPAC23G3.01.1 GeneID:2541446 KEGG:spo:SPAC23G3.01
OrthoDB:EOG45HW5D EvolutionaryTrace:Q02061 NextBio:20802548
Uniprot:Q02061
Length = 1210
Score = 702 (252.2 bits), Expect = 8.8e-77, Sum P(4) = 8.8e-77
Identities = 170/453 (37%), Positives = 243/453 (53%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP +L ++A++ P+ DHNQSPRN YQ M KQ MG + + R D L
Sbjct: 728 THCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYY 787
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+ T + E P G NAIVA+L Y+GY+ ED++I+N++S+DRG+ Y+T
Sbjct: 788 PQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRT 847
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDS---DGL--PYV---GQMIHPGE--PY 797
T G V + R+ + H D DGL P G+ I G+ P
Sbjct: 848 YTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPI 907
Query: 798 CSIYDKTTNSWRTNSRKGSESVF--VDYVAVDM----KNSKNLPQKANIRFRHTRNPIIG 851
+++ + ++++ + + VD N + L + +R R TR P IG
Sbjct: 908 PLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGL-KFVKVRMRSTRIPQIG 966
Query: 852 DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
DKF+SRHGQKG + DMPFS G+ PD+IINPHA PSRMT+A L+E +K +
Sbjct: 967 DKFASRHGQKGTIGMTYRHEDMPFSA-QGIVPDIIINPHAIPSRMTVAHLVECQLSKVSA 1025
Query: 912 LHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTEL 971
L G DATPF TD + V+ + ++LR+ GF G EV+Y G G +L
Sbjct: 1026 LSGFEGDATPF------------TDVT---VEAVSKLLRSHGFQSRGFEVMYHGHTGRKL 1070
Query: 972 TCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAH 1031
++F+GP YYQRL+H+V DK R+ G + +TRQP FGEMERD ++H
Sbjct: 1071 VAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISH 1130
Query: 1032 GAAYLLHDRLHTCSDYHVADVCSLCGSVLTATF 1064
G + +L +RL CSD + VC +CG + A++
Sbjct: 1131 GCSSVLRERLFDCSDAYRVIVCDICGLIAIASY 1163
Score = 125 (49.1 bits), Expect = 8.8e-77, Sum P(4) = 8.8e-77
Identities = 64/298 (21%), Positives = 121/298 (40%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G+ P+ML++ C L G +L L E + GGYFI+NG E+V I+ ++ ++V
Sbjct: 153 GKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEKV----IIAQERSAANIV 208
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSV--TLKLYYLLNGSVRLGFWLQGK-EYL---LP 185
+ F+ IR + S + ++++ + + G ++ Y+ +P
Sbjct: 209 QV-FKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQTIRATLPYIRSDIP 267
Query: 186 VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
+ IV +AL D +I H+ CYD + + P + E I QD +
Sbjct: 268 IVIVFRALGVVPDRDILEHI--CYDPN-DFQMLEMMKPCIEEAFVI-----QDKDIA--- 316
Query: 246 QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLF 301
L +IG+ G+ E A +++ + H+ K L +M+ ++
Sbjct: 317 --LDYIGKRGSTT--GVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRML 372
Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
D+ D + + L G L+ + R K +Q +E N ++F+
Sbjct: 373 LCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETN-REFN 429
Score = 122 (48.0 bits), Expect = 1.8e-76, Sum P(4) = 1.8e-76
Identities = 72/314 (22%), Positives = 120/314 (38%)
Query: 248 LQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLFSL 303
L +IG+ G+ E A +++ + H+ K L +M+ ++
Sbjct: 317 LDYIGKRGSTT--GVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLC 374
Query: 304 VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNL 363
D+ D + + L G L+ + R K +Q +E N + FNL
Sbjct: 375 ALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNRE----FNL 430
Query: 364 ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
K S I + L TG Q + R G + R F +S R
Sbjct: 431 TLAVK------SNIITNGLRYSLATGNWGDQKR-SMVNRVGVSQVLNRYTFASTLSHLRR 483
Query: 424 VHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
+ G + R+L WG +CP TP+G+ CGL+ +++ + SY S G+
Sbjct: 484 TNTPIGRDG-KLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLS----LMSYV-SVGS-- 535
Query: 484 DFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHL 541
I+ L G+ +L S P V ++G +GV P+ E + +
Sbjct: 536 ----PSAPIIEFLEEWGL-ETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLR 590
Query: 542 RRLKVSA-ASVIPD 554
RRL +SA S++ D
Sbjct: 591 RRLDISAEVSIVRD 604
Score = 63 (27.2 bits), Expect = 8.8e-77, Sum P(4) = 8.8e-77
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 1074 EIGGLPPARAPKKVT--CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
+I GL + KK + C +CQ V +PY + L EL +MNI
Sbjct: 1153 DICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNI 1200
Score = 41 (19.5 bits), Expect = 8.8e-77, Sum P(4) = 8.8e-77
Identities = 20/69 (28%), Positives = 26/69 (37%)
Query: 6 SADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVV 65
S+ FE L R + SFD + + E+ D L D Q+ A V
Sbjct: 22 SSFFEET-SLARQQLFSFDEFVQNTMQEIVDD--------DSTLTLDQYAQHTGAQGDVT 72
Query: 66 RE-RFNFGQ 73
R NFGQ
Sbjct: 73 RRYEINFGQ 81
>SGD|S000005677 [details] [associations]
symbol:RPB2 "RNA polymerase II second largest subunit B150"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005677 PANTHER:PTHR20856 GO:GO:0005739
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006366
GO:GO:0003899 EMBL:U55020 RefSeq:NP_014796.3 GeneID:854324
KEGG:sce:YOR153W KO:K08711 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:1I3Q
PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U
PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG
PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63
PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7
PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z
PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG
PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ
PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ
PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2
PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16
PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H
PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I
PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS
PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK
PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T
PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG
PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y
PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I
PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8
PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ
PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9
PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK
PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ
PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX
PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F
PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3
PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15
PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q
PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C
PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I
PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93
PDBsum:4BBR PDBsum:4BBS KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 OrthoDB:EOG45HW5D
EMBL:M15693 EMBL:Z75059 EMBL:AF527884 PIR:A25884 RefSeq:NP_014794.3
ProteinModelPortal:P08518 DIP:DIP-14N IntAct:P08518
MINT:MINT-654304 STRING:P08518 PaxDb:P08518 PeptideAtlas:P08518
PRIDE:P08518 EnsemblFungi:YOR151C GeneID:854322 KEGG:sce:YOR151C
CYGD:YOR151c EvolutionaryTrace:P08518 NextBio:976360
ArrayExpress:P08518 Genevestigator:P08518 GermOnline:YOR151C
Uniprot:P08518
Length = 1224
Score = 694 (249.4 bits), Expect = 5.6e-76, Sum P(3) = 5.6e-76
Identities = 173/457 (37%), Positives = 242/457 (52%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D L
Sbjct: 739 THCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYY 798
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+ T E P G NAIVA+ Y+GY+ ED+MI+N+SS+DRG+ +++
Sbjct: 799 PQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS 858
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDGL--PYV---GQMIHPGEPYCS 799
G + + +R + H +D DGL P V G+ + G+
Sbjct: 859 YMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPI 918
Query: 800 IYDKTTNSWRT--NSRKGSESVF--VDYVAVD---MKNSKNLPQKANIRFRHTRNPIIGD 852
D+ RT +S++ + + + VD + +++ + +R R T+ P IGD
Sbjct: 919 SPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGD 978
Query: 853 KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
KF+SRHGQKG + DMPF+ G+ PDLIINPHA PSRMT+A L+E + +K +L
Sbjct: 979 KFASRHGQKGTIGITYRREDMPFTA-EGIVPDLIINPHAIPSRMTVAHLIECLLSKVAAL 1037
Query: 913 HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
G DA+PF TD + V+ + ++LR G+ G EV+Y+G G +L
Sbjct: 1038 SGNEGDASPF------------TDIT---VEGISKLLREHGYQSRGFEVMYNGHTGKKLM 1082
Query: 973 CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHG 1032
+IF GP YYQRLRHMV DK R+ G M +TRQP FGEMERD ++AHG
Sbjct: 1083 AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHG 1142
Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCGSV-LTATFIHPQ 1068
AA L +RL SD +C +CG + + A H Q
Sbjct: 1143 AASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQ 1179
Score = 139 (54.0 bits), Expect = 5.6e-76, Sum P(3) = 5.6e-76
Identities = 71/297 (23%), Positives = 128/297 (43%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G+ P+ML+++ C+L A L LKE +MGGYFI+NG E+V ++ ++ ++V
Sbjct: 168 GRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKV----LIAQERSAGNIV 223
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQ---SSVTLKLYYLLNGSVR-LGFWLQGKEYLLPVG 187
+ + + A + + K S++ +KLY S R + L + +P+
Sbjct: 224 QVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIV 283
Query: 188 IVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQC 247
I+ +AL D EI H+ CYD + + P V + I QD R
Sbjct: 284 IIFRALGIIPDGEILEHI--CYDVNDWQMLEML-KPCVEDGFVI-----QD-----RETA 330
Query: 248 LQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLFSL 303
L IG + G++ E A+ +++ H+ + K L +M+ +L
Sbjct: 331 LDFIGRRGTAL--GIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLC 388
Query: 304 VDHTSVSDNPDSLQNQEILLPGHLITIYLK---EKL-EDWLRKGKKLIQDEIENNGK 356
D+ D + + L G L+ K +KL +D R ++ +++ + N K
Sbjct: 389 ALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMK 445
Score = 118 (46.6 bits), Expect = 9.0e-74, Sum P(3) = 9.0e-74
Identities = 45/211 (21%), Positives = 86/211 (40%)
Query: 261 GLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G++ E A+ +++ H+ + K L +M+ +L D+ D
Sbjct: 342 GIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHF 401
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
+ + L G L+ K + + + +Q +E + DF N+K + +K
Sbjct: 402 GKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVE---EAHDF----NMKLAIN---AK 451
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + ++ L TG Q + RAG + R + +S R + G +
Sbjct: 452 TITSGLKYALATGNWGEQKKA-MSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDG-KLA 509
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
R+L WG +CP TP+G+ CGL+ +++
Sbjct: 510 KPRQLHNTHWGLVCPAETPEGQACGLVKNLS 540
Score = 54 (24.1 bits), Expect = 5.6e-76, Sum P(3) = 5.6e-76
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C + + +PY + L EL AMNI
Sbjct: 1182 CKGCDNKIDIYQIHIPYAAKLLFQELMAMNI 1212
Score = 39 (18.8 bits), Expect = 1.7e-65, Sum P(3) = 1.7e-65
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAV---LSVLLDGRVVGVIPSSEI 534
S L+V + G S + +K+ P + + +++ R +G+IP EI
Sbjct: 252 STLQVKL-YGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEI 297
Score = 39 (18.8 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 20/76 (26%), Positives = 31/76 (40%)
Query: 628 THEEIHPTGM-LSVVAN-LTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL-KFRADQKLYH 684
T EE H M L++ A +T + + N + + A + Q L ++ L H
Sbjct: 435 TVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 494
Query: 685 LQTPQTPIVRTNTYTK 700
L+ TPI R K
Sbjct: 495 LRRTNTPIGRDGKLAK 510
>WB|WBGene00016140 [details] [associations]
symbol:rpb-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0016477 "cell
migration" evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:FO080680 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA EMBL:U10333 PIR:E88445
PIR:T43701 RefSeq:NP_498047.1 ProteinModelPortal:Q10578 SMR:Q10578
STRING:Q10578 PaxDb:Q10578 EnsemblMetazoa:C26E6.4.1
EnsemblMetazoa:C26E6.4.2 GeneID:175668 KEGG:cel:CELE_C26E6.4
CTD:175668 WormBase:C26E6.4 GeneTree:ENSGT00690000102234
HOGENOM:HOG000222962 InParanoid:Q10578 NextBio:889138
Uniprot:Q10578
Length = 1193
Score = 695 (249.7 bits), Expect = 1.6e-75, Sum P(3) = 1.6e-75
Identities = 181/487 (37%), Positives = 254/487 (52%)
Query: 598 IELIGPFEQ-VFMEIRCP-DGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+ELI E+ M P D GG + TH EIHP +L V A++ P+ DHNQSPR
Sbjct: 670 VELIDSMEEETSMIAMMPEDLRSGGYCDTH--THCEIHPAMILGVCASIIPFPDHNQSPR 727
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG R D + L PQ P+V T + +E P G NAIVA
Sbjct: 728 NTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVA 787
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK-- 773
+L+Y+GY+ ED++I+N S++DRG+ Y++ ++ N + ++L + K
Sbjct: 788 ILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYR---DNEANLDNANEELIEKPTREKCS 844
Query: 774 ----SLHSVIDSDGLPYVGQMIHP-----GEPYC--SIYDKTTNSWRTNSRKGSESVFV- 821
SL+ +D DG+ G + G+ I D S + ++ + S F+
Sbjct: 845 GMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDA-STFLR 903
Query: 822 --DYVAVD--MKNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
+ VD M + + K IR R R P IGDKF+SRHGQKG ++ DMPF+
Sbjct: 904 SSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFT 963
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
G+ PD+IINPHA PSRMTI L+E + K + G+ DATPF ++V
Sbjct: 964 A-EGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVN--------- 1013
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
V ++ +L G++ G EV+Y+G G +LT +IF GP YYQRL+HMV DK R
Sbjct: 1014 -----VQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSR 1068
Query: 997 STGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSD-YHVADVCSL 1055
+ G + + RQP FGEMERD ++HGA L +RL SD YHV VC+
Sbjct: 1069 ARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVY-VCNN 1127
Query: 1056 CGSVLTA 1062
CG ++ A
Sbjct: 1128 CGLIVVA 1134
Score = 357 (130.7 bits), Expect = 3.3e-37, Sum P(3) = 3.3e-37
Identities = 140/511 (27%), Positives = 220/511 (43%)
Query: 311 DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
D+ D + N+ + L G L+ + + L++ + Q I N D F L V
Sbjct: 389 DDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKN----DDFAL----DVC 440
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
K + I + L TG Q Q RAG + RL + +S R +
Sbjct: 441 VKTST--ITRGLTYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLSHLRRANSPIGR 497
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
G + R+L WG +CP TP+G+ GL+ ++ Y S G++ +
Sbjct: 498 EG-KLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISVGSLPE------ 545
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK----- 545
IL L M +L ++ S + ++G VG+ E ++++ L++L+
Sbjct: 546 PILEFLEEWSM-ENLEEVSPSAIADATKIFVNGAWVGI--HREPDQLMTTLKKLRRQMDI 602
Query: 546 -VSAASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----- 597
VS S++ D D E+ + G L L K R+I E +
Sbjct: 603 IVSEVSMVRDIRDREIR-IYTDAGRVCRPL-LIVENQKLALKKRHIDQLKEAADEANKYT 660
Query: 598 ---------IELIGPFEQ-VFMEIRCP-DGGDGGRRNAFPATHEEIHPTGMLSVVANLTP 646
+ELI E+ M P D GG + TH EIHP +L V A++ P
Sbjct: 661 WSDLVGGGVVELIDSMEEETSMIAMMPEDLRSGGYCDTH--THCEIHPAMILGVCASIIP 718
Query: 647 YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEY 706
+ DHNQSPRN YQ M KQ MG R D + L PQ P+V T + +E
Sbjct: 719 FPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNEL 778
Query: 707 PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLF 766
P G NAIVA+L+Y+GY+ ED++I+N S++DRG+ Y++ ++ N + ++L
Sbjct: 779 PAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYR---DNEANLDNANEELI 835
Query: 767 RRNKDAK------SLHSVIDSDGLPYVGQMI 791
+ K SL+ +D DG+ G +
Sbjct: 836 EKPTREKCSGMRHSLYDKLDEDGIISPGMRV 866
Score = 129 (50.5 bits), Expect = 1.6e-75, Sum P(3) = 1.6e-75
Identities = 73/335 (21%), Positives = 135/335 (40%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYL--DAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
M + R ++Y L D+ D+ + V ++ G+ PVML++ C L +
Sbjct: 116 MPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDR 175
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
L L E + GGYF++NG E+V +I ++ ++ S +D + Y K C
Sbjct: 176 DLTELNECPLDPGGYFVINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTECRSC 230
Query: 152 VRKD-QSSVTLKLYYLLNGS-----VRLGFWLQG-KEYL---LPVGIVLKALVDTNDLEI 201
+ + + T+ + L G +G + G Y+ +P+ IV +AL +D +I
Sbjct: 231 LENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDI 290
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVID 260
H+ YD P + E VK L E + + L IG +P +
Sbjct: 291 LGHII--YD---------FNDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGAKPGVT 337
Query: 261 GLQSESYYA-VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
Q Y + + + ++ V + K + +M+ +L D+ D + N+
Sbjct: 338 REQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNK 397
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN 354
+ L G L+ + + L++ + Q I N
Sbjct: 398 RLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKN 432
Score = 57 (25.1 bits), Expect = 1.6e-75, Sum P(3) = 1.6e-75
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C AC+ + V +PY + L EL +M+I
Sbjct: 1143 CKACRNKTQVSAVRIPYACKLLFQELMSMSI 1173
Score = 42 (19.8 bits), Expect = 2.0e-66, Sum P(4) = 2.0e-66
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 344 KKLIQDEIENNGKKFDFFNLANIKKVMEKNP-------SKQIGTSIETMLK 387
K L++ ++++ FD F N+++++E +P ++ +GT +E K
Sbjct: 44 KGLVRQQLDS----FDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENPAK 90
Score = 38 (18.4 bits), Expect = 2.0e-66, Sum P(4) = 2.0e-66
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 547 SAASVIPDDLEVGYVPLSLGGAY 569
SA + D + VG VP+ L +Y
Sbjct: 144 SATEKVYDKVFVGKVPVMLRSSY 166
>FB|FBgn0262955 [details] [associations]
symbol:RpII140 "RNA polymerase II 140kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS;NAS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS;NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:AE014297 GO:GO:0046872
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:X05709
EMBL:BT003265 EMBL:M62972 PIR:A27826 RefSeq:NP_476706.1
UniGene:Dm.6926 ProteinModelPortal:P08266 DIP:DIP-17498N
MINT:MINT-1578011 STRING:P08266 PaxDb:P08266
EnsemblMetazoa:FBtr0082892 GeneID:41721 KEGG:dme:Dmel_CG3180
CTD:41721 FlyBase:FBgn0262955 InParanoid:P08266 OrthoDB:EOG4G1JX8
PhylomeDB:P08266 ChiTaRS:RpII140 GenomeRNAi:41721 NextBio:825231
Bgee:P08266 GermOnline:CG3180 Uniprot:P08266
Length = 1176
Score = 684 (245.8 bits), Expect = 2.2e-74, Sum P(3) = 2.2e-74
Identities = 165/451 (36%), Positives = 239/451 (52%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP +L V A++ P+ DHNQSPRN YQ M KQ MG + R D + L
Sbjct: 696 THCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYY 755
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
P P+V T + E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++
Sbjct: 756 PMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRS 815
Query: 748 -ETIDLSDDGNKVDRGQKLFRRN-KDAKSLH-SVIDSDGLPYVGQMIHPGEPYCS---IY 801
+ + G++ + +K R + ++ H +D DG+ G + +
Sbjct: 816 YKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITL 875
Query: 802 DKTTNSWRTNSRKGSE---SVFV---DYVAVDMK----NSKNLPQKANIRFRHTRNPIIG 851
+ + +N+++ S+ S F+ + VD NS+ + IR R R P IG
Sbjct: 876 PENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGY-KFCKIRVRSVRIPQIG 934
Query: 852 DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
DKF+SRHGQKG C + DM F+ G+ PD+IINPHA PSRMTI L+E + K GS
Sbjct: 935 DKFASRHGQKGTCGIQYRQEDMAFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGS 993
Query: 912 LHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTEL 971
G+ DATPF ++V V ++ L+ G++ G EV+Y+G G ++
Sbjct: 994 NKGEIGDATPFNDAVN--------------VQKISTFLQEYGYHLRGNEVMYNGHTGRKI 1039
Query: 972 TCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAH 1031
++F+GP YYQRL+HMV DK R+ G + + RQP FGEMERD ++H
Sbjct: 1040 NAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISH 1099
Query: 1032 GAAYLLHDRLHTCSDYHVADVCSLCGSVLTA 1062
GAA L +RL SD + +C+ CG + A
Sbjct: 1100 GAAQFLRERLFEVSDPYRVHICNFCGLIAIA 1130
Score = 129 (50.5 bits), Expect = 2.2e-74, Sum P(3) = 2.2e-74
Identities = 76/344 (22%), Positives = 147/344 (42%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV-VRERFNF-GQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ PV + + F G+ P+ML++ C L
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 170 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKE------YL---LPVGIVLKALVDTNDLE 200
C+ + + TL + + GS + G+ Y+ +P+ IV +AL D +
Sbjct: 225 CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
I H+ +D+ P + E VK L E + + L IG +P
Sbjct: 285 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP-- 329
Query: 260 DGLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ + A+ +++ + H+ +D K L +M+ +L D+ D
Sbjct: 330 -GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDH 388
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
N+ + L G L+ + ++ +++ + Q I+ GK F+
Sbjct: 389 YGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDFN 431
Score = 120 (47.3 bits), Expect = 2.0e-73, Sum P(3) = 2.0e-73
Identities = 73/310 (23%), Positives = 128/310 (41%)
Query: 261 GLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ + A+ +++ + H+ +D K L +M+ +L D+ D
Sbjct: 330 GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY 389
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I+ GK F N++ ++ N
Sbjct: 390 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTNI-- 440
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 441 -ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 497
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG LCP TP+G GL+ ++ Y S G+ + IL L
Sbjct: 498 KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMA-----YISVGS------QPSPILEFL 546
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 547 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 603
Query: 551 VIPD--DLEV 558
+I D D E+
Sbjct: 604 MIRDIRDREI 613
Score = 58 (25.5 bits), Expect = 2.2e-74, Sum P(3) = 2.2e-74
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C+ + V +PY + L EL +MNI
Sbjct: 1139 CKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1169
Score = 39 (18.8 bits), Expect = 6.0e-65, Sum P(3) = 6.0e-65
Identities = 11/57 (19%), Positives = 30/57 (52%)
Query: 344 KKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQ 400
K L++ ++++ FD F ++++++E +P+ ++ E +G + T L+
Sbjct: 38 KGLVRQQLDS----FDEFIQMSVQRIVEDSPAIEL--QAEAQHTSGEVETPPRFSLK 88
>TAIR|locus:2095233 [details] [associations]
symbol:NRPD2A "nuclear RNA polymerase D2A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0031047
"gene silencing by RNA" evidence=IMP] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IDA;IPI] [GO:0005720 "nuclear
heterochromatin" evidence=IDA] [GO:0006306 "DNA methylation"
evidence=IMP;IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IDA;IPI] [GO:0030880 "RNA polymerase
complex" evidence=IPI] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0050776 "regulation of immune response"
evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050776 GO:GO:0006355 GO:GO:0050832
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 EMBL:AP000377
GO:GO:0006351 UniGene:At.37653 GO:GO:0030422 GO:GO:0006306
GO:GO:0003899 GO:GO:0000418 GO:GO:0000419 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 EMBL:AY862891 EMBL:AY935711 EMBL:AK176111
IPI:IPI00546801 RefSeq:NP_001189957.1 RefSeq:NP_189020.2
ProteinModelPortal:Q9LK40 SMR:Q9LK40 STRING:Q9LK40 PaxDb:Q9LK40
PRIDE:Q9LK40 EnsemblPlants:AT3G23780.1 EnsemblPlants:AT3G23780.2
GeneID:821960 KEGG:ath:AT3G23780 GeneFarm:4224 TAIR:At3g23780
InParanoid:Q9LK40 KO:K16252 OMA:CRICESA PhylomeDB:Q9LK40
ProtClustDB:CLSN2681572 Genevestigator:Q9LK40 Uniprot:Q9LK40
Length = 1172
Score = 655 (235.6 bits), Expect = 4.4e-74, Sum P(4) = 4.4e-74
Identities = 227/745 (30%), Positives = 343/745 (46%)
Query: 399 LQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGE 458
+++ +G R N L+ + R + + G + R P WG +C + TPDGE
Sbjct: 468 MERVSGVVANLGRANPLQTLIDLRRTRQQVLYTG-KVGDARYPHPSHWGRVCFLSTPDGE 526
Query: 459 PCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS 518
CGL+ +M+ V++ + S++ L GM L +
Sbjct: 527 NCGLVKNMSLLGLVST------------QSLESVVEKLFACGM-EELMDDTCTPLFGKHK 573
Query: 519 VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSP 578
VLL+G VG+ SE VA L+ + S +P ++E+ + +FT
Sbjct: 574 VLLNGDWVGLCADSE--SFVAELKSRR--RQSELPREMEI-----KRDKDDNEVRIFTDA 624
Query: 579 PKFVRP---VRNIS-LPSEESQNI---ELI--GPFEQVFMEIRCPDGGDGGRRNAF--PA 627
+ +RP V N+ L E+ L+ G E + +E G + P
Sbjct: 625 GRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGIKQLLKEPK 684
Query: 628 --THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM-AKQTMGFSVQALKFRADQKLYH 684
TH E+ + +L V + P+++H+ R +YQ Q +Q +GFS R D
Sbjct: 685 IYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQ 744
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG-Q 743
L PQ P+ +T + G NAIVAV + GY+ ED++++NK+S++RGM Q
Sbjct: 745 LFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQ 804
Query: 744 I--YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV--IDSDGLPYVGQMIHPGEPYCS 799
I Y+ E +D + D K + +L + K + V ++ DG P++G + G+
Sbjct: 805 IRSYKAE-VD-AKDSEKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGD---I 859
Query: 800 IYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNS-KNLPQKANIRFRHTRNPIIGDKFSS 856
+ + T S +S K +E V V + + KN A + R R+P +GDKFSS
Sbjct: 860 VIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNF---AAVSLRQVRSPCLGDKFSS 916
Query: 857 RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF 916
HGQKGV L + PF+ + G+ PD++INPHAFPSR T LLE+ +KG +
Sbjct: 917 MHGQKGVLGYLEEQQNFPFT-IQGIVPDIVINPHAFPSRQTPGQLLEAALSKG--IACPI 973
Query: 917 MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIF 976
A K T T S V E+ E L GF+ G E +Y+G G + IF
Sbjct: 974 QKEGSSAAYTKLTRH--ATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIF 1031
Query: 977 IGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYL 1036
+GP +YQRL HM DK + R+TG + +TRQP FGEMERD L+AHGA+
Sbjct: 1032 MGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASAN 1091
Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
LH+RL T SD +C C + A I + R+I R P C C +S
Sbjct: 1092 LHERLFTLSDSSQMHICRKCKTY--ANVIERTPSSGRKI------RGPY---CRVCVSSD 1140
Query: 1097 GMETVAMPYVFRYLAAELAAMNIKI 1121
+ V +PY + L EL +M I +
Sbjct: 1141 HVVRVYVPYGAKLLCQELFSMGITL 1165
Score = 128 (50.1 bits), Expect = 4.4e-74, Sum P(4) = 4.4e-74
Identities = 61/262 (23%), Positives = 108/262 (41%)
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG----EHFQPVIDGL-----QSESY-Y 268
A+G E + +I + D S+T L H+ E F+ + L Q +S +
Sbjct: 285 ALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAFRCGNNALTYVEQQIKSTKF 344
Query: 269 AVAETV---IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
AE+V + Y+F L K L +M++ L + +N DS +N+ I L G
Sbjct: 345 PPAESVDECLHLYLFPGLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAG 404
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
L+ ++ L RK + +Q + +G ++K + + I +
Sbjct: 405 ELLEREIRVHLAHARRKMTRAMQKHLSGDG---------DLKPIEHYLDASVITNGLSRA 455
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
TG + +++ +G R N L+ + R + + G + R P
Sbjct: 456 FSTGAWS-HPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTG-KVGDARYPHPSH 513
Query: 446 WGFLCPVHTPDGEPCGLLNHMT 467
WG +C + TPDGE CGL+ +M+
Sbjct: 514 WGRVCFLSTPDGENCGLVKNMS 535
Score = 74 (31.1 bits), Expect = 4.4e-74, Sum P(4) = 4.4e-74
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 53 VEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAA-EMGGYFILNG 111
VE + LD V ++ G PVM+K+ C + ++ K K + A + GGYF++ G
Sbjct: 159 VEKKILD----VKKQDILIGSIPVMVKSILC--KTSEKGKENCKKGDCAFDQGGYFVIKG 212
Query: 112 LERVF 116
E+VF
Sbjct: 213 AEKVF 217
Score = 55 (24.4 bits), Expect = 4.4e-74, Sum P(4) = 4.4e-74
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 3 RKKSADFEPLRELVRHHIESFDYMLDEGLSEMF 35
+K + F L+ H + S++Y ++ GL +F
Sbjct: 36 KKAATSFFDKYGLISHQLNSYNYFIEHGLQNVF 68
Score = 42 (19.8 bits), Expect = 3.9e-69, Sum P(3) = 3.9e-69
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 106 YFILNGLERVFRS 118
YFI +GL+ VF+S
Sbjct: 58 YFIEHGLQNVFQS 70
>ZFIN|ZDB-GENE-041008-1 [details] [associations]
symbol:polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-041008-1
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102234 EMBL:AL954718 EMBL:CABZ01048450
EMBL:CABZ01048451 IPI:IPI00944344 Ensembl:ENSDART00000124865
ArrayExpress:F1QXY8 Bgee:F1QXY8 Uniprot:F1QXY8
Length = 1117
Score = 648 (233.2 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 172/462 (37%), Positives = 239/462 (51%)
Query: 605 EQVFMEIRCPDG-GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
E+ M PD + G TH EIHP+ +L V A++ P+ DHNQSPRN YQ M
Sbjct: 670 EETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMG 729
Query: 664 KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
KQ MG + R D + L PQ P+V T + E P G N+IVA+ +YTGY+
Sbjct: 730 KQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYN 789
Query: 724 MEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDAK--SLHSVID 780
ED++I+N+S+VDRG Y++ S G ++ + +K R +++ +D
Sbjct: 790 QEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYDKLD 849
Query: 781 SDGL--PYV---GQMIHPGEPYCSIYDKTTNSWRTNSR--KGSESVFV---DYVAVD--M 828
DGL P V G+ + G+ ++ + TN R K S F+ + VD M
Sbjct: 850 DDGLIAPGVRVSGEDVIIGKTV-TLPENDDELDSTNRRYTKRDCSTFLRTSETGIVDQVM 908
Query: 829 KNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCS-QLWPDIDMPFSGVTGMRPDLI 886
K IR R R P IGDKF+SRHGQKG C Q ++ + + G+ PD+I
Sbjct: 909 VTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEVRVYI--IEGITPDII 966
Query: 887 INPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELG 946
INPHA PSRMT+ L+E + K + G+ DATPF ++V V ++
Sbjct: 967 INPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVN--------------VQKVS 1012
Query: 947 EMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITR 1006
+L G++ G EVLY+G G +LT +IF+GP YYQRL+HMV DK R+ G + + R
Sbjct: 1013 NLLSEYGYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNR 1072
Query: 1007 QPXXXXXXXXXXX--FGEMERDSLLAHGAAYLLHDRLHTCSD 1046
QP FGEMERD +AHGAA L +RL SD
Sbjct: 1073 QPMEGRSRRSDGGLRFGEMERDCQIAHGAAQFLKERLFEASD 1114
Score = 361 (132.1 bits), Expect = 4.9e-29, P = 4.9e-29
Identities = 149/549 (27%), Positives = 233/549 (42%)
Query: 261 GLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 329 GVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I+ GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDR-GKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q RAG + RL F +S R V+ G +
Sbjct: 439 IISDGLKYSLATGNWGDVKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ Y S G+ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA-----YISVGS------QPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRR---LKVSAASVI 552
M +L ++ + + ++G VG+ E + + LRR + VS S+I
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 604
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IEL 600
D E + G L K + R+I E N +E
Sbjct: 605 RDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEY 664
Query: 601 IGPFEQ-VFMEIRCPDG-GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
I E+ M PD + G TH EIHP+ +L V A++ P+ DHNQSPRN Y
Sbjct: 665 IDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 724
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
Q M KQ MG + R D + L PQ P+V T + E P G N+IVA+ +
Sbjct: 725 QSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIAS 784
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDAK--SL 775
YTGY+ ED++I+N+S+VDRG Y++ S G ++ + +K R ++
Sbjct: 785 YTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAI 844
Query: 776 HSVIDSDGL 784
+ +D DGL
Sbjct: 845 YDKLDDDGL 853
Score = 128 (50.1 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 75/344 (21%), Positives = 143/344 (41%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSP---VVRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSVRLGFWLQGKE------YL---LPVGIVLKALVDTNDLE 200
C+ + + T+ + + G + G+ Y+ +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
I H+ +D+ P + E VK L E + + L IG +P
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAKP-- 328
Query: 260 DGLQSESYYAVAETVIRDYIFVHL--ND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ +D K L +M+ +L D+ D
Sbjct: 329 -GVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 387
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
N+ + L G L+ + ++ L++ + Q I+ GK F+
Sbjct: 388 YGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDR-GKDFN 430
Score = 37 (18.1 bits), Expect = 4.3e-59, Sum P(2) = 4.3e-59
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 472 VASYYDSRGNIR 483
++SY+D +G +R
Sbjct: 30 ISSYFDEKGLVR 41
>WB|WBGene00017300 [details] [associations]
symbol:rpc-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0003677 GO:GO:0000003 GO:GO:0006351
GO:GO:0003899 EMBL:FO081001 HSSP:P08518 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH PIR:T16011 RefSeq:NP_498192.2 ProteinModelPortal:Q27492
STRING:Q27492 PaxDb:Q27492 EnsemblMetazoa:F09F7.3.1
EnsemblMetazoa:F09F7.3.2 GeneID:175767 KEGG:cel:CELE_F09F7.3
UCSC:F09F7.3.1 CTD:175767 WormBase:F09F7.3 InParanoid:Q27492
NextBio:889574 Uniprot:Q27492
Length = 1154
Score = 643 (231.4 bits), Expect = 4.4e-68, Sum P(2) = 4.4e-68
Identities = 261/975 (26%), Positives = 407/975 (41%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKI-ILAEVQDLS-L 241
+PV I+ KA+ +D +I + T ++EKY A L E + + + Q L+ +
Sbjct: 237 VPVSIIFKAMGVESDFDIVS--TIGHEEKYVS---AFAQTL-EESINAGVYTQQQALAYV 290
Query: 242 TTRLQCLQH--IGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN--DNNDKFNLLIF-- 295
T++++ + G + L + + + I H+ D N K +
Sbjct: 291 TSKVKARKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNSMI-THIACPDGNFKMKAIYLGL 349
Query: 296 MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNG 355
M ++L + D+ D N+ + L G L+++ ED ++ ++ I +N
Sbjct: 350 MTRRLIQTELGENGLDDRDFYGNKRLELAGSLLSLLF----EDVFKRFNSELK-RIADNA 404
Query: 356 KKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFL 415
+I K M ++ I +I + TG + +R G T RL+++
Sbjct: 405 LMKTMAAPLDIVKHMRQD---MITNTIVNAMSTGNWIIKRFR--MERLGVTQVLSRLSYI 459
Query: 416 RFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
+ ++ ++F R S R L P WG LCP TP+GE CGL+ ++ + +
Sbjct: 460 SALGMMTRIN--STFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITT 517
Query: 475 YYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKS--GPPAVLSVLLDGRVVGVIPSS 532
D + +LR+L+ G + L + S P + L+G ++G
Sbjct: 518 DSDEK-----------PVLRLLLNSG-VEDLHNVHFSHVNKPENTLIFLNGVLIGTAVDP 565
Query: 533 E-IEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAY---PGLYLFTSPPKFVRP-VR 586
E + K V LRR + + V + L V +S G P + + P + V+
Sbjct: 566 ERVVKAVRDLRRSGLLSEFVSVSRSLTNRSVFISSDGGRLCRPYIIVKNGTPMLTQAHVQ 625
Query: 587 NISLPSEESQNIELIGPFEQVFM-EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLT 645
+ ++ G E + + E+ GR TH EI P +L V A L
Sbjct: 626 ELKEGKMIFEDFVDDGIVEYLDVNEMNDALIAVYGREIGPETTHLEIEPFTLLGVCAGLI 685
Query: 646 PYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDE 705
PY HNQSPRN YQC M KQ MG + R D +Y L PQ P+V++ T ++
Sbjct: 686 PYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEK 745
Query: 706 YPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--G 762
P G N I+AV++Y+GYD+EDA++LNK+S+DRG +Y+ N+ DR G
Sbjct: 746 LPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTFDRLLG 805
Query: 763 QKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVF-- 820
L + H +D +G+ + G I P + + + + S +
Sbjct: 806 PALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESGPGASASANTIGI 865
Query: 821 ----VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW-PDIDMPF 875
VDY V + P A R T N H K + Q P++ F
Sbjct: 866 AGRQVDYKDVSITYKTPTPSYAE-RVLLTYNE------DEAHLFKVLLRQTRRPELGDKF 918
Query: 876 SGVTGMRP--DLIINPHAFPSR---MTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTN 930
S G + LI P M M++ GK M+ V
Sbjct: 919 SSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVVNGT 978
Query: 931 GDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
GT V ++ E L CG+NY G ++L SG+ G L+ I+ GP+YYQ+L+HMV
Sbjct: 979 YHYGTAFGGDQVKDVCEELAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVL 1038
Query: 991 DKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
DK R+ G +TRQP GEMERD L+A+GA+ LL +RL SD
Sbjct: 1039 DKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVSSDEFKV 1098
Query: 1051 DVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYL 1110
DVC+ CG IG K C C++SK M + +PY + L
Sbjct: 1099 DVCTGCGV----------------IGS--------KGWCQKCRSSKSMANIKIPYACKLL 1134
Query: 1111 AAELAAMNIKITLQL 1125
EL +MNI L L
Sbjct: 1135 FQELQSMNIVPRLDL 1149
Score = 129 (50.5 bits), Expect = 4.4e-68, Sum P(2) = 4.4e-68
Identities = 48/191 (25%), Positives = 89/191 (46%)
Query: 28 DEGLSEMFD-----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRR 82
+EGL+ D CR ++Y+ + D+E Y V ++ G+ P+ML++ +
Sbjct: 90 EEGLNMTHDKITPQECRLRDMTYSAPISVDIE--YTRGNQRVFKKDLIIGRMPIMLRSSK 147
Query: 83 CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGY 142
C L+ ++L ++E + GGYF++ G E+V IL ++ + + +E
Sbjct: 148 CILRDLAEEELARVQECPYDPGGYFVVKGSEKV----ILIQEQLSKNRIMVGRNSSKELQ 203
Query: 143 TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
+ + RK ++ VT+K SVR +PV I+ KA+ +D +I
Sbjct: 204 CE-VLSSTSERKSKTYVTMKKGKY---SVRHNQLTDD----VPVSIIFKAMGVESDFDIV 255
Query: 203 NHLTCCYDEKY 213
+ T ++EKY
Sbjct: 256 S--TIGHEEKY 264
Score = 56 (24.8 bits), Expect = 2.1e-60, Sum P(2) = 2.1e-60
Identities = 33/128 (25%), Positives = 54/128 (42%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDA--GSPVVR 66
F +R LV+ H+ SFD+ + E + + KI T + +YLD G P
Sbjct: 35 FLKVRGLVKQHLVSFDHFVQEEIRSIM--LSNQKI--TSDANPNFYLKYLDIRIGKPSSE 90
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
E N + + C L+ +S+ E Y G +RVF+ ++ +
Sbjct: 91 EGLNMTHDKIT--PQECRLRDMTYSAPISVDIE------Y--TRGNQRVFKKDLIIGR-M 139
Query: 127 PMSMVRSS 134
P+ M+RSS
Sbjct: 140 PI-MLRSS 146
>UNIPROTKB|I3LGN1 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU914657
Ensembl:ENSSSCT00000028672 OMA:MSYEGYN Uniprot:I3LGN1
Length = 425
Score = 579 (208.9 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 147/393 (37%), Positives = 202/393 (51%)
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
+Y L PQ P+V+T T ++ P G NA VAV++Y+GYD+EDA++LNK+S+DRG
Sbjct: 1 MYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGR 60
Query: 742 GQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC 798
+Y+ L N+ D+ G L + H ++D+DG+ G+ + +
Sbjct: 61 CLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQVLV 120
Query: 799 SIYDKT-TNSWRTNSRKGSESVFVDYVAVDMKNSKN-------LPQKANIRF------RH 844
+ T T S + + D V + K + + + A F R
Sbjct: 121 NKSMPTVTQIPLEGSNVPQQPQYKD-VPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQ 179
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
TR P IGDKFSSRHGQKGVC + P DMPF +G+ PD+I+NPH FPSRMT+ L+E
Sbjct: 180 TRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCD-SGICPDIIMNPHGFPSRMTVGKLIEL 238
Query: 905 VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
+A K G L G+F T F S K D + LV G+NY G + + S
Sbjct: 239 LAGKAGVLDGRFHYGTAFGGSKVK-------DVCEDLVRH--------GYNYLGKDYVTS 283
Query: 965 GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEME 1024
G+ G L I+ GPVYYQ+L+HMV DK R+ G +TRQP GEME
Sbjct: 284 GITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEME 343
Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
RD L+ +GA+ LL +RL SD DVC CG
Sbjct: 344 RDCLIGYGASMLLLERLMISSDAFEVDVCGQCG 376
Score = 68 (29.0 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
CH C++S + ++ +PY + L EL +MNI L+L
Sbjct: 384 CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 420
>UNIPROTKB|H7C0D9 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
Ensembl:ENST00000458012 Bgee:H7C0D9 Uniprot:H7C0D9
Length = 308
Score = 469 (170.2 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
Identities = 97/208 (46%), Positives = 131/208 (62%)
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E
Sbjct: 103 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 162
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 163 FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 221
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKAN-IRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+L
Sbjct: 222 FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 281
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSR 895
WP DMPF+ +GM PD++ NPH FPSR
Sbjct: 282 WPAEDMPFTE-SGMVPDILFNPHGFPSR 308
Score = 144 (55.7 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
Identities = 37/89 (41%), Positives = 50/89 (56%)
Query: 519 VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPGLYLFTS 577
VLLDG +VG + + LR KV IP +EV +P++ YPGL+LFT+
Sbjct: 20 VLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTT 79
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQ 606
P + VRPV+N++L EE LIG EQ
Sbjct: 80 PCRLVRPVQNLALGKEE-----LIGTMEQ 103
>UNIPROTKB|F1SPQ0 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 OMA:DMIMNPH EMBL:FP565199
Ensembl:ENSSSCT00000000178 Uniprot:F1SPQ0
Length = 902
Score = 466 (169.1 bits), Expect = 5.2e-49, Sum P(2) = 5.2e-49
Identities = 179/670 (26%), Positives = 293/670 (43%)
Query: 233 LAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKF 290
L E Q + T++Q L++IG Q + G ++ A ++ I H+ F
Sbjct: 266 LEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNF 325
Query: 291 NL-LIF---MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKL 346
I+ M++++ V D D N+ + L G L+++ ++ + + + KK
Sbjct: 326 RAKCIYTAVMVRRVILAQGDNKVDDR-DYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK- 383
Query: 347 IQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYT 406
I D++ + F ++ K M ++ QI + + TG + + R G T
Sbjct: 384 IADQVIPKQRAAQF----DVVKHMRQD---QITNGMVNAISTGNWSLKRFK--MDRQGVT 434
Query: 407 VQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNH 465
RL+++ + + + F R S R L P WG LCP TP+GE CGL+ +
Sbjct: 435 QVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 492
Query: 466 MTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRV 525
+ + + + ++ S + + +L G + S P V V L+G +
Sbjct: 493 LALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEEL--SYPN--------VFLVFLNGNI 542
Query: 526 VGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP- 584
+GVI + +K+V R ++ A I + +V +S +Y+ + + RP
Sbjct: 543 LGVI--RDHKKLVNTFRLMR--RAGYINE-----FVSISTNLTDRCVYISSDGGRLCRPY 593
Query: 585 -VRNISLPSEESQNIELIGP----FEQVFME--IRCPDGGDGGRRNAF--------PATH 629
+ P+ ++++E + FE E + D + N TH
Sbjct: 594 IIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTH 653
Query: 630 EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
EI P +L V A L PY HNQSPRN YQC M KQ MG + R D +Y L PQ
Sbjct: 654 LEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQ 713
Query: 690 TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
P+V+T T ++ P G NA VAV++Y+GYD+EDA++LNK+S+DRG +Y+
Sbjct: 714 KPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAK 773
Query: 750 IDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-T 805
L N+ D+ G L + H ++D+DG+ G+ + + + T T
Sbjct: 774 CTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVT 833
Query: 806 NSWRTNSRKGSESVFVDYVAVDMKNSKN-------LPQKANIRF------RHTRNPIIGD 852
S + + D V + K + + + A F R TR P IGD
Sbjct: 834 QIPLEGSNVPQQPQYKD-VPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGD 892
Query: 853 KFSSRHGQKG 862
KFSSRHGQKG
Sbjct: 893 KFSSRHGQKG 902
Score = 130 (50.8 bits), Expect = 5.2e-49, Sum P(2) = 5.2e-49
Identities = 41/167 (24%), Positives = 81/167 (48%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 99 CRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLN 156
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
E + GGYFI+ G+E+V +++ +Q +S R R+G +V +K +
Sbjct: 157 ECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIVEADRKGTVGASVTSSTHEKKSR 210
Query: 157 SSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
+++ +K +YL + ++ ++ +P+ I+ KA+ +D EI
Sbjct: 211 TNMAVKQGRFYLRHNTL-------SED--IPIVIIFKAMGVESDQEI 248
Score = 72 (30.4 bits), Expect = 6.5e-43, Sum P(2) = 6.5e-43
Identities = 32/126 (25%), Positives = 58/126 (46%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRER 68
F ++ LV+ HI+SF+Y ++ + ++ K++ M +++ + G P V E
Sbjct: 30 FLKVKGLVKQHIDSFNYFINVEIKKIMK--ANEKVTSDADPMWYLKYLNIYVGLPDVEES 87
Query: 69 FNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPM 128
FN + PV C L+ +++ E Y G +R+ R+ LP P+
Sbjct: 88 FNVTR-PV--SPHECRLRDMTYSAPITVDIE------Y--TRGSQRIIRNA-LPIGRMPI 135
Query: 129 SMVRSS 134
M+RSS
Sbjct: 136 -MLRSS 140
>TIGR_CMR|CHY_2318 [details] [associations]
symbol:CHY_2318 "DNA-directed RNA polymerase, beta
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 HOGENOM:HOG000218611
OMA:FMTWEGY RefSeq:YP_361127.1 ProteinModelPortal:Q3A9Q7
STRING:Q3A9Q7 PRIDE:Q3A9Q7 GeneID:3728817 KEGG:chy:CHY_2318
PATRIC:21277705 BioCyc:CHYD246194:GJCN-2317-MONOMER Uniprot:Q3A9Q7
Length = 1132
Score = 277 (102.6 bits), Expect = 2.1e-25, Sum P(4) = 2.1e-25
Identities = 105/381 (27%), Positives = 162/381 (42%)
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM---CHGQIYQTE 748
I+ T +G E G N +VA + + GY+ EDA+++++ V + H + Y+ +
Sbjct: 668 IIADGPSTDHG--ELALGKNVLVAYMPWEGYNYEDAILISEKLVKEDVFTSIHIEEYECD 725
Query: 749 TIDLSDDGNKVDR-----GQKLFRRNKDAKSLHSVIDSDGLP---YVGQMIHPGEPYCS- 799
D ++ R G+ + + D + + I ++ P VG++ GE +
Sbjct: 726 ARDTKLGPEEITRDIPNVGEDALK-DLDERGIIR-IGAEVRPGDILVGKVTPKGETELTA 783
Query: 800 -------IYDKTTNSWRTNSRK---GSESVFVDYVAVDMKNSKNLPQKANIRFR----HT 845
I+ + R S + G VD +N L N+ R
Sbjct: 784 EERLLRAIFGEKAREVRDTSLRVPHGESGKVVDVKVFSRENGDELSPGVNMLVRVYIAQK 843
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R +GDK + RHG KGV +++ P+ DMPF G ++++NP PSRM I +LE
Sbjct: 844 RKISVGDKMAGRHGNKGVVARILPEEDMPFLP-DGTPVEIVLNPLGVPSRMNIGQILECH 902
Query: 906 AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
G + ATP N T+E ++ E LR G G + G
Sbjct: 903 LGWAAKALGINV-ATPIFNGA--------TEE------DIFEALRKAGLPEDGKIEVRDG 947
Query: 966 VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMER 1025
G + +G VY +L H+V DK RSTG +T+QP FGEME
Sbjct: 948 RTGEPFDSRVTVGYVYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV 1007
Query: 1026 DSLLAHGAAYLLHDRLHTCSD 1046
+L A+GAAY L + L SD
Sbjct: 1008 WALEAYGAAYTLQEILTIKSD 1028
Score = 74 (31.1 bits), Expect = 2.1e-25, Sum P(4) = 2.1e-25
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
VR + +G +CP+ TP+G GL+ ++T+ RV +
Sbjct: 438 VRDVHHSHYGRMCPIETPEGPNIGLIGNLTTYARVNEF 475
Score = 73 (30.8 bits), Expect = 2.1e-25, Sum P(4) = 2.1e-25
Identities = 32/107 (29%), Positives = 48/107 (44%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVV---RER-FN 70
L+ +S+ + LDEGL E+F +TG L + YL V +ER F
Sbjct: 26 LIEIQKKSYQWFLDEGLREVFREISPIT-DFTGNLSLEFLDYYLGKPKYSVEECKERDFT 84
Query: 71 FGQFPVMLKTRRCHLQ-GADSQKLVSLKE-EAAEMGGYFILNGLERV 115
+ P+ +K R + + G ++ V L + G FI NG ERV
Sbjct: 85 YSA-PLRVKVRLLNKETGEIKEQEVFLGDFPLMTEKGTFIFNGAERV 130
Score = 53 (23.7 bits), Expect = 2.1e-25, Sum P(4) = 2.1e-25
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
++ P + SV +L P+ +H+ + R + M +Q +
Sbjct: 547 DVSPKQVFSVATSLIPFLEHDDANRALMGANMQRQAV 583
Score = 44 (20.5 bits), Expect = 1.6e-21, Sum P(3) = 1.6e-21
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 340 LRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
+RKG+++ +D+I +G D LA K V+
Sbjct: 657 VRKGERVEKDQIIADGPSTDHGELALGKNVL 687
Score = 41 (19.5 bits), Expect = 3.7e-22, Sum P(4) = 3.7e-22
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 10 EPLRELVRHHI-ESFDYMLD----EGLSEMFDHCRQAKISYTGKLMADVEFQY-LDAGSP 63
E +REL I + Y+L +G + DH ++ G+L+ + +F+ L
Sbjct: 306 EFIRELTNEDIIYTIRYLLGLMRGQGKVDDIDHLGNRRLRSVGELLQN-QFRIGLARMER 364
Query: 64 VVRER 68
VVRER
Sbjct: 365 VVRER 369
Score = 38 (18.4 bits), Expect = 7.0e-24, Sum P(4) = 7.0e-24
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 684 HLQTPQTPIVRTNT-YTKYGIDEYPTGTNAIVAVLA 718
++Q P++RT GI EY ++ V VLA
Sbjct: 577 NMQRQAVPLIRTEAPVVGTGI-EYKAAKDSGVVVLA 611
>TIGR_CMR|BA_0102 [details] [associations]
symbol:BA_0102 "DNA-directed RNA polymerase, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 RefSeq:NP_842670.1
RefSeq:YP_026388.1 RefSeq:YP_052605.1 ProteinModelPortal:Q81VT8
IntAct:Q81VT8 PRIDE:Q81VT8 DNASU:1086075
EnsemblBacteria:EBBACT00000010978 EnsemblBacteria:EBBACT00000018107
EnsemblBacteria:EBBACT00000023445 GeneID:1086075 GeneID:2820986
GeneID:2850888 KEGG:ban:BA_0102 KEGG:bar:GBAA_0102 KEGG:bat:BAS0102
HOGENOM:HOG000218611 OMA:FMTWEGY BioCyc:BANT260799:GJAJ-113-MONOMER
BioCyc:BANT261594:GJ7F-115-MONOMER Uniprot:Q81VT8
Length = 1177
Score = 277 (102.6 bits), Expect = 2.4e-25, Sum P(3) = 2.4e-25
Identities = 103/369 (27%), Positives = 160/369 (43%)
Query: 703 IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM---CHGQIYQTETIDLSDDGNKV 759
+ E G N +V + + GY+ EDA+I+++ V + H + Y++E D ++
Sbjct: 749 LGELALGRNVLVGFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEYESEARDTKLGPEEI 808
Query: 760 DR-----GQKLFRRNKDAKSLHSVIDS--DGLPYVGQMIHPGEPYCS--------IYDKT 804
R G+ R N D + + V DG VG++ G + I+ +
Sbjct: 809 TRDIPNVGEDALR-NLDERGIIRVGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEK 867
Query: 805 TNSWRTNSRK---GSESVFVDYVAVDMKNSKNLPQKANIRFR----HTRNPIIGDKFSSR 857
R S + G + +D + ++ LP N R R GDK + R
Sbjct: 868 AREVRDTSLRVPHGGGGIILDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGR 927
Query: 858 HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFM 917
HG KGV S++ P+ DMP+ G D+++NP PSRM I +LE G +
Sbjct: 928 HGNKGVISRILPEEDMPYLP-DGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHI 986
Query: 918 DATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFI 977
ATP + ++ + GT E + ++ +T +LY G G + +
Sbjct: 987 -ATPVFDGAREEDV-WGTIEEAGMANDA----KT---------ILYDGRTGEPFDNRVSV 1031
Query: 978 GPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLL 1037
G +Y +L HMV DK RSTG +T+QP FGEME +L A+GAAY L
Sbjct: 1032 GVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1091
Query: 1038 HDRLHTCSD 1046
+ L SD
Sbjct: 1092 QEILTVKSD 1100
Score = 82 (33.9 bits), Expect = 2.4e-25, Sum P(3) = 2.4e-25
Identities = 50/198 (25%), Positives = 84/198 (42%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVV-----R 66
L L+ S+ + LDEGL EMF + +TG L +EF G P +
Sbjct: 26 LPNLIEIQTSSYQWFLDEGLREMFQDISPIE-DFTGNL--SLEFIDYSLGEPKYSVDECK 82
Query: 67 ERFNFGQFPVMLKTRRCHLQ-GADSQKLVSLKE-EAAEMGGYFILNGLERVFRSVILPKQ 124
ER P+ +K R + + G ++ V + + G F++NG ERV S ++
Sbjct: 83 ERDVTYAAPLRVKVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSP 142
Query: 125 N-YPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL 183
+ Y V ++ + G+T + R + + + Y VR+ +
Sbjct: 143 SVYYSGKVD---KNGKRGFTATVIPNRGAWLEYETDAKDVVY-----VRID-----RTRK 189
Query: 184 LPVGIVLKALVDTNDLEI 201
LPV ++L+AL +D EI
Sbjct: 190 LPVTVLLRALGFGSDQEI 207
Score = 73 (30.8 bits), Expect = 2.4e-25, Sum P(3) = 2.4e-25
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
VR + +G +CP+ TP+G GL+N ++S +V +
Sbjct: 502 VRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEF 539
Score = 42 (19.8 bits), Expect = 3.1e-21, Sum P(3) = 3.1e-21
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 23 FDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQY-LDAGSPVVRERFN 70
F+ + G ++ DH ++ G+L+ + +F+ L VVRER +
Sbjct: 388 FNLLYKVGDTDDIDHLGNRRLRSVGELLQN-QFRIGLSRMERVVRERMS 435
Score = 39 (18.8 bits), Expect = 7.6e-22, Sum P(3) = 7.6e-22
Identities = 9/47 (19%), Positives = 26/47 (55%)
Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTP-IVRTNTYTKYG-IDEY 706
+ ++ GF V+ + + ++ ++TP+ P I N+ + + ++E+
Sbjct: 493 LTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEF 539
>TIGR_CMR|SO_0224 [details] [associations]
symbol:SO_0224 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:NP_715864.1 ProteinModelPortal:Q8EK74
PRIDE:Q8EK74 GeneID:1168107 KEGG:son:SO_0224 PATRIC:23520141
Uniprot:Q8EK74
Length = 1345
Score = 163 (62.4 bits), Expect = 2.0e-24, Sum P(7) = 2.0e-24
Identities = 38/103 (36%), Positives = 52/103 (50%)
Query: 944 ELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQ 1003
E+ +ML G G L+ G G E + +G +Y +L H+V DK RSTG+
Sbjct: 1197 EIKQMLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1256
Query: 1004 ITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
+T+QP FGEME +L A+GAAY L + L SD
Sbjct: 1257 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1299
Score = 130 (50.8 bits), Expect = 2.0e-24, Sum P(7) = 2.0e-24
Identities = 32/76 (42%), Positives = 42/76 (55%)
Query: 837 KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRM 896
K + + T P GDK + RHG KGV S++ P DMP+ G D+++NP PSRM
Sbjct: 1052 KVYLAVKRTIQP--GDKMAGRHGNKGVISKINPIEDMPYDE-QGNPVDIVLNPLGVPSRM 1108
Query: 897 TIAMLLE---SVAAKG 909
I +LE AAKG
Sbjct: 1109 NIGQVLEVHLGAAAKG 1124
Score = 90 (36.7 bits), Expect = 2.0e-24, Sum P(7) = 2.0e-24
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
VR + P +G LCP+ TP+G GL+N + S R SY
Sbjct: 548 VRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSY 585
Score = 77 (32.2 bits), Expect = 2.0e-24, Sum P(7) = 2.0e-24
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 597 NIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
NIE+ V +I C G+ A + ++ P ++SV A+L P+ +H+ + R
Sbjct: 621 NIEVDSEGRMVEEQIACRHKGESTFMRASDIQYMDVSPQQIISVAASLIPFLEHDDANRA 680
Query: 657 MYQCQMAKQTM 667
+ M +Q +
Sbjct: 681 LMGANMQRQAV 691
Score = 59 (25.8 bits), Expect = 2.0e-24, Sum P(7) = 2.0e-24
Identities = 28/144 (19%), Positives = 59/144 (40%)
Query: 691 PIVRTNTYT---KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
P+VR + + + G N +A + + GY+ ED++++++ I+
Sbjct: 777 PVVRGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDR-FTTIHIQ 835
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS 807
E ++ D K+ + +S S +D G+ Y+G + G+ +
Sbjct: 836 ELSCIARD-TKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGET 894
Query: 808 WRTNSRKGSESVFVDYVAVDMKNS 831
T K ++F + A D+K+S
Sbjct: 895 QLTPEEKLLRAIFGEK-ASDVKDS 917
Score = 46 (21.3 bits), Expect = 2.0e-24, Sum P(7) = 2.0e-24
Identities = 28/105 (26%), Positives = 47/105 (44%)
Query: 28 DEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFG---QFPVMLKTRR 82
+ GL F K S++G +++++ G PV V+E G P+ +K R
Sbjct: 46 ERGLEAAFRSVFPIK-SFSGN--SELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRM 102
Query: 83 C-HLQGADSQKLVSLKEEAAEMG--------GYFILNGLERVFRS 118
+ + A + + +KE+ MG G F++NG ERV S
Sbjct: 103 VLYDREAAAGTVKDIKEQEVYMGDIPLMTDNGTFVINGTERVIVS 147
Score = 39 (18.8 bits), Expect = 2.0e-24, Sum P(7) = 2.0e-24
Identities = 13/58 (22%), Positives = 28/58 (48%)
Query: 113 ERVFRSVILPKQNYPMSMV-RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNG 169
E +F+++ ++ Y +S V R F R D+ + ++D +V + ++ NG
Sbjct: 383 EALFQNLFFSEERYDLSKVGRMKFNRRLSIPDDEGSGVLS-KEDIVAVMKNIIHIRNG 439
>TIGR_CMR|SPO_3508 [details] [associations]
symbol:SPO_3508 "DNA-directed RNA polymerase, beta
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_168703.1 ProteinModelPortal:Q5LMQ5 PRIDE:Q5LMQ5
GeneID:3196296 KEGG:sil:SPO3508 PATRIC:23380485 Uniprot:Q5LMQ5
Length = 1378
Score = 164 (62.8 bits), Expect = 3.1e-22, Sum P(5) = 3.1e-22
Identities = 37/103 (35%), Positives = 52/103 (50%)
Query: 944 ELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQ 1003
++ + L GF+ G VL+ G G + + +G Y +L H+V DK RSTG
Sbjct: 1226 DVNDALTRAGFDTSGQSVLFDGRTGEQFARPVTVGIKYLLKLHHLVDDKIHARSTGPYSL 1285
Query: 1004 ITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
+T+QP FGEME +L A+GAAY L + L SD
Sbjct: 1286 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1328
Score = 130 (50.8 bits), Expect = 3.1e-22, Sum P(5) = 3.1e-22
Identities = 41/122 (33%), Positives = 59/122 (48%)
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV---AA 907
GDK + RHG KGV S++ P DMPF G D +NP PSRM + +LE+ AA
Sbjct: 1095 GDKMAGRHGNKGVISKVVPMEDMPFLA-DGTPVDFCLNPLGVPSRMNVGQILETHMGWAA 1153
Query: 908 KGGSL--------HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGV 959
+G L + + D TP +++K G+ E S +DE ++ G GV
Sbjct: 1154 RGLGLNVDEALQEYRRSGDLTPVRDAMKHAYGEDVYAEGISGMDE-DTLVEAAGNVTRGV 1212
Query: 960 EV 961
+
Sbjct: 1213 PI 1214
Score = 85 (35.0 bits), Expect = 3.1e-22, Sum P(5) = 3.1e-22
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
VR + P +G +CP+ TP+G GL+N + + RV Y
Sbjct: 567 VRDVHPTHYGRMCPIETPEGPNIGLINSLATFARVNKY 604
Score = 78 (32.5 bits), Expect = 3.1e-22, Sum P(5) = 3.1e-22
Identities = 25/112 (22%), Positives = 55/112 (49%)
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
Q + ++ T G E G N +VA + + GY+ ED++++++ + R I+
Sbjct: 795 QVSKGEVIADGPSTDMG--ELALGKNVVVAFMPWNGYNYEDSILISER-IARDDVFTSIH 851
Query: 746 QTETIDLSDDGNKVDRGQKLFRR--NKDAKSLHSVIDSDGLPYVGQMIHPGE 795
E +++ K+ +++ R N ++L + +D G+ Y+G + PG+
Sbjct: 852 -IEEFEVAARDTKLGP-EEITRDIPNVGEEALRN-LDEAGIVYIGAEVQPGD 900
Score = 54 (24.1 bits), Expect = 9.4e-11, Sum P(5) = 9.4e-11
Identities = 25/88 (28%), Positives = 36/88 (40%)
Query: 654 PRNMYQCQMAKQTMGFSVQALKFRADQKL--YHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
P M Q+ + MG++ + L D+ L Y TP VR YG D Y G +
Sbjct: 1136 PSRMNVGQILETHMGWAARGLGLNVDEALQEYRRSGDLTP-VRDAMKHAYGEDVYAEGIS 1194
Query: 712 AIVAVLAYTGYDMEDAMILNKSSVDRGM 739
G D ED ++ +V RG+
Sbjct: 1195 ---------GMD-EDTLVEAAGNVTRGV 1212
Score = 43 (20.2 bits), Expect = 3.1e-22, Sum P(5) = 3.1e-22
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 87 GADSQKLVSLKEEAAEMG--------GYFILNGLERVFRS 118
GA S K +KE+ MG G FI+NG ERV S
Sbjct: 116 GAKSVK--DIKEQDVFMGDMPLMTPNGTFIVNGTERVIVS 153
Score = 42 (19.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 4 KKSADFEPLRELVRHHIESFDYMLDEGLSEM 34
++S D P+R+ ++H Y EG+S M
Sbjct: 1168 RRSGDLTPVRDAMKHAYGEDVYA--EGISGM 1196
Score = 38 (18.4 bits), Expect = 3.1e-18, Sum P(5) = 3.1e-18
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 486 SKMRTSI-LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGR--VVGVIP 530
S T I R L+ VG S +++ GP + L G+ VV +P
Sbjct: 778 SNQNTCINQRPLVKVGQQVSKGEVIADGPSTDMGELALGKNVVVAFMP 825
>TIGR_CMR|CJE_0528 [details] [associations]
symbol:CJE_0528 "DNA-directed RNA polymerase, beta
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_178546.1 ProteinModelPortal:Q5HVY9
STRING:Q5HVY9 GeneID:3231289 KEGG:cjr:CJE0528 PATRIC:20042778
BioCyc:CJEJ195099:GJC0-543-MONOMER Uniprot:Q5HVY9
Length = 1378
Score = 150 (57.9 bits), Expect = 6.2e-22, Sum P(6) = 6.2e-22
Identities = 33/105 (31%), Positives = 53/105 (50%)
Query: 942 VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
++E ++ + + G LY G G ++ + +G +Y +L H+V +K RSTG
Sbjct: 1223 IEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMYMLKLHHLVDEKVHARSTGPY 1282
Query: 1002 DQITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
+T+QP FGEME +L A+GAA+ L + L SD
Sbjct: 1283 SLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREMLTIKSD 1327
Score = 135 (52.6 bits), Expect = 6.2e-22, Sum P(6) = 6.2e-22
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
+GDK + RHG KG+ S + P++DMP+ G D+ +NP PSRM I +LES
Sbjct: 1091 VGDKMAGRHGNKGIVSTIVPEVDMPYLP-NGKSVDIALNPLGVPSRMNIGQILES 1144
Score = 85 (35.0 bits), Expect = 6.2e-22, Sum P(6) = 6.2e-22
Identities = 31/126 (24%), Positives = 59/126 (46%)
Query: 677 RADQKLYHLQTP---QTPIVRTNTYTKYG--ID--EYPTGTNAIVAVLAYTGYDMEDAMI 729
R +Q ++Q P + IV+ G +D E G NA++A + + GY+ EDA++
Sbjct: 769 RTNQNTNYIQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIV 828
Query: 730 LNKSSV-DRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVG 788
+++ + + IY+ E I+ + + ++ K K+ H +D G+ +G
Sbjct: 829 VSERIIREDTFTSVHIYEKE-IEARELKDGIEEITKDIPNVKEEDVAH--LDESGIAKIG 885
Query: 789 QMIHPG 794
I PG
Sbjct: 886 THIKPG 891
Score = 81 (33.6 bits), Expect = 6.2e-22, Sum P(6) = 6.2e-22
Identities = 39/139 (28%), Positives = 59/139 (42%)
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
E L + L G +Q I + KF N A++ KVM P I M+ T +
Sbjct: 471 ELLANELHLGLAKMQKAIRD---KFTSLN-ADLDKVM---PYDLINPK---MITTTIIEF 520
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
TG L Q T + R +S A+ G VR + +G +CPV
Sbjct: 521 FTGGQLSQFMDQTNPLSEVTHKRRLS---ALGEGGLVKERAGFEVRDVHATHYGRICPVE 577
Query: 454 TPDGEPCGLLNHMTSTCRV 472
TP+G+ GL+N +++ +V
Sbjct: 578 TPEGQNIGLINTLSTYAKV 596
Score = 47 (21.6 bits), Expect = 6.2e-22, Sum P(6) = 6.2e-22
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 635 TGML-SVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
+GM+ V A+L P+ +H+ + R + M +Q +
Sbjct: 672 SGMVVGVAASLIPFLEHDDANRALMGSNMQRQAV 705
Score = 42 (19.8 bits), Expect = 6.2e-22, Sum P(6) = 6.2e-22
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 110 NGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS-SVTLKL 163
+G+E+VF+S I P + P + + + G K + C+ + + SV LK+
Sbjct: 48 SGIEKVFKS-IFPIHD-PQNRLSLEYVSSEIG-KPKYTIRECMERGLTYSVNLKM 99
Score = 39 (18.8 bits), Expect = 1.2e-21, Sum P(6) = 1.2e-21
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 107 FILNGLERV 115
FI+NG+ERV
Sbjct: 140 FIINGVERV 148
>UNIPROTKB|P60281 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:246196 "Mycobacterium smegmatis str. MC2 155" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01321 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 InterPro:IPR019462
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF10385 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:CP000480 EMBL:CP001663 GenomeReviews:CP000480_GR GO:GO:0006351
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
HOGENOM:HOG000218611 OMA:FMTWEGY EMBL:AJ605718
RefSeq:YP_006566096.1 RefSeq:YP_885753.1 ProteinModelPortal:P60281
IntAct:P60281 STRING:P60281 EnsemblBacteria:EBMYCT00000043175
GeneID:13429143 GeneID:4535217 KEGG:msm:MSMEG_1367 PATRIC:18075189
BioCyc:MSME246196:GJ4Y-1367-MONOMER Uniprot:P60281
Length = 1169
Score = 145 (56.1 bits), Expect = 3.8e-21, Sum P(7) = 3.8e-21
Identities = 35/95 (36%), Positives = 46/95 (48%)
Query: 958 GVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXX 1017
G L+ G G + +G +Y +L H+V DK RSTG IT+QP
Sbjct: 997 GKSTLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGG 1056
Query: 1018 XXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
FGEME ++ A+GAAY L + L SD V V
Sbjct: 1057 QRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRV 1091
Score = 122 (48.0 bits), Expect = 3.8e-21, Sum P(7) = 3.8e-21
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
GDK + RHG KGV ++ P DMPF G D+I+N H P RM I +LE+
Sbjct: 873 GDKLAGRHGNKGVIGKILPVEDMPFLP-DGTPVDIILNTHGVPRRMNIGQILET 925
Score = 74 (31.1 bits), Expect = 3.8e-21, Sum P(7) = 3.8e-21
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV 472
AGL VR + P +G +CP+ TP+G GL+ ++ RV
Sbjct: 459 AGLE---VRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARV 497
Score = 68 (29.0 bits), Expect = 3.8e-21, Sum P(7) = 3.8e-21
Identities = 21/92 (22%), Positives = 44/92 (47%)
Query: 705 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQK 764
E G N +VA++ + G++ EDA+IL+ V+ + + ID D K+ ++
Sbjct: 703 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARD--TKLG-AEE 759
Query: 765 LFRRNKDAKS-LHSVIDSDGLPYVGQMIHPGE 795
+ R + + + +D G+ +G + G+
Sbjct: 760 ITRDIPNVSDEVLADLDERGIVRIGAEVRDGD 791
Score = 63 (27.2 bits), Expect = 3.8e-21, Sum P(7) = 3.8e-21
Identities = 28/121 (23%), Positives = 47/121 (38%)
Query: 7 ADFEPLRELVRHHIESF-DYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVV 65
A+ P+ + SF D DE + D C+ ++Y L EF + G +
Sbjct: 82 AELSPIEDFSGSMSLSFSDPRFDE-VKASVDECKDKDMTYAAPLFVTAEFINNNTGE-IK 139
Query: 66 RERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYF---ILNGLERVFRSV-IL 121
+ G FP+M + + G + V + + G YF I E+ SV ++
Sbjct: 140 SQTVFMGDFPMMTEKGTFIINGTER---VVVSQLVRSPGVYFDETIDKSTEKTLHSVKVI 196
Query: 122 P 122
P
Sbjct: 197 P 197
Score = 58 (25.5 bits), Expect = 4.0e-12, Sum P(6) = 4.0e-12
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
++ +++ DE P G N +V V + D L ++G+ G+I E +
Sbjct: 838 VIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVI-GKILPVEDMP 896
Query: 752 LSDDGNKVD 760
DG VD
Sbjct: 897 FLPDGTPVD 905
Score = 57 (25.1 bits), Expect = 3.8e-21, Sum P(7) = 3.8e-21
Identities = 15/66 (22%), Positives = 32/66 (48%)
Query: 602 GPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
G F + + +R GG+ +A + ++ P M+SV + P+ +H+ + R +
Sbjct: 543 GRFTEDRVMVR-KKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 601
Query: 662 MAKQTM 667
M +Q +
Sbjct: 602 MQRQAV 607
Score = 40 (19.1 bits), Expect = 7.0e-14, Sum P(5) = 7.0e-14
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 616 GGDGGRRNAFPATHEEIHPTGMLS-VVANLTPYSDHNQS 653
G D R+ A E +P G L V+A L+P D + S
Sbjct: 57 GSDRWRQAAIDRGEE--NPVGGLEEVLAELSPIEDFSGS 93
Score = 40 (19.1 bits), Expect = 2.2e-10, Sum P(6) = 2.2e-10
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 728 MILNKSSVDRGMCHGQIYQTETIDLSDDGNKVD 760
+ILN V R M GQI +T ++ G +D
Sbjct: 906 IILNTHGVPRRMNIGQILETHLGWVAKAGWNID 938
Score = 38 (18.4 bits), Expect = 3.8e-21, Sum P(7) = 3.8e-21
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1103 MPYVFRYLAAELAAMNIKITLQLGDGA 1129
+P F+ L EL ++ + + + DGA
Sbjct: 1108 IPESFKVLLKELQSLCLNVEVLSSDGA 1134
>UNIPROTKB|P0A680 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0046677 GO:GO:0006351
EMBL:BX842574 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY EMBL:L27989 EMBL:U12205 EMBL:L05910 EMBL:AF143771
EMBL:AF146567 EMBL:AF147030 EMBL:AF147031 EMBL:AF147033
EMBL:AF147034 EMBL:S71246 PIR:F70535 RefSeq:NP_215181.1
RefSeq:NP_335107.1 RefSeq:YP_006514009.1 ProteinModelPortal:P0A680
SMR:P0A680 IntAct:P0A680 PRIDE:P0A680
EnsemblBacteria:EBMYCT00000001730 EnsemblBacteria:EBMYCT00000071499
GeneID:13318554 GeneID:888164 GeneID:925979 KEGG:mtc:MT0695
KEGG:mtu:Rv0667 KEGG:mtv:RVBD_0667 PATRIC:18123249
TubercuList:Rv0667 BindingDB:P0A680 ChEMBL:CHEMBL2006
Uniprot:P0A680
Length = 1178
Score = 147 (56.8 bits), Expect = 7.7e-21, Sum P(7) = 7.7e-21
Identities = 35/95 (36%), Positives = 47/95 (49%)
Query: 958 GVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXX 1017
G +L+ G G + +G +Y +L H+V DK RSTG IT+QP
Sbjct: 1006 GKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGG 1065
Query: 1018 XXFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
FGEME ++ A+GAAY L + L SD V V
Sbjct: 1066 QRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRV 1100
Score = 124 (48.7 bits), Expect = 7.7e-21, Sum P(7) = 7.7e-21
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
GDK + RHG KGV ++ P DMPF G D+I+N H P RM I +LE+
Sbjct: 882 GDKLAGRHGNKGVIGKILPVEDMPFLA-DGTPVDIILNTHGVPRRMNIGQILET 934
Score = 74 (31.1 bits), Expect = 7.7e-21, Sum P(7) = 7.7e-21
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV 472
AGL VR + P +G +CP+ TP+G GL+ ++ RV
Sbjct: 468 AGLE---VRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARV 506
Score = 68 (29.0 bits), Expect = 7.7e-21, Sum P(7) = 7.7e-21
Identities = 21/92 (22%), Positives = 45/92 (48%)
Query: 705 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQK 764
E G N +VA++ + G++ EDA+IL+ V+ + + ID D K+ ++
Sbjct: 712 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARD--TKLG-AEE 768
Query: 765 LFRRNKD-AKSLHSVIDSDGLPYVGQMIHPGE 795
+ R + + + + +D G+ +G + G+
Sbjct: 769 ITRDIPNISDEVLADLDERGIVRIGAEVRDGD 800
Score = 60 (26.2 bits), Expect = 7.7e-21, Sum P(7) = 7.7e-21
Identities = 23/62 (37%), Positives = 31/62 (50%)
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTD-KAVVIRCVRKD 155
+E AAE G + GLE V + P +++ SM SF D R + D KA V C KD
Sbjct: 71 RESAAERGDVNPVGGLEEVLYE-LSPIEDFSGSM-SLSFSDPR--FDDVKAPVDECKDKD 126
Query: 156 QS 157
+
Sbjct: 127 MT 128
Score = 57 (25.1 bits), Expect = 1.5e-11, Sum P(6) = 1.5e-11
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
++ +++ DE P G N +V V + D L ++G+ G+I E +
Sbjct: 847 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVI-GKILPVEDMP 905
Query: 752 LSDDGNKVD 760
DG VD
Sbjct: 906 FLADGTPVD 914
Score = 53 (23.7 bits), Expect = 7.7e-21, Sum P(7) = 7.7e-21
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
++ P M+SV + P+ +H+ + R + M +Q +
Sbjct: 580 DVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 616
Score = 53 (23.7 bits), Expect = 3.7e-20, Sum P(7) = 3.7e-20
Identities = 20/93 (21%), Positives = 37/93 (39%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
D C+ ++Y L EF + G + + G FP+M + + G + V
Sbjct: 120 DECKDKDMTYAAPLFVTAEFINNNTGE-IKSQTVFMGDFPMMTEKGTFIINGTER---VV 175
Query: 96 LKEEAAEMGGYF---ILNGLERVFRSV-ILPKQ 124
+ + G YF I ++ SV ++P +
Sbjct: 176 VSQLVRSPGVYFDETIDKSTDKTLHSVKVIPSR 208
Score = 46 (21.3 bits), Expect = 1.8e-10, Sum P(6) = 1.8e-10
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 728 MILNKSSVDRGMCHGQIYQTETIDLSDDGNKVD 760
+ILN V R M GQI +T + G KVD
Sbjct: 915 IILNTHGVPRRMNIGQILETHLGWCAHSGWKVD 947
Score = 40 (19.1 bits), Expect = 1.4e-19, Sum P(7) = 1.4e-19
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 526 VGVIPSSEIEKVVAHLRRLKVSAASVIP 553
V +PSSE++ + R++ A ++IP
Sbjct: 568 VEYVPSSEVDYMDVSPRQMVSVATAMIP 595
Score = 38 (18.4 bits), Expect = 7.7e-21, Sum P(7) = 7.7e-21
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1103 MPYVFRYLAAELAAMNIKITLQLGDGA 1129
+P F+ L EL ++ + + + DGA
Sbjct: 1117 IPESFKVLLKELQSLCLNVEVLSSDGA 1143
Score = 37 (18.1 bits), Expect = 3.0e-17, Sum P(7) = 3.0e-17
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 236 VQDLSLTTRLQCLQHIGEHFQPVIDGLQS-ESYYAVAE 272
+ LS+ R+ I ++ V+DG+ S E Y A+
Sbjct: 497 IGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTAD 534
>TIGR_CMR|ECH_0952 [details] [associations]
symbol:ECH_0952 "DNA-directed RNA polymerase, beta
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
EMBL:AF389473 RefSeq:YP_507740.1 ProteinModelPortal:Q8KWX2
STRING:Q8KWX2 PRIDE:Q8KWX2 GeneID:3927386 KEGG:ech:ECH_0952
PATRIC:20577286 BioCyc:ECHA205920:GJNR-955-MONOMER Uniprot:Q8KWX2
Length = 1380
Score = 156 (60.0 bits), Expect = 1.1e-20, Sum P(5) = 1.1e-20
Identities = 35/103 (33%), Positives = 51/103 (49%)
Query: 944 ELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQ 1003
++ +LR + G LY G G + ++ +G +Y +L H+V DK RS G
Sbjct: 1222 QISNLLRLADLDVSGQVDLYDGRIGEKFDRKVTVGYIYMLKLHHLVDDKIHARSVGPYGL 1281
Query: 1004 ITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
+T+QP FGEME +L A+GAAY L + L SD
Sbjct: 1282 VTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1324
Score = 122 (48.0 bits), Expect = 1.1e-20, Sum P(5) = 1.1e-20
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 837 KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRM 896
K + +H P GDK + RHG KGV S++ P DMP+ G D+I+N PSRM
Sbjct: 1080 KVFVAVKHNLQP--GDKMAGRHGNKGVISRIVPVEDMPYLE-DGTPVDIILNSLGVPSRM 1136
Query: 897 TIAMLLES 904
+ +LE+
Sbjct: 1137 NVGQILET 1144
Score = 74 (31.1 bits), Expect = 1.1e-20, Sum P(5) = 1.1e-20
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV 472
VR + P +G +CP+ TP+G+ GL++ + R+
Sbjct: 571 VRDVHPTHYGRICPIETPEGQNIGLISSLAIYARI 605
Score = 73 (30.8 bits), Expect = 1.1e-20, Sum P(5) = 1.1e-20
Identities = 30/120 (25%), Positives = 55/120 (45%)
Query: 689 QTPIVRTNTYTKYG--------ID--EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
Q P+V+ Y K ID E G N +VA +++ GY+ ED+++++ V +
Sbjct: 790 QRPLVKPGDYVKANDVIADGSAIDQGELALGKNVLVAFMSWQGYNFEDSIVISSEVVKKD 849
Query: 739 M---CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE 795
+ H + ++ D + K+ R N+D+ S H +D G+ VG + G+
Sbjct: 850 VFTSIHIEEFECVVRDTTLGPEKIMRSVPDI--NEDSLS-H--LDDVGIVNVGAEVSAGD 904
Score = 60 (26.2 bits), Expect = 1.1e-20, Sum P(5) = 1.1e-20
Identities = 36/129 (27%), Positives = 58/129 (44%)
Query: 105 GYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLY 164
G FI+NG+ERV ++ P S D+ + Y+ ++ L
Sbjct: 157 GTFIINGIERV---IVSQMHRSPGVFFDS---DKGKTYSSGKLIYSARIIPYRGSWLDFE 210
Query: 165 YLLNGSVRLGFWLQGKEYLLPVGIVLKAL-VDTNDLEIFNHLTCCYDE-KY-KKEKGAVG 221
+ + L F + K L PV ++L+AL + ND+ L YD+ +Y K EKG V
Sbjct: 211 FDIKDI--LYFRIDRKRKL-PVSLLLRALGLSNNDI-----LDTFYDKIRYVKSEKGWV- 261
Query: 222 SPLVSERVK 230
P V++R +
Sbjct: 262 VPFVADRFR 270
Score = 48 (22.0 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 282 HLNDNNDKFNLLIFMLQK-LFSLVDHTSVSDNPDSLQNQEILL 323
H+ DN D+ L + L+ L+ + D + DN S+ ++++L+
Sbjct: 1159 HILDNLDE--LTVSHLRNFLYQVYDGQDLKDNIQSMSDEDLLV 1199
Score = 46 (21.3 bits), Expect = 6.8e-18, Sum P(5) = 6.8e-18
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 575 FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG-RRNAFPATHEEIH 633
F +P +++ S+ SQ ++ P +V + R G GG R ++H
Sbjct: 516 FVNPKVLATVLKDFFSSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVH 575
Query: 634 PT 635
PT
Sbjct: 576 PT 577
>TIGR_CMR|NSE_0678 [details] [associations]
symbol:NSE_0678 "DNA-directed RNA polymerase, beta
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_506556.1 ProteinModelPortal:Q2GD90
STRING:Q2GD90 GeneID:3931355 KEGG:nse:NSE_0678 PATRIC:22681375
BioCyc:NSEN222891:GHFU-692-MONOMER Uniprot:Q2GD90
Length = 1358
Score = 167 (63.8 bits), Expect = 1.4e-20, Sum P(5) = 1.4e-20
Identities = 39/104 (37%), Positives = 55/104 (52%)
Query: 943 DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMD 1002
DE+ +L G + G EVLY GV G + ++ +G Y +L H+V+DK RS G+
Sbjct: 1192 DEIERLLVLAGKDPSGQEVLYDGVTGEKFDRKVTVGCKYMLKLHHLVNDKIHARSIGSYS 1251
Query: 1003 QITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
IT+QP FGEME +L A+GA + L + L SD
Sbjct: 1252 LITQQPLGGKSHFGGQRFGEMECWALQAYGATFALQEMLTIKSD 1295
Score = 141 (54.7 bits), Expect = 1.4e-20, Sum P(5) = 1.4e-20
Identities = 30/68 (44%), Positives = 40/68 (58%)
Query: 837 KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRM 896
K + +HT P GDK S RHG KGV S++ P DMP+ G D+I+NP PSRM
Sbjct: 1053 KVFVAVKHTLQP--GDKMSGRHGNKGVISRIVPAEDMPYLA-DGTPVDIILNPLGVPSRM 1109
Query: 897 TIAMLLES 904
+ +LE+
Sbjct: 1110 NVGQILET 1117
Score = 72 (30.4 bits), Expect = 1.4e-20, Sum P(5) = 1.4e-20
Identities = 30/129 (23%), Positives = 60/129 (46%)
Query: 705 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQK 764
E G N +VA L++ GY+ ED+++++ S+V R ++ E + ++ G +
Sbjct: 785 ELALGRNLVVAFLSWRGYNFEDSVVIS-SNVVRDDLFTSVH-LEGFECVVRDTRL--GPE 840
Query: 765 LFRRNKD--AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVD 822
R+ A+ +D G+ VG + G+ ++S T K ++F +
Sbjct: 841 EITRDVSGVAEEFLHCLDEFGIACVGANVEAGDVLVGKVTPKSSSPVTPEEKLLRAIFGE 900
Query: 823 YVAVDMKNS 831
A+D+K+S
Sbjct: 901 K-AIDVKDS 908
Score = 60 (26.2 bits), Expect = 1.4e-20, Sum P(5) = 1.4e-20
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
VR + +G +C TP+G GL+N + ++ Y
Sbjct: 543 VRDVHTTHYGRICATETPEGATIGLINSLAIYAKINKY 580
Score = 43 (20.2 bits), Expect = 1.4e-20, Sum P(5) = 1.4e-20
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 105 GYFILNGLERV 115
G FI+NG+ERV
Sbjct: 134 GTFIINGVERV 144
>TIGR_CMR|CBU_0231 [details] [associations]
symbol:CBU_0231 "DNA-directed RNA polymerase, beta
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CP001019 EMBL:U86688 GenomeReviews:CP001019_GR eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_002304193.1 ProteinModelPortal:B6J270 STRING:B6J270
PRIDE:B6J270 GeneID:7014190 KEGG:cbg:CbuG_1774 PATRIC:17914647
OMA:HANEEIT Uniprot:B6J270
Length = 1375
Score = 161 (61.7 bits), Expect = 3.2e-20, Sum P(5) = 3.2e-20
Identities = 36/104 (34%), Positives = 53/104 (50%)
Query: 943 DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMD 1002
+E+ ++L+ G LY G G + + +G +Y +L H+V DK RSTG+
Sbjct: 1226 EEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYMLKLNHLVDDKMHARSTGSYS 1285
Query: 1003 QITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
+T+QP FGEME +L A+GAAY L + L SD
Sbjct: 1286 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1329
Score = 131 (51.2 bits), Expect = 3.2e-20, Sum P(5) = 3.2e-20
Identities = 33/83 (39%), Positives = 47/83 (56%)
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV---AA 907
GDK + RHG KGV S + P DMP+ G D+++NP PSRM I +LE+ AA
Sbjct: 1098 GDKMAGRHGNKGVISTIVPIEDMPYLE-DGTPVDIVLNPLGVPSRMNIGQVLETHLGWAA 1156
Query: 908 KG-GSLHGKFMDATPFANSVKKT 929
KG G G+ ++ A ++K+
Sbjct: 1157 KGLGKKIGEMIEKGADAKELRKS 1179
Score = 68 (29.0 bits), Expect = 3.2e-20, Sum P(5) = 3.2e-20
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
VR + +G +CP+ TP+G GL+N + R Y
Sbjct: 568 VRDVHVTHYGRVCPIETPEGPNIGLINSLAVFARANEY 605
Score = 66 (28.3 bits), Expect = 3.2e-20, Sum P(5) = 3.2e-20
Identities = 20/93 (21%), Positives = 45/93 (48%)
Query: 703 IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRG 762
I E G N +VA + + GY+ ED++++++ V+ I+ E ++ D K+
Sbjct: 813 IGELALGQNLLVAFMPWNGYNFEDSILISERLVEEDR-FTTIHIQEFTCVARD-TKLGPE 870
Query: 763 QKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE 795
+ +S + +D G+ ++G ++ G+
Sbjct: 871 EITSDIPNVGESALAKLDESGIVHIGAEVNAGD 903
Score = 54 (24.1 bits), Expect = 3.2e-20, Sum P(5) = 3.2e-20
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
++ P ++SV A L P+ +H+ + R + M +Q +
Sbjct: 675 DVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAV 711
>TIGR_CMR|APH_1024 [details] [associations]
symbol:APH_1024 "DNA-directed RNA polymerase, beta
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 RefSeq:YP_505583.1 ProteinModelPortal:Q2GJ68
STRING:Q2GJ68 PRIDE:Q2GJ68 GeneID:3930425 KEGG:aph:APH_1024
PATRIC:20950798 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
BioCyc:APHA212042:GHPM-1031-MONOMER Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 Uniprot:Q2GJ68
Length = 1383
Score = 147 (56.8 bits), Expect = 6.2e-20, Sum P(6) = 6.2e-20
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 944 ELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQ 1003
++ +L + G LY G G + ++ +G +Y +L H+V DK RS G
Sbjct: 1226 QISRLLELADVDPSGQVDLYDGRSGQKFDRKVTVGYIYMLKLHHLVDDKIHARSVGPYGL 1285
Query: 1004 ITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
+T+QP FGEME +L A+GAAY L + L SD
Sbjct: 1286 VTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1328
Score = 121 (47.7 bits), Expect = 6.2e-20, Sum P(6) = 6.2e-20
Identities = 32/87 (36%), Positives = 44/87 (50%)
Query: 837 KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRM 896
K + +H P GDK + RHG KGV S++ P DMP G D+I+N PSRM
Sbjct: 1082 KVFVAVKHNLQP--GDKMAGRHGNKGVISRIVPVEDMPHLE-DGTPVDIILNSLGVPSRM 1138
Query: 897 TIAMLLES----VAAKGGSLHGKFMDA 919
I +LE+ A G G+ +D+
Sbjct: 1139 NIGQILETHLGWAAVNLGHRVGRMLDS 1165
Score = 76 (31.8 bits), Expect = 6.2e-20, Sum P(6) = 6.2e-20
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
VR + P +G +CP+ TP+G+ GL++ + ++ Y
Sbjct: 572 VRDVHPTHYGRICPIETPEGQNIGLISSLAIYAKINKY 609
Score = 73 (30.8 bits), Expect = 6.2e-20, Sum P(6) = 6.2e-20
Identities = 26/80 (32%), Positives = 40/80 (50%)
Query: 667 MGFSVQAL-KF-RADQKLYHLQTPQTPI---VRTNTYTKYG--ID--EYPTGTNAIVAVL 717
+G + L KF R++ Q P I VRTN G ID E G N +VA +
Sbjct: 770 LGVDIYKLRKFQRSNHNTCINQRPIVKIGDYVRTNDVIADGAAIDRGELALGKNVLVAFM 829
Query: 718 AYTGYDMEDAMILNKSSVDR 737
++ GY+ ED+++++ V R
Sbjct: 830 SWQGYNFEDSIVISSDVVKR 849
Score = 58 (25.5 bits), Expect = 6.2e-20, Sum P(6) = 6.2e-20
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 613 CPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
C GG+ + ++ P ++SV A+L P+ ++N + R + M +Q +
Sbjct: 661 CRHGGNFVMVKREDVNYIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAV 715
Score = 45 (20.9 bits), Expect = 6.2e-20, Sum P(6) = 6.2e-20
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 105 GYFILNGLERVFRS 118
G FI+NG+ERV S
Sbjct: 158 GTFIINGIERVIVS 171
Score = 45 (20.9 bits), Expect = 6.8e-17, Sum P(6) = 6.8e-17
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 236 VQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN---DNNDKF 290
+ L++ ++ I ++ VIDG+ ++S + T DY D N++F
Sbjct: 597 ISSLAIYAKINKYGFIESPYRKVIDGVVTDSVEYLLATQESDYYIADAGAALDENNRF 654
Score = 45 (20.9 bits), Expect = 2.9e-15, Sum P(5) = 2.9e-15
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 575 FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG-RRNAFPATHEEIH 633
F +P +++ S+ SQ ++ P +V + R G GG R ++H
Sbjct: 517 FVNPKILATVLKDFFSSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVH 576
Query: 634 PT 635
PT
Sbjct: 577 PT 578
>UNIPROTKB|I3L6M3 [details] [associations]
symbol:LOC100737037 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU683880 EMBL:CU914657
Ensembl:ENSSSCT00000030129 OMA:LLNTTEC Uniprot:I3L6M3
Length = 232
Score = 242 (90.2 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 72/218 (33%), Positives = 105/218 (48%)
Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
M KQ MG + R D +Y L PQ P+V+T T ++ P G NA VAV++Y+G
Sbjct: 1 MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSG 60
Query: 722 YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSV 778
YD+EDA++LNK+S+DRG +Y+ L N+ D+ G L + H +
Sbjct: 61 YDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEI 120
Query: 779 IDSDGLPYVGQMIHPGEPYCSIYDKT-TNSWRTNSRKGSESVFVDYVAVDMKNSKN---- 833
+D+DG+ G+ + + + T T S + + D V + K + +
Sbjct: 121 LDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKD-VPITYKGATDSYIE 179
Query: 834 ---LPQKANIRF------RHTRNPIIGDKFSSRHGQKG 862
+ A F R TR P IGDKFSSRHGQKG
Sbjct: 180 KVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 217
>TIGR_CMR|DET_0603 [details] [associations]
symbol:DET_0603 "DNA-directed RNA polymerase, beta
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 OMA:FMTWEGY
RefSeq:YP_181345.1 ProteinModelPortal:Q3Z8V4 STRING:Q3Z8V4
PRIDE:Q3Z8V4 GeneID:3230060 KEGG:det:DET0603 PATRIC:21608277
BioCyc:DETH243164:GJNF-604-MONOMER Uniprot:Q3Z8V4
Length = 1272
Score = 142 (55.0 bits), Expect = 4.7e-19, Sum P(6) = 4.7e-19
Identities = 37/105 (35%), Positives = 52/105 (49%)
Query: 829 KNSKNLPQKAN----IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
+N +LP + N + R +GDK + RHG KGV S + P DMP+ G D
Sbjct: 865 ENGDDLPARVNKWVQVWVAQKRKVSVGDKLAGRHGNKGVISIIAPVEDMPYLP-DGTPVD 923
Query: 885 LIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
+++NP PSRM + +LE+ G L G F ATP + T
Sbjct: 924 VVLNPIGVPSRMNLGQILETHLGWAGHLLG-FRVATPVFDGADDT 967
Score = 121 (47.7 bits), Expect = 4.7e-19, Sum P(6) = 4.7e-19
Identities = 30/89 (33%), Positives = 43/89 (48%)
Query: 958 GVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXX 1017
G VL G G + +G +Y +L H+V DK R+TG I++QP
Sbjct: 1067 GKSVLRDGRTGETFDQPVTVGNMYILKLIHLVEDKVHARATGPYSLISQQPLGGKAQFGG 1126
Query: 1018 XXFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
FGEME ++ A+G A+ L + L SD
Sbjct: 1127 QRFGEMEVWAMYAYGTAHNLQEMLTIKSD 1155
Score = 83 (34.3 bits), Expect = 4.7e-19, Sum P(6) = 4.7e-19
Identities = 29/106 (27%), Positives = 56/106 (52%)
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
++ ++ T+ G E G N +VA +++ G++ EDA+IL++ V R I+ T+ +
Sbjct: 710 VLADSSATENG--ELALGQNCVVAFMSWQGFNYEDAIILSERLV-REDAFTSIHITKH-E 765
Query: 752 LSDDGNKVDRGQKLFRR--NKDAKSLHSVIDSDGLPYVGQMIHPGE 795
L K+ G+++ R N +SL +D DG+ +G + P +
Sbjct: 766 LEAHDTKLG-GEEITRDIPNVGEESLRE-LDEDGIIRIGAEVGPDD 809
Score = 69 (29.3 bits), Expect = 4.7e-19, Sum P(6) = 4.7e-19
Identities = 31/126 (24%), Positives = 57/126 (45%)
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRD-FSKMRTSILRVL 496
VR + +G +CP+ TP+G GL+ + + R+ Y R +SK++ + + L
Sbjct: 431 VRDVHYSHYGRICPIETPEGPNIGLIGSLATYSRINRYGFVETPYRKVYSKLKNNDKK-L 489
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
+G+ + ++ S VL+ G VV S E K+++ L + +
Sbjct: 490 VGLKLAAAV-----SDKDKVLASA--GSVV----SEENFKLISKLPECDIQVMPFV--SA 536
Query: 557 EVGYVP 562
EV Y+P
Sbjct: 537 EVKYMP 542
Score = 59 (25.8 bits), Expect = 1.1e-16, Sum P(6) = 1.1e-16
Identities = 31/137 (22%), Positives = 55/137 (40%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
++ P + SV A+L P+ +H+ + R + M +Q +V L+ A ++
Sbjct: 589 DVSPKQIFSVAASLIPFLEHDDANRALMGANMQRQ----AVPLLRAEAPMVATGMEREAA 644
Query: 691 PIVRTNTYTKY-GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS-SVDRGMCHGQIYQTE 748
+ K G+ T I+ T +D +L K ++G C I Q
Sbjct: 645 RYSGQVIFAKRAGVAASVTSEKIIIR----TAEGQDDEYLLKKFVRTNQGTC---INQHA 697
Query: 749 TIDLSDDGNKVDRGQKL 765
I+ G K++ GQ L
Sbjct: 698 VIN---KGQKIEAGQVL 711
Score = 48 (22.0 bits), Expect = 4.7e-19, Sum P(6) = 4.7e-19
Identities = 28/115 (24%), Positives = 47/115 (40%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE-----RF 69
L+ ++SF + +EGL E+ + K + G + ++EF + P + E R
Sbjct: 31 LIEMQLQSFVWFQEEGLRELIEEISPIK-DFVGNRL-ELEFIGYEFREPRLSEYECTQRD 88
Query: 70 NFGQFPVMLKTRRC-HLQGADSQKLVSLKEEAAEMG--GYFILNGLERVFRSVIL 121
P+ +K R G + + M G FI +G ERV S +L
Sbjct: 89 QTYSVPLYVKARLIVKTTGEIKEPFDLFFGDIPLMTALGTFITSGTERVVVSQLL 143
Score = 46 (21.3 bits), Expect = 4.7e-19, Sum P(6) = 4.7e-19
Identities = 11/52 (21%), Positives = 27/52 (51%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYD--EKYKKEKGAVGSPLVSERVKIIL 233
+PV +L+A+ ++DL+I N + E++ + PL+ + + ++
Sbjct: 195 IPVSTLLRAIGYSDDLDILNLFEVIDNDPERHYIQSSIDRDPLIKDEISALI 246
Score = 42 (19.8 bits), Expect = 2.7e-12, Sum P(5) = 2.7e-12
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTP----IVRTNTYTK---YGIDEYP 707
++++ GF V+ + + ++ ++TP+ P I TY++ YG E P
Sbjct: 422 LSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGSLATYSRINRYGFVETP 474
>TIGR_CMR|GSU_2863 [details] [associations]
symbol:GSU_2863 "DNA-directed RNA polymerase, beta
subunit" species:243231 "Geobacter sulfurreducens PCA" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218612
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 OMA:FMTWEGY
RefSeq:NP_953905.1 ProteinModelPortal:Q748Y6 PRIDE:Q748Y6
GeneID:2686783 KEGG:gsu:GSU2863 PATRIC:22028577
BioCyc:GSUL243231:GH27-2844-MONOMER Uniprot:Q748Y6
Length = 1370
Score = 144 (55.7 bits), Expect = 7.7e-19, Sum P(5) = 7.7e-19
Identities = 34/104 (32%), Positives = 50/104 (48%)
Query: 943 DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMD 1002
+++ ML GF+ LY G G ++ +G +Y +L H+V DK RS G
Sbjct: 1218 EQIRSMLDKAGFDETAQVSLYDGKSGEPFKHKVTVGVMYVLKLHHLVDDKIHARSIGPYS 1277
Query: 1003 QITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
+T+QP GEME ++ A+GAAY L + L SD
Sbjct: 1278 LVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSD 1321
Score = 144 (55.7 bits), Expect = 7.7e-19, Sum P(5) = 7.7e-19
Identities = 44/136 (32%), Positives = 69/136 (50%)
Query: 819 VFVDYVAVDMKNSKNLP----QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
VF D V +K +LP + + R +GDK + RHG KGV S++ P+ DMP
Sbjct: 1056 VFDDKVQ-KLKRGDDLPPGVIKMVKVYIAIKRKLQVGDKMAGRHGNKGVVSRILPEEDMP 1114
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESV---AAKG-GSLHGKFMDATPFANSVKKTN 930
+ G ++++NP PSRM + +LE+ AAKG G + +++ A+ +K
Sbjct: 1115 YME-DGRPVEIVLNPLGVPSRMNVGQILETHLGWAAKGIGWKIEEMLESYSPADHIKGYL 1173
Query: 931 GDT-GTDESKSLVDEL 945
D GT E + +D L
Sbjct: 1174 KDVYGTTEMDTFLDSL 1189
Score = 71 (30.1 bits), Expect = 7.7e-19, Sum P(5) = 7.7e-19
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV 472
VR + P +G +CP+ TP+G GL+ +++ R+
Sbjct: 555 VRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARI 589
Score = 66 (28.3 bits), Expect = 7.7e-19, Sum P(5) = 7.7e-19
Identities = 27/118 (22%), Positives = 53/118 (44%)
Query: 689 QTPIVRTNTYTKYG--IDEYPT--------GTNAIVAVLAYTGYDMEDAMILNKSSV-DR 737
Q P+V+ + K G I + P+ G N +VA + + GY+ ED++++++ V D
Sbjct: 775 QRPVVKVGDHVKRGDVIADGPSTDMGELALGQNVVVAFMPWGGYNFEDSILVSEKLVKDD 834
Query: 738 GMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE 795
I + E + K + + N ++L +D G+ +G + PG+
Sbjct: 835 RYTSIHIEEFECVARDTKLGKEEITSDI--PNLGEEALKD-LDESGIIRIGAEVKPGD 889
Score = 49 (22.3 bits), Expect = 1.7e-09, Sum P(5) = 1.7e-09
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 904 SVAAKGGSLHGKFMDATPFANSVK-KTNGDTGTDESKSLV 942
+V AKG ++ + +DA P + +G+ G DE S +
Sbjct: 1003 TVIAKGAAITEEALDAIPLDRWDEISVSGEAGVDEKVSAI 1042
Score = 42 (19.8 bits), Expect = 7.7e-19, Sum P(5) = 7.7e-19
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 105 GYFILNGLERVFRS 118
G FI+NG ERV S
Sbjct: 140 GTFIINGTERVIVS 153
Score = 42 (19.8 bits), Expect = 5.8e-16, Sum P(5) = 5.8e-16
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 345 KLIQDEIENNGKKFDFFNL-----ANIKKVMEKNPSKQIGTSIE 383
K+ +DE + G D +NL +N + + P ++G ++
Sbjct: 743 KIDEDEFDETGTGVDIYNLIKFARSNQNTCINQRPVVKVGDHVK 786
>UNIPROTKB|P0A8V2 [details] [associations]
symbol:rpoB "RNA polymerase, beta subunit" species:83333
"Escherichia coli K-12" [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016020
"membrane" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006351 EMBL:U00006 DrugBank:DB01045 PDB:3IYD
PDBsum:3IYD GO:GO:0003899 EMBL:V00339 PDB:3T72 PDBsum:3T72
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 PDB:3LU0 PDBsum:3LU0 KO:K03043
ProtClustDB:PRK00405 Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3
TIGRFAMs:TIGR02013 OMA:FMTWEGY EMBL:V00340 EMBL:U76222 EMBL:V00341
EMBL:M38292 EMBL:M38293 EMBL:M38287 EMBL:M38304 EMBL:U77436
EMBL:M38303 PIR:F65205 RefSeq:NP_418414.1 RefSeq:YP_491474.1
PDB:3LTI PDB:3TBI PDBsum:3LTI PDBsum:3TBI ProteinModelPortal:P0A8V2
SMR:P0A8V2 DIP:DIP-35777N IntAct:P0A8V2 MINT:MINT-1222430
SWISS-2DPAGE:P0A8V2 PaxDb:P0A8V2 PRIDE:P0A8V2
EnsemblBacteria:EBESCT00000000939 EnsemblBacteria:EBESCT00000000940
EnsemblBacteria:EBESCT00000000941 EnsemblBacteria:EBESCT00000017696
GeneID:12934478 GeneID:948488 KEGG:ecj:Y75_p3210 KEGG:eco:b3987
PATRIC:32123495 EchoBASE:EB0887 EcoGene:EG10894
BioCyc:EcoCyc:RPOB-MONOMER BioCyc:ECOL316407:JW3950-MONOMER
BioCyc:MetaCyc:RPOB-MONOMER BindingDB:P0A8V2 ChEMBL:CHEMBL1852
DrugBank:DB01220 EvolutionaryTrace:P0A8V2 Genevestigator:P0A8V2
Uniprot:P0A8V2
Length = 1342
Score = 154 (59.3 bits), Expect = 8.8e-19, Sum P(6) = 8.8e-19
Identities = 37/103 (35%), Positives = 52/103 (50%)
Query: 944 ELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQ 1003
E+ E+L+ G LY G G + + +G +Y +L H+V DK RSTG+
Sbjct: 1194 EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253
Query: 1004 ITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
+T+QP FGEME +L A+GAAY L + L SD
Sbjct: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296
Score = 132 (51.5 bits), Expect = 8.8e-19, Sum P(6) = 8.8e-19
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES---VAA 907
GDK + RHG KGV S++ P DMP+ G D+++NP PSRM I +LE+ +AA
Sbjct: 1063 GDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121
Query: 908 KG 909
KG
Sbjct: 1122 KG 1123
Score = 74 (31.1 bits), Expect = 8.8e-19, Sum P(6) = 8.8e-19
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
VR + P +G +CP+ TP+G GL+N ++ + Y
Sbjct: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584
Score = 65 (27.9 bits), Expect = 8.8e-19, Sum P(6) = 8.8e-19
Identities = 38/178 (21%), Positives = 73/178 (41%)
Query: 592 SEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHN 651
++ + N++ G F + + C G+ + + ++ ++SV A+L P+ +H+
Sbjct: 617 AQANSNLDEEGHFVEDL--VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR---TNTYTKYGIDEYPT 708
+ R + M +Q +V L RAD+ L + V T + G+ +Y
Sbjct: 675 DANRALMGANMQRQ----AVPTL--RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVD 728
Query: 709 GTNAIVAVLAYTGYDMEDAM-ILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKL 765
+ ++ V Y E + I N + R + I Q + L G V+RG L
Sbjct: 729 ASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL---GEPVERGDVL 783
Score = 63 (27.2 bits), Expect = 1.4e-18, Sum P(6) = 1.4e-18
Identities = 28/129 (21%), Positives = 55/129 (42%)
Query: 703 IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRG 762
+ E G N VA + + GY+ ED++++++ V I+ E +S D K+
Sbjct: 791 LGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR-FTTIHIQELACVSRD-TKLGPE 848
Query: 763 QKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVD 822
+ ++ S +D G+ Y+G + G+ + T K ++F +
Sbjct: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908
Query: 823 YVAVDMKNS 831
A D+K+S
Sbjct: 909 K-ASDVKDS 916
Score = 45 (20.9 bits), Expect = 8.8e-19, Sum P(6) = 8.8e-19
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 44 SYTGKLMADVEFQYLDAGSPV--VRERFNFG---QFPVMLKTRRC-HLQGADSQKLVSLK 97
SY+G +++++ G PV V+E G P+ +K R + + A + +K
Sbjct: 61 SYSGN--SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118
Query: 98 EEAAEMG--------GYFILNGLERVFRS 118
E+ MG G F++NG ERV S
Sbjct: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVS 147
Score = 38 (18.4 bits), Expect = 2.9e-15, Sum P(6) = 2.9e-15
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 255 FQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDK 289
++ V DG+ ++ + ++ +Y+ N N D+
Sbjct: 591 YRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDE 625
Score = 37 (18.1 bits), Expect = 8.8e-19, Sum P(6) = 8.8e-19
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 1103 MPYVFRYLAAELAAMNIKITLQ 1124
MP F L E+ ++ I I L+
Sbjct: 1319 MPESFNVLLKEIRSLGINIELE 1340
>UNIPROTKB|Q9KV30 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 144 (55.7 bits), Expect = 6.1e-18, Sum P(8) = 6.1e-18
Identities = 35/99 (35%), Positives = 47/99 (47%)
Query: 948 MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
ML G L+ G G + +G +Y +L H+V DK RSTG+ +T+Q
Sbjct: 1197 MLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1256
Query: 1008 PXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
P FGEME +L A+GAAY L + L SD
Sbjct: 1257 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295
Score = 132 (51.5 bits), Expect = 6.1e-18, Sum P(8) = 6.1e-18
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE---SVAA 907
GDK + RHG KGV S++ P DMP+ G D+++NP PSRM I +LE +AA
Sbjct: 1063 GDKMAGRHGNKGVISKINPVEDMPYDE-NGQPVDIVLNPLGVPSRMNIGQILEVHLGLAA 1121
Query: 908 KG 909
KG
Sbjct: 1122 KG 1123
Score = 74 (31.1 bits), Expect = 6.1e-18, Sum P(8) = 6.1e-18
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
VR + +G LCP+ TP+G GL+N +++ R Y
Sbjct: 547 VRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEY 584
Score = 57 (25.1 bits), Expect = 6.1e-18, Sum P(8) = 6.1e-18
Identities = 22/111 (19%), Positives = 47/111 (42%)
Query: 688 PQTPIVRTNTYT---KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
P P+ R + + E G N +A + + GY+ ED++++++ V I
Sbjct: 773 PGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDR-FTTI 831
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE 795
+ E ++ D K+ + ++ S +D G+ Y+G + G+
Sbjct: 832 HIQELSCVARD-TKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGD 881
Score = 52 (23.4 bits), Expect = 6.1e-18, Sum P(8) = 6.1e-18
Identities = 10/51 (19%), Positives = 25/51 (49%)
Query: 617 GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
G+ G + ++ ++S+ A+L P+ +H+ + R + M +Q +
Sbjct: 640 GESGLHPREHVDYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAV 690
Score = 44 (20.5 bits), Expect = 6.1e-18, Sum P(8) = 6.1e-18
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 44 SYTGKLMADVEFQYLDAGSPV--VRERFNFG---QFPVMLKTRRCHL-QGADSQKLVSLK 97
SY G +++++ G PV V+E G P+ +K R + A + + +K
Sbjct: 61 SYNGN--SELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIK 118
Query: 98 EEAAEMG--------GYFILNGLERVFRS 118
E+ MG G F++NG ERV S
Sbjct: 119 EQEVYMGEIPLMTENGTFVINGTERVIVS 147
Score = 38 (18.4 bits), Expect = 1.3e-16, Sum P(8) = 1.3e-16
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 630 EEIHPTGMLSV-VANLTPYSDHNQSPR-NMYQCQM 662
EE+ P G + + NLT Y+ NQ+ N C M
Sbjct: 739 EELIP-GEAGIDIYNLTKYTRSNQNTCINQRPCVM 772
Score = 37 (18.1 bits), Expect = 6.1e-18, Sum P(8) = 6.1e-18
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 184 LPVGIVLKALVDTND--LEIF 202
LP I+L+AL T+ L+IF
Sbjct: 204 LPASIILRALGKTSAEILDIF 224
Score = 37 (18.1 bits), Expect = 6.1e-18, Sum P(8) = 6.1e-18
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 1103 MPYVFRYLAAELAAMNIKITLQ 1124
MP F L E+ ++ I I L+
Sbjct: 1318 MPESFNVLLKEIRSLGINIELE 1339
>TIGR_CMR|VC_0328 [details] [associations]
symbol:VC_0328 "DNA-directed RNA polymerase, beta subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 144 (55.7 bits), Expect = 6.1e-18, Sum P(8) = 6.1e-18
Identities = 35/99 (35%), Positives = 47/99 (47%)
Query: 948 MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
ML G L+ G G + +G +Y +L H+V DK RSTG+ +T+Q
Sbjct: 1197 MLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1256
Query: 1008 PXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
P FGEME +L A+GAAY L + L SD
Sbjct: 1257 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295
Score = 132 (51.5 bits), Expect = 6.1e-18, Sum P(8) = 6.1e-18
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE---SVAA 907
GDK + RHG KGV S++ P DMP+ G D+++NP PSRM I +LE +AA
Sbjct: 1063 GDKMAGRHGNKGVISKINPVEDMPYDE-NGQPVDIVLNPLGVPSRMNIGQILEVHLGLAA 1121
Query: 908 KG 909
KG
Sbjct: 1122 KG 1123
Score = 74 (31.1 bits), Expect = 6.1e-18, Sum P(8) = 6.1e-18
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
VR + +G LCP+ TP+G GL+N +++ R Y
Sbjct: 547 VRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEY 584
Score = 57 (25.1 bits), Expect = 6.1e-18, Sum P(8) = 6.1e-18
Identities = 22/111 (19%), Positives = 47/111 (42%)
Query: 688 PQTPIVRTNTYT---KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
P P+ R + + E G N +A + + GY+ ED++++++ V I
Sbjct: 773 PGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDR-FTTI 831
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE 795
+ E ++ D K+ + ++ S +D G+ Y+G + G+
Sbjct: 832 HIQELSCVARD-TKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGD 881
Score = 52 (23.4 bits), Expect = 6.1e-18, Sum P(8) = 6.1e-18
Identities = 10/51 (19%), Positives = 25/51 (49%)
Query: 617 GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
G+ G + ++ ++S+ A+L P+ +H+ + R + M +Q +
Sbjct: 640 GESGLHPREHVDYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAV 690
Score = 44 (20.5 bits), Expect = 6.1e-18, Sum P(8) = 6.1e-18
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 44 SYTGKLMADVEFQYLDAGSPV--VRERFNFG---QFPVMLKTRRCHL-QGADSQKLVSLK 97
SY G +++++ G PV V+E G P+ +K R + A + + +K
Sbjct: 61 SYNGN--SELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIK 118
Query: 98 EEAAEMG--------GYFILNGLERVFRS 118
E+ MG G F++NG ERV S
Sbjct: 119 EQEVYMGEIPLMTENGTFVINGTERVIVS 147
Score = 38 (18.4 bits), Expect = 1.3e-16, Sum P(8) = 1.3e-16
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 630 EEIHPTGMLSV-VANLTPYSDHNQSPR-NMYQCQM 662
EE+ P G + + NLT Y+ NQ+ N C M
Sbjct: 739 EELIP-GEAGIDIYNLTKYTRSNQNTCINQRPCVM 772
Score = 37 (18.1 bits), Expect = 6.1e-18, Sum P(8) = 6.1e-18
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 184 LPVGIVLKALVDTND--LEIF 202
LP I+L+AL T+ L+IF
Sbjct: 204 LPASIILRALGKTSAEILDIF 224
Score = 37 (18.1 bits), Expect = 6.1e-18, Sum P(8) = 6.1e-18
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 1103 MPYVFRYLAAELAAMNIKITLQ 1124
MP F L E+ ++ I I L+
Sbjct: 1318 MPESFNVLLKEIRSLGINIELE 1339
>UNIPROTKB|P0C501 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522331 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218611
ProteinModelPortal:P0C501 Gramene:P0C501 Genevestigator:P0C501
Uniprot:P0C501
Length = 1075
Score = 220 (82.5 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 65/208 (31%), Positives = 93/208 (44%)
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
+GDK + RHG KG+ S++ P DMP+ G D++ NP PSRM + + ES
Sbjct: 821 VGDKVAGRHGNKGIISKILPRQDMPYLQ-DGTPVDMVFNPLGVPSRMNVGQIFESSLGLA 879
Query: 910 GSLHGKFMDATPFANSVKKTNGDTGTDESKSLV-DELGEMLRTCG----FN--YHGVEVL 962
G L K PF ++ + S+ LV EL E + F Y G +
Sbjct: 880 GDLLKKHYRIAPFDERYEQ-------EASRKLVFSELYEASKQTKNPWVFEPEYPGKSRI 932
Query: 963 YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGE 1022
+ G G + IG Y +L H V +K RSTG +T+QP GE
Sbjct: 933 FDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGE 992
Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
ME +L G A++L + L SD+ +A
Sbjct: 993 MEVWALEGFGVAHILQEILTYKSDHLIA 1020
Score = 68 (29.0 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 22/95 (23%), Positives = 47/95 (49%)
Query: 705 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC---HGQIYQTETIDLSDDGNKVDR 761
E G N +VA + + GY+ EDA+++++ V + H + Y+ +T D + G+
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQT-DTTSQGS---- 710
Query: 762 GQKLFRRNKDAKS-LHSVIDSDGLPYVGQMIHPGE 795
+K+ + + L +D +G+ +G + G+
Sbjct: 711 AEKITKEIPHLEEHLLRNLDRNGVVKLGSWVETGD 745
Score = 61 (26.5 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 434 RTTSVRK--LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
RT S R + P +G +CP+ T +G GL + R+ ++ S
Sbjct: 408 RTASFRSRDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGS 454
Score = 54 (24.1 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 624 AFPATH-EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
A+ H I P S+ +L P+ +HN + R + M +Q + S
Sbjct: 517 AWEQIHVRSIFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAVPLS 564
Score = 40 (19.1 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 168 NGSVRLGFWLQGKEYLL 184
NG V+LG W++ + L+
Sbjct: 732 NGVVKLGSWVETGDILV 748
Score = 39 (18.8 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 105 GYFILNGLERVFRSVIL 121
G FI+NG+ R+ + IL
Sbjct: 109 GTFIINGIYRIVINQIL 125
>UNIPROTKB|P0C502 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522329 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 ProtClustDB:CHL00001
RefSeq:YP_654206.1 ProteinModelPortal:P0C502 GeneID:4126922
Gramene:P0C502 Uniprot:P0C502
Length = 1075
Score = 220 (82.5 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 65/208 (31%), Positives = 93/208 (44%)
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
+GDK + RHG KG+ S++ P DMP+ G D++ NP PSRM + + ES
Sbjct: 821 VGDKVAGRHGNKGIISKILPRQDMPYLQ-DGTPVDMVFNPLGVPSRMNVGQIFESSLGLA 879
Query: 910 GSLHGKFMDATPFANSVKKTNGDTGTDESKSLV-DELGEMLRTCG----FN--YHGVEVL 962
G L K PF ++ + S+ LV EL E + F Y G +
Sbjct: 880 GDLLKKHYRIAPFDERYEQ-------EASRKLVFSELYEASKQTKNPWVFEPEYPGKSRI 932
Query: 963 YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGE 1022
+ G G + IG Y +L H V +K RSTG +T+QP GE
Sbjct: 933 FDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGE 992
Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
ME +L G A++L + L SD+ +A
Sbjct: 993 MEVWALEGFGVAHILQEILTYKSDHLIA 1020
Score = 68 (29.0 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 22/95 (23%), Positives = 47/95 (49%)
Query: 705 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC---HGQIYQTETIDLSDDGNKVDR 761
E G N +VA + + GY+ EDA+++++ V + H + Y+ +T D + G+
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQT-DTTSQGS---- 710
Query: 762 GQKLFRRNKDAKS-LHSVIDSDGLPYVGQMIHPGE 795
+K+ + + L +D +G+ +G + G+
Sbjct: 711 AEKITKEIPHLEEHLLRNLDRNGVVKLGSWVETGD 745
Score = 61 (26.5 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 434 RTTSVRK--LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
RT S R + P +G +CP+ T +G GL + R+ ++ S
Sbjct: 408 RTASFRSRDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGS 454
Score = 54 (24.1 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 624 AFPATH-EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
A+ H I P S+ +L P+ +HN + R + M +Q + S
Sbjct: 517 AWEQIHVRSIFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAVPLS 564
Score = 40 (19.1 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 168 NGSVRLGFWLQGKEYLL 184
NG V+LG W++ + L+
Sbjct: 732 NGVVKLGSWVETGDILV 748
Score = 39 (18.8 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 105 GYFILNGLERVFRSVIL 121
G FI+NG+ R+ + IL
Sbjct: 109 GTFIINGIYRIVINQIL 125
>UNIPROTKB|P0C503 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901
EMBL:AY522330 GenomeReviews:AY522330_GR GO:GO:0009295 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:CHL00001 PIR:JQ0213 RefSeq:NP_039373.1
ProteinModelPortal:P0C503 STRING:P0C503
EnsemblPlants:LOC_Osp1g00240.1 GeneID:3131432 KEGG:osa:3131432
Gramene:P0C503 OMA:HFLVSEK Uniprot:P0C503
Length = 1075
Score = 220 (82.5 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 65/208 (31%), Positives = 93/208 (44%)
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
+GDK + RHG KG+ S++ P DMP+ G D++ NP PSRM + + ES
Sbjct: 821 VGDKVAGRHGNKGIISKILPRQDMPYLQ-DGTPVDMVFNPLGVPSRMNVGQIFESSLGLA 879
Query: 910 GSLHGKFMDATPFANSVKKTNGDTGTDESKSLV-DELGEMLRTCG----FN--YHGVEVL 962
G L K PF ++ + S+ LV EL E + F Y G +
Sbjct: 880 GDLLKKHYRIAPFDERYEQ-------EASRKLVFSELYEASKQTKNPWVFEPEYPGKSRI 932
Query: 963 YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGE 1022
+ G G + IG Y +L H V +K RSTG +T+QP GE
Sbjct: 933 FDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGE 992
Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
ME +L G A++L + L SD+ +A
Sbjct: 993 MEVWALEGFGVAHILQEILTYKSDHLIA 1020
Score = 68 (29.0 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 22/95 (23%), Positives = 47/95 (49%)
Query: 705 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC---HGQIYQTETIDLSDDGNKVDR 761
E G N +VA + + GY+ EDA+++++ V + H + Y+ +T D + G+
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQT-DTTSQGS---- 710
Query: 762 GQKLFRRNKDAKS-LHSVIDSDGLPYVGQMIHPGE 795
+K+ + + L +D +G+ +G + G+
Sbjct: 711 AEKITKEIPHLEEHLLRNLDRNGVVKLGSWVETGD 745
Score = 61 (26.5 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 434 RTTSVRK--LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
RT S R + P +G +CP+ T +G GL + R+ ++ S
Sbjct: 408 RTASFRSRDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGS 454
Score = 54 (24.1 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 624 AFPATH-EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
A+ H I P S+ +L P+ +HN + R + M +Q + S
Sbjct: 517 AWEQIHVRSIFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAVPLS 564
Score = 40 (19.1 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 168 NGSVRLGFWLQGKEYLL 184
NG V+LG W++ + L+
Sbjct: 732 NGVVKLGSWVETGDILV 748
Score = 39 (18.8 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 105 GYFILNGLERVFRSVIL 121
G FI+NG+ R+ + IL
Sbjct: 109 GTFIINGIYRIVINQIL 125
>UNIPROTKB|Q6ENI4 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AP006728 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:YP_052739.1 ProteinModelPortal:Q6ENI4
GeneID:2885962 Gramene:Q6ENI4 ProtClustDB:CHL00001 Uniprot:Q6ENI4
Length = 1075
Score = 220 (82.5 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 65/208 (31%), Positives = 93/208 (44%)
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
+GDK + RHG KG+ S++ P DMP+ G D++ NP PSRM + + ES
Sbjct: 821 VGDKVAGRHGNKGIISKILPRQDMPYLQ-DGTPVDMVFNPLGVPSRMNVGQIFESSLGLA 879
Query: 910 GSLHGKFMDATPFANSVKKTNGDTGTDESKSLV-DELGEMLRTCG----FN--YHGVEVL 962
G L K PF ++ + S+ LV EL E + F Y G +
Sbjct: 880 GDLLKKHYRIAPFDERYEQ-------EASRKLVFSELYEASKQTKNPWVFEPEYPGKSRI 932
Query: 963 YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGE 1022
+ G G + IG Y +L H V +K RSTG +T+QP GE
Sbjct: 933 FDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGE 992
Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
ME +L G A++L + L SD+ +A
Sbjct: 993 MEVWALEGFGVAHILQEILTYKSDHLIA 1020
Score = 68 (29.0 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 22/95 (23%), Positives = 47/95 (49%)
Query: 705 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC---HGQIYQTETIDLSDDGNKVDR 761
E G N +VA + + GY+ EDA+++++ V + H + Y+ +T D + G+
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQT-DTTSQGS---- 710
Query: 762 GQKLFRRNKDAKS-LHSVIDSDGLPYVGQMIHPGE 795
+K+ + + L +D +G+ +G + G+
Sbjct: 711 AEKITKEIPHLEEHLLRNLDRNGVVKLGSWVETGD 745
Score = 61 (26.5 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 434 RTTSVRK--LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
RT S R + P +G +CP+ T +G GL + R+ ++ S
Sbjct: 408 RTASFRSRDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGS 454
Score = 54 (24.1 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 624 AFPATH-EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
A+ H I P S+ +L P+ +HN + R + M +Q + S
Sbjct: 517 AWEQIHVRSIFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAVPLS 564
Score = 40 (19.1 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 168 NGSVRLGFWLQGKEYLL 184
NG V+LG W++ + L+
Sbjct: 732 NGVVKLGSWVETGDILV 748
Score = 39 (18.8 bits), Expect = 1.9e-17, Sum P(5) = 1.9e-17
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 105 GYFILNGLERVFRSVIL 121
G FI+NG+ R+ + IL
Sbjct: 109 GTFIINGIYRIVINQIL 125
>UNIPROTKB|F8VRE2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR015712
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022248 ProteinModelPortal:F8VRE2
SMR:F8VRE2 Ensembl:ENST00000551370 ArrayExpress:F8VRE2 Bgee:F8VRE2
Uniprot:F8VRE2
Length = 676
Score = 161 (61.7 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 72/320 (22%), Positives = 136/320 (42%)
Query: 233 LAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKF 290
L E Q + T++Q L++IG Q + G ++ A ++ I H+ F
Sbjct: 269 LEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNF 328
Query: 291 NL-LIF---MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKL 346
I+ M++++ V D D N+ + L G L+++ ++ + + + KK
Sbjct: 329 RAKCIYTAVMVRRVILAQGDNKVDDR-DYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK- 386
Query: 347 IQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYT 406
I D++ + F ++ K M ++ QI + + TG + + R G T
Sbjct: 387 IADQVIPKQRAAQF----DVVKHMRQD---QITNGMVNAISTGNWSLKRFK--MDRQGVT 437
Query: 407 VQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNH 465
RL+++ + + + F R S R L P WG LCP TP+GE CGL+ +
Sbjct: 438 QVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 495
Query: 466 MTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRV 525
+ + + + ++ S + + +L G + S P V V L+G +
Sbjct: 496 LALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEEL--SYPN--------VFLVFLNGNI 545
Query: 526 VGVIPSSEIEKVVAHLRRLK 545
+GVI + +K+V R ++
Sbjct: 546 LGVI--RDHKKLVNTFRLMR 563
Score = 130 (50.8 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 41/167 (24%), Positives = 81/167 (48%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 102 CRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLN 159
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
E + GGYFI+ G+E+V +++ +Q +S R R+G +V +K +
Sbjct: 160 ECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIVEADRKGAVGASVTSSTHEKKSR 213
Query: 157 SSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
+++ +K +YL + ++ ++ +P+ I+ KA+ +D EI
Sbjct: 214 TNMAVKQGRFYLRHNTL-------SED--IPIVIIFKAMGVESDQEI 251
Score = 72 (30.4 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 32/126 (25%), Positives = 58/126 (46%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRER 68
F ++ LV+ HI+SF+Y ++ + ++ K++ M +++ + G P V E
Sbjct: 33 FLKVKGLVKQHIDSFNYFINVEIKKIMK--ANEKVTSDADPMWYLKYLNIYVGLPDVEES 90
Query: 69 FNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPM 128
FN + PV C L+ +++ E Y G +R+ R+ LP P+
Sbjct: 91 FNVTR-PV--SPHECRLRDMTYSAPITVDIE------Y--TRGSQRIIRNA-LPIGRMPI 138
Query: 129 SMVRSS 134
M+RSS
Sbjct: 139 -MLRSS 143
>UNIPROTKB|P21421 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=NAS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0020011 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 PANTHER:PTHR20856:SF3
EMBL:X75544 EMBL:X95275 EMBL:X52177 PIR:S72282
ProteinModelPortal:P21421 GenomeReviews:X95275_GR Uniprot:P21421
Length = 1024
Score = 187 (70.9 bits), Expect = 1.8e-15, Sum P(5) = 1.8e-15
Identities = 52/191 (27%), Positives = 90/191 (47%)
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
+GDK +RHG KG+ S + D+P+ ++PD+ I+ + PSR+ I + E +
Sbjct: 767 LGDKICNRHGHKGIISYISEINDIPYLN-NKIQPDIFISAISIPSRINIGQIFEGIYGLN 825
Query: 910 GS-LHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
L+ +++ + N N + + K + + +NY+ L + G
Sbjct: 826 SLYLNTRYIISNNL-NKNYYNNYNHIFNYYKYNYNNNFNINSKMSYNYNKY-YLKNPFTG 883
Query: 969 TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPXXXXXXXXXXXFGEMERDSL 1028
+ I + +YY +L HM+ DKF+ R G ++T+QP FGEME +L
Sbjct: 884 NMINNSICLNNIYYYKLIHMIKDKFRYRFIGLYSELTQQPIKGNTKQGGQRFGEMEVWAL 943
Query: 1029 LAHGAAYLLHD 1039
A GA+YL +
Sbjct: 944 EAFGASYLFKE 954
Score = 69 (29.3 bits), Expect = 1.8e-15, Sum P(5) = 1.8e-15
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 705 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM---CHGQIYQ 746
EY G N +V +Y GY+ EDA+I+++ + + H IY+
Sbjct: 596 EYSLGNNLLVGYGSYLGYEYEDAIIISRKILYNNLYTSLHLNIYE 640
Score = 58 (25.5 bits), Expect = 1.8e-15, Sum P(5) = 1.8e-15
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 405 YTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLN 464
Y+ Q L+ + + G + + +R+L G++ ++T +G CGL+N
Sbjct: 326 YSDQVNNLSEINQKFKINMITTGLNSKFILNNDLRELPRNILGYISLINTNEGLTCGLVN 385
Query: 465 HMTS 468
++T+
Sbjct: 386 YLTT 389
Score = 55 (24.4 bits), Expect = 1.8e-15, Sum P(5) = 1.8e-15
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
+LS + NL P+ +N S RN+ +M Q
Sbjct: 470 LLSFIENLIPFIHYNDSIRNLMSIKMHTQ 498
Score = 54 (24.1 bits), Expect = 1.8e-15, Sum P(5) = 1.8e-15
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 264 SESYYAVAETVIRD--YIFVHLNDN-NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
S Y + + +I + Y + LN+N N KFN F+ K+ L+ + +++ + D++QN
Sbjct: 17 SNLYLLLIQEIIYNLRYYILFLNNNINVKFN---FIYYKIIILLTNININ-SIDTIQNIN 72
Query: 321 ILL 323
LL
Sbjct: 73 NLL 75
Score = 49 (22.3 bits), Expect = 5.7e-15, Sum P(5) = 5.7e-15
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 286 NNDKFNLLIFMLQKLFSLVDHTSVS-DNPDSLQNQEILLPGHLITIYLK 333
NN KFN LI +L L ++ + ++S +++ N++IL+ ++ IY K
Sbjct: 167 NNFKFNFLILLLY-LNNIYINKNISLFIYNNIINKKILIYNYIKFIYSK 214
Score = 43 (20.2 bits), Expect = 2.2e-14, Sum P(5) = 2.2e-14
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 280 FVHLNDNNDKFNLLIFMLQKLFS 302
F+++N KFN+LIF+L +++
Sbjct: 85 FININ-KIIKFNILIFILPFIYN 106
>TIGR_CMR|CPS_4769 [details] [associations]
symbol:CPS_4769 "DNA-directed RNA polymerase, beta
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_271413.1 STRING:Q47UV9 PRIDE:Q47UV9
GeneID:3523343 KEGG:cps:CPS_4769 PATRIC:21472355
BioCyc:CPSY167879:GI48-4775-MONOMER Uniprot:Q47UV9
Length = 1342
Score = 150 (57.9 bits), Expect = 2.0e-11, Sum P(5) = 2.0e-11
Identities = 37/103 (35%), Positives = 50/103 (48%)
Query: 944 ELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQ 1003
E+ E+ G VL G G E + +G +Y +L H+V DK RSTG+
Sbjct: 1194 EIKELFVLADMPQSGQFVLTDGRTGREFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253
Query: 1004 ITRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
+T+QP FGEME +L A+GAAY L + L SD
Sbjct: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296
Score = 136 (52.9 bits), Expect = 5.7e-10, Sum P(5) = 5.7e-10
Identities = 42/139 (30%), Positives = 69/139 (49%)
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES---VAA 907
GDK + RHG KGV S + P DMP+ G+ D+++NP PSRM I +LE+ +A
Sbjct: 1064 GDKMAGRHGNKGVISNVVPVEDMPYDQF-GVPVDIVLNPLGVPSRMNIGQILETHLGMAC 1122
Query: 908 KG-GSLHGKFMDATPFANSVKKTNGDT-GTDESKSLVDELG----EMLRTCGFNYHGVEV 961
+G G + ++A + ++ + ES+ +VD E+LR G G+ +
Sbjct: 1123 RGIGEKINRMLEAQQEIHKLRNFIQEVYNVGESRQVVDVASFSDDEVLRLAGNLRAGLPI 1182
Query: 962 L---YSGVYGTELTCEIFI 977
+ G E+ E+F+
Sbjct: 1183 ATPAFDGAAEKEIK-ELFV 1200
Score = 75 (31.5 bits), Expect = 2.0e-11, Sum P(5) = 2.0e-11
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
VR + P +G +CP+ TP+G GL+N ++ R +
Sbjct: 548 VRDVHPTHYGRVCPIETPEGPNIGLINSLSCYARTNDF 585
Score = 67 (28.6 bits), Expect = 2.0e-11, Sum P(5) = 2.0e-11
Identities = 33/146 (22%), Positives = 62/146 (42%)
Query: 691 PIVRTNTYT---KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV--DRGMCHGQIY 745
P+VR + + E G N +A + + GY+ ED+M+L++ DR I+
Sbjct: 777 PVVRGDVLADGPSTDMGELALGQNMRIAFMPWNGYNFEDSMLLSERVAIEDR---FTTIH 833
Query: 746 QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
E ++ D K+ + +S S +D G+ Y+G ++ G+
Sbjct: 834 IQELTCIARD-TKLGSEEITADIPNVGESALSKLDEAGVVYIGAEVNGGDILVGKVTPKG 892
Query: 806 NSWRTNSRKGSESVFVDYVAVDMKNS 831
+ T K ++F + A D+K+S
Sbjct: 893 ETQLTPEEKLLRAIFGEKAA-DVKDS 917
Score = 58 (25.5 bits), Expect = 2.0e-11, Sum P(5) = 2.0e-11
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
++ P ++SV A+L P+ +H+ + R + M +Q +
Sbjct: 655 DVSPQQIISVAASLIPFLEHDDANRALMGSNMQRQAV 691
Score = 41 (19.5 bits), Expect = 2.0e-11, Sum P(5) = 2.0e-11
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 105 GYFILNGLERVFRS 118
G F++NG ERV S
Sbjct: 134 GTFVINGTERVIVS 147
Score = 40 (19.1 bits), Expect = 2.5e-11, Sum P(5) = 2.5e-11
Identities = 32/133 (24%), Positives = 54/133 (40%)
Query: 40 QAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEE 99
+A T +L+A++ S + F+ G + M T R + + KL +L E
Sbjct: 313 EANAIITLELLAELSQAGHKVLSTLYMNEFDVGSY--MSDTLRVD---SSTNKLEALVEV 367
Query: 100 AAEM--GGYFILNGLERVFRSVILPKQNYPMSMV-RSSFRDRREGYTDKAVVIRCVRKDQ 156
M G + E +F ++ + Y +S V R F +RR G D ++D
Sbjct: 368 YRMMRPGEPPTKDAAEGLFSNLFFASERYDLSTVGRMKF-NRRVGNADDVGTGILSKEDI 426
Query: 157 SSVTLKLYYLLNG 169
SV L + +G
Sbjct: 427 ISVMKTLIGIRDG 439
Score = 37 (18.1 bits), Expect = 8.9e-08, Sum P(5) = 8.9e-08
Identities = 12/59 (20%), Positives = 25/59 (42%)
Query: 236 VQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN-DNNDKFNLL 293
+ LS R + ++ VIDGL ++ ++ +++ N + ND L+
Sbjct: 573 INSLSCYARTNDFGFLETPYRKVIDGLVTDEIDYLSAIEEGNFVIAQANAERNDSNKLV 631
>UNIPROTKB|I3LR52 [details] [associations]
symbol:I3LR52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR015712 Pfam:PF00562 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00690000102214 EMBL:CU683880
Ensembl:ENSSSCT00000028377 Uniprot:I3LR52
Length = 80
Score = 143 (55.4 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 38/96 (39%), Positives = 51/96 (53%)
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
MPF +G+ PD+I+NPH FPSRMT+ L+E +A K G L G+F T F S K
Sbjct: 1 MPFCD-SGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK---- 55
Query: 933 TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
D + LV G+NY G + + SG+ G
Sbjct: 56 ---DVCEDLVRH--------GYNYLGKDYVTSGITG 80
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1131 1120 0.00089 123 3 11 22 0.38 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 91
No. of states in DFA: 621 (66 KB)
Total size of DFA: 487 KB (2228 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:04
No. of threads or processors used: 24
Search cpu time: 93.65u 0.08s 93.73t Elapsed: 00:00:34
Total cpu time: 93.71u 0.08s 93.79t Elapsed: 00:00:38
Start: Fri May 10 18:01:31 2013 End: Fri May 10 18:02:09 2013